Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 402 of 438
Found at i:125233326 original size:22 final size:24
Alignment explanation
Indices: 125233285--125233328 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
125233275 AACAAAGATA
125233285 TAAATTAAAACATTATATCATTCC
1 TAAATTAAAACATTATATCATTCC
*
125233309 TAAATTAACA-ATTA-ATCATT
1 TAAATTAAAACATTATATCATT
125233329 AAAGTTCAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 4 0.21
24 9 0.47
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.39
Consensus pattern (24 bp):
TAAATTAAAACATTATATCATTCC
Found at i:125234609 original size:16 final size:17
Alignment explanation
Indices: 125234590--125234622 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
125234580 AATTTTATAG
125234590 ATTTTA-ATAATTATTA
1 ATTTTATATAATTATTA
*
125234606 ATTTTATATATTTATTA
1 ATTTTATATAATTATTA
125234623 TACATGTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTTATATAATTATTA
Found at i:125244416 original size:5 final size:5
Alignment explanation
Indices: 125244406--125244437 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
125244396 GAGGCTGTGA
125244406 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
125244438 GAACACATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:125244431 original size:9 final size:9
Alignment explanation
Indices: 125244407--125244437 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
125244397 AGGCTGTGAA
125244407 AAATAAAAT
1 AAATAAAAT
125244416 AAAATAAAAT
1 -AAATAAAAT
125244426 AAATAAAAT
1 AAATAAAAT
125244435 AAA
1 AAA
125244438 GAACACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:125248634 original size:44 final size:44
Alignment explanation
Indices: 125248571--125248702 Score: 264
Period size: 44 Copynumber: 3.0 Consensus size: 44
125248561 GGTGGAGGGA
125248571 TGTATTGTTATACAATTATACATATGATTGCCTATGAGCTTTAC
1 TGTATTGTTATACAATTATACATATGATTGCCTATGAGCTTTAC
125248615 TGTATTGTTATACAATTATACATATGATTGCCTATGAGCTTTAC
1 TGTATTGTTATACAATTATACATATGATTGCCTATGAGCTTTAC
125248659 TGTATTGTTATACAATTATACATATGATTGCCTATGAGCTTTAC
1 TGTATTGTTATACAATTATACATATGATTGCCTATGAGCTTTAC
125248703 ATGTTAGTGC
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 88 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.43
Consensus pattern (44 bp):
TGTATTGTTATACAATTATACATATGATTGCCTATGAGCTTTAC
Found at i:125250616 original size:12 final size:12
Alignment explanation
Indices: 125250599--125250624 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
125250589 ATTTCTTAAG
125250599 TAGTTTTATTAT
1 TAGTTTTATTAT
125250611 TAGTTTTATTAT
1 TAGTTTTATTAT
125250623 TA
1 TA
125250625 ACTAGTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (12 bp):
TAGTTTTATTAT
Found at i:125259706 original size:12 final size:12
Alignment explanation
Indices: 125259689--125259732 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
125259679 ATAGGAAAAC
125259689 AAAATAAACATA
1 AAAATAAACATA
*
125259701 AAAATAAAAATA
1 AAAATAAACATA
125259713 AAAATAAACATA
1 AAAATAAACATA
*
125259725 AAGATAAA
1 AAAATAAA
125259733 TGGACTCAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.16
Consensus pattern (12 bp):
AAAATAAACATA
Found at i:125259707 original size:6 final size:6
Alignment explanation
Indices: 125259689--125259732 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
125259679 ATAGGAAAAC
* * *
125259689 AAAATA AACATA AAAATA AAAATA AAAATA AACATA AAGATA AA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AA
125259733 TGGACTCAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:125265137 original size:21 final size:21
Alignment explanation
Indices: 125265113--125265154 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
125265103 ATAAGTTAGT
*
125265113 AAATTTAAATAAAAACAAAAA
1 AAATTGAAATAAAAACAAAAA
* *
125265134 AAATTGCAATAAAAATAAAAA
1 AAATTGAAATAAAAACAAAAA
125265155 TGGCCAAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (21 bp):
AAATTGAAATAAAAACAAAAA
Found at i:125267925 original size:15 final size:15
Alignment explanation
Indices: 125267883--125267926 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
125267873 AATTTGGGAG
125267883 AGTTTGGGCAAAAAT
1 AGTTTGGGCAAAAAT
*
125267898 A-TTTGGCCCAAAAAT
1 AGTTTGG-GCAAAAAT
*
125267913 AGTTTGGGTAAAAA
1 AGTTTGGGCAAAAA
125267927 AATTAAGCTC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 5 0.21
15 14 0.58
16 5 0.21
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (15 bp):
AGTTTGGGCAAAAAT
Found at i:125268414 original size:26 final size:30
Alignment explanation
Indices: 125268376--125268438 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 30
125268366 CCCCTGAGGC
125268376 TATATATAAAATT-TT-AATA-AATAAAAA
1 TATATATAAAATTATTAAATATAATAAAAA
*
125268403 T-TATATAAAATTATTAAATATAATATAAA
1 TATATATAAAATTATTAAATATAATAAAAA
125268432 TATATAT
1 TATATAT
125268439 TTTAAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
26 11 0.35
27 3 0.10
28 4 0.13
29 8 0.26
30 5 0.16
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (30 bp):
TATATATAAAATTATTAAATATAATAAAAA
Found at i:125268917 original size:21 final size:22
Alignment explanation
Indices: 125268893--125268934 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
125268883 TAAATAAATG
*
125268893 ACTTT-TATGTAAAAAAAAAGC
1 ACTTTATATGCAAAAAAAAAGC
125268914 ACTTTAATATGCAAAAAAAAA
1 ACTTT-ATATGCAAAAAAAAA
125268935 TTAATTAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
23 13 0.72
ACGTcount: A:0.57, C:0.10, G:0.07, T:0.26
Consensus pattern (22 bp):
ACTTTATATGCAAAAAAAAAGC
Found at i:125269172 original size:28 final size:25
Alignment explanation
Indices: 125269102--125269172 Score: 72
Period size: 28 Copynumber: 2.7 Consensus size: 25
125269092 TGGTTTAATC
125269102 TAAA-TTATATTTTTTATAATTTTTA
1 TAAATTTATATTTTTT-TAATTTTTA
**
125269127 TAAATTTATATGAATTTTAATTTTTTAA
1 TAAATTTATAT-TTTTTTAA-TTTTT-A
125269155 TAAATTTAATATTTTTTT
1 TAAATTT-ATATTTTTTT
125269173 CTTATTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
25 4 0.11
26 9 0.24
27 8 0.22
28 12 0.32
29 4 0.11
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (25 bp):
TAAATTTATATTTTTTTAATTTTTA
Found at i:125269992 original size:21 final size:20
Alignment explanation
Indices: 125269968--125270007 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
125269958 ATATTTTCAT
*
125269968 TATTTCATAACATATTAATAA
1 TATTTCATAAAAT-TTAATAA
*
125269989 TATTTTATAAAATTTAATA
1 TATTTCATAAAATTTAATA
125270008 GTATCATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (20 bp):
TATTTCATAAAATTTAATAA
Found at i:125277501 original size:38 final size:38
Alignment explanation
Indices: 125277407--125277504 Score: 128
Period size: 38 Copynumber: 2.6 Consensus size: 38
125277397 ATAATACAAA
*
125277407 AACAATAGACATGCTTAACATGTATTCAGTTCAACTAT
1 AACAATAGACATGCTTAACATGTATTCAATTCAACTAT
* *
125277445 AGA-AGTAGGCATGCTTAACATGTATTCAATTCAAC-AGT
1 A-ACAATAGACATGCTTAACATGTATTCAATTCAACTA-T
*
125277483 AACAATAGACATGTTTAACATG
1 AACAATAGACATGCTTAACATG
125277505 CATCTGGTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
37 2 0.04
38 48 0.94
39 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (38 bp):
AACAATAGACATGCTTAACATGTATTCAATTCAACTAT
Found at i:125277514 original size:16 final size:16
Alignment explanation
Indices: 125277495--125277525 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
125277485 CAATAGACAT
125277495 GTTTAACATGCATCTG
1 GTTTAACATGCATCTG
125277511 GTTTAACATGCATCT
1 GTTTAACATGCATCT
125277526 AATTCAACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (16 bp):
GTTTAACATGCATCTG
Found at i:125279341 original size:13 final size:14
Alignment explanation
Indices: 125279325--125279357 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
125279315 TATCAAAAAA
125279325 TTTAAATAT-ATAT
1 TTTAAATATCATAT
*
125279338 TTTAAATTTCATAT
1 TTTAAATATCATAT
125279352 TTTAAA
1 TTTAAA
125279358 AGGTTATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (14 bp):
TTTAAATATCATAT
Found at i:125284294 original size:15 final size:16
Alignment explanation
Indices: 125284273--125284309 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
125284263 TTTTTTAATT
125284273 TTAAAAAATAAATAAA
1 TTAAAAAATAAATAAA
*
125284289 -TAAAAAATAACTAAA
1 TTAAAAAATAAATAAA
125284304 TTAAAA
1 TTAAAA
125284310 TAGAGAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (16 bp):
TTAAAAAATAAATAAA
Found at i:125286419 original size:19 final size:22
Alignment explanation
Indices: 125286395--125286449 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 22
125286385 TTATTACTTT
125286395 ATTATTATATAT-TA-AAAA-A
1 ATTATTATATATCTATAAAATA
*
125286414 ATTATTTTATATCTATAAAATA
1 ATTATTATATATCTATAAAATA
125286436 ATGTATATATATAT
1 AT-TAT-TATATAT
125286450 GTGTATGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
19 11 0.38
20 2 0.07
21 4 0.14
22 3 0.10
23 3 0.10
24 6 0.21
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (22 bp):
ATTATTATATATCTATAAAATA
Found at i:125291366 original size:22 final size:20
Alignment explanation
Indices: 125291329--125291371 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
125291319 AATAGGATAA
*
125291329 AAAAAAATAAAAAAAATATT
1 AAAAAAATAAAAAAAAAATT
*
125291349 AAAATAATACAAAGAAAAAATT
1 AAAAAAATA-AAA-AAAAAATT
125291371 A
1 A
125291372 TGTACCAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 8 0.42
21 3 0.16
22 8 0.42
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (20 bp):
AAAAAAATAAAAAAAAAATT
Found at i:125291916 original size:29 final size:28
Alignment explanation
Indices: 125291869--125291933 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
125291859 TATTAAAATA
* *
125291869 AAGGGCTTTTTTGAGTAAAACTATAAGTT
1 AAGGGCTTTTTTGACTAAAA-AATAAGTT
*
125291898 AAGGGCTTATTTT-ACTAAAAAATAGGTT
1 AAGGGCTT-TTTTGACTAAAAAATAAGTT
125291926 AAGGGCTT
1 AAGGGCTT
125291934 GTTTAAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 14 0.44
29 14 0.44
30 4 0.12
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (28 bp):
AAGGGCTTTTTTGACTAAAAAATAAGTT
Found at i:125296491 original size:6 final size:6
Alignment explanation
Indices: 125296480--125296527 Score: 62
Period size: 6 Copynumber: 8.0 Consensus size: 6
125296470 GTCAAACACC
* *
125296480 GAAGAT GAAGAT GAAGAT GAAGAT -AACAT TAGAGAT GAAGAT GAAGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GA-AGAT GAAGAT GAAGAT
125296528 TGTAACGACT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
5 4 0.11
6 29 0.78
7 4 0.11
ACGTcount: A:0.50, C:0.02, G:0.29, T:0.19
Consensus pattern (6 bp):
GAAGAT
Found at i:125297927 original size:49 final size:49
Alignment explanation
Indices: 125297855--125297954 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
125297845 CCGGATTAGA
125297855 GTCAAATCTAATAAGGGGATCCATAGATCGAGTTAATGCGACAATAGGG
1 GTCAAATCTAATAAGGGGATCCATAGATCGAGTTAATGCGACAATAGGG
*
125297904 GTCAAATCTAATAAGGGGATCCATAGATCGAGTTAATGCGACGATAGGG
1 GTCAAATCTAATAAGGGGATCCATAGATCGAGTTAATGCGACAATAGGG
125297953 GT
1 GT
125297955 TTTAATTAGA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (49 bp):
GTCAAATCTAATAAGGGGATCCATAGATCGAGTTAATGCGACAATAGGG
Found at i:125301819 original size:10 final size:12
Alignment explanation
Indices: 125301787--125301823 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
125301777 TTTTCTTTCA
*
125301787 TCCCCATCTCTT
1 TCCCCCTCTCTT
125301799 TCCCCCTCTCTT
1 TCCCCCTCTCTT
125301811 TCCCCCTCTCTT
1 TCCCCCTCTCTT
125301823 T
1 T
125301824 TCACTTCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.03, C:0.54, G:0.00, T:0.43
Consensus pattern (12 bp):
TCCCCCTCTCTT
Found at i:125301955 original size:5 final size:5
Alignment explanation
Indices: 125301945--125302001 Score: 53
Period size: 6 Copynumber: 10.6 Consensus size: 5
125301935 TCTGAGTCTA
125301945 TTTAT TTTAT TTCT-T TTTATT TTTATT TTTATT TTTATT TTTAT TTTAT
1 TTTAT TTTAT TT-TAT TTTA-T TTTA-T TTTA-T TTTA-T TTTAT TTTAT
*
125301994 TTAAT TTT
1 TTTAT TTT
125302002 CTTAAGACTT
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
4 1 0.02
5 22 0.47
6 24 0.51
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:125301969 original size:6 final size:6
Alignment explanation
Indices: 125301958--125301995 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
125301948 ATTTTATTTC
125301958 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
125301996 AATTTTCTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.16
6 26 0.84
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:125301981 original size:18 final size:17
Alignment explanation
Indices: 125301945--125301995 Score: 70
Period size: 18 Copynumber: 3.1 Consensus size: 17
125301935 TCTGAGTCTA
*
125301945 TTTA-TTTTA-TTTCTT
1 TTTATTTTTATTTTATT
125301960 TTTATTTTTATTTTTATT
1 TTTATTTTTA-TTTTATT
125301978 TTTATTTTTATTTTATT
1 TTTATTTTTATTTTATT
125301995 T
1 T
125301996 AATTTTCTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
15 4 0.12
16 5 0.16
17 8 0.25
18 15 0.47
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTATTTTTATTTTATT
Found at i:125302743 original size:33 final size:33
Alignment explanation
Indices: 125302688--125302766 Score: 113
Period size: 33 Copynumber: 2.4 Consensus size: 33
125302678 CTAAGATTTT
*
125302688 ATTATTATTAATTATTAGTATGGTTTTATATTAA
1 ATTATTATT-ATTATTAGTATGGTTTCATATTAA
*
125302722 ATTATTATTATTATTATTATGGTTTCATATTAA
1 ATTATTATTATTATTAGTATGGTTTCATATTAA
* *
125302755 GTTATAATTATT
1 ATTATTATTATT
125302767 TAATTGGTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 32 0.78
34 9 0.22
ACGTcount: A:0.34, C:0.01, G:0.08, T:0.57
Consensus pattern (33 bp):
ATTATTATTATTATTAGTATGGTTTCATATTAA
Found at i:125302991 original size:23 final size:22
Alignment explanation
Indices: 125302963--125303019 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
125302953 ATAATGACAA
*
125302963 TTGTAATAAAA-ATATTGGTACAT
1 TTGTAATAAAAGATA-T-GTACAC
125302986 TTGTAATAAATAGATATGTACAC
1 TTGTAATAAA-AGATATGTACAC
125303009 TTGTAATAAAA
1 TTGTAATAAAA
125303020 TAATTAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
22 1 0.03
23 25 0.81
24 2 0.06
25 3 0.10
ACGTcount: A:0.46, C:0.05, G:0.12, T:0.37
Consensus pattern (22 bp):
TTGTAATAAAAGATATGTACAC
Found at i:125307182 original size:19 final size:19
Alignment explanation
Indices: 125307133--125307176 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
125307123 GGTATAGAAC
125307133 ACACGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGG
125307152 ACACGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGG
125307171 ACACGC
1 ACACGC
125307177 TTGTGTCCCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.18, C:0.34, G:0.34, T:0.14
Consensus pattern (19 bp):
ACACGCCCGTGTGCTAGGG
Found at i:125309093 original size:46 final size:46
Alignment explanation
Indices: 125308943--125309207 Score: 220
Period size: 46 Copynumber: 5.7 Consensus size: 46
125308933 AGGGTATAAT
* * *
125308943 GCCGATGCCATGTCCCAGACGTGGTCTTACACTGGCTCTTACATATCTGTA-
1 GCCGATG-CATGTCCTAGACAT-GTCTTACACTGGCTC--ACATCTC-G-AG
* * * *
125308994 -CCGATGCGTGTCCCAGACATGTCTTACACTAG--CACATCTC-ACC
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTCACATCTCGA-G
*
125309037 GCTGATGCATGTCCTAGACATGTCTTACACTGGCTCACATCTCGAG
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTCACATCTCGAG
* * ** *
125309083 GCCGATGCATGTCCTAGACATGTCTTACACTAGCTCTCATCTTAAT
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTCACATCTCGAG
* * * *
125309129 GCTGATGCCATGTCCTAAACATGGTCTTACACTGGCTCTA-ATAAT-GTG
1 GCCGATG-CATGTCCTAGACAT-GTCTTACACTGGCTC-ACAT-CTCGAG
*
125309177 GCCGATGCATGTCCTAAACATGTCTTACACT
1 GCCGATGCATGTCCTAGACATGTCTTACACT
125309208 AGCATACACA
Statistics
Matches: 180, Mismatches: 24, Indels: 25
0.79 0.10 0.11
Matches are distributed among these distances:
41 1 0.01
44 34 0.19
46 65 0.36
47 28 0.16
48 33 0.18
49 13 0.07
50 6 0.03
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCTAGACATGTCTTACACTGGCTCACATCTCGAG
Found at i:125309184 original size:94 final size:93
Alignment explanation
Indices: 125308939--125309210 Score: 329
Period size: 94 Copynumber: 2.9 Consensus size: 93
125308929 ACATAGGGTA
* * * * * *
125308939 TAATGCCGATGCCATGTCCCAGACGTGGTCTTACACTGGCTCTTACATATCTGTACCGATGCGTG
1 TAATGCTGATGCCATGTCCTAGACATGGTCTTACACTGGCTC-TACATATGTG-GCCGATGCATG
*
125309004 TCCCAGACATGTCTTACACTAG-CACATCT
64 TCCTAGACATGTCTTACACTAGCCACATCT
* ** * *
125309033 CACCGCTGATG-CATGTCCTAGACAT-GTCTTACACTGGCTC-ACATCTCGAGGCCGATGCATGT
1 TAATGCTGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTACATAT-GTGGCCGATGCATGT
*
125309095 CCTAGACATGTCTTACACTAGCTCTCATCT
65 CCTAGACATGTCTTACACTAGC-CACATCT
*
125309125 TAATGCTGATGCCATGTCCTAAACATGGTCTTACACTGGCTCTA-ATAATGTGGCCGATGCATGT
1 TAATGCTGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTACAT-ATGTGGCCGATGCATGT
*
125309189 CCTAAACATGTCTTACACTAGC
65 CCTAGACATGTCTTACACTAGC
125309211 ATACACACAT
Statistics
Matches: 151, Mismatches: 20, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
90 35 0.23
91 1 0.01
92 29 0.19
93 25 0.17
94 59 0.39
95 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (93 bp):
TAATGCTGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTACATATGTGGCCGATGCATGTC
CTAGACATGTCTTACACTAGCCACATCT
Found at i:125311023 original size:2 final size:2
Alignment explanation
Indices: 125311018--125311048 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
125311008 TATTTCCCGC
125311018 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
125311049 ACCATAATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:125320441 original size:46 final size:45
Alignment explanation
Indices: 125320381--125320646 Score: 339
Period size: 46 Copynumber: 6.0 Consensus size: 45
125320371 TTTGACATGA
* * * * * *
125320381 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
*** *
125320427 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
125320473 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
*
125320519 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
125320565 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
125320603 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAG
125320647 AGAGCACACT
Statistics
Matches: 197, Mismatches: 13, Indels: 20
0.86 0.06 0.09
Matches are distributed among these distances:
38 34 0.17
40 3 0.02
43 1 0.01
44 3 0.02
45 4 0.02
46 149 0.76
47 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
Found at i:125320610 original size:38 final size:38
Alignment explanation
Indices: 125320559--125320634 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
125320549 ACATTTTATA
125320559 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
125320597 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
125320635 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:125322799 original size:11 final size:11
Alignment explanation
Indices: 125322783--125322834 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
125322773 TATACTAAAT
125322783 AAATAATAATA
1 AAATAATAATA
*
125322794 AAATAAT-ATT
1 AAATAATAATA
* *
125322804 AAATATCTCATA
1 AAATA-ATAATA
*
125322816 AAATATTAATA
1 AAATAATAATA
125322827 AAATAATA
1 AAATAATA
125322835 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:125324872 original size:32 final size:30
Alignment explanation
Indices: 125324798--125324879 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 30
125324788 GTATACAATT
* *
125324798 GTAACATAAATATTTAATTACTTTTTATTTAA
1 GTAA-ATAGATATTT-ATTACTTATTATTTAA
125324830 GTAAATAGATATTTATTACTTATTATTATTAA
1 GTAAATAGATATTTATTACTTATTA-T-TTAA
125324862 GTTAAA-AGATATTTATTA
1 G-TAAATAGATATTTATTA
125324880 ATTAAATAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
30 10 0.22
31 10 0.22
32 21 0.47
33 4 0.09
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (30 bp):
GTAAATAGATATTTATTACTTATTATTTAA
Found at i:125325266 original size:3 final size:3
Alignment explanation
Indices: 125325258--125325305 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
125325248 AAAAATATAT
125325258 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
125325306 ATTAGTATAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:125329244 original size:15 final size:15
Alignment explanation
Indices: 125329224--125329255 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
125329214 CCGACCTATA
125329224 ATCAAATATAATTCT
1 ATCAAATATAATTCT
125329239 ATCAAATATAATTCT
1 ATCAAATATAATTCT
125329254 AT
1 AT
125329256 GGATCTAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (15 bp):
ATCAAATATAATTCT
Found at i:125337663 original size:7 final size:7
Alignment explanation
Indices: 125337644--125337678 Score: 61
Period size: 7 Copynumber: 4.9 Consensus size: 7
125337634 AACTTGGAAT
125337644 ATAATATA
1 ATAATA-A
125337652 ATAATAA
1 ATAATAA
125337659 ATAATAA
1 ATAATAA
125337666 ATAATAA
1 ATAATAA
125337673 ATAATA
1 ATAATA
125337679 CAAACAAGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 21 0.78
8 6 0.22
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
ATAATAA
Found at i:125338209 original size:8 final size:9
Alignment explanation
Indices: 125338195--125338219 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
125338185 ATATTTTAAA
125338195 AGTTTTTAT
1 AGTTTTTAT
125338204 AGTTTTTAT
1 AGTTTTTAT
125338213 AGTTTTT
1 AGTTTTT
125338220 TTTTTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (9 bp):
AGTTTTTAT
Found at i:125338799 original size:19 final size:18
Alignment explanation
Indices: 125338774--125338821 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
125338764 ATATCTAAAT
*
125338774 AATTTAATTTATGAAAAA
1 AATTTAATTTAAGAAAAA
** *
125338792 ACATTTAAAATAAGAAAAT
1 A-ATTTAATTTAAGAAAAA
125338811 AATTTAATTTA
1 AATTTAATTTA
125338822 CGAATAATAG
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (18 bp):
AATTTAATTTAAGAAAAA
Found at i:125348027 original size:63 final size:63
Alignment explanation
Indices: 125347928--125348048 Score: 188
Period size: 63 Copynumber: 1.9 Consensus size: 63
125347918 GAAATGATGG
* * * *
125347928 ATTGGATATACCTTTGGTACAGTAAAGCCTCCGGTTCCTACCCAGACATGTATCGCCATTCCA
1 ATTGGATATACCATTGGTACAGTAAAACCTCCGGTTCCTACCCAGACAGGTACCGCCATTCCA
* *
125347991 ATTGGATATATCATTGGTACAGTAAAACCTCCGGTTCCTACCTAGACAGGTACCGCCA
1 ATTGGATATACCATTGGTACAGTAAAACCTCCGGTTCCTACCCAGACAGGTACCGCCA
125348049 CCCCAATGAC
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 52 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (63 bp):
ATTGGATATACCATTGGTACAGTAAAACCTCCGGTTCCTACCCAGACAGGTACCGCCATTCCA
Found at i:125349588 original size:19 final size:19
Alignment explanation
Indices: 125349564--125349603 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
125349554 AAATTTATGA
* *
125349564 AAGTTTGAGTAAAAATATT
1 AAGTTTAAGTAAAAAAATT
125349583 AAGTTTAAGTAAAAAAATT
1 AAGTTTAAGTAAAAAAATT
125349602 AA
1 AA
125349604 ACCTATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (19 bp):
AAGTTTAAGTAAAAAAATT
Found at i:125349748 original size:24 final size:25
Alignment explanation
Indices: 125349721--125349770 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
125349711 AAAATTTTAA
*
125349721 TAAATAAAAAATATTTTAAAT-TAT
1 TAAATAAAAAATAATTTAAATATAT
**
125349745 TAAATATTAAATAATTTAAATATAT
1 TAAATAAAAAATAATTTAAATATAT
125349770 T
1 T
125349771 TTTAATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
TAAATAAAAAATAATTTAAATATAT
Found at i:125359934 original size:46 final size:44
Alignment explanation
Indices: 125359875--125359989 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
125359865 ACAGGACAGA
* *
125359875 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
125359921 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
125359965 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
125359990 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:125359970 original size:44 final size:45
Alignment explanation
Indices: 125359875--125360008 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
125359865 ACAGGACAGA
* *
125359875 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
125359921 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
125359965 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
125360009 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:125365869 original size:46 final size:44
Alignment explanation
Indices: 125365810--125365924 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
125365800 ACAGGACAGA
* *
125365810 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
125365856 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
125365900 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
125365925 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:125365905 original size:44 final size:45
Alignment explanation
Indices: 125365810--125365943 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
125365800 ACAGGACAGA
* *
125365810 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
125365856 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
125365900 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
125365944 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:125370995 original size:20 final size:20
Alignment explanation
Indices: 125370961--125371007 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
125370951 GAACAACGAA
125370961 TAAAA-AATCCAATTTGTGC
1 TAAAATAATCCAATTTGTGC
*
125370980 TAAAATAATTCAATTTGTGC
1 TAAAATAATCCAATTTGTGC
*
125371000 TAATATAA
1 TAAAATAA
125371008 CTTGTTTCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.36
Consensus pattern (20 bp):
TAAAATAATCCAATTTGTGC
Found at i:125372486 original size:23 final size:24
Alignment explanation
Indices: 125372460--125372521 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 24
125372450 TCGATAAGAT
*
125372460 GCACTGAAGTGCCACTAT-TCTTC
1 GCACTGAAGTGCCACTATCACTTC
* * * *
125372483 GCACAGATGTG-CAATATCACTTT
1 GCACTGAAGTGCCACTATCACTTC
*
125372506 ACACTGAAGTGCCACT
1 GCACTGAAGTGCCACT
125372522 CACTTGCATA
Statistics
Matches: 28, Mismatches: 9, Indels: 3
0.70 0.22 0.08
Matches are distributed among these distances:
22 5 0.18
23 20 0.71
24 3 0.11
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (24 bp):
GCACTGAAGTGCCACTATCACTTC
Found at i:125372800 original size:16 final size:15
Alignment explanation
Indices: 125372762--125372800 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
125372752 CTCAAGTGAC
125372762 ATTTATTTCATCACT
1 ATTTATTTCATCACT
*
125372777 ATTAATTTCTATCACT
1 ATTTATTTC-ATCACT
*
125372793 GTTTATTT
1 ATTTATTT
125372801 TACCCATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.26, C:0.15, G:0.03, T:0.56
Consensus pattern (15 bp):
ATTTATTTCATCACT
Found at i:125374996 original size:39 final size:39
Alignment explanation
Indices: 125374937--125375037 Score: 157
Period size: 39 Copynumber: 2.6 Consensus size: 39
125374927 GCTCTGATGA
*
125374937 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
*
125374976 GCTTTAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
* * *
125375015 GCTTCAGCTAGACTTTGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
125375038 AGATCACCAT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.14, C:0.25, G:0.23, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
Found at i:125375019 original size:21 final size:21
Alignment explanation
Indices: 125374955--125375019 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
125374945 TAGCCTTCGG
*
125374955 GCTTCCGTTTAGCACTTATGT
1 GCTTCCATTTAGCACTTATGT
* * * *
125374976 GCTT-TAGTTAGC-CTT-CGG
1 GCTTCCATTTAGCACTTATGT
125374994 GCTTCCATTTAGCACTTATGT
1 GCTTCCATTTAGCACTTATGT
125375015 GCTTC
1 GCTTC
125375020 AGCTAGACTT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
18 5 0.16
19 9 0.28
20 8 0.25
21 10 0.31
ACGTcount: A:0.14, C:0.25, G:0.20, T:0.42
Consensus pattern (21 bp):
GCTTCCATTTAGCACTTATGT
Found at i:125376289 original size:22 final size:22
Alignment explanation
Indices: 125376249--125376290 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
125376239 AGGACCTATT
*
125376249 TGTAAAAATGTTATAAAATGTG
1 TGTAAAAATGTGATAAAATGTG
* *
125376271 TGTAAAAGTGTGATTAAATG
1 TGTAAAAATGTGATAAAATG
125376291 AAAAATGTGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (22 bp):
TGTAAAAATGTGATAAAATGTG
Found at i:125376441 original size:19 final size:19
Alignment explanation
Indices: 125376417--125376454 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
125376407 AGGGCAAAAA
125376417 CATAATTTTACCATAATGT
1 CATAATTTTACCATAATGT
125376436 CATAATTTTACCATAATGT
1 CATAATTTTACCATAATGT
125376455 TATTTTTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (19 bp):
CATAATTTTACCATAATGT
Found at i:125376829 original size:42 final size:42
Alignment explanation
Indices: 125376770--125376889 Score: 152
Period size: 43 Copynumber: 2.8 Consensus size: 42
125376760 AGGGTTATTA
125376770 AGACTACGTGTAAGACCATATCTGGGATATGGCATCAATATG
1 AGACTACGTGTAAGACCATATCTGGGATATGGCATCAATATG
* * * *
125376812 AGACTCCGTGAAAGACCATAGT-TGGGCTATTGGCATCGATATG
1 AGACTACGTGTAAGACCATA-TCTGGGATA-TGGCATCAATATG
* * *
125376855 AGATTACATGTAAGGCCATATCTGGGATATGGCAT
1 AGACTACGTGTAAGACCATATCTGGGATATGGCAT
125376890 TGACATGTTA
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
42 31 0.48
43 34 0.52
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.27
Consensus pattern (42 bp):
AGACTACGTGTAAGACCATATCTGGGATATGGCATCAATATG
Found at i:125378406 original size:2 final size:2
Alignment explanation
Indices: 125378395--125378439 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
125378385 ATTAAGTTAT
125378395 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
125378436 TA TA
1 TA TA
125378440 AAGAAAAAGG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:125378448 original size:6 final size:6
Alignment explanation
Indices: 125378439--125378479 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
125378429 ATATATATAT
* *
125378439 AAAGAA AAAGGA ATA-AA AAAGAA AAAG-A AAAGAA AAAGAA A
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA A
125378480 GAAAGGATGA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
5 8 0.28
6 21 0.72
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:125378461 original size:17 final size:17
Alignment explanation
Indices: 125378439--125378479 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
125378429 ATATATATAT
*
125378439 AAAGAAAAAGGAATA-AA
1 AAAGAAAAA-GAAAAGAA
125378456 AAAGAAAAAGAAAAGAA
1 AAAGAAAAAGAAAAGAA
125378473 AAAGAAA
1 AAAGAAA
125378480 GAAAGGATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.02
Consensus pattern (17 bp):
AAAGAAAAAGAAAAGAA
Found at i:125378469 original size:11 final size:11
Alignment explanation
Indices: 125378455--125378483 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
125378445 AAAGGAATAA
125378455 AAAAGAAAAAG
1 AAAAGAAAAAG
125378466 AAAAGAAAAAG
1 AAAAGAAAAAG
125378477 -AAAGAAA
1 AAAAGAAA
125378484 GGATGAAACG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:125378527 original size:16 final size:16
Alignment explanation
Indices: 125378515--125378545 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
125378505 AGGGGAAAGA
*
125378515 AAGAAGGAAGGAAAAC
1 AAGAAAGAAGGAAAAC
125378531 AAGAAAGAAGGAAAA
1 AAGAAAGAAGGAAAA
125378546 AGGGAAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.03, G:0.29, T:0.00
Consensus pattern (16 bp):
AAGAAAGAAGGAAAAC
Found at i:125379844 original size:16 final size:17
Alignment explanation
Indices: 125379813--125379845 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
125379803 TTCATAAGTA
125379813 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
125379830 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
125379846 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:125380259 original size:46 final size:46
Alignment explanation
Indices: 125380131--125380266 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
125380121 TTTGACATGA
* * * * ** *
125380131 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-CGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*
125380177 TGCCATGGTATCTTTCAACCATGGTCTTGCACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
125380223 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
125380267 AGAGCACACT
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 4 0.05
46 76 0.95
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:125389004 original size:2 final size:2
Alignment explanation
Indices: 125388992--125389053 Score: 115
Period size: 2 Copynumber: 31.0 Consensus size: 2
125388982 TTTCCATCCT
*
125388992 TC TC CC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
125389034 TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC
125389054 AGCATGGTGT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
TC
Found at i:125392773 original size:6 final size:6
Alignment explanation
Indices: 125392764--125392826 Score: 99
Period size: 6 Copynumber: 10.5 Consensus size: 6
125392754 GCTTCGTACC
* * *
125392764 CACTCC CACTCT CACTCT CACTCT CACTCT CGCTCT CGCTCT CACTCT
1 CACTCT CACTCT CACTCT CACTCT CACTCT CACTCT CACTCT CACTCT
125392812 CACTCT CACTCT CAC
1 CACTCT CACTCT CAC
125392827 ATGTGAAACT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 54 1.00
ACGTcount: A:0.14, C:0.52, G:0.03, T:0.30
Consensus pattern (6 bp):
CACTCT
Found at i:125395881 original size:22 final size:21
Alignment explanation
Indices: 125395852--125395897 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
125395842 TTAGTCATAT
125395852 AATAAATTCATTAATATAATA
1 AATAAATTCATTAATATAATA
* * *
125395873 AATATAATTTATTATTTTAATA
1 AATA-AATTCATTAATATAATA
125395895 AAT
1 AAT
125395898 TATTTAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
AATAAATTCATTAATATAATA
Found at i:125395908 original size:20 final size:22
Alignment explanation
Indices: 125395868--125395913 Score: 69
Period size: 20 Copynumber: 2.2 Consensus size: 22
125395858 TTCATTAATA
*
125395868 TAATAAATATAATTTATTATTT
1 TAATAAATATAATTTAATATTT
125395890 TAATAAAT-T-ATTTAATATTT
1 TAATAAATATAATTTAATATTT
125395910 TAAT
1 TAAT
125395914 TTTATTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.61
21 1 0.04
22 8 0.35
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
TAATAAATATAATTTAATATTT
Found at i:125395933 original size:13 final size:14
Alignment explanation
Indices: 125395916--125395963 Score: 62
Period size: 13 Copynumber: 3.4 Consensus size: 14
125395906 ATTTTAATTT
125395916 TATTTTAAAAATAA
1 TATTTTAAAAATAA
125395930 -ATTTTAAAAATAA
1 TATTTTAAAAATAA
*
125395943 TAGTTTTAAATAATAT
1 TA-TTTTAAA-AATAA
125395959 TATTT
1 TATTT
125395964 ACATATTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 13 0.43
14 1 0.03
15 10 0.33
16 6 0.20
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (14 bp):
TATTTTAAAAATAA
Found at i:125396473 original size:16 final size:16
Alignment explanation
Indices: 125396452--125396504 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
125396442 ATCCAAATAC
125396452 TAAAAAATAATATTTT
1 TAAAAAATAATATTTT
*
125396468 TAAAAAAAAAT-TATTT
1 TAAAAAATAATAT-TTT
125396484 TATAAAAAT--TATTTT
1 TA-AAAAATAATATTTT
125396499 TAAAAA
1 TAAAAA
125396505 TTATTTTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
14 4 0.12
15 7 0.22
16 16 0.50
17 5 0.16
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TAAAAAATAATATTTT
Found at i:125396502 original size:13 final size:13
Alignment explanation
Indices: 125396473--125396525 Score: 88
Period size: 14 Copynumber: 3.9 Consensus size: 13
125396463 ATTTTTAAAA
125396473 AAAAATTATTTTAT
1 AAAAATTATTTT-T
125396487 AAAAATTATTTTT
1 AAAAATTATTTTT
125396500 AAAAATTATTTTT
1 AAAAATTATTTTT
125396513 CAAAAATTATTTT
1 -AAAAATTATTTT
125396526 CAATTAAATG
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.37
14 24 0.63
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (13 bp):
AAAAATTATTTTT
Found at i:125396503 original size:27 final size:27
Alignment explanation
Indices: 125396473--125396525 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
125396463 ATTTTTAAAA
125396473 AAAAATTATTTTAT-AAAAATTATTTTT
1 AAAAATTATTTT-TCAAAAATTATTTTT
125396500 AAAAATTATTTTTCAAAAATTATTTT
1 AAAAATTATTTTTCAAAAATTATTTT
125396526 CAATTAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (27 bp):
AAAAATTATTTTTCAAAAATTATTTTT
Found at i:125401798 original size:18 final size:18
Alignment explanation
Indices: 125401775--125401820 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
125401765 TTAAGATAAA
125401775 TTATGACAATTCTTGTTT
1 TTATGACAATTCTTGTTT
125401793 TTATGACAATTCTTGTTT
1 TTATGACAATTCTTGTTT
*
125401811 TTATTACAAT
1 TTATGACAAT
125401821 CTATATATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.26, C:0.11, G:0.09, T:0.54
Consensus pattern (18 bp):
TTATGACAATTCTTGTTT
Found at i:125406205 original size:22 final size:22
Alignment explanation
Indices: 125406166--125406207 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
125406156 ATATACTTAC
*
125406166 ATTTATAAATATTTTTATATAT
1 ATTTATAAATATTATTATATAT
125406188 ATTTATCAAATA-TATTATAT
1 ATTTAT-AAATATTATTATAT
125406208 CAAAATAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTTATAAATATTATTATATAT
Found at i:125408415 original size:19 final size:20
Alignment explanation
Indices: 125408380--125408419 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
125408370 GTGACAAGTG
*
125408380 TGTGGTAATAGTAAAATACA
1 TGTGGTAATAATAAAATACA
125408400 TGTGGTAA-AATAAAATACA
1 TGTGGTAATAATAAAATACA
125408419 T
1 T
125408420 ATATTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.47, C:0.05, G:0.17, T:0.30
Consensus pattern (20 bp):
TGTGGTAATAATAAAATACA
Found at i:125408517 original size:19 final size:19
Alignment explanation
Indices: 125408493--125408529 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
125408483 TTATAATATA
*
125408493 TGGTAACATAAAATACATG
1 TGGTAAAATAAAATACATG
125408512 TGGTAAAATAAAATACAT
1 TGGTAAAATAAAATACAT
125408530 ACATTTCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.08, G:0.14, T:0.27
Consensus pattern (19 bp):
TGGTAAAATAAAATACATG
Found at i:125416226 original size:264 final size:264
Alignment explanation
Indices: 125415756--125416290 Score: 905
Period size: 264 Copynumber: 2.0 Consensus size: 264
125415746 GGCCCAGATT
* * * *
125415756 GAGTTTATTTGTATACTGTTTGTTTGTTTGTACGGGGATTTACACACTGAGTTTACATAAACTCA
1 GAGTTTATTTGTATACTGTTTGTTTGTTTGCACAGGGACTTACACACTAAGTTTACATAAACTCA
* *
125415821 CCCCTTTTGCTTAATCTGTGCAGGTAATCCCCAGACTTGATGAATCGGTGCAGCGAAGGACTTGG
66 CCCCTTTTGCTTAATCTATGCAGGTAATCCCCAGACTTGACGAATCGGTGCAGCGAAGGACTTGG
125415886 CGTAGGCCATACAAACCTAAACTTTTACTTCAACTTTGGGTATTTAATTTTTAAGTATACTCTGG
131 CGTAGGCCATACAAACCTAAACTTTTACTTCAACTTTGGGTATTTAATTTTTAAGTATACTCTGG
*
125415951 GTTACTTTTTATGTAAATTACGGACTTTCTGGGACTTTTAATTAATTTGGGTTATTATTTATTTT
196 GTTACTTTTTATGTAAATTACGGACTTTCTGGGACTTTTAATTAATTTGGGTTATTATTTACTTT
125416016 TATG
261 TATG
125416020 GAGTTTATTTGTATACTGTTTGTTTGTTTGCACAGGGACTTACACACTAAGTTTACATAAACTCA
1 GAGTTTATTTGTATACTGTTTGTTTGTTTGCACAGGGACTTACACACTAAGTTTACATAAACTCA
125416085 CCCCTTTTGCTTAATCTATGCAGGTAATCCCCAGACTTGACGAATCGGTGCAGCGGAA-GACTTG
66 CCCCTTTTGCTTAATCTATGCAGGTAATCCCCAGACTTGACGAATCGGTGCAGC-GAAGGACTTG
* * * *
125416149 GCAGT-GGCTATACAAACCTAAACTTTTACTTTAACTTTGGGTATTTAATTTTTAATTATACTTT
130 GC-GTAGGCCATACAAACCTAAACTTTTACTTCAACTTTGGGTATTTAATTTTTAAGTATACTCT
* * *
125416213 GGGTTACTTTTTATGTATATTGCGGACTTTCTGGGACTTTTACTTAATTTGGGTTATTATTTACT
194 GGGTTACTTTTTATGTAAATTACGGACTTTCTGGGACTTTTAATTAATTTGGGTTATTATTTACT
125416278 TTTATG
259 TTTATG
125416284 GA-TTTAT
1 GAGTTTAT
125416291 AACTTCTAAG
Statistics
Matches: 255, Mismatches: 14, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
263 5 0.02
264 245 0.96
265 5 0.02
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (264 bp):
GAGTTTATTTGTATACTGTTTGTTTGTTTGCACAGGGACTTACACACTAAGTTTACATAAACTCA
CCCCTTTTGCTTAATCTATGCAGGTAATCCCCAGACTTGACGAATCGGTGCAGCGAAGGACTTGG
CGTAGGCCATACAAACCTAAACTTTTACTTCAACTTTGGGTATTTAATTTTTAAGTATACTCTGG
GTTACTTTTTATGTAAATTACGGACTTTCTGGGACTTTTAATTAATTTGGGTTATTATTTACTTT
TATG
Found at i:125418256 original size:33 final size:32
Alignment explanation
Indices: 125418207--125418321 Score: 122
Period size: 33 Copynumber: 3.5 Consensus size: 32
125418197 ATGGACTTTT
* * * * *
125418207 CCTTTTCTAATTGTACACTCGAGGAGCACATTC
1 CCTTTTC-AAGTGTACACACGAAGTGCACATAC
*
125418240 CCTTTTCAAGTGGTACACACGAAGTGTACATAC
1 CCTTTTCAAGT-GTACACACGAAGTGCACATAC
* * *
125418273 CCTTTTCAATTTGTACACACAAAGTGCACATAA
1 CCTTTTCAA-GTGTACACACGAAGTGCACATAC
125418306 CCTTTTCAAGTGTACA
1 CCTTTTCAAGTGTACA
125418322 TACATAGTAT
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
32 9 0.13
33 59 0.86
34 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (32 bp):
CCTTTTCAAGTGTACACACGAAGTGCACATAC
Found at i:125418372 original size:33 final size:33
Alignment explanation
Indices: 125418240--125418400 Score: 155
Period size: 33 Copynumber: 4.9 Consensus size: 33
125418230 GAGCACATTC
* * *
125418240 CCTTTTCAAGTGGTACACACGAAGTGTACATAC
1 CCTTTTCAAGTGGTACACACAAAGTATACATAT
* * ** *
125418273 CCTTTTCAATTTGTACACACAAAGTGCACATAA
1 CCTTTTCAAGTGGTACACACAAAGTATACATAT
* * * *
125418306 CCTTTTCAAGT-GTACATACATAGTATACTTTT
1 CCTTTTCAAGTGGTACACACAAAGTATACATAT
* * *
125418338 CCTTTTCAAGTGGTATACACAAAGTATACCTTT
1 CCTTTTCAAGTGGTACACACAAAGTATACATAT
*
125418371 CCTTTTCATA-TGGTATACACAAAGTATACA
1 CCTTTTCA-AGTGGTACACACAAAGTATACA
125418401 CAAAGTATAC
Statistics
Matches: 108, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
32 25 0.23
33 82 0.76
34 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (33 bp):
CCTTTTCAAGTGGTACACACAAAGTATACATAT
Found at i:125418399 original size:11 final size:11
Alignment explanation
Indices: 125418383--125418410 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
125418373 TTTTCATATG
125418383 GTATACACAAA
1 GTATACACAAA
125418394 GTATACACAAA
1 GTATACACAAA
125418405 GTATAC
1 GTATAC
125418411 CTTTCCTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.50, C:0.18, G:0.11, T:0.21
Consensus pattern (11 bp):
GTATACACAAA
Found at i:125418489 original size:33 final size:32
Alignment explanation
Indices: 125418439--125418519 Score: 96
Period size: 33 Copynumber: 2.5 Consensus size: 32
125418429 CACACAAAGC
125418439 GTACATAACCTTTTCAAGTTAT-ACCA-TTTGG
1 GTACATAACCTTTTCAAG-TATCACCATTTTGG
125418470 GTACATAAATCCTTTTCAAGTATCACCATTTTGG
1 GTACAT-AA-CCTTTTCAAGTATCACCATTTTGG
*
125418504 GTTACAT-TCCTTTTCA
1 G-TACATAACCTTTTCA
125418520 TAATGAGATC
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
31 6 0.14
32 13 0.30
33 14 0.32
34 6 0.14
35 5 0.11
ACGTcount: A:0.27, C:0.21, G:0.11, T:0.41
Consensus pattern (32 bp):
GTACATAACCTTTTCAAGTATCACCATTTTGG
Found at i:125440474 original size:14 final size:14
Alignment explanation
Indices: 125440436--125440478 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
125440426 CAAAATGTAC
125440436 AATATAATTAAA-T
1 AATATAATTAAATT
125440449 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
125440464 AA-ATAATTTAATT
1 AATATAATTAAATT
125440477 AA
1 AA
125440479 CTGTTTACCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:125441000 original size:40 final size:41
Alignment explanation
Indices: 125440947--125441049 Score: 113
Period size: 41 Copynumber: 2.6 Consensus size: 41
125440937 GATAAAAAAC
* * *
125440947 GCAGC-AAAGGTAAAGCATTAGCGGCGTTTTT-GCATAAAT
1 GCAGCAAAAAGTAAAGCAATAGCGACGTTTTTCGCATAAAT
* *
125440986 GCAGCAAAAAGTAAAGCAATAACGACGTTTTTCTCATAAAT
1 GCAGCAAAAAGTAAAGCAATAGCGACGTTTTTCGCATAAAT
* *
125441027 GTC-GTAAAACGTAAAGCAATAGC
1 G-CAGCAAAAAGTAAAGCAATAGC
125441050 CATAAATATT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
39 5 0.09
40 22 0.42
41 25 0.47
42 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (41 bp):
GCAGCAAAAAGTAAAGCAATAGCGACGTTTTTCGCATAAAT
Found at i:125444034 original size:43 final size:43
Alignment explanation
Indices: 125443956--125444071 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 43
125443946 CAATGCCGAC
** * * *
125443956 GTCCCAGACGTGGTCTTACATGTAAT-TCGATATCGAAGCCTCT
1 GTCCCAGACAAGGTCTTACACGAAATCTC-AAATCGAAGCCTCT
* *
125443999 GTCCCAGACAAGGTCTTACACGAAATCTCAAATCGAGGCCTGT
1 GTCCCAGACAAGGTCTTACACGAAATCTCAAATCGAAGCCTCT
* *
125444042 GTCCCAAACACA-GTCTTACACGATATCTCA
1 GTCCCAGACA-AGGTCTTACACGAAATCTCA
125444072 GATCAATTTC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
43 59 0.95
44 3 0.05
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (43 bp):
GTCCCAGACAAGGTCTTACACGAAATCTCAAATCGAAGCCTCT
Found at i:125449545 original size:23 final size:24
Alignment explanation
Indices: 125449518--125449564 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
125449508 GCAAAACAGA
125449518 GTAA-GGTTTCGTGGAAATGGGGG
1 GTAAGGGTTTCGTGGAAATGGGGG
*
125449541 GTAAGGGTTTCGTGGGAATGGGGG
1 GTAAGGGTTTCGTGGAAATGGGGG
125449565 TTTGAATAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.19, C:0.04, G:0.51, T:0.26
Consensus pattern (24 bp):
GTAAGGGTTTCGTGGAAATGGGGG
Found at i:125449951 original size:9 final size:9
Alignment explanation
Indices: 125449926--125449964 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
125449916 TTCGAAAAAA
125449926 AATTCGAGTT
1 AATTCGA-TT
*
125449936 GATTCGATT
1 AATTCGATT
125449945 AATTCGATT
1 AATTCGATT
*
125449954 AACTCGATT
1 AATTCGATT
125449963 AA
1 AA
125449965 CTCAATTTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
9 20 0.77
10 6 0.23
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.38
Consensus pattern (9 bp):
AATTCGATT
Found at i:125455095 original size:18 final size:18
Alignment explanation
Indices: 125455072--125455107 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
125455062 TGTGATATTT
125455072 TATTTAATTAG-TAAAATA
1 TATTT-ATTAGATAAAATA
125455090 TATTTATTAGATAAAATA
1 TATTTATTAGATAAAATA
125455108 ATTAAATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (18 bp):
TATTTATTAGATAAAATA
Found at i:125455723 original size:20 final size:20
Alignment explanation
Indices: 125455698--125455740 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
125455688 ATAAAATAAT
* *
125455698 AAACAAAGTAAAATAAAAAG
1 AAACAAAGCAAAAGAAAAAG
*
125455718 AAACAAAGCAAAAGAAACAG
1 AAACAAAGCAAAAGAAAAAG
125455738 AAA
1 AAA
125455741 AGAAAACAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.74, C:0.09, G:0.12, T:0.05
Consensus pattern (20 bp):
AAACAAAGCAAAAGAAAAAG
Found at i:125456190 original size:17 final size:18
Alignment explanation
Indices: 125456168--125456203 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
125456158 TAAATGAGTT
125456168 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
125456185 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
125456203 A
1 A
125456204 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:125456862 original size:41 final size:37
Alignment explanation
Indices: 125456814--125456913 Score: 92
Period size: 41 Copynumber: 2.6 Consensus size: 37
125456804 TTGACCTCGA
*
125456814 GTCGATGAGACACTGGGTGTCACTGTTTTACTTTGGATAG
1 GTCGATGAGACACTGGGTGTCAC---TTTACTTCGGATAG
* ** ** *
125456854 ATTCGATGAGGTACTGGGTACCACTTTACTTCGGCTAG
1 -GTCGATGAGACACTGGGTGTCACTTTACTTCGGATAG
*
125456892 GCCGATGAGACACTGGGTGTCA
1 GTCGATGAGACACTGGGTGTCA
125456914 ATGTAACACC
Statistics
Matches: 46, Mismatches: 13, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
37 16 0.35
38 12 0.26
41 18 0.39
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (37 bp):
GTCGATGAGACACTGGGTGTCACTTTACTTCGGATAG
Found at i:125457943 original size:18 final size:18
Alignment explanation
Indices: 125457906--125457944 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
125457896 TTAGCAAAAT
*
125457906 TGGGCTCACACACCTATG
1 TGGGCTCACACACCCATG
*
125457924 TGGGCTCACACACCCGTG
1 TGGGCTCACACACCCATG
125457942 TGG
1 TGG
125457945 TCACACGGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.18, C:0.33, G:0.28, T:0.21
Consensus pattern (18 bp):
TGGGCTCACACACCCATG
Found at i:125463403 original size:47 final size:47
Alignment explanation
Indices: 125463260--125463566 Score: 220
Period size: 47 Copynumber: 6.5 Consensus size: 47
125463250 GACGAGGGCT
* * *
125463260 AGTGTAAGACGTGTCTGGGACATACATCGG--TCGCATCATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCG-ATGATGATAGCC
* * * * * *
125463306 CGTGTAAGACCACGTCTGGGATATGGCATCGGCGTAGA-GGTGAGTA-CC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGA-TAGCC
*
125463354 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCC
* * * ** * *
125463401 AGTGCAAGACGTGTCTAGGACATGCATCGGCCAAG-T-TTCG-T-GCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGAT-GATAGCC
* * * * * * *
125463445 AGTGTAAGACATGTTTGGGACATGCATCAG-CACGTATACACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCG-AT-GATGATAGCC
125463493 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGGA-GATAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAT-GATGATAGCC
*
125463542 AGCGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
125463567 GAAGCGGCAA
Statistics
Matches: 205, Mismatches: 39, Indels: 32
0.74 0.14 0.12
Matches are distributed among these distances:
43 3 0.01
44 27 0.13
45 3 0.01
46 24 0.12
47 58 0.28
48 32 0.16
49 44 0.21
50 11 0.05
51 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCC
Found at i:125463516 original size:49 final size:48
Alignment explanation
Indices: 125463442--125463566 Score: 137
Period size: 49 Copynumber: 2.6 Consensus size: 48
125463432 CAAGTTTCGT
*
125463442 GCTAGTGTAAGA-CATGTTTGGGACATGCATCAG-CACGTATACACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCAGCCACG-ATACA-GAGA
* * ** *
125463490 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGGAGATA
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCAGCCACGATACAGAGA
* *
125463539 GCCAGCGTAAGACCATGTCTGGGACATG
1 GCTAGTGTAAGACCATGTCTGGGACATG
125463567 GAAGCGGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
48 13 0.20
49 41 0.62
50 9 0.14
51 3 0.05
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCAGCCACGATACAGAGA
Found at i:125465128 original size:22 final size:22
Alignment explanation
Indices: 125465103--125465146 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
125465093 ATTTCTAAAT
125465103 TAATAATTAAAATAATG-AATTA
1 TAATAATT-AAATAATGCAATTA
125465125 TAATAATTAAATAATGCAATTA
1 TAATAATTAAATAATGCAATTA
125465147 AGGTAGTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (22 bp):
TAATAATTAAATAATGCAATTA
Found at i:125468098 original size:48 final size:48
Alignment explanation
Indices: 125468032--125468504 Score: 748
Period size: 48 Copynumber: 10.0 Consensus size: 48
125468022 TACAAGACAA
* * *
125468032 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
125468080 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
125468128 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATG-G
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
125468175 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
125468223 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
125468271 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
125468319 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATG-ATG-G
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
125468365 ATA--TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
125468411 ATATATATATGTGGTAAAGCCGAATGGCT-ATGTGAAATATATAT-AG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
125468457 ATATGTATAT-TGGTAAAGCC-AATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
125468503 AT
1 AT
125468505 GTGTCTATAT
Statistics
Matches: 401, Mismatches: 17, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
44 42 0.10
45 26 0.06
46 23 0.06
47 62 0.15
48 248 0.62
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:125468202 original size:143 final size:142
Alignment explanation
Indices: 125468032--125468504 Score: 751
Period size: 143 Copynumber: 3.4 Consensus size: 142
125468022 TACAAGACAA
* *
125468032 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT-TATATGTGGTAA
*
125468097 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATAT
65 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
125468162 GAAATATGTATGG
130 GAAATATGTATGG
*
125468175 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATATATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT-TATATGTGGTAA
*
125468240 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
65 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
125468305 GAAATATGTATGAG
130 GAAATATGTATG-G
* *
125468319 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATG-ATG-GATA-TATATGTGGTAAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATTATATGTGGTAAA
* * *
125468381 GCCGAATGGCTAATGTGAAATATATATGAGATATATATATGTGGTAAAGCCGAATGGCT-ATGTG
66 GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
125468445 AAATATATATAG
131 AAATATGTATGG
* *
125468457 ATATGTATAT-TGGTAAAGCC-AATGGCTAATGTGAAATATGTAGGAGAT
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
125468505 GTGTCTATAT
Statistics
Matches: 310, Mismatches: 17, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
136 19 0.06
137 12 0.04
138 14 0.05
139 13 0.04
140 69 0.22
142 4 0.01
143 139 0.45
144 40 0.13
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (142 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATTATATGTGGTAAA
GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
AAATATGTATGG
Found at i:125468356 original size:191 final size:188
Alignment explanation
Indices: 125468032--125468504 Score: 855
Period size: 191 Copynumber: 2.5 Consensus size: 188
125468022 TACAAGACAA
*
125468032 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
125468097 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATAT
66 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATAT
125468162 GAAATATGTATGGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
131 GAAATATG-ATGG--ATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
125468223 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
125468288 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATAT
66 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATAT
125468353 GAAATATGATGGATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
131 GAAATATGATGGATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
125468411 ATATATATATGTGGTAAAGCCGAATGGCTA-TGTGAAATATATAT-AGATATGTATAT-TGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
* *
125468473 AGCC-AATGGCTAATGTGAAATATGTAGGAGAT
66 AGCCGAATGGCTAGTGTGAAATATGTATGAGAT
125468505 GTGTCTATAT
Statistics
Matches: 278, Mismatches: 4, Indels: 7
0.96 0.01 0.02
Matches are distributed among these distances:
184 26 0.09
185 10 0.04
186 12 0.04
187 13 0.05
188 76 0.27
190 4 0.01
191 137 0.49
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (188 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATAT
GAAATATGATGGATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:125470041 original size:40 final size:40
Alignment explanation
Indices: 125469985--125470270 Score: 439
Period size: 40 Copynumber: 7.2 Consensus size: 40
125469975 GAGAATTGAG
*
125469985 AGTGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
125470025 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
125470065 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
125470105 AGTGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
125470145 AGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
125470185 AGAGTTATA-CCAGGGTTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCC-GGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
125470225 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCCTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
125470265 GGTGAT
1 AGTGAT
125470271 GTGTATTCGG
Statistics
Matches: 228, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 2 0.01
40 224 0.98
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:125470482 original size:25 final size:25
Alignment explanation
Indices: 125470432--125470482 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
125470422 TGTGTAACAA
* *
125470432 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
125470457 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
125470482 C
1 C
125470483 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:125473819 original size:48 final size:48
Alignment explanation
Indices: 125473748--125474229 Score: 775
Period size: 48 Copynumber: 10.0 Consensus size: 48
125473738 CAAGACAAAT
* *
125473748 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
125473796 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGGG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
125473844 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
125473892 ATATATATATGTGGTAAAGCCGAATGGCTACTGTGAAATATATATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
125473940 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
125473988 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGGG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
125474036 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGGG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
125474084 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
125474132 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
125474180 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
125474228 AT
1 AT
125474230 GTGTCTATAT
Statistics
Matches: 412, Mismatches: 22, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 412 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:125479328 original size:68 final size:68
Alignment explanation
Indices: 125479202--125479344 Score: 164
Period size: 68 Copynumber: 2.1 Consensus size: 68
125479192 GCCCCATTAA
* * * ** * *
125479202 GGTCTTACACAGTATGACCTCATGTTTAATGTCTTGGTATACCCCTTTTGTTGCCATAGCCGAGC
1 GGTCTTACACAGTAGGACCTCATGTTTAACGTCCTGACAGACCCCTTTTATTGCCATAGCCGAGC
125479267 TAT
66 TAT
* *
125479270 GGTCTTACACAGTAGGAACC-CATGTTTAACGTCCTGACAGACTCCC-TTTATTGTCATAGTCGA
1 GGTCTTACACAGTAGG-ACCTCATGTTTAACGTCCTGACAGAC-CCCTTTTATTGCCATAGCCGA
*
125479333 GTTAT
64 GCTAT
125479338 GGTCTTA
1 GGTCTTA
125479345 TACAATATAA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
68 57 0.90
69 6 0.10
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (68 bp):
GGTCTTACACAGTAGGACCTCATGTTTAACGTCCTGACAGACCCCTTTTATTGCCATAGCCGAGC
TAT
Found at i:125484577 original size:2 final size:2
Alignment explanation
Indices: 125484572--125484605 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
125484562 GTGTCGTGTG
125484572 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
125484606 AAAGTTGATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:125487269 original size:9 final size:9
Alignment explanation
Indices: 125487252--125487286 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
125487242 AGTGGACAAA
*
125487252 ATTATAAAT
1 ATTAAAAAT
125487261 ATTAAAAAT
1 ATTAAAAAT
125487270 ATTAAAATAT
1 ATTAAAA-AT
125487280 ATTAAAA
1 ATTAAAA
125487287 TTGATTGGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 15 0.62
10 9 0.38
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
ATTAAAAAT
Found at i:125487283 original size:10 final size:10
Alignment explanation
Indices: 125487259--125487287 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
125487249 AAAATTATAA
125487259 ATATTAAAA-
1 ATATTAAAAT
125487268 ATATTAAAAT
1 ATATTAAAAT
125487278 ATATTAAAAT
1 ATATTAAAAT
125487288 TGATTGGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
ATATTAAAAT
Found at i:125490298 original size:60 final size:60
Alignment explanation
Indices: 125490226--125490345 Score: 240
Period size: 60 Copynumber: 2.0 Consensus size: 60
125490216 CAAAAGAATG
125490226 TGAAATGAGAATATTAGTAATAGATTATTCATTTGTTTCTTGTTCTTAATTAAATTTTAT
1 TGAAATGAGAATATTAGTAATAGATTATTCATTTGTTTCTTGTTCTTAATTAAATTTTAT
125490286 TGAAATGAGAATATTAGTAATAGATTATTCATTTGTTTCTTGTTCTTAATTAAATTTTAT
1 TGAAATGAGAATATTAGTAATAGATTATTCATTTGTTTCTTGTTCTTAATTAAATTTTAT
125490346 AATAGATAGG
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.50
Consensus pattern (60 bp):
TGAAATGAGAATATTAGTAATAGATTATTCATTTGTTTCTTGTTCTTAATTAAATTTTAT
Found at i:125492561 original size:18 final size:18
Alignment explanation
Indices: 125492540--125492574 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
125492530 AAATAATAGG
*
125492540 AAAATTATA-AATATTAT
1 AAAAATATAGAATATTAT
125492557 AAAAATATAGAATATTAT
1 AAAAATATAGAATATTAT
125492575 TAATATGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (18 bp):
AAAAATATAGAATATTAT
Found at i:125492630 original size:21 final size:19
Alignment explanation
Indices: 125492605--125492661 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 19
125492595 AATAATATAT
125492605 AAATTTAGAAATTATAGAAA
1 AAATTTAGAAATTATA-AAA
* *
125492625 ACAATTTA-AAAATGTAAAA
1 A-AATTTAGAAATTATAAAA
125492644 AAATTATAGAAATATATA
1 AAATT-TAGAAAT-TATA
125492662 TAAATTTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
18 4 0.14
19 6 0.21
20 10 0.34
21 9 0.31
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (19 bp):
AAATTTAGAAATTATAAAA
Found at i:125492661 original size:10 final size:9
Alignment explanation
Indices: 125492526--125492734 Score: 59
Period size: 9 Copynumber: 21.6 Consensus size: 9
125492516 TTTGGAAAAA
*
125492526 ATAAAAATA
1 ATAAAAATT
125492535 ATAGGAAAATT
1 ATA--AAAATT
*
125492546 ATAAATATT
1 ATAAAAATT
125492555 ATAAAAA-T
1 ATAAAAATT
*
125492563 ATAGAATATT
1 ATA-AAAATT
**
125492573 ATTAATATGTT
1 A-TAA-AAATT
125492584 ATGAAAAA-T
1 AT-AAAAATT
*
125492593 ATAATAA-T
1 ATAAAAATT
*
125492601 ATATAAATT
1 ATAAAAATT
*
125492610 -TAGAAATT
1 ATAAAAATT
125492618 ATAGAAAACAATT
1 AT---AAA-AATT
125492631 -TAAAAATGT
1 ATAAAAAT-T
*
125492640 AAAAAAATT
1 ATAAAAATT
*
125492649 ATAGAAATAT
1 ATAAAAAT-T
*
125492659 ATATAAATTT
1 ATA-AAAATT
125492669 ATAAAAATTCTT
1 ATAAAAA---TT
*
125492681 ATGAAAAGTT
1 AT-AAAAATT
125492691 ATAAAAACTT
1 ATAAAAA-TT
* *
125492701 ATTAAAAGT
1 ATAAAAATT
*
125492710 ACTTAAAAGTT
1 A--TAAAAATT
*
125492721 ATATAAATT
1 ATAAAAATT
125492730 ATAAA
1 ATAAA
125492735 TATATATATA
Statistics
Matches: 148, Mismatches: 28, Indels: 48
0.66 0.12 0.21
Matches are distributed among these distances:
8 24 0.16
9 52 0.35
10 31 0.21
11 26 0.18
12 7 0.05
13 8 0.05
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.34
Consensus pattern (9 bp):
ATAAAAATT
Found at i:125492676 original size:29 final size:27
Alignment explanation
Indices: 125492526--125492695 Score: 89
Period size: 29 Copynumber: 5.9 Consensus size: 27
125492516 TTTGGAAAAA
*
125492526 ATAAAAATAATAGGAAAATTATAAATATT
1 ATAAAAATTATA-GAAAATTATAAAT-TT
*
125492555 ATAAAAA-TATAGAATATTATTAATATGTT
1 ATAAAAATTATAGAAAATTA-TAA-AT-TT
*
125492584 ATGAAAAA-TATA-ATAATATATAAA-TT
1 AT-AAAAATTATAGAAAAT-TATAAATTT
* * *
125492610 -TAGAAATTATAGAAAACAATTTAAAAATGT
1 ATAAAAATTATAG--AA-AA-TTATAAATTT
*
125492640 AAAAAAATTATAGAAATATATATAAATTT
1 ATAAAAATTATAGAAA-AT-TATAAATTT
*
125492669 ATAAAAATTCTTATGAAAAGTTATAAA
1 ATAAAAATT-ATA-GAAAA-TTATAAA
125492696 AACTTATTAA
Statistics
Matches: 109, Mismatches: 15, Indels: 33
0.69 0.10 0.21
Matches are distributed among these distances:
24 4 0.04
25 5 0.05
26 2 0.02
27 7 0.06
28 10 0.09
29 44 0.40
30 22 0.20
31 15 0.14
ACGTcount: A:0.58, C:0.01, G:0.06, T:0.34
Consensus pattern (27 bp):
ATAAAAATTATAGAAAATTATAAATTT
Found at i:125492707 original size:20 final size:21
Alignment explanation
Indices: 125492667--125492709 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
125492657 ATATATAAAT
125492667 TTATAAAAATTCTTATGAAAAG
1 TTATAAAAA-TCTTATGAAAAG
*
125492689 TTATAAAAA-CTTATTAAAAG
1 TTATAAAAATCTTATGAAAAG
125492709 T
1 T
125492710 ACTTAAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 11 0.55
22 9 0.45
ACGTcount: A:0.51, C:0.05, G:0.07, T:0.37
Consensus pattern (21 bp):
TTATAAAAATCTTATGAAAAG
Found at i:125493031 original size:11 final size:10
Alignment explanation
Indices: 125493001--125493055 Score: 60
Period size: 10 Copynumber: 5.6 Consensus size: 10
125492991 TATTAATTTT
125493001 TTAAAAATTA
1 TTAAAAATTA
125493011 TTAAAAATTA
1 TTAAAAATTA
125493021 TTAAAATATTA
1 TTAAAA-ATTA
*
125493032 -TAAAAGTTA
1 TTAAAAATTA
* *
125493041 -TATAAGTTA
1 TTAAAAATTA
125493050 TTAAAA
1 TTAAAA
125493056 TGATTATTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
9 11 0.28
10 25 0.62
11 4 0.10
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:125493202 original size:30 final size:31
Alignment explanation
Indices: 125493145--125493204 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 31
125493135 TAAGCACTAT
125493145 TAAAATAATTTAAAAAATCAATCAAACCATAG
1 TAAAATAATTT-AAAAATCAATCAAACCATAG
* *
125493177 TAAAATAATTT-AAAATGAATTAAACCAT
1 TAAAATAATTTAAAAATCAATCAAACCAT
125493205 TGTACTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 15 0.58
32 11 0.42
ACGTcount: A:0.58, C:0.10, G:0.03, T:0.28
Consensus pattern (31 bp):
TAAAATAATTTAAAAATCAATCAAACCATAG
Found at i:125494787 original size:17 final size:17
Alignment explanation
Indices: 125494765--125494797 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
125494755 TAATATATAA
125494765 ATTTTAATTAAATTATG
1 ATTTTAATTAAATTATG
*
125494782 ATTTTAATTCAATTAT
1 ATTTTAATTAAATTAT
125494798 ACGTGTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (17 bp):
ATTTTAATTAAATTATG
Found at i:125499089 original size:16 final size:18
Alignment explanation
Indices: 125499062--125499094 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
125499052 TGCGTTGATA
125499062 TCTTTATTATTT-TATTG
1 TCTTTATTATTTATATTG
125499079 TCTTT-TTATTTATATT
1 TCTTTATTATTTATATT
125499095 AATAACTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.18, C:0.06, G:0.03, T:0.73
Consensus pattern (18 bp):
TCTTTATTATTTATATTG
Found at i:125500037 original size:28 final size:28
Alignment explanation
Indices: 125500006--125500062 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
125499996 TTCACCAAGT
*
125500006 AAGAAAACATAGTCTTTTATTGAATACG
1 AAGAAAACATAGTCTTTTATTAAATACG
125500034 AAGAAAACATAGTCTTTTATTAAATACG
1 AAGAAAACATAGTCTTTTATTAAATACG
125500062 A
1 A
125500063 CTTATTTCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.32
Consensus pattern (28 bp):
AAGAAAACATAGTCTTTTATTAAATACG
Found at i:125500892 original size:22 final size:22
Alignment explanation
Indices: 125500867--125500908 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
125500857 ATATAGGAAA
125500867 TTAAAAGAT-AAAATGTTTTTTT
1 TTAAAAGATCAAAA-GTTTTTTT
*
125500889 TTAAAGGATCAAAAGTTTTT
1 TTAAAAGATCAAAAGTTTTT
125500909 CGTATAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.45
Consensus pattern (22 bp):
TTAAAAGATCAAAAGTTTTTTT
Found at i:125504720 original size:23 final size:23
Alignment explanation
Indices: 125504685--125504731 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
125504675 CTTTTAAAAA
* *
125504685 TTTTAAAATTTATATTTGCTTTT
1 TTTTAAAACTTATATTTACTTTT
*
125504708 TTTTATAACTTATATTTACTTTT
1 TTTTAAAACTTATATTTACTTTT
125504731 T
1 T
125504732 CTCATAAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.66
Consensus pattern (23 bp):
TTTTAAAACTTATATTTACTTTT
Found at i:125504738 original size:23 final size:23
Alignment explanation
Indices: 125504694--125504738 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
125504684 ATTTTAAAAT
* * *
125504694 TTATATTTGCTTTTTTTTATAAC
1 TTATATTTACTTTTTCTCATAAC
125504717 TTATATTTACTTTTTCTCATAA
1 TTATATTTACTTTTTCTCATAA
125504739 ACAATGCTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.24, C:0.11, G:0.02, T:0.62
Consensus pattern (23 bp):
TTATATTTACTTTTTCTCATAAC
Found at i:125508908 original size:26 final size:26
Alignment explanation
Indices: 125508872--125508994 Score: 101
Period size: 26 Copynumber: 4.8 Consensus size: 26
125508862 GCAGCTATTA
*
125508872 TGAGCGTCCCG-TTATATGGCTCTTCG
1 TGAGCTTCCCGATTA-ATGGCTCTTCG
* * *
125508898 TGAGCTTCCCGATTAAAGACTATTCG
1 TGAGCTTCCCGATTAATGGCTCTTCG
* * * *
125508924 TGAGCTTCTCGATTAAAGGCTTTTTG
1 TGAGCTTCCCGATTAATGGCTCTTCG
** *
125508950 TGAGCTTCTTGATTAATGGCTC-TCC
1 TGAGCTTCCCGATTAATGGCTCTTCG
*
125508975 AGAGCTTCCCGA-T-ATGGCTC
1 TGAGCTTCCCGATTAATGGCTC
125508995 GCTTGAACTT
Statistics
Matches: 80, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
23 7 0.09
24 1 0.01
25 10 0.12
26 59 0.74
27 3 0.04
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
TGAGCTTCCCGATTAATGGCTCTTCG
Found at i:125509030 original size:25 final size:23
Alignment explanation
Indices: 125508976--125509030 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 23
125508966 TGGCTCTCCA
* *
125508976 GAGCTTCCCGATATGGCTCGCTT
1 GAGCTTCCCGATATGGCTAGCTG
* *
125508999 GAACTTCCCGATACATGGCTATCTG
1 GAGCTTCCCGAT--ATGGCTAGCTG
125509024 GAGCTTC
1 GAGCTTC
125509031 ATGTTTAATG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
23 11 0.44
25 14 0.56
ACGTcount: A:0.18, C:0.29, G:0.24, T:0.29
Consensus pattern (23 bp):
GAGCTTCCCGATATGGCTAGCTG
Done.