Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 400 of 438
Found at i:124768644 original size:40 final size:40
Alignment explanation
Indices: 124768546--124768736 Score: 276
Period size: 40 Copynumber: 4.7 Consensus size: 40
124768536 ACTCGAATTC
* * **
124768546 TCGCACACTAAGTGCCAATACATAGCTGGAGCTAT-TTTAA
1 TCGCACACTAAGTGCC-ATACATAGCCGAAGCTATCTCAAA
124768586 TCTTGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
1 TC--GCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
* **
124768628 TCGCACACTAAGTGCCATACATAGCCGTAGCTATCTTGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
*
124768668 TCGCACACTAAGTGCAATACATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
124768708 TCGCACACTAAGTGCCATACATAGCCGAA
1 TCGCACACTAAGTGCCATACATAGCCGAA
124768737 TTGTCATTAA
Statistics
Matches: 136, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
40 101 0.74
41 16 0.12
42 19 0.14
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
Found at i:124768688 original size:80 final size:80
Alignment explanation
Indices: 124768546--124768734 Score: 308
Period size: 80 Copynumber: 2.3 Consensus size: 80
124768536 ACTCGAATTC
* * *
124768546 TCGCACACTAAGTGCCAATACATAGCTGGAGCTATTTTAATCTTGCACACTAAGTGCCATACATA
1 TCGCACACTAAGTGCC-ATACATAGCCGGAGCTATTTGAATC-TGCACACTAAGTGCAATACATA
124768611 GCCGAAGCTATCTCAAA
64 GCCGAAGCTATCTCAAA
*
124768628 TCGCACACTAAGTGCCATACATAGCCGTAGCTATCTTGAATC-GCACACTAAGTGCAATACATAG
1 TCGCACACTAAGTGCCATACATAGCCGGAGCTAT-TTGAATCTGCACACTAAGTGCAATACATAG
124768692 CCGAAGCTATCTCAAA
65 CCGAAGCTATCTCAAA
124768708 TCGCACACTAAGTGCCATACATAGCCG
1 TCGCACACTAAGTGCCATACATAGCCG
124768735 AATTGTCATT
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
80 64 0.63
81 16 0.16
82 22 0.22
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (80 bp):
TCGCACACTAAGTGCCATACATAGCCGGAGCTATTTGAATCTGCACACTAAGTGCAATACATAGC
CGAAGCTATCTCAAA
Found at i:124769519 original size:12 final size:12
Alignment explanation
Indices: 124769502--124769529 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
124769492 GTTTTGTTTT
124769502 ATTTTAATTATC
1 ATTTTAATTATC
124769514 ATTTTAATTATC
1 ATTTTAATTATC
124769526 ATTT
1 ATTT
124769530 ACAATATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (12 bp):
ATTTTAATTATC
Found at i:124769995 original size:22 final size:21
Alignment explanation
Indices: 124769965--124770023 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
124769955 AACCTAATAA
*
124769965 GTCTTGAGACAA-TAGAGCCTAT
1 GTCTCGAGACAAGT-GA-CCTAT
* *
124769987 GTCTCGAGATGAAGTGACCTTT
1 GTCTCGAGA-CAAGTGACCTAT
124770009 GTCTCGAGACAAGTG
1 GTCTCGAGACAAGTG
124770024 CACATTGAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
21 5 0.16
22 21 0.68
23 4 0.13
24 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (21 bp):
GTCTCGAGACAAGTGACCTAT
Found at i:124771543 original size:26 final size:26
Alignment explanation
Indices: 124771507--124771616 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
124771497 TGATACAAAT
124771507 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
124771533 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
124771559 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
124771585 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
124771611 TGATAA
1 TGATAA
124771617 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:124779506 original size:12 final size:12
Alignment explanation
Indices: 124779491--124779525 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
124779481 TGAGACAATA
124779491 TATTCTTTAAAT
1 TATTCTTTAAAT
*
124779503 TATTCTTTTTAAT
1 TATTC-TTTAAAT
124779516 TATTCTTTAA
1 TATTCTTTAA
124779526 GTAACATAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.63
Consensus pattern (12 bp):
TATTCTTTAAAT
Found at i:124779674 original size:19 final size:22
Alignment explanation
Indices: 124779628--124779673 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
124779618 AAGTAGGTTG
124779628 TATATTATTTTTTGTAATATTA
1 TATATTATTTTTTGTAATATTA
124779650 TATATTATTTTTAT-TAAT-TTA
1 TATATTATTTTT-TGTAATATTA
124779671 TAT
1 TAT
124779674 TTTAATAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.26
22 16 0.70
23 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
TATATTATTTTTTGTAATATTA
Found at i:124779726 original size:21 final size:20
Alignment explanation
Indices: 124779697--124779736 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
124779687 ATATTAAGAA
124779697 TATTATTAAATTATATATTAT
1 TATTATTAAATTATA-ATTAT
*
124779718 TATTGTTAAATTATAATTA
1 TATTATTAAATTATAATTA
124779737 ATAATAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
TATTATTAAATTATAATTAT
Found at i:124779800 original size:58 final size:60
Alignment explanation
Indices: 124779648--124779801 Score: 140
Period size: 58 Copynumber: 2.5 Consensus size: 60
124779638 TTTGTAATAT
* * **
124779648 TATA-TATTATTTTTATTAATTTATATTTTAATAATTGCTATATTAAGAATATTATTAAATTA
1 TATATTATTATTTTTATTAAATTATA--TTAATAAAT-CTATATTAAGAATAGGATTAAATTA
* *
124779710 TATATTATTATTGTTAAATTATAATTA-A-TAATAAAT-T-TATTAA-AATAGGGTTAAATTA
1 TATATTATTATT-TT-TATTA-AATTATATTAATAAATCTATATTAAGAATAGGATTAAATTA
*
124779768 TGTATTATTATTTTTATTAAATTATATCTAATAA
1 TATATTATTATTTTTATTAAATTATAT-TAATAA
124779802 TAATCCTATT
Statistics
Matches: 77, Mismatches: 8, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
55 5 0.06
56 5 0.06
57 2 0.03
58 29 0.38
59 6 0.08
60 1 0.01
62 11 0.14
63 7 0.09
64 2 0.03
65 5 0.06
66 4 0.05
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (60 bp):
TATATTATTATTTTTATTAAATTATATTAATAAATCTATATTAAGAATAGGATTAAATTA
Found at i:124779995 original size:16 final size:16
Alignment explanation
Indices: 124779976--124780045 Score: 86
Period size: 16 Copynumber: 4.4 Consensus size: 16
124779966 TTGAATTGCT
*
124779976 ATTACAGTTCTATTCT
1 ATTACAGTTCTATTCC
**
124779992 ATTACAACTCTATTCC
1 ATTACAGTTCTATTCC
124780008 ATTACAGTTCTATTCC
1 ATTACAGTTCTATTCC
***
124780024 ATTACAACCCTATTCC
1 ATTACAGTTCTATTCC
124780040 ATTACA
1 ATTACA
124780046 CTGAACCAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.30, C:0.27, G:0.03, T:0.40
Consensus pattern (16 bp):
ATTACAGTTCTATTCC
Found at i:124780017 original size:32 final size:32
Alignment explanation
Indices: 124779976--124780045 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
124779966 TTGAATTGCT
* *
124779976 ATTACAGTTCTATTCTATTACAACTCTATTCC
1 ATTACAGTTCTATTCCATTACAACCCTATTCC
124780008 ATTACAGTTCTATTCCATTACAACCCTATTCC
1 ATTACAGTTCTATTCCATTACAACCCTATTCC
124780040 ATTACA
1 ATTACA
124780046 CTGAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.30, C:0.27, G:0.03, T:0.40
Consensus pattern (32 bp):
ATTACAGTTCTATTCCATTACAACCCTATTCC
Found at i:124781079 original size:24 final size:24
Alignment explanation
Indices: 124781050--124781103 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
124781040 TTATTATATA
* *
124781050 TTTTTAATATAACTA-CAATAATTT
1 TTTTTAATAGAAATATC-ATAATTT
124781074 TTTTT-ATAGAAATATCATAATTT
1 TTTTTAATAGAAATATCATAATTT
124781097 TTTTTAA
1 TTTTTAA
124781104 AACAATTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 19 0.73
24 7 0.27
ACGTcount: A:0.39, C:0.06, G:0.02, T:0.54
Consensus pattern (24 bp):
TTTTTAATAGAAATATCATAATTT
Found at i:124781550 original size:2 final size:2
Alignment explanation
Indices: 124781531--124781604 Score: 79
Period size: 2 Copynumber: 40.0 Consensus size: 2
124781521 ACTTTTATGA
*
124781531 AT AT -T AT AG AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
124781571 AT AT AT AT AT -T AT A- AT GT -T AT AT GT AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
124781605 GACAGAATTT
Statistics
Matches: 61, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
1 6 0.10
2 55 0.90
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (2 bp):
AT
Found at i:124791456 original size:54 final size:55
Alignment explanation
Indices: 124791369--124791476 Score: 200
Period size: 54 Copynumber: 2.0 Consensus size: 55
124791359 ACTTAAGGAC
124791369 AGTTGCCCAAAAGAAAAAAAAAGTTATCATCCGAAAATAGTAAATAGAGACACAT
1 AGTTGCCCAAAAGAAAAAAAAAGTTATCATCCGAAAATAGTAAATAGAGACACAT
*
124791424 AGTTGCCCAAAAG-AAAAAATAGTTATCATCCGAAAATAGTAAATAGAGACACA
1 AGTTGCCCAAAAGAAAAAAAAAGTTATCATCCGAAAATAGTAAATAGAGACACA
124791477 CTAGGTCCTC
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
54 39 0.75
55 13 0.25
ACGTcount: A:0.52, C:0.15, G:0.15, T:0.19
Consensus pattern (55 bp):
AGTTGCCCAAAAGAAAAAAAAAGTTATCATCCGAAAATAGTAAATAGAGACACAT
Found at i:124799387 original size:22 final size:21
Alignment explanation
Indices: 124799362--124799417 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
124799352 ATATTAGAAT
124799362 GAATTATAATAAATAACTAAAG
1 GAATTATAATAAAT-ACTAAAG
*
124799384 GAATAATATAA-AAATACTAATG
1 GAAT--TATAATAAATACTAAAG
*
124799406 TAATTATAATAA
1 GAATTATAATAA
124799418 CAATAATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
20 5 0.17
21 2 0.07
22 13 0.45
23 4 0.14
24 5 0.17
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (21 bp):
GAATTATAATAAATACTAAAG
Found at i:124799493 original size:13 final size:13
Alignment explanation
Indices: 124799475--124799499 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
124799465 AAGGTAACTT
124799475 AAAATAAAAAATA
1 AAAATAAAAAATA
124799488 AAAATAAAAAAT
1 AAAATAAAAAAT
124799500 GCATAATTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAATAAAAAATA
Found at i:124799765 original size:61 final size:61
Alignment explanation
Indices: 124799651--124799799 Score: 246
Period size: 61 Copynumber: 2.4 Consensus size: 61
124799641 AGGCAACAAT
** *
124799651 AAATAAATAAGTAAATAATAGTAAAATAAAAAATTCATGAAAGACTGAAATTGCAAT-AAA
1 AAATAAATAAGTAAATAATAAAAAAATAAAAAATTCATGAAAGACTAAAATTGCAATAAAA
*
124799711 AAATAAATAAGTAAATAATAAAAAATATAAAAAATTCATGAAAGGCTAAAATTGCAATAAAA
1 AAATAAATAAGTAAATAATAAAAAA-ATAAAAAATTCATGAAAGACTAAAATTGCAATAAAA
124799773 AAATAAATAAGTAAATAATAAAAAAAT
1 AAATAAATAAGTAAATAATAAAAAAAT
124799800 TATGAAAGTC
Statistics
Matches: 83, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
60 23 0.28
61 32 0.39
62 28 0.34
ACGTcount: A:0.65, C:0.04, G:0.08, T:0.23
Consensus pattern (61 bp):
AAATAAATAAGTAAATAATAAAAAAATAAAAAATTCATGAAAGACTAAAATTGCAATAAAA
Found at i:124799797 original size:54 final size:54
Alignment explanation
Indices: 124799712--124799919 Score: 209
Period size: 54 Copynumber: 4.0 Consensus size: 54
124799702 TGCAATAAAA
* * *
124799712 AATAAATAAGTAAATAA-TAAAAAATATAAAAAATTCATGAAAGGCTAAAATTGC
1 AATAAAAAAATAAATAAGTAAATAATA-AAAAAATTCATGAAAGGCTAAAATTGC
* ** *
124799766 AATAAAAAAATAAATAAGTAAATAATAAAAAAATT-ATGAAAGTCTGGAGTTGC
1 AATAAAAAAATAAATAAGTAAATAATAAAAAAATTCATGAAAGGCTAAAATTGC
* * * *
124799819 AATAATAAATAAGAAATAAGTAAATAAT-AAAAAA-TCATGAAATGCTGAAGTTGC
1 AATAA-AAA-AATAAATAAGTAAATAATAAAAAAATTCATGAAAGGCTAAAATTGC
* *
124799873 AAT-----AATAAATAAGTAAATAATAAAAAAAATCATGAAAGGATAAAATT
1 AATAAAAAAATAAATAAGTAAATAATAAAAAAATTCATGAAAGGCTAAAATT
124799920 AAATAAATAA
Statistics
Matches: 132, Mismatches: 16, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
47 17 0.13
48 6 0.05
49 14 0.11
53 20 0.15
54 50 0.38
55 25 0.19
ACGTcount: A:0.61, C:0.04, G:0.11, T:0.24
Consensus pattern (54 bp):
AATAAAAAAATAAATAAGTAAATAATAAAAAAATTCATGAAAGGCTAAAATTGC
Found at i:124799891 original size:114 final size:115
Alignment explanation
Indices: 124799647--124799892 Score: 273
Period size: 114 Copynumber: 2.2 Consensus size: 115
124799637 CGTAAGGCAA
124799647 CAATAAATAAATAAGTAAAT-AATAGTAAAATAAAAAATTCATGAAAGACTGAAATTGCAATAAA
1 CAAT-AATAAATAAGTAAATAAATAGTAAAATAAAAAATTCATGAAAGACTGAAATTGCAAT---
124799711 AAATAAATAAGTAAATAATAAAAAATATAAAAAATTCATGAAAGGCTAAAATTG
62 AAATAAATAAGTAAATAATAAAAAATATAAAAAATTCATGAAAGGCTAAAATTG
* * * *
124799765 CAATAA-AAA-AA-TAAATAAGTA--AATAATAAAAAAATT-ATGAAAGTCTGGAGTTGCAAT-A
1 CAATAATAAATAAGTAAATAAATAGTAA-AAT-AAAAAATTCATGAAAGACTGAAATTGCAATAA
* * * *
124799823 ATAAATAAG-AAATAAGT-AAATA-ATAAAAAA-TCATGAAATGCTGAAGTTG
64 ATAAATAAGTAAATAA-TAAAAAATATAAAAAATTCATGAAAGGCTAAAATTG
124799872 CAATAATAAATAAGTAAATAA
1 CAATAATAAATAAGTAAATAA
124799893 TAAAAAAAAT
Statistics
Matches: 113, Mismatches: 8, Indels: 22
0.79 0.06 0.15
Matches are distributed among these distances:
107 22 0.19
108 11 0.10
109 12 0.11
110 18 0.16
113 2 0.02
114 26 0.23
115 13 0.12
116 3 0.03
117 2 0.02
118 4 0.04
ACGTcount: A:0.61, C:0.05, G:0.11, T:0.24
Consensus pattern (115 bp):
CAATAATAAATAAGTAAATAAATAGTAAAATAAAAAATTCATGAAAGACTGAAATTGCAATAAAT
AAATAAGTAAATAATAAAAAATATAAAAAATTCATGAAAGGCTAAAATTG
Found at i:124830150 original size:12 final size:12
Alignment explanation
Indices: 124830132--124830166 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
124830122 CTGTTTCTGT
124830132 AATCTGAATCTA
1 AATCTGAATCTA
*
124830144 GATCTGAATCTA
1 AATCTGAATCTA
*
124830156 AACCTGAATCT
1 AATCTGAATCT
124830167 GTATATGCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.31
Consensus pattern (12 bp):
AATCTGAATCTA
Found at i:124833762 original size:21 final size:21
Alignment explanation
Indices: 124833692--124833763 Score: 83
Period size: 21 Copynumber: 3.4 Consensus size: 21
124833682 TTTTTTGAGC
*
124833692 TTCTGTTTAACCCTTATGGGT
1 TTCTGTTTAACTCTTATGGGT
* * * *
124833713 TTTTGTTCAGCTCTTATGAGCT
1 TTCTGTTTAACTCTTATG-GGT
124833735 TT-TGTTTAACTCTTATGGGT
1 TTCTGTTTAACTCTTATGGGT
124833755 TTCTGTTTA
1 TTCTGTTTA
124833764 GCATTTATGT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
20 4 0.10
21 33 0.80
22 4 0.10
ACGTcount: A:0.14, C:0.15, G:0.18, T:0.53
Consensus pattern (21 bp):
TTCTGTTTAACTCTTATGGGT
Found at i:124833772 original size:42 final size:42
Alignment explanation
Indices: 124833627--124833765 Score: 154
Period size: 42 Copynumber: 3.3 Consensus size: 42
124833617 TCATGTTTAC
* *
124833627 TTTCCGTTTAGCTCTTATGAGCTTCTGTTTTAACTCATATGAG
1 TTTCCGTTTAGCTCTTATGAGCTTCTG-TTTAACTCTTATGGG
* * * *
124833670 TTTCCCTTCT-GCTTTTTTGAGCTTCTGTTTAACCCTTATGGG
1 TTTCCGTT-TAGCTCTTATGAGCTTCTGTTTAACTCTTATGGG
** * *
124833712 TTTTTGTTCAGCTCTTATGAGCTTTTGTTTAACTCTTATGGG
1 TTTCCGTTTAGCTCTTATGAGCTTCTGTTTAACTCTTATGGG
*
124833754 TTTCTGTTTAGC
1 TTTCCGTTTAGC
124833766 ATTTATGTAC
Statistics
Matches: 78, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
42 55 0.71
43 22 0.28
44 1 0.01
ACGTcount: A:0.14, C:0.19, G:0.17, T:0.50
Consensus pattern (42 bp):
TTTCCGTTTAGCTCTTATGAGCTTCTGTTTAACTCTTATGGG
Found at i:124842246 original size:62 final size:62
Alignment explanation
Indices: 124842149--124842270 Score: 208
Period size: 62 Copynumber: 2.0 Consensus size: 62
124842139 AAACCGATAG
* * *
124842149 CATTCGTAAACTTTGAAATACATAGAAAATTTTTCCAACATTTCAGGGTCATACGCCCGTAA
1 CATTCGTAAACTTTGAAATACATAGAAAAATTTTCCAACATTTCAGGGTCACACACCCGTAA
*
124842211 CATTCGTAAACTTTGAAATACATAGAAAAATTTTCCAACATTTTAGGGTCACACACCCGT
1 CATTCGTAAACTTTGAAATACATAGAAAAATTTTCCAACATTTCAGGGTCACACACCCGT
124842271 GTGAACAAGC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.30
Consensus pattern (62 bp):
CATTCGTAAACTTTGAAATACATAGAAAAATTTTCCAACATTTCAGGGTCACACACCCGTAA
Found at i:124843625 original size:43 final size:43
Alignment explanation
Indices: 124843560--124843732 Score: 172
Period size: 43 Copynumber: 4.0 Consensus size: 43
124843550 AGCTCATACA
* * *
124843560 ATGCC-ATATCCCAGATATGGTCTTACACGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * * *
124843602 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCGA-TTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATC-ACATATCG
* * * * *
124843645 ATGTCAATGTCCTAGACATGGTCTTACATGTAATCTCA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* *
124843688 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATCTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
124843731 AT
1 AT
124843733 AACCTCATGC
Statistics
Matches: 103, Mismatches: 23, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
42 6 0.06
43 95 0.92
44 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:124845722 original size:21 final size:21
Alignment explanation
Indices: 124845698--124845741 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
124845688 ATATCTATCA
124845698 ACTTAAACCATGCAAATTTCT
1 ACTTAAACCATGCAAATTTCT
124845719 ACTTAAACCATGCAAATTTCT
1 ACTTAAACCATGCAAATTTCT
124845740 AC
1 AC
124845742 ATCCATGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.25, G:0.05, T:0.32
Consensus pattern (21 bp):
ACTTAAACCATGCAAATTTCT
Found at i:124849080 original size:45 final size:46
Alignment explanation
Indices: 124848983--124849091 Score: 150
Period size: 45 Copynumber: 2.3 Consensus size: 46
124848973 AGCTTAAGAT
*
124848983 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAG-GTGAATATGTGATAAGGC
*
124849030 CGAATGGCCAATGTGAT-ATATGTGTAA-GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGGTGAATATGTGATAAGGC
*
124849075 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
124849092 AAAGTGTGCA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
45 27 0.47
46 6 0.11
47 24 0.42
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (46 bp):
CGAATGGCCAATGTGATGAATGTGAAAGGTGAATATGTGATAAGGC
Found at i:124849217 original size:39 final size:40
Alignment explanation
Indices: 124849162--124849246 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
124849152 AAATGAATTG
* * * *
124849162 TGCTGAGATTGCATCCG-GGTTAGAGACCCGCTGGCTTCA
1 TGCTGGGATTGCATCCGAGGTTAAAGACCCGCAGGCTTAA
* * *
124849201 TGCTGGGATTGTATCCGAGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGCATCCGAGGTTAAAGACCCGCAGGCTTAA
124849241 TGCTGG
1 TGCTGG
124849247 TGAATTAAGT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 15 0.39
40 23 0.61
ACGTcount: A:0.19, C:0.22, G:0.31, T:0.28
Consensus pattern (40 bp):
TGCTGGGATTGCATCCGAGGTTAAAGACCCGCAGGCTTAA
Found at i:124850135 original size:32 final size:32
Alignment explanation
Indices: 124850094--124850159 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
124850084 CTACTACACT
124850094 ATTACCAAATCATGAATTTAACACCGGAAATA
1 ATTACCAAATCATGAATTTAACACCGGAAATA
124850126 ATTACCAAATCATGAATTTAACACCGGAAATA
1 ATTACCAAATCATGAATTTAACACCGGAAATA
124850158 AT
1 AT
124850160 CAGCCATGAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.47, C:0.18, G:0.09, T:0.26
Consensus pattern (32 bp):
ATTACCAAATCATGAATTTAACACCGGAAATA
Found at i:124852973 original size:2 final size:2
Alignment explanation
Indices: 124852968--124852992 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
124852958 TAAGTTTTTT
124852968 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
124852993 TCATGTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:124854413 original size:42 final size:42
Alignment explanation
Indices: 124854264--124854413 Score: 151
Period size: 42 Copynumber: 3.5 Consensus size: 42
124854254 ACAATAACCT
** * * *
124854264 AGATATGGTCTTACATATAATCTCGTATCGATGCCAATAGCCC
1 AGATATGGTCTTACACGTAGTCTCATATCGATGCC-ATATCCC
* * * * *
124854307 AGCTATGATCTTACACGAAATCTCATATCGATGCCATATCCT
1 AGATATGGTCTTACACGTAGTCTCATATCGATGCCATATCCC
*
124854349 AGATATGGTCTTATAC-TAAGTCTCATA-CTGATGCCATATCCC
1 AGATATGGTCTTACACGT-AGTCTCATATC-GATGCCATATCCC
*
124854391 AGATATGGTTTTACACGTAGTCT
1 AGATATGGTCTTACACGTAGTCT
124854414 TAGTAACACT
Statistics
Matches: 88, Mismatches: 16, Indels: 7
0.79 0.14 0.06
Matches are distributed among these distances:
41 1 0.01
42 57 0.65
43 30 0.34
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (42 bp):
AGATATGGTCTTACACGTAGTCTCATATCGATGCCATATCCC
Found at i:124857065 original size:9 final size:9
Alignment explanation
Indices: 124857051--124857090 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
124857041 ATGCAAATTA
124857051 AAAAGAAAG
1 AAAAGAAAG
124857060 AAAAGAAA-
1 AAAAGAAAG
124857068 AGAAAGAAAG
1 A-AAAGAAAG
*
124857078 AAAAGAAGG
1 AAAAGAAAG
124857087 AAAA
1 AAAA
124857091 AACGCACGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
8 1 0.04
9 26 0.93
10 1 0.04
ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:124860174 original size:28 final size:28
Alignment explanation
Indices: 124860130--124860197 Score: 111
Period size: 28 Copynumber: 2.5 Consensus size: 28
124860120 TCTTAATTTT
124860130 TATTA-TTTATTTCATTTTATTAGTATC
1 TATTATTTTATTTCATTTTATTAGTATC
* *
124860157 TATTATTTTATTTTATTTTATTAGTATT
1 TATTATTTTATTTCATTTTATTAGTATC
124860185 TATTATTTTATTT
1 TATTATTTTATTT
124860198 AATTATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 5 0.13
28 33 0.87
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (28 bp):
TATTATTTTATTTCATTTTATTAGTATC
Found at i:124860190 original size:23 final size:23
Alignment explanation
Indices: 124860136--124860217 Score: 73
Period size: 28 Copynumber: 3.5 Consensus size: 23
124860126 TTTTTATTAT
*
124860136 TTATTTCATTTTATTAGTATCTATTA
1 TTATTTTATTTTATTAGTA--T-TTA
124860162 TTTTATTTTATTTTATTAGTATTTA
1 --TTATTTTATTTTATTAGTATTTA
*
124860187 TTATTTTA-TTTA--ATTATTTA
1 TTATTTTATTTTATTAGTATTTA
124860207 TTA-TTTATTTT
1 TTATTTTATTTT
124860218 GGATATTAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
19 4 0.08
20 13 0.25
22 4 0.08
23 8 0.16
25 3 0.06
26 1 0.02
28 18 0.35
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (23 bp):
TTATTTTATTTTATTAGTATTTA
Found at i:124861494 original size:96 final size:97
Alignment explanation
Indices: 124861330--124861509 Score: 240
Period size: 96 Copynumber: 1.9 Consensus size: 97
124861320 TTTTTAAGAA
* * ** *
124861330 TATGTTAGGCTGAGTAATCGGGGTGAGGAGTTTGGCTGTCATCTTTCTTCGTGTCGAAAGGTTCA
1 TATGTTAGGCTGAGTAACCGGGGTGAGGAGTTTGGCTGTCATCTCTCTTCACGTCAAAAGGTTCA
* *
124861395 ATATGTTCTTAAG-AAAAATAAAAATTAGGAG
66 ATATATTCCTAAGTAAAAATAAAAATTAGGAG
* *
124861426 TATGTTGGGCTGAGTAACCGGGGT-AGG-GTGCTTGGTTGTCATCTCTCTTCACGTCAAAAGGTT
1 TATGTTAGGCTGAGTAACCGGGGTGAGGAGT--TTGGCTGTCATCTCTCTTCACGTCAAAAGGTT
124861489 CAATATATTCCTAAGTAAAAA
64 CAATATATTCCTAAGTAAAAA
124861510 AAATTCATTA
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
94 2 0.03
95 3 0.04
96 62 0.86
97 5 0.07
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (97 bp):
TATGTTAGGCTGAGTAACCGGGGTGAGGAGTTTGGCTGTCATCTCTCTTCACGTCAAAAGGTTCA
ATATATTCCTAAGTAAAAATAAAAATTAGGAG
Found at i:124861524 original size:13 final size:13
Alignment explanation
Indices: 124861506--124861537 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
124861496 TTCCTAAGTA
*
124861506 AAAAAAATTCATT
1 AAAAAAATTAATT
124861519 AAAAAAATTAATT
1 AAAAAAATTAATT
124861532 AAAAAA
1 AAAAAA
124861538 GAAGAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (13 bp):
AAAAAAATTAATT
Found at i:124862192 original size:10 final size:10
Alignment explanation
Indices: 124862177--124862216 Score: 64
Period size: 10 Copynumber: 4.0 Consensus size: 10
124862167 TAATTTTAGG
124862177 ATTTATCTTT
1 ATTTATCTTT
124862187 ATTTATCTTT
1 ATTTATCTTT
124862197 ATTTAT-TTAT
1 ATTTATCTT-T
124862207 ATTTATCTTT
1 ATTTATCTTT
124862217 TAGTATTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 2 0.07
10 24 0.86
11 2 0.07
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:124862203 original size:14 final size:14
Alignment explanation
Indices: 124862184--124862225 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
124862174 AGGATTTATC
*
124862184 TTTATTTATCTTTA
1 TTTATTTATATTTA
124862198 TTTATTTATATTTA
1 TTTATTTATATTTA
*
124862212 TCT-TTTAGTATTTA
1 TTTATTTA-TATTTA
124862226 ATTAGGAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 4 0.16
14 21 0.84
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (14 bp):
TTTATTTATATTTA
Found at i:124862223 original size:20 final size:20
Alignment explanation
Indices: 124862186--124862225 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
124862176 GATTTATCTT
*
124862186 TATTTATCTTTATTTATTTA
1 TATTTATCTTTATGTATTTA
124862206 TATTTATCTTT-TAGTATTTA
1 TATTTATCTTTAT-GTATTTA
124862226 ATTAGGAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (20 bp):
TATTTATCTTTATGTATTTA
Found at i:124864839 original size:48 final size:48
Alignment explanation
Indices: 124864719--124865041 Score: 388
Period size: 48 Copynumber: 6.7 Consensus size: 48
124864709 AATTTCTGTA
* * * *
124864719 TAAGACCATAGCTGGGCTATGGCATCGGAGAGATGTGATTATGTGCTACTGTA
1 TAAGACCATAGCTGGGCTATGGCATC--A-ATATGTGA-TATGTGAT-CCGTG
*
124864772 TAAGACCATAGCTGTGCTATGGCATCAATATGTGATATGTGATCCGTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGATCCGTG
*
124864820 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATCCGTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGATCCGTG
* * * *
124864868 TCAGACCATAGCTAGGCTATGGCATCGATATGTGATATGAGATCCGTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGATCCGTG
* * * * *
124864916 TCAGACCATAGCTAGGCTATGACATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGA-TCCGTG
* *
124864965 TAAGACCATAACTGGGCTATGGCATCTATATGTGA-A--T-AT--GTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGATCCGTG
*
124865007 TAAGACCATAGCTGGGCTATGGCATCATTATGTGA
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGA
124865042 AGATGTGTAA
Statistics
Matches: 248, Mismatches: 21, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
42 35 0.14
44 1 0.00
45 1 0.00
46 1 0.00
48 135 0.54
49 42 0.17
50 7 0.03
51 1 0.00
53 25 0.10
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGATCCGTG
Found at i:124865009 original size:42 final size:41
Alignment explanation
Indices: 124864950--124865058 Score: 164
Period size: 42 Copynumber: 2.6 Consensus size: 41
124864940 TCGATATGTG
* *
124864950 ATATGTGATTACGTGTAAGACCATAACTGGGCTATGGCATC
1 ATATGTGAATATGTGTAAGACCATAACTGGGCTATGGCATC
*
124864991 TATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
1 -ATATGTGAATATGTGTAAGACCATAACTGGGCTATGGCATC
*
124865033 ATTATGTGAAGATGTGTAAGACCATA
1 A-TATGTGAATATGTGTAAGACCATA
124865059 GTTGAACTAT
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
41 1 0.02
42 61 0.98
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (41 bp):
ATATGTGAATATGTGTAAGACCATAACTGGGCTATGGCATC
Found at i:124867556 original size:18 final size:18
Alignment explanation
Indices: 124867518--124867566 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
124867508 TGTTCTATAT
*
124867518 TGAAATG-ACATG-GTTG
1 TGAAATGAAAATGAGTTG
*
124867534 AGAAATGAAAATGAGTTG
1 TGAAATGAAAATGAGTTG
124867552 TGAAATGAAATATGA
1 TGAAATGAAA-ATGA
124867567 AATGGTATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 6 0.22
17 4 0.15
18 13 0.48
19 4 0.15
ACGTcount: A:0.45, C:0.02, G:0.27, T:0.27
Consensus pattern (18 bp):
TGAAATGAAAATGAGTTG
Found at i:124868921 original size:48 final size:48
Alignment explanation
Indices: 124868865--124868956 Score: 175
Period size: 48 Copynumber: 1.9 Consensus size: 48
124868855 TTCAAGAAGG
124868865 GATAAATAGTGATAAGAGTGTACACAGTGGAAAACCAAGTTTAGTAAT
1 GATAAATAGTGATAAGAGTGTACACAGTGGAAAACCAAGTTTAGTAAT
*
124868913 GATAAATAGTGATAAGAGTGTAGACAGTGGAAAACCAAGTTTAG
1 GATAAATAGTGATAAGAGTGTACACAGTGGAAAACCAAGTTTAG
124868957 CATTGCATAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.43, C:0.08, G:0.25, T:0.24
Consensus pattern (48 bp):
GATAAATAGTGATAAGAGTGTACACAGTGGAAAACCAAGTTTAGTAAT
Found at i:124879846 original size:50 final size:49
Alignment explanation
Indices: 124879758--124879924 Score: 115
Period size: 49 Copynumber: 3.4 Consensus size: 49
124879748 ATTCAAGAAT
* * *
124879758 GCTCATGTGAGCATATAAACGGGTAGCTCTTTCAAGCCATACAACAGGAA
1 GCTCATGTGAGCATATAAACGGGAAGCTCTATAAAGCCATA-AACAGGAA
* * *
124879808 GCTCATGTGAGCCATGT-AACGGGAAGC-CTATAAGAGCCATAATCGGGAA
1 GCTCATGTGAG-CATATAAACGGGAAGCTCTATAA-AGCCATAAACAGGAA
*** * * * * * *
124879857 GCTCAAACGGGC-CATAAACGGGAAGCTCAAGAGAGCCATAAATAGGGAA
1 GCTCATGTGAGCATATAAACGGGAAGCTCTATAAAGCCATAAACA-GGAA
* *
124879906 GCTCGTGAGAGCCATATAA
1 GCTCATGTGAG-CATATAA
124879925 TGGAATGCTC
Statistics
Matches: 86, Mismatches: 24, Indels: 13
0.70 0.20 0.11
Matches are distributed among these distances:
47 1 0.01
48 19 0.22
49 30 0.35
50 28 0.33
51 8 0.09
ACGTcount: A:0.35, C:0.21, G:0.26, T:0.17
Consensus pattern (49 bp):
GCTCATGTGAGCATATAAACGGGAAGCTCTATAAAGCCATAAACAGGAA
Found at i:124879870 original size:24 final size:24
Alignment explanation
Indices: 124879840--124879921 Score: 94
Period size: 24 Copynumber: 3.4 Consensus size: 24
124879830 GAAGCCTATA
124879840 AGAGCCATAATCGGGAAGCTCAA-
1 AGAGCCATAATCGGGAAGCTCAAG
* *
124879863 ACGGGCCATAAACGGGAAGCTCAAG
1 A-GAGCCATAATCGGGAAGCTCAAG
* **
124879888 AGAGCCATAAATAGGGAAGCTCGTG
1 AGAGCCAT-AATCGGGAAGCTCAAG
124879913 AGAGCCATA
1 AGAGCCATA
124879922 TAATGGAATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
23 1 0.02
24 27 0.55
25 21 0.43
ACGTcount: A:0.38, C:0.21, G:0.29, T:0.12
Consensus pattern (24 bp):
AGAGCCATAATCGGGAAGCTCAAG
Found at i:124879915 original size:25 final size:24
Alignment explanation
Indices: 124879840--124879935 Score: 86
Period size: 24 Copynumber: 3.9 Consensus size: 24
124879830 GAAGCCTATA
**
124879840 AGAGCCATAATCGGGAAGCTCAA-
1 AGAGCCATAAAAGGGAAGCTCAAG
* *
124879863 ACGGGCCATAAACGGGAAGCTCAAG
1 A-GAGCCATAAAAGGGAAGCTCAAG
**
124879888 AGAGCCATAAATAGGGAAGCTCGTG
1 AGAGCCATAAA-AGGGAAGCTCAAG
* *
124879913 AGAGCCATATAATGGAATGCTCA
1 AGAGCCATAAAAGGGAA-GCTCA
124879936 TAAGAGCTAA
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
23 1 0.02
24 34 0.57
25 25 0.42
ACGTcount: A:0.38, C:0.20, G:0.28, T:0.15
Consensus pattern (24 bp):
AGAGCCATAAAAGGGAAGCTCAAG
Found at i:124879941 original size:25 final size:24
Alignment explanation
Indices: 124879792--124879942 Score: 78
Period size: 25 Copynumber: 6.1 Consensus size: 24
124879782 AGCTCTTTCA
* **
124879792 AGCCATACAACAGGAAGCTCATGTG
1 AGCCATA-AATAGGAAGCTCATAAG
* **
124879817 AGCCATGTAACGGGAAGC-CTATAAG
1 AGCCAT-AAATAGGAAGCTC-ATAAG
*
124879842 AGCCAT-AATCGGGAAGCTCA-AACG
1 AGCCATAAAT-AGGAAGCTCATAA-G
* **
124879866 GGCCATAAACGGGAAGCTCA-AGAG
1 AGCCATAAATAGGAAGCTCATA-AG
* *
124879890 AGCCATAAATAGGGAAGCTCGTGAG
1 AGCCATAAATA-GGAAGCTCATAAG
124879915 AGCCATATAAT-GGAATGCTCATAAG
1 AGCCATA-AATAGGAA-GCTCATAAG
124879940 AGC
1 AGC
124879943 TAAATAACGG
Statistics
Matches: 101, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
23 4 0.04
24 39 0.39
25 55 0.54
26 3 0.03
ACGTcount: A:0.37, C:0.21, G:0.27, T:0.15
Consensus pattern (24 bp):
AGCCATAAATAGGAAGCTCATAAG
Found at i:124885078 original size:35 final size:35
Alignment explanation
Indices: 124884987--124885081 Score: 172
Period size: 35 Copynumber: 2.7 Consensus size: 35
124884977 CATGGAAAAG
* *
124884987 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
124885022 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
124885057 TGTGAAATGTAGGTATGGTATTATC
1 TGTGAAATGTAGGTATGGTATTATC
124885082 AAATCCATAT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 58 1.00
ACGTcount: A:0.28, C:0.09, G:0.26, T:0.36
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
Found at i:124885147 original size:35 final size:35
Alignment explanation
Indices: 124884991--124885155 Score: 159
Period size: 35 Copynumber: 4.5 Consensus size: 35
124884981 GAAAAGTGTG
* * **
124884991 AAATGTAGGTATGGTATCATCCATACTGAGTTGTG
1 AAATGTAGGTATGGTATTACCCATACTGAGTTGAA
* * **
124885026 AAATGTAGGTATGGTATTATCCATACTGAGCTGTG
1 AAATGTAGGTATGGTATTACCCATACTGAGTTGAA
* *
124885061 AAATGTAGGTATGGTATTATCAAATCCATATTGAGTTAAAAA
1 AAATGTAGGTATGGTATTA-C----CCATACTGAGTT--GAA
* *
124885103 AAATGTAGGTATGGCATTACCCATACCGAGTTGAA
1 AAATGTAGGTATGGTATTACCCATACTGAGTTGAA
124885138 AAATGTAGGTATGGTATT
1 AAATGTAGGTATGGTATT
124885156 TCAATGAGGA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
35 71 0.65
37 10 0.09
40 10 0.09
41 1 0.01
42 18 0.16
ACGTcount: A:0.34, C:0.10, G:0.23, T:0.33
Consensus pattern (35 bp):
AAATGTAGGTATGGTATTACCCATACTGAGTTGAA
Found at i:124891747 original size:24 final size:24
Alignment explanation
Indices: 124891715--124891779 Score: 87
Period size: 24 Copynumber: 2.7 Consensus size: 24
124891705 AAAAACTAAG
**
124891715 TGGCACTATGTGTGCGA-GACTTCA
1 TGGCACTATGTGTGCGAGGA-AACA
*
124891739 TGGCACTATGTGTGCGAGGAAACG
1 TGGCACTATGTGTGCGAGGAAACA
124891763 TGGCACTATGTGTGCGA
1 TGGCACTATGTGTGCGA
124891780 ATAAGTAAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 35 0.95
25 2 0.05
ACGTcount: A:0.22, C:0.18, G:0.34, T:0.26
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAGGAAACA
Found at i:124894460 original size:39 final size:38
Alignment explanation
Indices: 124894406--124894482 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 38
124894396 TGGATATGAG
124894406 ATTGTTGTGGACTATGAGTAAAGGTTGTTTTTTTAGACT
1 ATTGTTGTGGACTATGAGTAAAGGTTG-TTTTTTAGACT
124894445 ATTGTTGTGGACTATGAGTAAAGGTTGTTTTTTAGACT
1 ATTGTTGTGGACTATGAGTAAAGGTTGTTTTTTAGACT
124894483 TTCAGTTTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
38 11 0.29
39 27 0.71
ACGTcount: A:0.23, C:0.05, G:0.26, T:0.45
Consensus pattern (38 bp):
ATTGTTGTGGACTATGAGTAAAGGTTGTTTTTTAGACT
Found at i:124897049 original size:39 final size:39
Alignment explanation
Indices: 124897000--124897105 Score: 122
Period size: 39 Copynumber: 2.7 Consensus size: 39
124896990 CGAGTCTCGT
* * *
124897000 GGTCCACTGATTTACAATCACGACTTTTGGTTTTCTTAC
1 GGTCCGCTGATTTACAATCACGACTTTTGGCTTTCTCAC
* * * *
124897039 GGTCTGCTGATTTACTATCACAACCTTTGGCTTTCTCAC
1 GGTCCGCTGATTTACAATCACGACTTTTGGCTTTCTCAC
* * *
124897078 GGTCCGTTGATTTACGATCGCGACTTTT
1 GGTCCGCTGATTTACAATCACGACTTTT
124897106 TACTTACGAG
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.40
Consensus pattern (39 bp):
GGTCCGCTGATTTACAATCACGACTTTTGGCTTTCTCAC
Found at i:124897050 original size:93 final size:91
Alignment explanation
Indices: 124896785--124897052 Score: 270
Period size: 93 Copynumber: 2.9 Consensus size: 91
124896775 CGACCACGAC
* * * *
124896785 CTTTTACTTACAGGATTGTATGAATCTCGCGGTCCGCTGATTTACGATACGACCTTTGGCTTTTT
1 CTTTTACTTACGGGATTTTATGAATCTCGTGGTCCGCTGATTTACGATACGACATTTGG-TTTTT
* * *
124896850 TATGATCCACTAATTTATGATTACAAT
65 TATGGTCCGCTGATTTATGATTACAAT
* * * * *
124896877 CTTTTACTTACGGTATTTTATGAATCTCGTTGTCTGTTGATTTACGATTACGACATTTGACTTTT
1 CTTTTACTTACGGGATTTTATGAATCTCGTGGTCCGCTGATTTACGA-TACGACATTTG-GTTTT
* *
124896942 TTATGGTCCGTTGATTTATGA-T-CATT
64 TTATGGTCCGCTGATTTATGATTACAAT
* * * * *
124896968 ACTTTTTACTTACGGGATTTTACGAGTCTCGTGGTCCACTGATTTACAATCACGACTTTTGGTTT
1 -C-TTTTACTTACGGGATTTTATGAATCTCGTGGTCCGCTGATTTACGAT-ACGACATTTGGTTT
* *
124897033 TCTTACGGTCTGCTGATTTA
63 T-TTATGGTCCGCTGATTTA
124897053 CTATCACAAC
Statistics
Matches: 143, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
91 3 0.02
92 47 0.33
93 93 0.65
ACGTcount: A:0.21, C:0.18, G:0.17, T:0.44
Consensus pattern (91 bp):
CTTTTACTTACGGGATTTTATGAATCTCGTGGTCCGCTGATTTACGATACGACATTTGGTTTTTT
ATGGTCCGCTGATTTATGATTACAAT
Found at i:124898310 original size:30 final size:29
Alignment explanation
Indices: 124898255--124898311 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
124898245 TATACTGAAC
124898255 AATTTTATAATATAAAATTAATATTTATA
1 AATTTTATAATATAAAATTAATATTTATA
*
124898284 AATTTCTATACTA-AAAATTCAATATTTA
1 AATTT-TATAATATAAAATT-AATATTTA
124898312 ATTTTTCATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (29 bp):
AATTTTATAATATAAAATTAATATTTATA
Found at i:124900327 original size:3 final size:3
Alignment explanation
Indices: 124900246--124900316 Score: 52
Period size: 3 Copynumber: 22.3 Consensus size: 3
124900236 TAGTGAATAC
* * * *
124900246 AAT AAT AAGA AAT AAT AAT AAC AAT AAT AAT ATT CAATT AAT AAT ACT
1 AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT -AA-T AAT AAT AAT
* *
124900294 ATAT GAT AAT AAT GAT AAT AAT A
1 A-AT AAT AAT AAT AAT AAT AAT A
124900317 GTGAAATAAT
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
3 45 0.87
4 6 0.12
5 1 0.02
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:124900347 original size:21 final size:19
Alignment explanation
Indices: 124900294--124900351 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 19
124900284 TAATAATACT
*
124900294 ATATGATAATAATGATAATA
1 ATATGATAATAAT-ATAAAA
124900314 ATAGTGA-AATAATATAAAA
1 ATA-TGATAATAATATAAAA
124900333 ATGTATGATAATAATATAA
1 A--TATGATAATAATATAA
124900352 TTACATAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
19 6 0.18
20 12 0.36
21 15 0.45
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (19 bp):
ATATGATAATAATATAAAA
Found at i:124903233 original size:94 final size:94
Alignment explanation
Indices: 124901842--124903232 Score: 1402
Period size: 94 Copynumber: 14.8 Consensus size: 94
124901832 GTTTTAATTC
* * * * *
124901842 GACCTACTGAAACTTCAGAGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
* *
124901907 GATAAGACTCGCTATGGTAGA-TTCAATCC
66 GATAAGATTCGCTATGGTA-ACTTCAATCT
* * * * * *
124901936 GACCTACTACAACTTTAGGGGTATAGGATTTGTAGCTTTATCTTGCTCCACTACAACTTCAAGGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
* **
124902001 GATAAGACTCGCTATAATAGA-TTCAAT-T
66 GATAAGATTCGCTATGGTA-ACTTCAATCT
* * * * * * * * * *
124902029 CGGCCCACTGTAACTTCAGCGGTTTATGATTTGTAGCTTTATCTTACTTCGCTGTAACTTCAGGG
1 -GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGG
* * *
124902094 AGATAAGATTCTCTATGGCAACTTCAATCC
65 AGATAAGATTCGCTATGGTAACTTCAATCT
* * * *
124902124 GACCCACTGTAACTTCAGGGGTATAGGATTGGTAGCTTCATCTTGCTCCACTGCAATTTCTGGGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
** * * *
124902189 GATAAGATTCATTATGGTAACTTTAACCC
66 GATAAGATTCGCTATGGTAACTTCAATCT
* *
124902218 GACCCACTACAACTTCAAGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
* * * *
124902283 GATAAGATTCACTATGATAAATTCAATCC
66 GATAAGATTCGCTATGGTAACTTCAATCT
* * * ** * * * * *
124902312 GATCCACTGCAACTTTAGGGGTGTAAAATTTGTAGTTTCATCTTACTCTACTGCAACTTTAGAGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
* * *
124902377 GATAAGATTCGTTATGGTAACTTTAATCC
66 GATAAGATTCGCTATGGTAACTTCAATCT
* * * * * * *
124902406 GACCCACAGCAACTTTAGAGGTATAAGATTTGTAGCTTCATCTTGCTCCACTGCAAATTTAGGAA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
* *
124902471 GATAAGACTCGCTATGGTAGA-TTCAATCC
66 GATAAGATTCGCTATGGTA-ACTTCAATCT
* * * * * * *
124902500 AACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATTTTACTCTACTACAAATTCAAGGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
*
124902565 GATAAGTTTCGCTATGGTAACTTCAATCT
66 GATAAGATTCGCTATGGTAACTTCAATCT
* * * * **
124902594 GACCCACTGTAACTTCAAGGGTATAGGATTTGTAGCTTCATCTAGCTCCATTGCAACTTCTA-AA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTC-AGGG
*
124902658 AGATAATATTCGCTATGGTAACTTCAAT-T
65 AGATAAGATTCGCTATGGTAACTTCAATCT
* * * * *
124902687 CGACCCACTGCAACTTCAGGGGTATA-GAATTGTAGCTTCATCTTGCTCCATTGCAATTTTAAGG
1 -GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGG
* * *
124902751 AGATAAGACTCGCTATGATAGA-TTTAATCT
65 AGATAAGATTCGCTATGGTA-ACTTCAATCT
* * * * *
124902781 GACCCAATGCAACTTCAGGGGTATCA-GATTTGTAACTTCATCTTGCTCCACTACAATTTTAGGG
1 GACCCACTGCAACTTCAGGGGTAT-AGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGG
*
124902845 AGATAAGACTT-GCTATAGTAGA-TTCAATCT
65 AGATAAGA-TTCGCTATGGTA-ACTTCAATCT
* * * * * *
124902875 GACCCAGTGCAACTTTAAGGGTATGGGATTTGTAGCTTCATCTTGCTCTACTGCAACTTCAAGGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
* * *
124902940 GTTAAGATTCGTTATGGTAACTTCAATCC
66 GATAAGATTCGCTATGGTAACTTCAATCT
* * ** * * * * *
124902969 GACCCAGTGAAACTTCATAGGAATAGGATTTGTAGCTTTATCTTACACTCCACTGCAACTTTAGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTT--GCTCCACTGCAACTTCAGG
* * *
124903034 GAGATAAGATTTGCTATGGTAACTTTAATTT
64 GAGATAAGATTCGCTATGGTAACTTCAATCT
* * * * *
124903065 GACCCACTGCAAATTCAGGGGTATATGATTTGTAACTTCATCTTGCTCCACTACAACTTTAGGGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
* ** *
124903130 GATAGGATTTACTACT-GTAGCTTCAATCT
66 GATAAGATTCGCTA-TGGTAACTTCAATCT
* * * * * *
124903159 GACCCATTACAACTTCAGGGGTATAGGGTTTGTAGTTTCATCTTACTCTACTGCAACTTCAGGGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
124903224 GATAAGATT
66 GATAAGATT
124903233 TGAGGTTTCA
Statistics
Matches: 1078, Mismatches: 201, Indels: 36
0.82 0.15 0.03
Matches are distributed among these distances:
92 1 0.00
93 81 0.08
94 918 0.85
95 4 0.00
96 74 0.07
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (94 bp):
GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
GATAAGATTCGCTATGGTAACTTCAATCT
Found at i:124903313 original size:41 final size:41
Alignment explanation
Indices: 124903267--124903348 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
124903257 CTCTCTAGGG
124903267 AACAGAACCTGTCAAATTCATTTCAAAGGCCTATATTTTAT
1 AACAGAACCTGTCAAATTCATTTCAAAGGCCTATATTTTAT
124903308 AACAGAACCTGTCAAATTCATTTCAAAGGCCTATATTTTAT
1 AACAGAACCTGTCAAATTCATTTCAAAGGCCTATATTTTAT
124903349 GCCAAGTGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.34
Consensus pattern (41 bp):
AACAGAACCTGTCAAATTCATTTCAAAGGCCTATATTTTAT
Found at i:124906658 original size:52 final size:52
Alignment explanation
Indices: 124906581--124906687 Score: 146
Period size: 52 Copynumber: 2.1 Consensus size: 52
124906571 TGACGGAATA
* * *
124906581 GATGTGATATGTGCACCCGTATAAGACCATAGCT-GGCTATGGCATCGGTAT
1 GATGTGATATGTGCACCCGTATAAGACCATAGATGGGATATGGCATCGATAT
*
124906632 GATGTGATAATGTGC-CTCCGTATAAGACCATATATGGGATATGGCATCGATAT
1 GATGTGAT-ATGTGCAC-CCGTATAAGACCATAGATGGGATATGGCATCGATAT
124906685 GAT
1 GAT
124906688 ATGTGATCCG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
51 9 0.18
52 22 0.45
53 18 0.37
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (52 bp):
GATGTGATATGTGCACCCGTATAAGACCATAGATGGGATATGGCATCGATAT
Found at i:124906698 original size:46 final size:50
Alignment explanation
Indices: 124906584--124906708 Score: 134
Period size: 52 Copynumber: 2.5 Consensus size: 50
124906574 CGGAATAGAT
* * *
124906584 GTGATATGTGCACCCGTATAAGACCATAGCTGGCTATGGCATCGGTATGA
1 GTGATATGTGCATCCGTATAAGACCATAGATGGATATGGCATCGGTATGA
* *
124906634 TGTGATAATGTGCCTCCGTATAAGACCATATATGGGATATGGCATC-G-AT-A
1 -GTGAT-ATGTGCATCCGTATAAGACCATAGAT-GGATATGGCATCGGTATGA
*
124906684 -TGATATGTG-ATCCGTGTAAGACCAT
1 GTGATATGTGCATCCGTATAAGACCAT
124906709 GGCAGAGCTA
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
46 14 0.22
47 5 0.08
48 4 0.06
50 1 0.02
51 7 0.11
52 23 0.35
53 11 0.17
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
GTGATATGTGCATCCGTATAAGACCATAGATGGATATGGCATCGGTATGA
Found at i:124912319 original size:12 final size:11
Alignment explanation
Indices: 124912298--124912361 Score: 58
Period size: 12 Copynumber: 5.5 Consensus size: 11
124912288 ATAAAATGAC
*
124912298 AATACTATAAT
1 AATACAATAAT
124912309 GAATACAATAAT
1 -AATACAATAAT
*
124912321 AAGA-AATAAT
1 AATACAATAAT
124912331 AATAACAATAAT
1 AAT-ACAATAAT
124912343 AATATTCAATTAAT
1 AATA--CAA-TAAT
124912357 AATAC
1 AATAC
124912362 TATATGATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
10 8 0.18
11 5 0.11
12 20 0.45
13 3 0.07
14 8 0.18
ACGTcount: A:0.59, C:0.08, G:0.03, T:0.30
Consensus pattern (11 bp):
AATACAATAAT
Found at i:124912396 original size:3 final size:3
Alignment explanation
Indices: 124912315--124912385 Score: 52
Period size: 3 Copynumber: 22.3 Consensus size: 3
124912305 TAATGAATAC
* * * *
124912315 AAT AAT AAGA AAT AAT AAT AAC AAT AAT AAT ATT CAATT AAT AAT ACT
1 AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT -AA-T AAT AAT AAT
* *
124912363 ATAT GAT AAT AAT GAT AAT AAT A
1 A-AT AAT AAT AAT AAT AAT AAT A
124912386 GTGAAATAAT
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
3 45 0.87
4 6 0.12
5 1 0.02
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:124912416 original size:21 final size:19
Alignment explanation
Indices: 124912363--124912420 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 19
124912353 TAATAATACT
*
124912363 ATATGATAATAATGATAATA
1 ATATGATAATAAT-ATAAAA
124912383 ATAGTGA-AATAATATAAAA
1 ATA-TGATAATAATATAAAA
124912402 ATGTATGATAATAATATAA
1 A--TATGATAATAATATAA
124912421 TTACATAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
19 6 0.18
20 12 0.36
21 15 0.45
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (19 bp):
ATATGATAATAATATAAAA
Found at i:124912698 original size:24 final size:22
Alignment explanation
Indices: 124912671--124912715 Score: 54
Period size: 24 Copynumber: 2.0 Consensus size: 22
124912661 AATTTAAAAA
124912671 TATAACAAAATATAAATCATAAAT
1 TATAACAAAATA-AAAT-ATAAAT
**
124912695 TATAAGGAAATAAAATATAAA
1 TATAACAAAATAAAATATAAA
124912716 GGATTAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 4 0.21
24 10 0.53
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.27
Consensus pattern (22 bp):
TATAACAAAATAAAATATAAAT
Found at i:124913765 original size:43 final size:43
Alignment explanation
Indices: 124913717--124914031 Score: 355
Period size: 43 Copynumber: 7.3 Consensus size: 43
124913707 AAAATTAAAA
* * *
124913717 AAACGCCGCTAAAGACCATGACCTTTAACGGCACTTTTTTCGC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
* * * ** *
124913760 AAACGCTGCTAAAGACCATGACCTTTAGAGGTGCTTTTCCCGC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
* * * **
124913803 AAATGTCGCTAAAGACCATGACCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
* * * *
124913846 AAATGCCGCTAAAAACCATGACCTTTAGTGGCGCTTTTGTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
*
124913889 AAACGCCGCTAAAGACCATGACTTTTAGCGGCGC-TTTTTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
* * *
124913931 AAACGCCACTAAAGACCATGACCTTTAGCAGCGCTTTTTTTCAA
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGC-TTTTTTCAC
* * * * * *
124913975 AAACACCGCTATATAACA-AACCTTTAGTGGCGCTTTTTTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
124914017 AAACGCCGCTAAAGA
1 AAACGCCGCTAAAGA
124914032 ATTTAACCTT
Statistics
Matches: 229, Mismatches: 41, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
42 58 0.25
43 151 0.66
44 20 0.09
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
Found at i:124926832 original size:41 final size:40
Alignment explanation
Indices: 124926757--124926835 Score: 99
Period size: 41 Copynumber: 1.9 Consensus size: 40
124926747 CGTTTTCAAT
*
124926757 AAAAACGTCATTATAGTTCAATTTTTTACGGTGTTTTTATC
1 AAAAACGCCATTATAGTTCAATTTTTTAC-GTGTTTTTATC
124926798 AAAAACGCCATTATAGCTT-AACTTTTTGTA-GTGTTTTT
1 AAAAACGCCATTATAG-TTCAA-TTTTT-TACGTGTTTTT
124926836 GGGAAAAACG
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
41 25 0.74
42 7 0.21
43 2 0.06
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.46
Consensus pattern (40 bp):
AAAAACGCCATTATAGTTCAATTTTTTACGTGTTTTTATC
Found at i:124927008 original size:8 final size:8
Alignment explanation
Indices: 124926997--124927079 Score: 96
Period size: 8 Copynumber: 9.9 Consensus size: 8
124926987 ATATTAAATA
124926997 TTAAATTT
1 TTAAATTT
*
124927005 TTAAGTTT
1 TTAAATTT
*
124927013 TT-TATTT
1 TTAAATTT
124927020 TTAAATTT
1 TTAAATTT
124927028 TTAAATTT
1 TTAAATTT
124927036 TTAAATTT
1 TTAAATTT
124927044 TTAAATTTTT
1 TTAAA--TTT
124927054 TTGAAGATTT
1 TT-AA-ATTT
124927064 TTATAATTT
1 TTA-AATTT
124927073 TTAAATT
1 TTAAATT
124927080 ATCATATAAA
Statistics
Matches: 65, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
7 5 0.08
8 38 0.58
9 8 0.12
10 11 0.17
11 2 0.03
12 1 0.02
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.64
Consensus pattern (8 bp):
TTAAATTT
Found at i:124927023 original size:23 final size:24
Alignment explanation
Indices: 124926997--124927079 Score: 96
Period size: 23 Copynumber: 3.3 Consensus size: 24
124926987 ATATTAAATA
* *
124926997 TTAAATTTTTAAGTTTTT-TATTT
1 TTAAATTTTTAAATTTTTAAATTT
124927020 TTAAATTTTTAAATTTTTAAATTT
1 TTAAATTTTTAAATTTTTAAATTT
124927044 TTAAATTTTTTTGAAGATTTTTATAATTT
1 TTAAA--TTTTT-AA-ATTTTTA-AATTT
124927073 TTAAATT
1 TTAAATT
124927080 ATCATATAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
23 17 0.33
24 9 0.17
26 5 0.10
27 4 0.08
28 7 0.13
29 10 0.19
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.64
Consensus pattern (24 bp):
TTAAATTTTTAAATTTTTAAATTT
Found at i:124927854 original size:21 final size:21
Alignment explanation
Indices: 124927808--124927875 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
124927798 AACATAATCT
*
124927808 ATAAACCCTAACCCCTAAGCC
1 ATAAACCCTAACCCCTAAACC
* *
124927829 TTAAACCC-CACCCCTTAAACC
1 ATAAACCCTAACCCC-TAAACC
* * *
124927850 ATAAACCATAATCTCTAAACCC
1 ATAAACCCTAACCCCTAAA-CC
124927872 ATAA
1 ATAA
124927876 TCCATAAACC
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
20 5 0.14
21 22 0.61
22 9 0.25
ACGTcount: A:0.41, C:0.38, G:0.01, T:0.19
Consensus pattern (21 bp):
ATAAACCCTAACCCCTAAACC
Found at i:124927883 original size:15 final size:15
Alignment explanation
Indices: 124927848--124927885 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
124927838 ACCCCTTAAA
124927848 CCATAAA-CCATAAT
1 CCATAAACCCATAAT
124927862 CTC-TAAACCCATAAT
1 C-CATAAACCCATAAT
124927877 CCATAAACC
1 CCATAAACC
124927886 TTAAAATCGT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 15 0.71
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (15 bp):
CCATAAACCCATAAT
Found at i:124927890 original size:22 final size:20
Alignment explanation
Indices: 124927841--124927942 Score: 62
Period size: 21 Copynumber: 4.8 Consensus size: 20
124927831 AAACCCCACC
124927841 CCTTAAACCATAAACCATAA
1 CCTTAAACCATAAACCATAA
* *
124927861 TCTCTAAACCCATAATCCATAAA
1 CCT-TAAA-CCATAAACCAT-AA
* * *
124927884 CCTTAAAATCGT-AACTCACACA
1 CCTT-AAACCATAAAC-CATA-A
* *
124927906 CTTTAAACCTTAAACCATATA
1 CCTTAAACCATAAACCATA-A
*
124927927 CCCTAAACCATAAACC
1 CCTTAAACCATAAACC
124927943 CTAAACTCTA
Statistics
Matches: 60, Mismatches: 15, Indels: 13
0.68 0.17 0.15
Matches are distributed among these distances:
20 2 0.03
21 29 0.48
22 22 0.37
23 7 0.12
ACGTcount: A:0.44, C:0.31, G:0.01, T:0.24
Consensus pattern (20 bp):
CCTTAAACCATAAACCATAA
Found at i:124927935 original size:14 final size:14
Alignment explanation
Indices: 124927909--124927948 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
124927899 TCACACACTT
*
124927909 TAAACCTTAAACCA
1 TAAACCCTAAACCA
*
124927923 TATACCCTAAACCA
1 TAAACCCTAAACCA
124927937 TAAACCCTAAAC
1 TAAACCCTAAAC
124927949 TCTAATGATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:124928089 original size:22 final size:21
Alignment explanation
Indices: 124928043--124928094 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
124928033 AACTACTAAT
*
124928043 TAAT-CTAAACCTTAAACTCC
1 TAATCCTAAACCTTAAACTCA
124928063 TAATCCCTAAACCTTAAAC-CA
1 TAAT-CCTAAACCTTAAACTCA
124928084 TAAATCCTAAA
1 T-AATCCTAAA
124928095 ATATAAACCT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 4 0.14
21 8 0.29
22 16 0.57
ACGTcount: A:0.44, C:0.29, G:0.00, T:0.27
Consensus pattern (21 bp):
TAATCCTAAACCTTAAACTCA
Found at i:124928117 original size:14 final size:14
Alignment explanation
Indices: 124928100--124928130 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
124928090 CTAAAATATA
124928100 AACCTTGAACCCCT
1 AACCTTGAACCCCT
*
124928114 AACCTTTAACCCCT
1 AACCTTGAACCCCT
124928128 AAC
1 AAC
124928131 ACCTAAATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.42, G:0.03, T:0.23
Consensus pattern (14 bp):
AACCTTGAACCCCT
Found at i:124928190 original size:15 final size:15
Alignment explanation
Indices: 124928163--124928200 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
124928153 CTTAAACCAC
124928163 CCTTAAA-CCATAAT
1 CCTTAAACCCATAAT
124928177 CCTTAAACCCATAAT
1 CCTTAAACCCATAAT
*
124928192 CCATAAACC
1 CCTTAAACC
124928201 TTAAAATAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.42, C:0.34, G:0.00, T:0.24
Consensus pattern (15 bp):
CCTTAAACCCATAAT
Found at i:124928195 original size:22 final size:22
Alignment explanation
Indices: 124928161--124928261 Score: 68
Period size: 22 Copynumber: 4.7 Consensus size: 22
124928151 CCCTTAAACC
* *
124928161 ACCCTTAAACCATAATCCTTAA
1 ACCCATAAACCATAAACCTTAA
*
124928183 ACCCATAATCCATAAACCTTAA
1 ACCCATAAACCATAAACCTTAA
* *
124928205 A---ATAGTAACTGATAAACATTAA
1 ACCCATA--AAC-CATAAACCTTAA
* *
124928227 ACCC-TTAACCATATACCTTAA
1 ACCCATAAACCATAAACCTTAA
*
124928248 ACCC-TAAACTATAA
1 ACCCATAAACCATAA
124928262 TGATAATTAA
Statistics
Matches: 60, Mismatches: 13, Indels: 13
0.70 0.15 0.15
Matches are distributed among these distances:
19 3 0.05
21 22 0.37
22 34 0.57
24 1 0.02
ACGTcount: A:0.46, C:0.27, G:0.02, T:0.26
Consensus pattern (22 bp):
ACCCATAAACCATAAACCTTAA
Found at i:124928655 original size:63 final size:63
Alignment explanation
Indices: 124928533--124928655 Score: 156
Period size: 63 Copynumber: 2.0 Consensus size: 63
124928523 AAAACGCCGC
* * * *
124928533 TAAAGCCACTAAAAGCTCAATACAAAACGACGGCATTTTGCAAAATTCTTTGCGGCGTTTTTG
1 TAAAGCCACTAAAAGCTCAATACAAAACCACGGCATTGTGCAAAATTCTTTACGACGTTTTTG
* * ** * *
124928596 TAAAGCCACTAAAGGCTCAATACAAAACCACGGCGTTGTGTTAATTTTTTTACGACGTTT
1 TAAAGCCACTAAAAGCTCAATACAAAACCACGGCATTGTGCAAAATTCTTTACGACGTTT
124928656 AATGCCGCTA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
63 50 1.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (63 bp):
TAAAGCCACTAAAAGCTCAATACAAAACCACGGCATTGTGCAAAATTCTTTACGACGTTTTTG
Found at i:124929024 original size:17 final size:16
Alignment explanation
Indices: 124929002--124929045 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 16
124928992 TGGACTAAAT
*
124929002 TTTATTTGTTTTTGTTG
1 TTTATTTGTTTTTG-AG
*
124929019 TTTATTTATTTTTGAG
1 TTTATTTGTTTTTGAG
124929035 TTT-TTTGTTTT
1 TTTATTTGTTTT
124929046 GTTTTGTCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 7 0.29
16 4 0.17
17 13 0.54
ACGTcount: A:0.09, C:0.00, G:0.14, T:0.77
Consensus pattern (16 bp):
TTTATTTGTTTTTGAG
Found at i:124931787 original size:40 final size:40
Alignment explanation
Indices: 124931725--124931932 Score: 175
Period size: 41 Copynumber: 5.3 Consensus size: 40
124931715 AAGCTAAACT
** * *
124931725 ATAGCGGCGTTTTTGCCAAAAATGCCACTAAAAACTGGTCA
1 ATAGCGGCGTTTTTATC-AAAACGCCACTAAAAACTGATCA
* *
124931766 ATAGCGGCGTTTTTATCAAAATGCCACTAAAAGCTGATCA
1 ATAGCGGCGTTTTTATCAAAACGCCACTAAAAACTGATCA
* *
124931806 ATAGCGGCGTTTTAATCTCAAACGCCACT---AA---AT--
1 ATAGCGGCGTTTTTATC-AAAACGCCACTAAAAACTGATCA
* * * *
124931839 -T-GCGGCGTTTTTGTCCCAAACGCCACAAAAAACTAATCA
1 ATAGCGGCGTTTTTAT-CAAAACGCCACTAAAAACTGATCA
* * *
124931878 ATTGTGGCGTTTTTATCCAAAACGCCACTAAAAACTGATTA
1 ATAGCGGCGTTTTTAT-CAAAACGCCACTAAAAACTGATCA
124931919 ATAGCGGCGTTTTT
1 ATAGCGGCGTTTTT
124931933 GGTCCAAACG
Statistics
Matches: 136, Mismatches: 19, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
31 21 0.15
32 2 0.01
34 2 0.01
35 2 0.01
37 2 0.01
38 1 0.01
40 38 0.28
41 68 0.50
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (40 bp):
ATAGCGGCGTTTTTATCAAAACGCCACTAAAAACTGATCA
Found at i:124931864 original size:112 final size:113
Alignment explanation
Indices: 124931728--124931931 Score: 295
Period size: 112 Copynumber: 1.8 Consensus size: 113
124931718 CTAAACTATA
* * ** *
124931728 GCGGCGTTTTTGCCAAAAATGCCACTAAAAACTGGTCAATAGCGGCGTTTTTAT-CAAAATGCCA
1 GCGGCGTTTTTGCCAAAAACGCCACAAAAAACTAATCAATAGCGGCGTTTTTATCCAAAACGCCA
*
124931792 CTAAAAGCTGATCAATAGCGGCGTTTTAATCTCAAACGCCACTAAATT
66 CTAAAAACTGATCAATAGCGGCGTTTTAATCTCAAACGCCACTAAATT
* * *
124931840 GCGGCGTTTTTGTCC-CAAACGCCACAAAAAACTAATCAATTGTGGCGTTTTTATCCAAAACGCC
1 GCGGCGTTTTTG-CCAAAAACGCCACAAAAAACTAATCAATAGCGGCGTTTTTATCCAAAACGCC
*
124931904 ACTAAAAACTGATTAATAGCGGCGTTTT
65 ACTAAAAACTGATCAATAGCGGCGTTTT
124931932 TGGTCCAAAC
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
112 44 0.55
113 36 0.45
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (113 bp):
GCGGCGTTTTTGCCAAAAACGCCACAAAAAACTAATCAATAGCGGCGTTTTTATCCAAAACGCCA
CTAAAAACTGATCAATAGCGGCGTTTTAATCTCAAACGCCACTAAATT
Found at i:124931887 original size:72 final size:71
Alignment explanation
Indices: 124931769--124931909 Score: 176
Period size: 72 Copynumber: 2.0 Consensus size: 71
124931759 CTGGTCAATA
* * * *
124931769 GCGGCGTTTTTATCAAAATGCCACTAAAAGCTGATCAATAGCGGCGTTTTAATCTC-AAACGCCA
1 GCGGCGTTTTTATCAAAACGCCACAAAAAACTAATCAATAGCGGCGTTTTAATC-CAAAACGCCA
124931833 CTAAATT
65 CTAAATT
* * * * *
124931840 GCGGCGTTTTTGTCCCAAACGCCACAAAAAACTAATCAATTGTGGCGTTTTTATCCAAAACGCCA
1 GCGGCGTTTTTAT-CAAAACGCCACAAAAAACTAATCAATAGCGGCGTTTTAATCCAAAACGCCA
124931905 CTAAA
65 CTAAA
124931910 AACTGATTAA
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
71 13 0.22
72 46 0.78
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (71 bp):
GCGGCGTTTTTATCAAAACGCCACAAAAAACTAATCAATAGCGGCGTTTTAATCCAAAACGCCAC
TAAATT
Found at i:124931942 original size:41 final size:40
Alignment explanation
Indices: 124931840--124931951 Score: 134
Period size: 41 Copynumber: 2.7 Consensus size: 40
124931830 CCACTAAATT
*
124931840 GCGGCGTTTTTGTCCCAAACGCCACAAAAAACTAATCAATT
1 GCGGCGTTTTTGT-CCAAACGCCACAAAAAACTAATCAATA
* * * * *
124931881 GTGGCGTTTTTATCCAAAACGCCACTAAAAACTGATTAATA
1 GCGGCGTTTTTGTCC-AAACGCCACAAAAAACTAATCAATA
*
124931922 GCGGCGTTTTTGGTCCAAACGCCGCAAAAA
1 GCGGCGTTTTT-GTCCAAACGCCACAAAAA
124931952 GTTTGGCAGA
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
40 2 0.03
41 54 0.92
42 3 0.05
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (40 bp):
GCGGCGTTTTTGTCCAAACGCCACAAAAAACTAATCAATA
Found at i:124932294 original size:28 final size:28
Alignment explanation
Indices: 124932234--124932309 Score: 75
Period size: 28 Copynumber: 2.7 Consensus size: 28
124932224 TGGCTTTCTG
* *
124932234 TAAACCCTTAAATCTTAAACATTAAACCC
1 TAAACCC-TAAATCTTAAACATTAAAACA
*
124932263 TAAACCCTAAATTTTAAATCA-TAAAACA
1 TAAACCCTAAATCTTAAA-CATTAAAACA
*
124932291 TAAACGCT-AATCTATAAAC
1 TAAACCCTAAATCT-TAAAC
124932310 TCCAAAACCC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
27 5 0.12
28 26 0.65
29 9 0.22
ACGTcount: A:0.49, C:0.22, G:0.01, T:0.28
Consensus pattern (28 bp):
TAAACCCTAAATCTTAAACATTAAAACA
Found at i:124934274 original size:14 final size:15
Alignment explanation
Indices: 124934255--124934284 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
124934245 TGTGTTTATA
124934255 TAAATACAT-AATTC
1 TAAATACATAAATTC
124934269 TAAATACATAAATTC
1 TAAATACATAAATTC
124934284 T
1 T
124934285 GAAGTTTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAATACATAAATTC
Found at i:124938746 original size:371 final size:371
Alignment explanation
Indices: 124937709--124938992 Score: 2516
Period size: 371 Copynumber: 3.5 Consensus size: 371
124937699 CTTGTCCATT
*
124937709 AAAATTACAACAATAGCTGACTTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
124937774 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
124937839 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG-AAAAAGTTCTATCGAGC
124937904 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
195 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
124937969 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
260 CGATTCTTTTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTA
124938034 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
324 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
124938082 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
124938147 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
124938212 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAACAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA-AGTTCTATCGAGC
124938277 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
195 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
124938342 CGATTCTTTTTTGATATTATTATATTC-AATTACTATTTTTTATATTAATAATGTTTTATTTTAA
260 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
124938406 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
325 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
124938453 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
124938518 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
124938583 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAGTTCTATCGAGCT
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAGTTCTATCGAGCT
124938648 CATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTAC
196 CATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTAC
*
124938713 GATTCTTTTTTGTTATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAAT
261 GATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAAT
124938778 ATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
326 ATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
124938824 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
124938889 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
124938954 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
124938993 TGTTTCAATT
Statistics
Matches: 907, Mismatches: 2, Indels: 6
0.99 0.00 0.01
Matches are distributed among these distances:
370 104 0.11
371 510 0.56
372 12 0.01
373 281 0.31
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (371 bp):
AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAGTTCTATCGAGCT
CATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTAC
GATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAAT
ATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
Found at i:124939106 original size:24 final size:24
Alignment explanation
Indices: 124939079--124939146 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
124939069 ATTATTATTG
*
124939079 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
124939103 AAATATTATTC-TCCGTTTTATTAC
1 AAATATTA-TCGTCCGTTTTATCAC
124939127 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
124939147 CCATTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.05
24 36 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.46
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:124939367 original size:15 final size:15
Alignment explanation
Indices: 124939323--124939378 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
124939313 AACGACATGT
124939323 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
124939339 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
124939352 ATATTATTTAATTAA
1 ATATTATTTAATTAA
124939367 ATATTATTTAAT
1 ATATTATTTAAT
124939379 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:124939495 original size:9 final size:9
Alignment explanation
Indices: 124939483--124939708 Score: 143
Period size: 9 Copynumber: 24.6 Consensus size: 9
124939473 TATTTGATAT
*
124939483 CATAATTTA
1 CATAACTTA
124939492 CATAACTTA
1 CATAACTTA
* *
124939501 TATAACATA
1 CATAACTTA
*
124939510 TATAACTTA
1 CATAACTTA
124939519 CATAACTTA
1 CATAACTTA
* *
124939528 TATAACATA
1 CATAACTTA
124939537 CATAACTTA
1 CATAACTTA
*
124939546 TATAACTTA
1 CATAACTTA
*
124939555 TATAACTTA
1 CATAACTTA
* *
124939564 GATAA-ATA
1 CATAACTTA
*
124939572 TATAACTTA
1 CATAACTTA
124939581 CATAACTTA
1 CATAACTTA
124939590 CATAATACTTA
1 CAT-A-ACTTA
* *
124939601 AATATATTTTATA
1 CATA-A--CT-TA
*
124939614 TCATAATTTA
1 -CATAACTTA
124939624 CATAACTTA
1 CATAACTTA
124939633 CATAACTTA
1 CATAACTTA
*
124939642 TATAACTTA
1 CATAACTTA
* *
124939651 GATAA-ATA
1 CATAACTTA
* *
124939659 TATAATTTA
1 CATAACTTA
*
124939668 CATAA-ATA
1 CATAACTTA
* * *
124939676 TATATCATA
1 CATAACTTA
*
124939685 TCATAAATTA
1 -CATAACTTA
124939695 CATAACTTA
1 CATAACTTA
124939704 CATAA
1 CATAA
124939709 TACTTAAATA
Statistics
Matches: 174, Mismatches: 33, Indels: 20
0.77 0.15 0.09
Matches are distributed among these distances:
8 17 0.10
9 130 0.75
10 11 0.06
11 9 0.05
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:124939505 original size:18 final size:18
Alignment explanation
Indices: 124939483--124939708 Score: 161
Period size: 18 Copynumber: 12.3 Consensus size: 18
124939473 TATTTGATAT
* *
124939483 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
124939501 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
124939519 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
124939537 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
124939555 TATAACTTAGATAA-ATA
1 CATAACTTATATAACTTA
* *
124939572 TATAACTTACATAACTTA
1 CATAACTTATATAACTTA
**
124939590 CATAATACTTAAATATATTTTATA
1 CAT-A-ACTT--ATATA-ACT-TA
* *
124939614 TCATAATTTACATAACTTA
1 -CATAACTTATATAACTTA
124939633 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
124939651 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
124939668 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
124939685 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
124939704 CATAA
1 CATAA
124939709 TACTTAAATA
Statistics
Matches: 164, Mismatches: 34, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
17 38 0.23
18 92 0.56
19 11 0.07
20 5 0.03
21 4 0.02
22 4 0.02
23 4 0.02
24 3 0.02
25 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:124939696 original size:114 final size:114
Alignment explanation
Indices: 124939511--124939732 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
124939501 TATAACATAT
* * *
124939511 ATAACTTACATAACTTATATAACATACATAACTTATATAACTTATATAACTTAGATAAATATATA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
* * *
124939576 ACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTAC
66 AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
* * * * *
124939625 ATAACTTACATAACTTATATAACTTAGATAA-ATATATAATTTACATAAA-TATATATCATATCA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATA-AATAT-A
124939688 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
64 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
124939733 CATAACTAGT
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 5 0.05
113 18 0.19
114 72 0.76
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.39
Consensus pattern (114 bp):
ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
Found at i:124945696 original size:31 final size:31
Alignment explanation
Indices: 124945650--124945716 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
124945640 TGGTTGTATT
* *
124945650 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
124945681 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
124945712 TTTTA
1 TTTTA
124945717 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:124945815 original size:43 final size:42
Alignment explanation
Indices: 124945768--124945862 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 42
124945758 ATCTGCCAAA
* *
124945768 TTTAGCGGCGTTTGTA-AAAAAAGCGCCGCTAAAAGCCTTGACG
1 TTTAGCGGCGCTT-TACAAAAAA-CGCCGCTAAAAGCCTTGACC
* *
124945811 TTTAGCGGCGCTTTACCCACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGCTTTA-CAAAAAACGCCGCTAAAAGCCTTGACC
124945854 TTTAGCGGC
1 TTTAGCGGC
124945863 ATTTTTTTTC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
42 2 0.04
43 40 0.87
44 4 0.09
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.23
Consensus pattern (42 bp):
TTTAGCGGCGCTTTACAAAAAACGCCGCTAAAAGCCTTGACC
Found at i:124956339 original size:42 final size:42
Alignment explanation
Indices: 124956278--124956404 Score: 152
Period size: 42 Copynumber: 3.0 Consensus size: 42
124956268 CTTTGTTTTC
** * *
124956278 TCGATGCCATAGTTCAACTATGGTCTCACACATCTTCACATAA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACAT-A
* *
124956321 T-GATGCCATAGCCCAACTATGGTCTTGCACATATTCATATA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
*
124956362 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAACTATGGTCTTACAC-ATATTCACATA
124956403 TC
1 TC
124956405 TCACTGATGC
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
41 10 0.14
42 61 0.84
43 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
Found at i:124956499 original size:31 final size:31
Alignment explanation
Indices: 124956464--124956643 Score: 234
Period size: 31 Copynumber: 5.8 Consensus size: 31
124956454 CTTGTCACTT
* *
124956464 GTAGCCGGAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
124956495 GTAGCCGGAGCTACCATTTTTCATTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * * *
124956526 GTAGCCGGAGCTACAAATTTTCACTGATAAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
124956557 GTAGCCGAAACTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
** *
124956588 GTAGTAGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
124956619 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
124956644 TGTCATTTGT
Statistics
Matches: 131, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 131 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:124959059 original size:16 final size:16
Alignment explanation
Indices: 124959047--124959077 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
124959037 TGACTCATTG
124959047 CATGTTAGACTCATCA
1 CATGTTAGACTCATCA
124959063 CATGTTAGACTCATC
1 CATGTTAGACTCATC
124959078 TCATCAGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (16 bp):
CATGTTAGACTCATCA
Found at i:124973643 original size:15 final size:15
Alignment explanation
Indices: 124973623--124973654 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
124973613 TTATGTTTCC
124973623 TTATAGTTCCTAATT
1 TTATAGTTCCTAATT
124973638 TTATAGTTCCTAATT
1 TTATAGTTCCTAATT
124973653 TT
1 TT
124973655 GTCACAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.12, G:0.06, T:0.56
Consensus pattern (15 bp):
TTATAGTTCCTAATT
Found at i:124977058 original size:12 final size:12
Alignment explanation
Indices: 124977041--124977065 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
124977031 TCCACATCCT
124977041 CGACCATGACCA
1 CGACCATGACCA
124977053 CGACCATGACCA
1 CGACCATGACCA
124977065 C
1 C
124977066 AATCATTTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.44, G:0.16, T:0.08
Consensus pattern (12 bp):
CGACCATGACCA
Found at i:124989675 original size:13 final size:13
Alignment explanation
Indices: 124989657--124989691 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
124989647 ATTCGCACTA
124989657 GGGCGTGTCACAC
1 GGGCGTGTCACAC
124989670 GGGCGTGTCACAC
1 GGGCGTGTCACAC
124989683 GGGCGTGTC
1 GGGCGTGTC
124989692 CCTGCCGAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.11, C:0.29, G:0.43, T:0.17
Consensus pattern (13 bp):
GGGCGTGTCACAC
Found at i:124989928 original size:16 final size:16
Alignment explanation
Indices: 124989907--124989949 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
124989897 GGAGTTTTGG
124989907 GTTTTCTTTATGTTTT
1 GTTTTCTTTATGTTTT
124989923 GTTTTCTTTATGTTTT
1 GTTTTCTTTATGTTTT
*
124989939 GTATTCTTTAT
1 GTTTTCTTTAT
124989950 TATTTTGAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.09, C:0.07, G:0.12, T:0.72
Consensus pattern (16 bp):
GTTTTCTTTATGTTTT
Found at i:124993759 original size:28 final size:30
Alignment explanation
Indices: 124993727--124993806 Score: 85
Period size: 31 Copynumber: 2.7 Consensus size: 30
124993717 AATTTTGTTT
* *
124993727 CTTTATTTT-TT-TTATGTTTTATTATATG
1 CTTTATTTTATTATTATATTATATTATATG
124993755 CTTTATTTTATTATTATATTATATTATATTG
1 CTTTATTTTATTATTATATTATATTATA-TG
* *
124993786 -TATTAATATATTATTATATTA
1 CT-TTATTTTATTATTATATTA
124993807 ATTTCTTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
28 9 0.20
29 2 0.05
30 14 0.32
31 19 0.43
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.65
Consensus pattern (30 bp):
CTTTATTTTATTATTATATTATATTATATG
Found at i:124993774 original size:8 final size:8
Alignment explanation
Indices: 124993757--124993806 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
124993747 ATTATATGCT
*
124993757 TTATTTTA
1 TTATTATA
124993765 TTATTATA
1 TTATTATA
124993773 TTA-TAT-
1 TTATTATA
*
124993779 TATATTGTA
1 T-TATTATA
*
124993788 TTAATATA
1 TTATTATA
124993796 TTATTATA
1 TTATTATA
124993804 TTA
1 TTA
124993807 ATTTCTTAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
6 1 0.03
7 5 0.15
8 27 0.79
9 1 0.03
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (8 bp):
TTATTATA
Found at i:125006079 original size:11 final size:11
Alignment explanation
Indices: 125006063--125006091 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
125006053 AAATCGGCCA
125006063 ACCATGTATAT
1 ACCATGTATAT
125006074 ACCATGTATAT
1 ACCATGTATAT
125006085 ACCATGT
1 ACCATGT
125006092 GTTGGAAGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (11 bp):
ACCATGTATAT
Found at i:125011890 original size:40 final size:41
Alignment explanation
Indices: 125011842--125012012 Score: 294
Period size: 40 Copynumber: 4.2 Consensus size: 41
125011832 AGTAAATATA
*
125011842 TGCAAACACTCATCTTACCAATGTCAATATGCATATCTGAT
1 TGCAAACACTCATCTCACCAATGTCAATATGCATATCTGAT
*
125011883 TGC-AACACTCATCTCACCAATGTCAATATGCACATCTGAT
1 TGCAAACACTCATCTCACCAATGTCAATATGCATATCTGAT
125011923 TGCAAACACTCATCTCACCAATGTCAATATGCATATCTG-T
1 TGCAAACACTCATCTCACCAATGTCAATATGCATATCTGAT
125011963 TGCAAACACTCATCTCACCAATGTCAATATGCATATCTG-T
1 TGCAAACACTCATCTCACCAATGTCAATATGCATATCTGAT
*
125012003 CGCAAACACT
1 TGCAAACACT
125012013 AGAGTTCCGT
Statistics
Matches: 125, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
40 88 0.70
41 37 0.30
ACGTcount: A:0.33, C:0.28, G:0.10, T:0.29
Consensus pattern (41 bp):
TGCAAACACTCATCTCACCAATGTCAATATGCATATCTGAT
Found at i:125011977 original size:81 final size:80
Alignment explanation
Indices: 125011842--125012012 Score: 290
Period size: 81 Copynumber: 2.1 Consensus size: 80
125011832 AGTAAATATA
*
125011842 TGCAAACACTCATCTTACCAATGTCAATATGCATATCTGATTGCAACACTCATCTCACCAATGTC
1 TGCAAACACTCATCTCACCAATGTCAATATGCATATCTGATTGCAACACTCATCTCACCAATGTC
125011907 AATATGCACATCTGAT
66 AATATGCACATCTG-T
125011923 TGCAAACACTCATCTCACCAATGTCAATATGCATATCTG-TTGCAAACACTCATCTCACCAATGT
1 TGCAAACACTCATCTCACCAATGTCAATATGCATATCTGATTGC-AACACTCATCTCACCAATGT
*
125011987 CAATATGCATATCTGT
65 CAATATGCACATCTGT
*
125012003 CGCAAACACT
1 TGCAAACACT
125012013 AGAGTTCCGT
Statistics
Matches: 86, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
80 14 0.16
81 72 0.84
ACGTcount: A:0.33, C:0.28, G:0.10, T:0.29
Consensus pattern (80 bp):
TGCAAACACTCATCTCACCAATGTCAATATGCATATCTGATTGCAACACTCATCTCACCAATGTC
AATATGCACATCTGT
Found at i:125015600 original size:16 final size:16
Alignment explanation
Indices: 125015574--125015624 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
125015564 GACATAGCTA
*
125015574 TTCTCAAACAACGGTTG
1 TTCT-AAACAACAGTTG
* *
125015591 TTCTAAACAACAATTA
1 TTCTAAACAACAGTTG
*
125015607 TTCCAAACAACAGTTG
1 TTCTAAACAACAGTTG
125015623 TT
1 TT
125015625 TTTCCGGAAG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
16 24 0.86
17 4 0.14
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (16 bp):
TTCTAAACAACAGTTG
Found at i:125016400 original size:16 final size:16
Alignment explanation
Indices: 125016376--125016406 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
125016366 TTTGTTGAGT
*
125016376 ATTGTCAAGACAAGAC
1 ATTGACAAGACAAGAC
125016392 ATTGACAAGACAAGA
1 ATTGACAAGACAAGA
125016407 GACTAATACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.16
Consensus pattern (16 bp):
ATTGACAAGACAAGAC
Found at i:125022552 original size:22 final size:21
Alignment explanation
Indices: 125022508--125022549 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
125022498 TGTTGGCCAC
*
125022508 CCACCTTGGCCACCAACTCCA
1 CCACCTTGGCCACCAAATCCA
125022529 CCACTCTTGGCCACCTAAATC
1 CCAC-CTTGGCCACC-AAATC
125022550 ACCCCAACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 10 0.56
23 4 0.22
ACGTcount: A:0.24, C:0.48, G:0.10, T:0.19
Consensus pattern (21 bp):
CCACCTTGGCCACCAAATCCA
Found at i:125022671 original size:21 final size:21
Alignment explanation
Indices: 125022620--125022693 Score: 87
Period size: 21 Copynumber: 3.4 Consensus size: 21
125022610 GGGTTTTGGG
*
125022620 TTTTTTGGAGGAGGATTGTTCTT
1 TTTTTTGGAGGA-GATT-TTTTT
*
125022643 TGTTTTGGAGGAGATTTTTTT
1 TTTTTTGGAGGAGATTTTTTT
*
125022664 TTTTTTGGAGGTG-TTTTTTT
1 TTTTTTGGAGGAGATTTTTTT
125022684 GTTTTTTGGA
1 -TTTTTTGGA
125022694 AAGAAGGTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
20 7 0.15
21 24 0.52
22 4 0.09
23 11 0.24
ACGTcount: A:0.11, C:0.01, G:0.28, T:0.59
Consensus pattern (21 bp):
TTTTTTGGAGGAGATTTTTTT
Found at i:125023036 original size:3 final size:3
Alignment explanation
Indices: 125023022--125023104 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
125023012 GAGCTTTGTT
* *
125023022 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
125023065 TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
125023105 ATATGCCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 7 0.11
3 49 0.75
4 7 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:125023091 original size:12 final size:12
Alignment explanation
Indices: 125023025--125023104 Score: 76
Period size: 12 Copynumber: 6.8 Consensus size: 12
125023015 CTTTGTTTTA
*
125023025 TTATTTTATTAT
1 TTATATTATTAT
* *
125023037 TTTTACTATTAT
1 TTATATTATTAT
125023049 TTATATTATTA-
1 TTATATTATTAT
* *
125023060 TTAT-TTCTCAT
1 TTATATTATTAT
125023071 GTATATATTATTAT
1 -T-TATATTATTAT
125023085 TTATATTATTA-
1 TTATATTATTAT
125023096 TTATATTAT
1 TTATATTAT
125023105 ATATGCCCTC
Statistics
Matches: 55, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
10 4 0.07
11 13 0.24
12 29 0.53
13 4 0.07
14 5 0.09
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (12 bp):
TTATATTATTAT
Found at i:125023487 original size:19 final size:19
Alignment explanation
Indices: 125023455--125023502 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
125023445 TGTGTATTTC
*
125023455 TATTATATACATATA-TAT
1 TATTATTTACATATAGTAT
*
125023473 ATATTATTTATATATAGTAT
1 -TATTATTTACATATAGTAT
*
125023493 TATTGTTTAC
1 TATTATTTAC
125023503 TTTACTTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 21 0.88
20 3 0.12
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (19 bp):
TATTATTTACATATAGTAT
Found at i:125025934 original size:19 final size:19
Alignment explanation
Indices: 125025912--125025958 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
125025902 CTTCCTTTCT
125025912 TTTGCATT-CATTCCATACA
1 TTTGCATTACATTCCA-ACA
*
125025931 TTTGCATTACATTGCAACA
1 TTTGCATTACATTCCAACA
125025950 TTTGCATTA
1 TTTGCATTA
125025959 AACTTTCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (19 bp):
TTTGCATTACATTCCAACA
Found at i:125028786 original size:8 final size:8
Alignment explanation
Indices: 125028775--125028803 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
125028765 CAAAAAAAAA
125028775 AAAAACAC
1 AAAAACAC
125028783 AAAAACAC
1 AAAAACAC
125028791 AAAAACAC
1 AAAAACAC
125028799 AAAAA
1 AAAAA
125028804 AAATCTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.79, C:0.21, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAACAC
Found at i:125030046 original size:66 final size:66
Alignment explanation
Indices: 125029946--125030072 Score: 236
Period size: 66 Copynumber: 1.9 Consensus size: 66
125029936 CATTCATATA
*
125029946 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACACATT
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
125030011 C
66 C
*
125030012 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACA
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
125030073 TAAGCATAGA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (66 bp):
ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
C
Found at i:125030322 original size:43 final size:43
Alignment explanation
Indices: 125030136--125031078 Score: 596
Period size: 43 Copynumber: 21.7 Consensus size: 43
125030126 ATTCACAAGC
* * * *
125030136 CTTAAGCCCCTAAGCAATAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGA-AGAT
* * *
125030181 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAA-GAT
* * * * * *
125030225 CTTAAACCCCTAATCGGTAGGGTAACAGACCGAA-TTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
* * * *
125030267 CTCATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
* * **
125030310 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
* * * *
125030353 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCAA-ATTTACA-AGC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGA-TGA-AGA-T
* *
125030397 CTTAACCCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGA-AGAT
* * * *
125030442 CTTAACCCCCTAAGTAGTAGGGAAACAGATCGAAGACGAAGGGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAA-GAT
* * * * *
125030486 CTTAAACCCCTAATC-GTAGGGTAACAGACCGAA-TTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
* * *
125030527 CTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
* * **
125030570 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
* * * *
125030613 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCTAA-ATTTACA-AGC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGA-TGA-AGA-T
* * *
125030657 CTTAACCCCCTAAGCAGTAGGGTAACAG-GCTAAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGA-AGAT
* * * **
125030702 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
* ** * *
125030745 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAATTTACAAG-C
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGA-TCGAAGAT-GAAGAT
* * * *
125030789 CTTAAACCCCTAAGCAGTAGGGTAACTG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGA-AGAT
* ** * * **
125030834 CTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
* * * * *
125030877 CTTTAA-CCCCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACAAAC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGA-TCGAAGATGA-AGAT
* * * *
125030920 CTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAAAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGA-AGAT
* * * * *
125030965 CTTAA-CCCCTAACCAGTAGGGTAACAGGTTGAA-TTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGA-AGAT
* * * * * **
125031007 CTTAACCCCTTAAGCAGTTGGGAAATAGATCGAAGATGATGGGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGA-AGAT
* *
125031051 CTTAAACCCCTAAGTAGTAGGGTAACAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAG
125031079 GCTGGAAATT
Statistics
Matches: 707, Mismatches: 147, Indels: 89
0.75 0.16 0.09
Matches are distributed among these distances:
41 13 0.02
42 69 0.10
43 278 0.39
44 193 0.27
45 149 0.21
46 5 0.01
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (43 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGAT
Found at i:125030401 original size:87 final size:87
Alignment explanation
Indices: 125030310--125031077 Score: 457
Period size: 87 Copynumber: 8.8 Consensus size: 87
125030300 AGATGAAGAT
* *
125030310 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGATGAGCTTTAACCCCCTAAGCAGTAGG
125030375 GTAACAAGCCAAATTTACAAGC
66 GTAACAAGCCAAATTTACAAGC
* * * * *
125030397 CTTAACCCCCTAAGCAGTAGGGTAACAG-GCTGAAGAT-TTACAGATCTTAACCCCCTAAGTAGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGATGAT-GAGCT-TTAACCCCCTAAGCAGT
* * * * *
125030460 AGGGAAAC-AGATCGAA--GACGAAGGGT
63 AGGGTAACAAG-CCAAATTTAC-AA--GC
* * * * * * *
125030486 CTTAAACCCCTAATC-GTAGGGTAACAGACCGAA-TTGCA-GATC-TTATCTCCCTAAGCAGTAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATG-ATGAGCTTTAACCCCCTAAGCAGTAG
* * * * *
125030547 GGAAACAGATCGAAGA--T-GAAGAT
65 GGTAACA-AGCCAA-ATTTACAAG-C
* *
125030570 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGATGAGCTTTAACCCCCTAAGCAGTAGG
*
125030635 GTAACAAGCTAAATTTACAAGC
66 GTAACAAGCCAAATTTACAAGC
* * * * *
125030657 CTTAACCCCCTAAGCAGTAGGGTAACAG-GCTAAAGAT-TTACAGATCTTAACCCCCTAAGCAGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGATGAT-GAGCT-TTAACCCCCTAAGCAGT
* * * * ***
125030720 AGGGAAAC-AGATCAAAGATGATGGGC
63 AGGGTAACAAG-CCAAA-TTTACAAGC
* * * * ** * *
125030746 TTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACAAGCCTTAAACCCCTAAGCAGTAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGA-TCGAAGATGATGAGCTTTAACCCCCTAAGCAGTAG
** * *
125030809 GGTAACTGGCTGAAGATTTAC-AGAT
65 GGTAACAAGC-CAA-ATTTACAAG-C
* ** * *
125030834 CTTAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAA-CCCCTAAGCAGTAGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGATGAGCTTTAACCCCCTAAGCAGTAGG
* *
125030898 GTAACAAGCCGAATTTACAAAC
66 GTAACAAGCCAAATTTACAAGC
* * * * ** *
125030920 CTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGAT-TTACAAATCTTAA-CCCCTAACCAGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGATGAT-GAGCT-TTAACCCCCTAAGCAGT
* *** *
125030982 AGGGTAACAGGTTGAATTTAC-AGAT
63 AGGGTAACAAGCCAAATTTACAAG-C
* * * * * * * *
125031007 CTTAACCCCTTAAGCAGTTGGGAAATAGATCGAAGATGATGGGCCTTAAACCCCTAAGTAGTAGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGATGAGCTTTAACCCCCTAAGCAGTAGG
125031072 GTAACA
66 GTAACA
125031078 GGCTGGAAAT
Statistics
Matches: 513, Mismatches: 125, Indels: 86
0.71 0.17 0.12
Matches are distributed among these distances:
83 1 0.00
84 14 0.03
85 43 0.08
86 57 0.11
87 210 0.41
88 130 0.25
89 57 0.11
90 1 0.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21
Consensus pattern (87 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGATGAGCTTTAACCCCCTAAGCAGTAGG
GTAACAAGCCAAATTTACAAGC
Found at i:125030474 original size:132 final size:132
Alignment explanation
Indices: 125030124--125030991 Score: 1158
Period size: 132 Copynumber: 6.6 Consensus size: 132
125030114 TAGAATCAGT
* * *
125030124 GAATTCACAAGCCTTAAGCCCCTAAGCAATAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
1 GAATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
* * * * *
125030189 CCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGG-TCTTAAACCCCTAATCGGTAGGGTAAC-A
66 CCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCT-TTAACCCCCTAAGCAGTAGGGTAACAA
125030252 GACC
130 G-CC
* * * * * * * *
125030256 GAA-TTGC-AGATCTCATCTCCCTAAGCAGTAGGGAAACA-GATCGAAGA-TGA-AGATCTTAAC
1 GAATTTACAAG-CCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGATCTTAAC
125030316 CCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACA
64 CCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACA
125030381 AGCC
129 AGCC
*
125030385 AAATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
1 GAATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
* * * * *
125030450 CCTAAGTAGTAGGGAAACAGATCGAAGACGAAGGG-TCTTAAACCCCTAATC-GTAGGGTAAC-A
66 CCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCT-TTAACCCCCTAAGCAGTAGGGTAACAA
125030512 GACC
130 G-CC
* * * * * * *
125030516 GAA-TTGC-AGATCTTATCTCCCTAAGCAGTAGGGAAACA-GATCGAAGA-TGA-AGATCTTAAC
1 GAATTTACAAG-CCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGATCTTAAC
125030576 CCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACA
64 CCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACA
*
125030641 AGCT
129 AGCC
* *
125030645 AAATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAGATTTACAGATCTTAACCC
1 GAATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
*
125030710 CCTAAGCAGTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAG
66 CCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAG
125030775 CC
131 CC
* *
125030777 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACTGGCTGAAGATTTACAGATCTTAACCC
1 GAATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
** *
125030842 CCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAA-CCCCTAAGCAGTAGGGTAACAAG
66 CCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAG
125030906 CC
131 CC
* * *
125030908 GAATTTACAAACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAA-CC
1 GAATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
* *
125030972 CCTAACCAGTAGGGTAACAG
66 CCTAAGCAGTAGGGAAACAG
125030992 GTTGAATTTA
Statistics
Matches: 649, Mismatches: 66, Indels: 44
0.86 0.09 0.06
Matches are distributed among these distances:
128 56 0.09
129 91 0.14
130 127 0.20
131 139 0.21
132 236 0.36
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (132 bp):
GAATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCC
CCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAG
CC
Found at i:125030546 original size:85 final size:86
Alignment explanation
Indices: 125030136--125030862 Score: 582
Period size: 87 Copynumber: 8.3 Consensus size: 86
125030126 ATTCACAAGC
* * * * *
125030136 CTTAAGCCCCTAAGCAATAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGACCGAAG--TTGCAGATCTTAACCCCCTAAGCAGTAG
125030201 GGAAACAGATCGAAGACGAAGGGT
64 GGAAACAGATCGAAGACGAA-GGT
* * * * * *
125030225 CTTAAACCCCTAATCGGTAGGGTAACAGACCGAA-TTGCAGATCTCATCTCCCTAAGCAGTAGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGACCGAAGTTGCAGATCTTAACCCCCTAAGCAGTAGGG
* *
125030289 AAACAGATCGAAGATGAAGAT
66 AAACAGATCGAAGACGAAGGT
* * * **
125030310 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATG-ATGGGCTTTAACCCCCTAAGCAGTAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGACCGAAGTTGCA-GATC-TTAACCCCCTAAGCAGTAG
* * * * *
125030374 GGTAACA-AGCCAAATTTAC-AA-GC
64 GGAAACAGA-TCGAA--GACGAAGGT
* * * *
125030397 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGTAGTAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGACCGAAG--TTGCAGATCTTAACCCCCTAAGCAGTAG
125030462 GGAAACAGATCGAAGACGAAGGGT
64 GGAAACAGATCGAAGACGAA-GGT
* * * *
125030486 CTTAAACCCCTAATC-GTAGGGTAACAGACCGAA-TTGCAGATCTTATCTCCCTAAGCAGTAGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGACCGAAGTTGCAGATCTTAACCCCCTAAGCAGTAGGG
* *
125030549 AAACAGATCGAAGATGAAGAT
66 AAACAGATCGAAGACGAAGGT
* * * **
125030570 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATG-ATGGGCTTTAACCCCCTAAGCAGTAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGACCGAAGTTGCA-GATC-TTAACCCCCTAAGCAGTAG
* * * * *
125030634 GGTAACA-AGCTAAATTTAC-AA-GC
64 GGAAACAGATC-GAA--GACGAAGGT
* ** *
125030657 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGACCGAAG--TTGCAGATCTTAACCCCCTAAGCAGTAG
* * * *
125030722 GGAAACAGATCAAAGATGATGGG
64 GGAAACAGATCGAAGACGAAGGT
* * * *
125030745 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAATTTACA-AGCCTTAAACCCCTAAGCAGTA
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGA-CCGAAGTTGCAGA-TCTTAACCCCCTAAGCAGTA
* * * ** *
125030808 GGGTAACTG-GCTGAAGATTTACAGAT
63 GGGAAACAGATC-GAAGA-CGA-AGGT
*
125030834 CTTAACCCCCTAAGCAGTAGGGAAACAGA
1 CTTAACCCCCTAAGCAGTAGGGTAACAGA
125030863 TAAAAAATGA
Statistics
Matches: 505, Mismatches: 100, Indels: 66
0.75 0.15 0.10
Matches are distributed among these distances:
84 15 0.03
85 92 0.18
86 59 0.12
87 148 0.29
88 104 0.21
89 85 0.17
90 2 0.00
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (86 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGACCGAAGTTGCAGATCTTAACCCCCTAAGCAGTAGGG
AAACAGATCGAAGACGAAGGT
Found at i:125030609 original size:260 final size:261
Alignment explanation
Indices: 125030125--125030991 Score: 1345
Period size: 260 Copynumber: 3.3 Consensus size: 261
125030115 AGAATCAGTG
* * *
125030125 AATTCACAAGCCTTAAGCCCCTAAGCAATAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
1 AATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
*
125030190 CTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGAC
66 CTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCAGTAGGGTAACAGAC
*
125030255 CGAATTGCAGATCTCATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCC
131 CGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCC
125030320 TAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCC
196 TAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCC
125030385 A
261 A
125030386 AATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
1 AATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
*
125030451 CTAAGTAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATC-GTAGGGTAACAGAC
66 CTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCAGTAGGGTAACAGAC
125030515 CGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCC
131 CGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCC
*
125030580 TAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCT
196 TAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCC
125030645 A
261 A
*
125030646 AATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAGATTTACAGATCTTAACCCC
1 AATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
* * * * *
125030711 CTAAGCAGTAGGGAAACAGATCAAAGATGATGGG-CTTTAACCCCCTAAGCAGTAGGGTAACA-A
66 CTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTC-TTAAACCCCTAATCAGTAGGGTAACAGA
* * * * * * *
125030774 GCCGAATTTACA-AGCCTTAAAC-CCCTAAGCAGTAGGGTAACTG-GCTGAAGATTTACAGATCT
130 -CCGAA-TTGCAGA-TCTT-ATCTCCCTAAGCAGTAGGGAAACAGATC-GAAGA-TGA-AGATCT
** *
125030836 TAACCCCCTAAGCAGTAGGGAAACAGATAAAAAATGATGGGCTTTAA-CCCCTAAGCAGTAGGGT
188 TAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGT
*
125030900 AACAAGCCG
253 AACAAGCCA
* * *
125030909 AATTTACAAACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAA-CCC
1 AATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
* *
125030973 CTAACCAGTAGGGTAACAG
66 CTAAGCAGTAGGGAAACAG
125030992 GTTGAATTTA
Statistics
Matches: 566, Mismatches: 31, Indels: 17
0.92 0.05 0.03
Matches are distributed among these distances:
259 1 0.00
260 250 0.44
261 129 0.23
262 51 0.09
263 85 0.15
264 50 0.09
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (261 bp):
AATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCC
CTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCAGTAGGGTAACAGAC
CGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCCC
TAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCC
A
Found at i:125031213 original size:68 final size:68
Alignment explanation
Indices: 125031096--125031294 Score: 303
Period size: 68 Copynumber: 2.9 Consensus size: 68
125031086 ATTACAAATT
*
125031096 TCTTTT-TCCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG-
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
*
125031159 AGGA
66 A-AA
* *
125031163 TCTTTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGC
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
125031228 AAA
66 AAA
* * * *
125031231 CCTCTTCTTCCAGAAATGGCATTGGAGAGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
125031295 TGGAAGAAGA
Statistics
Matches: 120, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
67 6 0.05
68 113 0.94
69 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (68 bp):
TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
AAA
Found at i:125031453 original size:44 final size:44
Alignment explanation
Indices: 125031405--125031869 Score: 394
Period size: 44 Copynumber: 10.6 Consensus size: 44
125031395 GATTTCAGCA
* *
125031405 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * *
125031449 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * * * *
125031493 TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ATATCAG-ATT
*
125031537 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * *
125031581 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * * * *
125031625 TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ATATCAG-ATT
*
125031669 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * *
125031713 T-GCATCCCTGTGCTTATAGGGAACAA-ATCAAAGATAACAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAA-ATATCAGATT
* * * * * * *
125031756 TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ATATCAG-ATT
*
125031800 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
*
125031844 TGGCATCCCTGTACTTATAGGGAACA
1 TGGCATCCCTGTGCTTATAGGGAACA
125031870 GATCGAAGAT
Statistics
Matches: 332, Mismatches: 69, Indels: 40
0.75 0.16 0.09
Matches are distributed among these distances:
42 7 0.02
43 51 0.15
44 246 0.74
45 25 0.08
46 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (44 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
Done.