Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 403 of 438
Found at i:125517624 original size:93 final size:93
Alignment explanation
Indices: 125517496--125517667 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
125517486 GCCCATAAGT
* * * *
125517496 GAACTTGGACTCAACTCAAAGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
125517561 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
125517589 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
125517654 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
125517668 CAAATATCCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:125517663 original size:46 final size:46
Alignment explanation
Indices: 125517488--125517663 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
125517478 TGTAACCCGC
* * * *
125517488 CCATAAGTGAACTTGGACTCAACTCAAAGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
125517534 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
125517584 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
125517627 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
125517664 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:125517682 original size:46 final size:45
Alignment explanation
Indices: 125517539--125517669 Score: 131
Period size: 47 Copynumber: 2.8 Consensus size: 45
125517529 CGCATCCATA
* *
125517539 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-C
* * * * *
125517587 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCC
*
125517632 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCCA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA
125517670 AATATCCCAG
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
44 5 0.07
45 1 0.01
46 27 0.39
47 31 0.45
48 1 0.01
49 4 0.06
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCC
Found at i:125521179 original size:56 final size:56
Alignment explanation
Indices: 125521093--125521206 Score: 210
Period size: 56 Copynumber: 2.0 Consensus size: 56
125521083 TTTTTACTTT
*
125521093 TGGTGGATAGAATTCCCTTAACTGTTCTCATAAATTGAGAATTCATTTGTGTTTGA
1 TGGTGGATAGAATTCCCTTAACTGTTCTCATAAATTGAGAATTCACTTGTGTTTGA
*
125521149 TGGTGGATAGAATTCCCTTAACTTTTCTCATAAATTGAGAATTCACTTGTGTTTGA
1 TGGTGGATAGAATTCCCTTAACTGTTCTCATAAATTGAGAATTCACTTGTGTTTGA
125521205 TG
1 TG
125521207 ATATGAAATT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.41
Consensus pattern (56 bp):
TGGTGGATAGAATTCCCTTAACTGTTCTCATAAATTGAGAATTCACTTGTGTTTGA
Found at i:125530078 original size:5 final size:5
Alignment explanation
Indices: 125530061--125530116 Score: 103
Period size: 5 Copynumber: 11.2 Consensus size: 5
125530051 CATTGCTCTC
*
125530061 TCTAG TCTGG TCTAG TCTAG TCTAG TCTAG TCTAG TCTAG TCTAG TCTAG
1 TCTAG TCTAG TCTAG TCTAG TCTAG TCTAG TCTAG TCTAG TCTAG TCTAG
125530111 TCTAG T
1 TCTAG T
125530117 GTGGGTCTGG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 49 1.00
ACGTcount: A:0.18, C:0.20, G:0.21, T:0.41
Consensus pattern (5 bp):
TCTAG
Found at i:125536450 original size:18 final size:18
Alignment explanation
Indices: 125536422--125536464 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
125536412 GCAAGACTAC
125536422 CAATCCTCTCTCTCTCTCT
1 CAAT-CTCTCTCTCTCTCT
* * *
125536441 CAATCTCTCTGTGTCTTT
1 CAATCTCTCTCTCTCTCT
125536459 CAATCT
1 CAATCT
125536465 AAGAAGTGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.14, C:0.37, G:0.05, T:0.44
Consensus pattern (18 bp):
CAATCTCTCTCTCTCTCT
Found at i:125539594 original size:55 final size:54
Alignment explanation
Indices: 125539489--125539740 Score: 250
Period size: 55 Copynumber: 4.7 Consensus size: 54
125539479 AGGGTTTAAA
* *
125539489 GATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTT-TCTAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCTATAAGGCAAG
* * * *
125539544 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGGC-AAG
* * * * *
125539600 G-TCCCATGTAAGACCATGCCAAGGCATGGAATTGGTGAGTTC-ATAAGGTAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAG
* * *
125539652 GATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-T-CAA---AAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAG
* * * *
125539701 GATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
125539741 GTACCCGTGT
Statistics
Matches: 167, Mismatches: 25, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
49 40 0.24
52 6 0.04
53 43 0.26
54 8 0.05
55 66 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAG
Found at i:125539692 original size:108 final size:110
Alignment explanation
Indices: 125539493--125539693 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
125539483 TTTAAAGATA
*
125539493 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
125539558 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
125539603 CCATGTAAGACCATGCCAAGGCATGG-AATTGGTGA-G-TTCATAAGGTAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
125539665 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
125539694 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.56
109 8 0.10
110 26 0.31
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:125576780 original size:24 final size:25
Alignment explanation
Indices: 125576744--125576792 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
125576734 TTCTGAAGGG
*
125576744 TTAAAAAATTCATT-AAAACTTTTT
1 TTAAAAAAGTCATTCAAAACTTTTT
*
125576768 TTAAAAAAGTCATTCAAATCTTTTT
1 TTAAAAAAGTCATTCAAAACTTTTT
125576793 ACGGAAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (25 bp):
TTAAAAAAGTCATTCAAAACTTTTT
Found at i:125577253 original size:13 final size:13
Alignment explanation
Indices: 125577231--125577268 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
125577221 TAAGGATATC
*
125577231 AATTTCTATAAAT
1 AATTTTTATAAAT
125577244 AATTTTTAT-AAT
1 AATTTTTATAAAT
125577256 AATTCTTTATAAA
1 AATT-TTTATAAA
125577269 ACAATCTACA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 7 0.32
13 13 0.59
14 2 0.09
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (13 bp):
AATTTTTATAAAT
Found at i:125584160 original size:21 final size:21
Alignment explanation
Indices: 125584120--125584158 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
125584110 ACTCAGAATA
125584120 TTTTTATTTTTAAGAATTTAT
1 TTTTTATTTTTAAGAATTTAT
125584141 TTTTTATTTTTAA-AATTT
1 TTTTTATTTTTAAGAATTT
125584159 TAAATTCAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (21 bp):
TTTTTATTTTTAAGAATTTAT
Found at i:125586848 original size:7 final size:7
Alignment explanation
Indices: 125586836--125586863 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
125586826 GATAATTTAT
125586836 TTTAATA
1 TTTAATA
125586843 TTTAATA
1 TTTAATA
125586850 TTTAATA
1 TTTAATA
125586857 TTTAATA
1 TTTAATA
125586864 AAATATAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTAATA
Found at i:125586848 original size:17 final size:17
Alignment explanation
Indices: 125586814--125586862 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 17
125586804 GAATCTCTCT
* **
125586814 TTTATTTTAAAAGATAA
1 TTTATTTTAATATTTAA
125586831 TTTATTTTAATATTTAA
1 TTTATTTTAATATTTAA
125586848 --TA-TTTAATATTTAA
1 TTTATTTTAATATTTAA
125586862 T
1 T
125586863 AAAATATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 12 0.43
15 2 0.07
17 14 0.50
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (17 bp):
TTTATTTTAATATTTAA
Found at i:125596262 original size:15 final size:15
Alignment explanation
Indices: 125596242--125596272 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
125596232 AAGTTCGATC
125596242 TTTAGATATTTTATT
1 TTTAGATATTTTATT
*
125596257 TTTAGATGTTTTATT
1 TTTAGATATTTTATT
125596272 T
1 T
125596273 AAACATTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.68
Consensus pattern (15 bp):
TTTAGATATTTTATT
Found at i:125598430 original size:32 final size:32
Alignment explanation
Indices: 125598394--125598456 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
125598384 AACTGAAGTG
125598394 GTGTTTCTTAACAAGTTGAGCCTGTATGAGTA
1 GTGTTTCTTAACAAGTTGAGCCTGTATGAGTA
**
125598426 GTGTTTCTTAATGAGTTGAGCCTGTATGAGT
1 GTGTTTCTTAACAAGTTGAGCCTGTATGAGT
125598457 GACCCAGCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.22, C:0.11, G:0.27, T:0.40
Consensus pattern (32 bp):
GTGTTTCTTAACAAGTTGAGCCTGTATGAGTA
Found at i:125605499 original size:6 final size:6
Alignment explanation
Indices: 125605490--125605516 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
125605480 TATAAGTCCC
125605490 TTGCTG TTGCTG TTGCTG TTGCTG TTG
1 TTGCTG TTGCTG TTGCTG TTGCTG TTG
125605517 TAAGTGTGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.33, T:0.52
Consensus pattern (6 bp):
TTGCTG
Found at i:125606023 original size:31 final size:28
Alignment explanation
Indices: 125605988--125606051 Score: 67
Period size: 31 Copynumber: 2.2 Consensus size: 28
125605978 TATATATATA
125605988 TATATGCAT-ATTTAGTTATGGATTTAATTTT
1 TATAT-CATAATTTAGTTAT---TTTAATTTT
**
125606019 TATATTTTAATTTAGTTATTTTAATTTT
1 TATATCATAATTTAGTTATTTTAATTTT
125606047 TATAT
1 TATAT
125606052 TTTTTAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 14 0.47
30 1 0.03
31 15 0.50
ACGTcount: A:0.30, C:0.02, G:0.08, T:0.61
Consensus pattern (28 bp):
TATATCATAATTTAGTTATTTTAATTTT
Found at i:125606029 original size:14 final size:14
Alignment explanation
Indices: 125606010--125606054 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
125606000 TAGTTATGGA
125606010 TTTAATTTTTATAT
1 TTTAATTTTTATAT
*
125606024 TTTAATTTAGT-TAT
1 TTTAATTT-TTATAT
125606038 TTTAATTTTTATAT
1 TTTAATTTTTATAT
125606052 TTT
1 TTT
125606055 TTAAATTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 1 0.04
14 25 0.93
15 1 0.04
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (14 bp):
TTTAATTTTTATAT
Found at i:125611720 original size:28 final size:28
Alignment explanation
Indices: 125611688--125611757 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
125611678 TATGGTACTC
* *
125611688 AGTGTACGAAATATTGAGAATGACACTT
1 AGTGTGCGAAATATTAAGAATGACACTT
*
125611716 AGTGTGCGAGATATTAAGAATGACACTT
1 AGTGTGCGAAATATTAAGAATGACACTT
*
125611744 AGTGTGCAAAATAT
1 AGTGTGCGAAATAT
125611758 CGAATGATTC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTAAGAATGACACTT
Found at i:125619861 original size:21 final size:21
Alignment explanation
Indices: 125619837--125619901 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
125619827 AAGTCTAGCT
125619837 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
** *
125619858 GAAGC-CCGAA-TGCT-AACT
1 GAAGCACATAAGTGCTAAACG
125619876 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
125619897 GAAGC
1 GAAGC
125619902 CCGAAGGCTA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 8 0.23
19 7 0.20
20 7 0.20
21 13 0.37
ACGTcount: A:0.40, C:0.22, G:0.25, T:0.14
Consensus pattern (21 bp):
GAAGCACATAAGTGCTAAACG
Found at i:125619862 original size:39 final size:39
Alignment explanation
Indices: 125619819--125619934 Score: 171
Period size: 39 Copynumber: 3.0 Consensus size: 39
125619809 ATCGTGATCT
*
125619819 GAAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGTCTAACTGAAGCACATAAGTGCTAAACG
125619858 GAAGCCCGAA-TGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGT-CTAACTGAAGCACATAAGTGCTAAACG
* * * *
125619897 GAAGCCCGAAGGCTAACTGAAGCTCATCAGAGCTAAAC
1 GAAGCCCGAAGTCTAACTGAAGCACATAAGTGCTAAAC
125619935 TTAAACCCCG
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
38 1 0.01
39 69 0.99
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (39 bp):
GAAGCCCGAAGTCTAACTGAAGCACATAAGTGCTAAACG
Found at i:125619873 original size:19 final size:19
Alignment explanation
Indices: 125619849--125619912 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
125619839 AGCACATAAG
125619849 TGCTAAACGGAAGCCCGAA
1 TGCTAAACGGAAGCCCGAA
* **
125619868 TGCT-AACTGAAGCACATAA
1 TGCTAAACGGAAGC-CCGAA
125619887 GTGCTAAACGGAAGCCCGAA
1 -TGCTAAACGGAAGCCCGAA
*
125619907 GGCTAA
1 TGCTAA
125619913 CTGAAGCTCA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
18 8 0.23
19 12 0.34
20 7 0.20
21 8 0.23
ACGTcount: A:0.38, C:0.23, G:0.25, T:0.14
Consensus pattern (19 bp):
TGCTAAACGGAAGCCCGAA
Found at i:125621641 original size:42 final size:42
Alignment explanation
Indices: 125621586--125621670 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
125621576 CTTTATTAAG
125621586 TAAATTTTACAATTTTCCAATTTTTCCCTTAATTCTCCTTAT
1 TAAATTTTACAATTTTCCAATTTTTCCCTTAATTCTCCTTAT
*
125621628 TAAATTTTGCAATTTTCCAATTTTTCCCTTAATTCTCCTTAT
1 TAAATTTTACAATTTTCCAATTTTTCCCTTAATTCTCCTTAT
125621670 T
1 T
125621671 TTCTTCCTGA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.25, C:0.21, G:0.01, T:0.53
Consensus pattern (42 bp):
TAAATTTTACAATTTTCCAATTTTTCCCTTAATTCTCCTTAT
Found at i:125628299 original size:2 final size:2
Alignment explanation
Indices: 125628294--125628328 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
125628284 ACACACACAC
* *
125628294 AT AT AT AT AT AT AT AT AT AA AT AT AA AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
125628329 CTATTATAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:125634618 original size:6 final size:6
Alignment explanation
Indices: 125634586--125634629 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
125634576 ACAATACCTA
* * *
125634586 AACAGT AATCAGA AACGGT AGCAGT AACAGT AACAGT AACAGT A
1 AACAGT AA-CAGT AACAGT AACAGT AACAGT AACAGT AACAGT A
125634630 TTCAAAACAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.48, C:0.16, G:0.20, T:0.16
Consensus pattern (6 bp):
AACAGT
Found at i:125634697 original size:45 final size:45
Alignment explanation
Indices: 125634609--125634719 Score: 134
Period size: 45 Copynumber: 2.5 Consensus size: 45
125634599 AACGGTAGCA
* *
125634609 GTAACAGTAACAGTAACAGTATTCAAAACATAAAGTGCTGAATCT
1 GTAACAGTAACAGTAACAGTATTCAAAACACAAAGTGCTGAATCG
* * *
125634654 GTAATAGTAACAGTAACAGTATTCGACACACAAAGTG-TCGAATCG
1 GTAACAGTAACAGTAACAGTATTCAAAACACAAAGTGCT-GAATCG
* **
125634699 GTAACATTAATGGTAACAGTA
1 GTAACAGTAACAGTAACAGTA
125634720 GCAGTAGTCA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
44 1 0.02
45 55 0.98
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.24
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAGTATTCAAAACACAAAGTGCTGAATCG
Found at i:125635290 original size:16 final size:18
Alignment explanation
Indices: 125635269--125635305 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
125635259 ATCTCTAGTT
125635269 TTTCC-TTTTTCTTT-TC
1 TTTCCTTTTTTCTTTCTC
125635285 TTTCCTTTTTTCTTTCTC
1 TTTCCTTTTTTCTTTCTC
125635303 TTT
1 TTT
125635306 TTCTCCCCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.26
17 9 0.47
18 5 0.26
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTCCTTTTTTCTTTCTC
Found at i:125635814 original size:20 final size:19
Alignment explanation
Indices: 125635787--125635828 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
125635777 ATATAAAACT
125635787 ATAACAATTA-ATAATTATA
1 ATAACAATTATATAA-TATA
125635806 ATAATCAATTATATAATATA
1 ATAA-CAATTATATAATATA
125635826 ATA
1 ATA
125635829 TATATAATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 13 0.62
21 4 0.19
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
ATAACAATTATATAATATA
Found at i:125641964 original size:45 final size:45
Alignment explanation
Indices: 125641856--125641965 Score: 141
Period size: 45 Copynumber: 2.4 Consensus size: 45
125641846 AAACGATAGT
*
125641856 AGTAACAATAACAGTAACAGTATTCAACACACAAAGTGCTGAATT
1 AGTAACAATAACAGTAACAGTATTCAACACACAAAGTGCTGAATC
* * * * *
125641901 TGTAATAGTAACGGTAACAGTATTCGACACACAAAGTG-TCGAATC
1 AGTAACAATAACAGTAACAGTATTCAACACACAAAGTGCT-GAATC
*
125641946 AGTAACAATAACAATAACAG
1 AGTAACAATAACAGTAACAG
125641966 CAACAATAGT
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
44 1 0.02
45 52 0.98
ACGTcount: A:0.45, C:0.17, G:0.15, T:0.22
Consensus pattern (45 bp):
AGTAACAATAACAGTAACAGTATTCAACACACAAAGTGCTGAATC
Found at i:125642533 original size:17 final size:18
Alignment explanation
Indices: 125642511--125642544 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
125642501 TCTAGTTTTT
*
125642511 CCTTTTTCTTT-TCTTTC
1 CCTTTTTATTTCTCTTTC
125642528 CCTTTTTATTTCTCTTT
1 CCTTTTTATTTCTCTTT
125642545 TTCTCCCCTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.71
Consensus pattern (18 bp):
CCTTTTTATTTCTCTTTC
Found at i:125642619 original size:9 final size:9
Alignment explanation
Indices: 125642605--125642634 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
125642595 TCTTTTATCT
125642605 TTTATTTAC
1 TTTATTTAC
125642614 TTTATTTAC
1 TTTATTTAC
125642623 TTTATTTA-
1 TTTATTTAC
125642631 TTTA
1 TTTA
125642635 ATTAGCATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.19
9 17 0.81
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (9 bp):
TTTATTTAC
Found at i:125645032 original size:24 final size:24
Alignment explanation
Indices: 125644988--125645033 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
125644978 GATATTTTAA
*
125644988 TAAAAAATATATATTAAATTAACT
1 TAAAAAATATATAATAAATTAACT
*
125645012 TAAAAAATA-AGTAATATATTAA
1 TAAAAAATATA-TAATAAATTAA
125645034 TTTATATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.05
24 18 0.95
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (24 bp):
TAAAAAATATATAATAAATTAACT
Found at i:125645046 original size:8 final size:8
Alignment explanation
Indices: 125645035--125645098 Score: 60
Period size: 8 Copynumber: 7.8 Consensus size: 8
125645025 ATATATTAAT
125645035 TTATATTA
1 TTATATTA
125645043 TTATATTA
1 TTATATTA
*
125645051 TTACATTA
1 TTATATTA
125645059 -TATA-TA
1 TTATATTA
125645065 TTATATTA
1 TTATATTA
*
125645073 TTTTATATA
1 TTATAT-TA
125645082 TATATATATA
1 T-TATAT-TA
125645092 TATATAT
1 T-TATAT
125645099 ATATGTAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
6 2 0.04
7 7 0.15
8 22 0.46
9 3 0.06
10 14 0.29
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.58
Consensus pattern (8 bp):
TTATATTA
Found at i:125645064 original size:2 final size:2
Alignment explanation
Indices: 125645057--125645102 Score: 62
Period size: 2 Copynumber: 24.5 Consensus size: 2
125645047 ATTATTACAT
*
125645057 TA TA TA TA T- TA TA T- TA T- TT TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
125645096 TA TA TA T
1 TA TA TA T
125645103 GTAAAACAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
1 3 0.08
2 37 0.93
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (2 bp):
TA
Found at i:125645089 original size:10 final size:9
Alignment explanation
Indices: 125645025--125645102 Score: 81
Period size: 10 Copynumber: 8.7 Consensus size: 9
125645015 AAAATAAGTA
125645025 ATATATTAAT
1 ATATATT-AT
*
125645035 TTATATTAT
1 ATATATTAT
125645044 -TATATTAT
1 ATATATTAT
*
125645052 -TACATTAT
1 ATATATTAT
125645060 ATATATTAT
1 ATATATTAT
*
125645069 AT-TATTTT
1 ATATATTAT
125645077 ATATATATAT
1 ATATAT-TAT
125645087 ATATATATAT
1 ATATAT-TAT
125645097 ATATAT
1 ATATAT
125645103 GTAAAACAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
8 22 0.37
9 14 0.23
10 24 0.40
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.56
Consensus pattern (9 bp):
ATATATTAT
Found at i:125646164 original size:58 final size:58
Alignment explanation
Indices: 125646074--125646191 Score: 200
Period size: 58 Copynumber: 2.0 Consensus size: 58
125646064 AAATATAGTG
* * *
125646074 ATTGGTAGCAATTTCGCATAAGTTGTGGGCTACCGTAGCTCTGTGTGAGCATCGATGT
1 ATTGGTAGCAATTCCACATAAGTTGTGGGCTACCGTAGCTCTGTGTGAGCATCGAAGT
*
125646132 ATTGGTAGTAATTCCACATAAGTTGTGGGCTACCGTAGCTCTGTGTGAGCATCGAAGT
1 ATTGGTAGCAATTCCACATAAGTTGTGGGCTACCGTAGCTCTGTGTGAGCATCGAAGT
125646190 AT
1 AT
125646192 ATGATTTACC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (58 bp):
ATTGGTAGCAATTCCACATAAGTTGTGGGCTACCGTAGCTCTGTGTGAGCATCGAAGT
Found at i:125648678 original size:26 final size:24
Alignment explanation
Indices: 125648649--125648700 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 24
125648639 AGATGAAAAC
125648649 TAAAAGTCTGA-TATTTGTTATTCTTT
1 TAAAA-TCTGATTATTTGTT-TT-TTT
*
125648675 TAAAATCTTATTATTTGTTTTTTT
1 TAAAATCTGATTATTTGTTTTTTT
125648699 TA
1 TA
125648701 TCGATTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 5 0.21
25 6 0.25
26 13 0.54
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.60
Consensus pattern (24 bp):
TAAAATCTGATTATTTGTTTTTTT
Found at i:125649671 original size:41 final size:41
Alignment explanation
Indices: 125649563--125649770 Score: 296
Period size: 41 Copynumber: 5.1 Consensus size: 41
125649553 GTAAAAATTG
* *
125649563 TAAAACAC-AGAGCAATAGCGGCGTTTTTGGTAAAACGCCGC
1 TAAAA-ACTAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* * *
125649604 TAAAAAC-AAAGCATTAGTGGCGCTTTTGGTAAAATGCCGC
1 TAAAAACTAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* * *
125649644 TAAAAGCTAGAGCATTAGCAGCTCTTTTGGTAAAACGCCGC
1 TAAAAACTAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
125649685 TAAAAACTAGA-CATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAACTAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* *
125649725 TAAAAAATAGAGCATTAGCGGCGCTTTTGGTAAAACGCCAC
1 TAAAAACTAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
125649766 TAAAA
1 TAAAA
125649771 GTCATATAAC
Statistics
Matches: 149, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
40 73 0.49
41 76 0.51
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (41 bp):
TAAAAACTAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:125649700 original size:81 final size:81
Alignment explanation
Indices: 125649571--125649770 Score: 285
Period size: 81 Copynumber: 2.5 Consensus size: 81
125649561 TGTAAAACAC
* * * *
125649571 AGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAACAAAGCATTAGTGGCGCTTTTGGTAA
1 AGAGCATTAGCAGCGCTTTTGGTAAAACGCCGCTAAAAACAAAGCATTAGCGGCGCTTTTGGTAA
* **
125649636 AATGCCGCTAAAAGCT
66 AACGCCGCTAAAAAAT
* *
125649652 AGAGCATTAGCAGCTCTTTTGGTAAAACGCCGCTAAAAAC-TAGACATTAGCGGCGCTTTTGGTA
1 AGAGCATTAGCAGCGCTTTTGGTAAAACGCCGCTAAAAACAAAG-CATTAGCGGCGCTTTTGGTA
125649716 AAACGCCGCTAAAAAAT
65 AAACGCCGCTAAAAAAT
* *
125649733 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCACTAAAA
1 AGAGCATTAGCAGCGCTTTTGGTAAAACGCCGCTAAAA
125649771 GTCATATAAC
Statistics
Matches: 106, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 2 0.02
81 104 0.98
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (81 bp):
AGAGCATTAGCAGCGCTTTTGGTAAAACGCCGCTAAAAACAAAGCATTAGCGGCGCTTTTGGTAA
AACGCCGCTAAAAAAT
Found at i:125649868 original size:17 final size:18
Alignment explanation
Indices: 125649840--125649873 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
125649830 TTAAAATAGT
*
125649840 AAACCTCTAAACCCTAAC
1 AAACCTCTAAACACTAAC
125649858 AAACC-CTAAACACTAA
1 AAACCTCTAAACACTAA
125649874 ACTATAACCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (18 bp):
AAACCTCTAAACACTAAC
Found at i:125650410 original size:24 final size:24
Alignment explanation
Indices: 125650383--125650431 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
125650373 CGTATATTTG
125650383 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
125650407 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
125650431 T
1 T
125650432 GTTATTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAAAAGTTTATATAAAAATTAAT
Found at i:125651038 original size:19 final size:19
Alignment explanation
Indices: 125651014--125651053 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
125651004 AGATCTTTTT
*
125651014 TATTTTTTTATCAAAATAA
1 TATTTTTATATCAAAATAA
*
125651033 TATTTTTATATGAAAATAA
1 TATTTTTATATCAAAATAA
125651052 TA
1 TA
125651054 AATATGATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (19 bp):
TATTTTTATATCAAAATAA
Found at i:125652704 original size:2 final size:2
Alignment explanation
Indices: 125652697--125652721 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
125652687 TAAGCAGTGC
125652697 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
125652722 GAATGTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:125656255 original size:19 final size:19
Alignment explanation
Indices: 125656233--125656273 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
125656223 TTTATTGATA
125656233 TTTTTA-TATTTAATCTAG
1 TTTTTATTATTTAATCTAG
* *
125656251 TTTTTATTATTTATTTTAG
1 TTTTTATTATTTAATCTAG
125656270 TTTT
1 TTTT
125656274 GATTCTGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (19 bp):
TTTTTATTATTTAATCTAG
Found at i:125656486 original size:26 final size:23
Alignment explanation
Indices: 125656450--125656498 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 23
125656440 TTAATAGAAA
125656450 ATTTTTATATTTATATCATGGACATT
1 ATTTTTATATTT-T-TCAT-GACATT
125656476 ATTTTTATATTTTTCATGACATT
1 ATTTTTATATTTTTCATGACATT
125656499 TATAATATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 6 0.26
24 4 0.17
25 1 0.04
26 12 0.52
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.57
Consensus pattern (23 bp):
ATTTTTATATTTTTCATGACATT
Found at i:125657588 original size:50 final size:51
Alignment explanation
Indices: 125657492--125657591 Score: 141
Period size: 52 Copynumber: 2.0 Consensus size: 51
125657482 AGATAGAAAG
* * *
125657492 AATATATCAAAAGAATATATATAGATGCAAGTTTCACTTACGGATGCATGCA
1 AATATATCAAAAGAATATATACACA-GCAAGTTTCACTTACAGATGCATGCA
125657544 AATATATCAAAAGAATATATACACA-CACA-TTTCACTTACAGATGCATG
1 AATATATCAAAAGAATATATACACAGCA-AGTTTCACTTACAGATGCATG
125657592 AAGCAAAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
50 20 0.45
51 1 0.02
52 23 0.52
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (51 bp):
AATATATCAAAAGAATATATACACAGCAAGTTTCACTTACAGATGCATGCA
Found at i:125657635 original size:114 final size:113
Alignment explanation
Indices: 125657501--125657719 Score: 357
Period size: 114 Copynumber: 1.9 Consensus size: 113
125657491 GAATATATCA
* * * *
125657501 AAAGAATATATATAGATGCAAGTTTCACTTACGGATGCATGCAAATATATCAAAAGAATATATAC
1 AAAGAATATATATACATGCAAATTTCACTTACGGATACATGCAAATATATAAAAAGAATATATAC
*
125657566 ACACACATTTCACTTACAGATGCATGAAGCAAAATTTATAACAGATAG
66 ACACACATTTCACTTACAGATGCAGGAAGCAAAATTTATAACAGATAG
*
125657614 AAAGAAATATATATACATGCAAATTTCACTTATGGATACATGCAAATATATAAAAAGAATATATA
1 AAAG-AATATATATACATGCAAATTTCACTTACGGATACATGCAAATATATAAAAAGAATATATA
* *
125657679 TACACATATTTCACTTACAGATGCAGGAAGCAAAATTTATA
65 CACACACATTTCACTTACAGATGCAGGAAGCAAAATTTATA
125657720 TGGAATGTGC
Statistics
Matches: 97, Mismatches: 8, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
113 4 0.04
114 93 0.96
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.28
Consensus pattern (113 bp):
AAAGAATATATATACATGCAAATTTCACTTACGGATACATGCAAATATATAAAAAGAATATATAC
ACACACATTTCACTTACAGATGCAGGAAGCAAAATTTATAACAGATAG
Found at i:125658363 original size:26 final size:26
Alignment explanation
Indices: 125658327--125658382 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
125658317 AAGAAAACCG
125658327 AATATGCATTGATCCATGGACAGACT
1 AATATGCATTGATCCATGGACAGACT
*
125658353 AATATGCATTGATCCATGGACTGACT
1 AATATGCATTGATCCATGGACAGACT
125658379 AATA
1 AATA
125658383 CGCACCACCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (26 bp):
AATATGCATTGATCCATGGACAGACT
Found at i:125665103 original size:19 final size:19
Alignment explanation
Indices: 125665061--125665121 Score: 99
Period size: 19 Copynumber: 3.3 Consensus size: 19
125665051 CATATCATAT
*
125665061 CATATCATATATAAGATT-
1 CATATCATATCTAAGATTG
125665079 -ATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
125665097 CATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
125665116 CATATC
1 CATATC
125665122 CTTAAAGATT
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
17 16 0.40
19 24 0.60
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.38
Consensus pattern (19 bp):
CATATCATATCTAAGATTG
Found at i:125665680 original size:87 final size:86
Alignment explanation
Indices: 125665516--125665680 Score: 199
Period size: 87 Copynumber: 1.9 Consensus size: 86
125665506 ACAATACAGA
* *
125665516 GATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTGTGTCTTCG
1 GATGCCAAATCATCTTAGATCTGCTTCA-CGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCA
*
125665581 ATTTGCTCCTTGTGAACACAAG
65 ATCTGCTCCTTGTGAACACAAG
* * * *
125665603 GATGCCAAATCATCTTGGATCTGCTTCA-GTAAAATCATC-TGAAGGTCAGATCTGCTATGTCTT
1 GATGCCAAATCATCTTAGATCTGCTTCACGT-AAA-CA-CGTGAAAGCCAAATCTGCTATGTCTT
* *
125665666 TAATCTGCTTCTTGT
63 CAATCTGCTCCTTGT
125665681 AAACTTATGA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
85 2 0.03
86 3 0.05
87 60 0.91
88 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (86 bp):
GATGCCAAATCATCTTAGATCTGCTTCACGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCAA
TCTGCTCCTTGTGAACACAAG
Found at i:125665870 original size:261 final size:256
Alignment explanation
Indices: 125665428--125665918 Score: 714
Period size: 261 Copynumber: 1.9 Consensus size: 256
125665418 TCAAACTCAA
* * * *
125665428 GACTGTCATGTTGATATCTTCGATCTGCTCTTCGTCAAACACAGAGACGCCAAATCTGCTTCTTC
1 GACTGTCATGTTAATATCTTCAATCTGCTCTCCGCCAAACACAGAGACGCCAAATCTGCTTCTTC
* * **
125665493 GATTTGTTTTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGA
66 GATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCAA
* * * * *
125665558 AAGCCAAATCTGCTGTGTCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGGAT
131 AAACCAAATCAGCTATGCCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAACCATCTTGGAT
125665623 CTGCTTCAGTAAAATCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTA
196 CTGCTTCAG-----TCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTA
125665688 T
256 T
* * * * * *
125665689 GACTGTCCTGTTAATATCTTCAATCTGCTCTCCGCCGAATATAGAGACGCCAAATCTGTTTCTTT
1 GACTGTCATGTTAATATCTTCAATCTGCTCTCCGCCAAACACAGAGACGCCAAATCTGCTTCTTC
* *
125665754 GATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGCAA
66 GATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCAA
*
125665819 AAACCAAATCAGCTATGCCTTCGATTTGTTCCTTGT-AAGCACAAGGATGCCAAACCATCTTGGA
131 AAACCAAATCAGCTATGCCTTCGATTTGCTCCTTGTGAA-CACAAGGATGCCAAACCATCTTGGA
*
125665883 TCTGCTTCAGTCATCTGAAGGTTAGATCTGCTATGT
195 TCTGCTTCAGTCATCTGAAGGTCAGATCTGCTATGT
125665919 ATCTGCTCTC
Statistics
Matches: 206, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
256 25 0.12
260 2 0.01
261 179 0.87
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.33
Consensus pattern (256 bp):
GACTGTCATGTTAATATCTTCAATCTGCTCTCCGCCAAACACAGAGACGCCAAATCTGCTTCTTC
GATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCAA
AAACCAAATCAGCTATGCCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAACCATCTTGGAT
CTGCTTCAGTCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTAT
Found at i:125666204 original size:205 final size:205
Alignment explanation
Indices: 125665754--125666913 Score: 1952
Period size: 205 Copynumber: 5.7 Consensus size: 205
125665744 CTGTTTCTTT
* **
125665754 GATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGCAA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGA
* *
125665819 AAACCAAATCAGCTATGCCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
125665884 CTGCTTCAG--T---CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGAT
131 CTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGAT
125665944 GCCAGACTTC
196 GCCAGACTTC
* * *
125665954 TATTTGTTCTCTGACAATACAGAGATGCTAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGA
*
125666019 AAGCCAAATCAGCTATGTTTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
*
125666084 CTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAAATGGAGAT
131 CTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGAT
125666149 GCCAGACTTC
196 GCCAGACTTC
* * * * *
125666159 AATTTGTTCTCTGATAATATAGAGATGCCAAATCATCTTAGATTTGTTTCATCGTAAGCACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGA
* *
125666224 AAGCCAAATCAACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTAGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
*
125666289 CTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGAT
131 CTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGAT
125666354 GCCAGACTTC
196 GCCAGACTTC
* * *
125666364 GATTTGTTCTCTGACAATACAGAGATGTCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGA
125666429 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
* * *
125666494 CTGCTTCACTATAAACATCTGAAGGTTAGATTTGCTTTGTATCTGCTCTCCGTCGAAATGGAGAT
131 CTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGAT
125666559 GCCAGACTTC
196 GCCAGACTTC
*
125666569 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGA
* * *
125666634 AAGCCAAATCAGCTATGTCTGCGATTTGTTCCTTGTAAACACAAGGATGCCAAACTATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
* * *
125666699 CTGCTTCAGTATAAATAACTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGAAGAT
131 CTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGAT
*
125666764 GCCAAACTTC
196 GCCAGACTTC
*
125666774 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATTTTAGATTTGCTTCAGCGTAAGCACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGA
* * *
125666839 AAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACTATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
125666904 CTTGCTTCAG
131 C-TGCTTCAG
125666914 CCAGATCTGC
Statistics
Matches: 904, Mismatches: 50, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
200 130 0.14
202 1 0.00
205 765 0.85
206 8 0.01
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (205 bp):
GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGA
AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
CTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGAT
GCCAGACTTC
Found at i:125667865 original size:1 final size:1
Alignment explanation
Indices: 125667855--125667908 Score: 63
Period size: 1 Copynumber: 54.0 Consensus size: 1
125667845 GGCCTCTCCA
* * * * *
125667855 TTTTTCTTTTTTTTTTTTTTTTTTTTTTTCTCTTTTTCTTTTCTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
125667909 GAAATAGAAG
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (1 bp):
T
Found at i:125684771 original size:43 final size:44
Alignment explanation
Indices: 125684676--125684838 Score: 154
Period size: 43 Copynumber: 3.8 Consensus size: 44
125684666 ATCAAGATGT
* * * *
125684676 GATTACATGTAAGACCATGTCTGGGACATTGACAT-TTTATTGA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATGA
* *
125684719 GATTACGTGTAAGACCATGTCTGAGACATTGGCATCGTTAAT-C
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATGA
* * * * * *
125684762 GATTTCGTGTAAGACCCTATCTGGGACAGTGGCATCGAT-ATGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATGA
* * * *
125684805 GATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCAT
125684839 TGTACAAGCT
Statistics
Matches: 100, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
42 8 0.08
43 88 0.88
44 4 0.04
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.31
Consensus pattern (44 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATGA
Found at i:125689259 original size:19 final size:19
Alignment explanation
Indices: 125689235--125689275 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
125689225 CATAATAATA
* * *
125689235 TATATAGTTATATTTTTAT
1 TATATAATTACATATTTAT
125689254 TATATAATTACATATTTAT
1 TATATAATTACATATTTAT
125689273 TAT
1 TAT
125689276 TTTATTTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (19 bp):
TATATAATTACATATTTAT
Found at i:125689260 original size:28 final size:28
Alignment explanation
Indices: 125689229--125689288 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 28
125689219 TTTTAACATA
*
125689229 ATAATATATATAGTTA-TATTTT-TATTAT
1 ATAAT-TACATAGTTATTATTTTAT-TTAT
*
125689257 ATAATTACATATTTATTATTTTATTTAT
1 ATAATTACATAGTTATTATTTTATTTAT
125689285 ATAA
1 ATAA
125689289 ATAAAAGCGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 8 0.29
28 19 0.68
29 1 0.04
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (28 bp):
ATAATTACATAGTTATTATTTTATTTAT
Found at i:125692762 original size:39 final size:39
Alignment explanation
Indices: 125692706--125692783 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
125692696 CAATATTCAA
* *
125692706 ATAACCTGACCAACAGTTAAATCGATCAGCCCATTGGTT
1 ATAACCAGACCAACAGTTAAATCGATAAGCCCATTGGTT
* *
125692745 ATAACCAGACCAGCAGTTAAATTGATAAGCCCATTGGTT
1 ATAACCAGACCAACAGTTAAATCGATAAGCCCATTGGTT
125692784 TTCGATACAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.26
Consensus pattern (39 bp):
ATAACCAGACCAACAGTTAAATCGATAAGCCCATTGGTT
Found at i:125693414 original size:13 final size:13
Alignment explanation
Indices: 125693398--125693433 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
125693388 ATTTTCTCTT
*
125693398 CTTTTTTTTTTTG
1 CTTTTTTTTTTTA
125693411 CTTTTTTTTTTTA
1 CTTTTTTTTTTTA
125693424 CTTCTTTTTT
1 CTT-TTTTTT
125693434 GTGTCATAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 15 0.71
14 6 0.29
ACGTcount: A:0.03, C:0.11, G:0.03, T:0.83
Consensus pattern (13 bp):
CTTTTTTTTTTTA
Found at i:125695613 original size:46 final size:44
Alignment explanation
Indices: 125695509--125695616 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
125695499 TCTCTTTGAC
** * * *
125695509 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
125695553 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
125695599 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
125695617 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:125697278 original size:2 final size:2
Alignment explanation
Indices: 125697271--125697312 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
125697261 AGTGAATAAC
125697271 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
125697313 CTTTGAATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:125701129 original size:2 final size:2
Alignment explanation
Indices: 125701122--125701167 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
125701112 GGTAAGGATA
125701122 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
125701164 AT AT
1 AT AT
125701168 GTCTTTGTTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:125701300 original size:28 final size:28
Alignment explanation
Indices: 125701268--125701325 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
125701258 TTTCGGTGGA
*
125701268 TGTTAGATAAATTGGGATAACATGTATT
1 TGTTAAATAAATTGGGATAACATGTATT
125701296 TGTTAAATAAATTGGGATAACATGTATT
1 TGTTAAATAAATTGGGATAACATGTATT
125701324 TG
1 TG
125701326 ATATTAAAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.36, C:0.03, G:0.21, T:0.40
Consensus pattern (28 bp):
TGTTAAATAAATTGGGATAACATGTATT
Found at i:125707888 original size:35 final size:34
Alignment explanation
Indices: 125707859--125708025 Score: 178
Period size: 35 Copynumber: 4.7 Consensus size: 34
125707849 TCCATGGCAA
125707859 AGTGTGAAATGTAGGTATGGTATCATCCATACTG
1 AGTGTGAAATGTAGGTATGGTATCATCCATACTG
*
125707893 AGTTGTGAAATGTAGGTATGGTATTATCCATACTG
1 AG-TGTGAAATGTAGGTATGGTATCATCCATACTG
125707928 AGTGTGAAATGTAGGTATGGTATTATCAAATCCATACTG
1 AGTGTGAAATGTAGGTATGG---TATC--ATCCATACTG
* * *
125707967 AGT-TAAGAAATGTAGGTATGGCAT-TTCCCATACCG
1 AGTGT--GAAATGTAGGTATGGTATCAT-CCATACTG
125708002 AGT-TGAAAAATGTAGGTATGGTAT
1 AGTGTG--AAATGTAGGTATGGTAT
125708026 TTCAATGAGG
Statistics
Matches: 116, Mismatches: 6, Indels: 21
0.81 0.04 0.15
Matches are distributed among these distances:
33 1 0.01
34 21 0.18
35 60 0.52
37 5 0.04
38 1 0.01
39 13 0.11
40 15 0.13
ACGTcount: A:0.32, C:0.10, G:0.25, T:0.33
Consensus pattern (34 bp):
AGTGTGAAATGTAGGTATGGTATCATCCATACTG
Found at i:125707981 original size:74 final size:74
Alignment explanation
Indices: 125707859--125708030 Score: 225
Period size: 74 Copynumber: 2.4 Consensus size: 74
125707849 TCCATGGCAA
** *
125707859 AGTGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTA
1 AGTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-
*
125707919 T-CCATACTG
65 TCCCATACCG
125707928 AGTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTT
1 AGTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTT
125707993 CCCATACCG
66 CCCATACCG
125708002 AGT-TGAAAAATGTAGGTATGGTATT-TCAA
1 AGTGTG--AAATGTAGGTATGGTATTATCAA
125708031 TGAGGAAAAC
Statistics
Matches: 91, Mismatches: 4, Indels: 11
0.86 0.04 0.10
Matches are distributed among these distances:
69 20 0.22
72 4 0.04
73 3 0.03
74 46 0.51
75 18 0.20
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.33
Consensus pattern (74 bp):
AGTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTT
CCCATACCG
Found at i:125714523 original size:35 final size:35
Alignment explanation
Indices: 125714496--125714661 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
125714486 CATGGCAAAG
*
125714496 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
125714531 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
125714566 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
125714606 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
125714641 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
125714662 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:125714615 original size:75 final size:75
Alignment explanation
Indices: 125714496--125714666 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
125714486 CATGGCAAAG
** *
125714496 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
125714555 CCATACTGAGC
65 CCATACCGAGC
125714566 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
125714631 CATACCGAGT
66 CATACCGAGC
**
125714641 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
125714667 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:125717591 original size:402 final size:397
Alignment explanation
Indices: 125716840--125717581 Score: 878
Period size: 402 Copynumber: 1.9 Consensus size: 397
125716830 TTAAAACAGT
* * * *
125716840 CAAAATTTTGAAAGAGTATACAGTTTTGATTTCTTAAAATGAGCCAAAAAGTTATGGAAAATCTC
1 CAAAATTTTGAAAGAGCATACAGTTTTGATTGCTTAAAATGAGCCAAAAAGTAATGGAAAATCTA
*
125716905 AAATATAAAGTAAAAAAATCAATTTTATTTCATTTTAATAGTATTGTTTGCCAAATTATGTTTTA
66 AAATATAAAGTAAAAAAATCAATTTTATTTCATTTTAATAGTATTGTTGGCCAAATTATGTTTTA
* * *
125716970 TTAAGGTAAAAAACATATTAAATTAATTATGAAATTTTTTTGTTGAATTTTTATATTTATATATA
131 TTAAGGCAAAAAACATATTAAATTAATTATGAAATTTTATTGTTGAATTTTTATATTTATATACA
* * ***
125717035 TATACTATAAAATTGTAGAATTTTCACATTTGTTTAATTATTGGGAGATTACCGTTCAACCAAAA
196 TATA-TACAAAATTGTAGAATTTTCACAGTTGTTTAATTATCAAGAGATTACC--TCAACCAAAA
* * * ** * * *
125717100 TGCCATGGGATCAAAACCCTAGGATGAAGCCAAAATGAACCCCAAACTTAAACTAAAACAATAAC
258 TGCAAAGGAATCAAAACCCTAAAACGAAGCCAAAATAAACCCCAAACTGAAACTAAAACAATAAC
*
125717165 CTTAAAACAAAAGCAAATCTAAACCCAAACCTAAAACCTAAGTCGAAACCTAAAACTTATAGCTT
323 CTTAAAACAAAAGCAAATCTAAACCAAAACCTAAAACCTAAGTCGAAACCTAAAACTTATAGCTT
125717230 TTAAAACCAC
388 TTAAAACCAC
** * *
125717240 CAAAATTTTGAAAGAGCATTTAGTTTTGATTGCTTAAAATGAGCCAAAAAGTAATGGAAATTTTA
1 CAAAATTTTGAAAGAGCATACAGTTTTGATTGCTTAAAATGAGCCAAAAAGTAATGGAAAATCTA
* **** * *
125717305 AAATATAGAGTACAATTTTTTTGAA-TTTATTTCATTTTAATATTATTGTTGGCCAAATTATGTT
66 AAATATAAAGTA-AA--AAAATCAATTTTATTTCATTTTAATAGTATTGTTGGCCAAATTATGTT
* *
125717369 TTATTAAGGCAAACAACATATTAAATTAATTGTGAAATTTTATT-TTGAATTTTTAT-TTT-TAT
128 TTATTAAGGCAAAAAACATATTAAATTAATTATGAAATTTTATTGTTGAATTTTTATATTTATAT
* * *
125717431 ACATAT-TACAAAATTGTAGAAGTTTT-ATAGTTGTTTAGTTACTCAAGAGATTA-C-CACCCAA
193 ACATATATACAAAATTGTAGAA-TTTTCACAGTTGTTTAATTA-TCAAGAGATTACCTCAACCAA
* * * * * *
125717492 TA-G-AAAGGAATCGAAACCCTAAAACGAAGCCAAAACATAAATCTCACACTGCAACTAAAATC-
256 AATGCAAAGGAATCAAAACCCTAAAACGAAGCC-AAA-ATAAACCCCAAACTGAAACTAAAA-CA
* *
125717554 ATAACCCTAAATA-AAAAGTAAATCTAAA
318 ATAACCTTAAA-ACAAAAGCAAATCTAAA
125717582 AATCTAAACC
Statistics
Matches: 288, Mismatches: 45, Indels: 24
0.81 0.13 0.07
Matches are distributed among these distances:
392 21 0.07
393 4 0.01
394 49 0.17
395 2 0.01
397 27 0.09
398 12 0.04
399 8 0.03
400 71 0.25
401 14 0.05
402 77 0.27
403 3 0.01
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (397 bp):
CAAAATTTTGAAAGAGCATACAGTTTTGATTGCTTAAAATGAGCCAAAAAGTAATGGAAAATCTA
AAATATAAAGTAAAAAAATCAATTTTATTTCATTTTAATAGTATTGTTGGCCAAATTATGTTTTA
TTAAGGCAAAAAACATATTAAATTAATTATGAAATTTTATTGTTGAATTTTTATATTTATATACA
TATATACAAAATTGTAGAATTTTCACAGTTGTTTAATTATCAAGAGATTACCTCAACCAAAATGC
AAAGGAATCAAAACCCTAAAACGAAGCCAAAATAAACCCCAAACTGAAACTAAAACAATAACCTT
AAAACAAAAGCAAATCTAAACCAAAACCTAAAACCTAAGTCGAAACCTAAAACTTATAGCTTTTA
AAACCAC
Found at i:125722078 original size:35 final size:34
Alignment explanation
Indices: 125722009--125722157 Score: 174
Period size: 35 Copynumber: 4.3 Consensus size: 34
125721999 AAGTATGCCT
* * *
125722009 CCTTGAAGGCTATGT-TTAAGAAGATGCAGTATG
1 CCTTGAAGGCTAAGTGTTAAGAAGACGAAGTATG
*
125722042 CCTTGAAGGCTAAGTGTTATAGAAGACGAAGCATG
1 CCTTGAAGGCTAAGTGTTA-AGAAGACGAAGTATG
* * * *
125722077 CCTTGAAGGCTAAGTATTTGAGAAGATGAAGTTTG
1 CCTTGAAGGCTAAGT-GTTAAGAAGACGAAGTATG
* *
125722112 CCTTAAAGGCTAAGTGTTGAAGAAGACAAAGTATG
1 CCTTGAAGGCTAAGTGTT-AAGAAGACGAAGTATG
125722147 CCTTGAAGGCT
1 CCTTGAAGGCT
125722158 GTGTCTAAGA
Statistics
Matches: 96, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
33 14 0.15
34 5 0.05
35 75 0.78
36 2 0.02
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.27
Consensus pattern (34 bp):
CCTTGAAGGCTAAGTGTTAAGAAGACGAAGTATG
Found at i:125722114 original size:70 final size:68
Alignment explanation
Indices: 125722009--125722157 Score: 201
Period size: 70 Copynumber: 2.2 Consensus size: 68
125721999 AAGTATGCCT
* * * *
125722009 CCTTGAAGGCTATGTTTAAGAAGATGCAGTATGCCTTGAAGGCTAAGTGTT-ATAGAAGACGAAG
1 CCTTGAAGGCTATATTTAAGAAGATGAAGTATGCCTTAAAGGCTAAGTGTTGA-AGAAGACAAAG
125722073 CATG
65 CATG
* *
125722077 CCTTGAAGGCTAAGTATTTGAGAAGATGAAGTTTGCCTTAAAGGCTAAGTGTTGAAGAAGACAAA
1 CCTTGAAGGCT-A-TATTTAAGAAGATGAAGTATGCCTTAAAGGCTAAGTGTTGAAGAAGACAAA
*
125722142 GTATG
64 GCATG
125722147 CCTTGAAGGCT
1 CCTTGAAGGCT
125722158 GTGTCTAAGA
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
68 11 0.15
69 1 0.01
70 58 0.82
71 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.27
Consensus pattern (68 bp):
CCTTGAAGGCTATATTTAAGAAGATGAAGTATGCCTTAAAGGCTAAGTGTTGAAGAAGACAAAGC
ATG
Found at i:125723545 original size:62 final size:58
Alignment explanation
Indices: 125723451--125723628 Score: 191
Period size: 56 Copynumber: 3.0 Consensus size: 58
125723441 TGTGTATATA
* *
125723451 TATTCTTTTGATATATTTGCATGCATCCGTAAGTGAAATTTGCATGTATATATATCTT
1 TATTCTGTTGATAAATTTGCATGCATCCGTAAGTGAAATTTGCATGTATATATATCTT
* * * * *
125723509 TCTATCTGTT-ATAAATTTTGCATCATGCATCTGTAAGTGAAATGTG--TGTATATATATATA
1 TAT-TCTGTTGATAAA-TTTG---CATGCATCCGTAAGTGAAATTTGCATGTATATATATCTT
* * *
125723569 TATTCTTTTGATATATTTGCATGCATCCGTAAGTGAAATTTGCATCTATATATATTCTT
1 TATTCTGTTGATAAATTTGCATGCATCCGTAAGTGAAATTTGCATGTATATATA-TCTT
125723628 T
1 T
125723629 TGATATACTC
Statistics
Matches: 96, Mismatches: 15, Indels: 17
0.75 0.12 0.13
Matches are distributed among these distances:
56 21 0.22
58 15 0.16
59 21 0.22
60 18 0.19
62 21 0.22
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (58 bp):
TATTCTGTTGATAAATTTGCATGCATCCGTAAGTGAAATTTGCATGTATATATATCTT
Found at i:125723593 original size:56 final size:55
Alignment explanation
Indices: 125723445--125723635 Score: 201
Period size: 52 Copynumber: 3.4 Consensus size: 55
125723435 GTGAAATGTG
* *
125723445 TATATATATTCTTTTGATATATTTGCATGCATCCGTAAGTGAAATT-TGCATGTA
1 TATATATATTCTTTTGATATATTTGCATGCATCCGTAAGTGAAATTGTGTATATA
* * * *
125723499 TATATATCTTTCTATCTGTTATAAATTTTGCATCATGCATCTGTAAGTGAAATGTGTGTATATA
1 TATATAT-ATTCT-T-T-TGATATA-TTTG---CATGCATCCGTAAGTGAAAT-TGTGTATATA
* *
125723563 TATATATATTCTTTTGATATATTTGCATGCATCCGTAAGTGAAATT-TG--CATC
1 TATATATATTCTTTTGATATATTTGCATGCATCCGTAAGTGAAATTGTGTATATA
125723615 TATATATATTCTTTTGATATA
1 TATATATATTCTTTTGATATA
125723636 CTCTTTCTAT
Statistics
Matches: 115, Mismatches: 12, Indels: 22
0.77 0.08 0.15
Matches are distributed among these distances:
52 23 0.20
54 9 0.08
55 5 0.04
56 20 0.17
57 1 0.01
58 5 0.04
59 8 0.07
60 5 0.04
61 1 0.01
62 20 0.17
63 5 0.04
64 13 0.11
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (55 bp):
TATATATATTCTTTTGATATATTTGCATGCATCCGTAAGTGAAATTGTGTATATA
Found at i:125723684 original size:29 final size:28
Alignment explanation
Indices: 125723631--125723698 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 28
125723621 TATTCTTTTG
* * *
125723631 ATATAC-TCTTTCTATCTATTTGTGTAT
1 ATATACTTTTTTCTATCTATGTGTGTAC
*
125723658 ATATA-TTTTTTCTATCTGTATGTGTGTGC
1 ATATACTTTTTTCTATC--TATGTGTGTAC
125723687 ATATACTTTTTT
1 ATATACTTTTTT
125723699 TATATAATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
27 14 0.42
29 13 0.39
30 6 0.18
ACGTcount: A:0.21, C:0.12, G:0.10, T:0.57
Consensus pattern (28 bp):
ATATACTTTTTTCTATCTATGTGTGTAC
Found at i:125730607 original size:22 final size:22
Alignment explanation
Indices: 125730579--125730620 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
125730569 GGGAGTGTAA
125730579 GAATATTCTGTAAATATTTTAG
1 GAATATTCTGTAAATATTTTAG
* *
125730601 GAATATTTTGTAGATATTTT
1 GAATATTCTGTAAATATTTT
125730621 TTTTTAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.02, G:0.14, T:0.50
Consensus pattern (22 bp):
GAATATTCTGTAAATATTTTAG
Found at i:125734535 original size:41 final size:41
Alignment explanation
Indices: 125734490--125734618 Score: 213
Period size: 41 Copynumber: 3.1 Consensus size: 41
125734480 GTGGGGCACC
*
125734490 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAGGAG
1 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAAGAG
* *
125734531 GCATACTTGTTTGGTACATTGTTGGTAAAGACTGTGAAGAG
1 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAAGAG
*
125734572 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTAAAGAG
1 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAAGAG
*
125734613 GAATAC
1 GCATAC
125734619 ATAGTTGCTA
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 81 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.30
Consensus pattern (41 bp):
GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAAGAG
Found at i:125736189 original size:22 final size:21
Alignment explanation
Indices: 125736159--125736290 Score: 67
Period size: 23 Copynumber: 5.9 Consensus size: 21
125736149 TTATGTGCAC
125736159 ATATA-TATGTATATATTTAT
1 ATATACTATGTATATATTTAT
*
125736179 ATAGTACTATGGT-TATTTTTAAT
1 ATA-TACTAT-GTATATATTT-AT
*
125736202 ATATA-TATTGTATATGCTTTTCAT
1 ATATACTA-TGTATAT--ATTT-AT
* *
125736226 ATATATTATGTA-AGTATTTTT
1 ATATACTATGTATA-TATTTAT
125736247 AATACTACTAAT-TATATATTTTTAT
1 -ATA-TACT-ATGTATATA--TTTAT
*
125736272 ATATATTATGTATATATTT
1 ATATACTATGTATATATTT
125736291 TTTAATATCA
Statistics
Matches: 88, Mismatches: 7, Indels: 33
0.69 0.05 0.26
Matches are distributed among these distances:
20 3 0.03
21 10 0.11
22 23 0.26
23 24 0.27
24 22 0.25
25 6 0.07
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.55
Consensus pattern (21 bp):
ATATACTATGTATATATTTAT
Found at i:125736266 original size:23 final size:22
Alignment explanation
Indices: 125736192--125736431 Score: 122
Period size: 24 Copynumber: 10.6 Consensus size: 22
125736182 GTACTATGGT
125736192 TATTTTTAATATATATATTGTATA
1 TATTTTTAATATATA-A-TGTATA
* * *
125736216 TGCTTTTCATATATATTATGTA-A
1 T-ATTTTTA-ATATATAATGTATA
125736239 GTATTTTTAATACTACTAAT-TATA
1 -TATTTTTAATA-TA-TAATGTATA
*
125736263 TATTTTTATATATATTATGTATA
1 TATTTTTA-ATATATAATGTATA
*
125736286 TATTTTTTAATATCAT-TTGTTATA
1 TA-TTTTTAATAT-ATAATG-TATA
* *
125736310 TATTTTTTATATTATTTCATGTATA
1 TA-TTTTTA-A-TATATAATGTATA
**
125736335 TATTTTT-ATATTATCCT-TATTA
1 TATTTTTAATA-TATAATGTA-TA
*
125736357 TTATTATTAATAT-T-A-GTATA
1 -TATTTTTAATATATAATGTATA
* *
125736377 T-GTTTTATTATAT-ATGTATA
1 TATTTTTAATATATAATGTATA
* *
125736397 TATCTTTAATATGTAATGTATA
1 TATTTTTAATATATAATGTATA
*
125736419 TATCTTTAATATA
1 TATTTTTAATATA
125736432 CATATAGGTA
Statistics
Matches: 171, Mismatches: 22, Indels: 48
0.71 0.09 0.20
Matches are distributed among these distances:
18 7 0.04
19 3 0.02
20 8 0.05
21 14 0.08
22 33 0.19
23 39 0.23
24 42 0.25
25 14 0.08
26 11 0.06
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.57
Consensus pattern (22 bp):
TATTTTTAATATATAATGTATA
Found at i:125736296 original size:47 final size:47
Alignment explanation
Indices: 125736219--125736341 Score: 137
Period size: 47 Copynumber: 2.6 Consensus size: 47
125736209 TTGTATATGC
*
125736219 TTTTCATATATATTATGTA-AGTA-TTTTTAATA-CTACTAATTATATA
1 TTTTTATATATATTATGTATA-TATTTTTTAATATC-ACTAATTATATA
* **
125736265 TTTTTATATATATTATGTATATATTTTTTAATATCATTTGTTATATA
1 TTTTTATATATATTATGTATATATTTTTTAATATCACTAATTATATA
125736312 TTTTT-TATATTATTTCATGTATATATTTTT
1 TTTTTATATA-TA-TT-ATGTATATATTTTT
125736342 ATATTATCCT
Statistics
Matches: 67, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
46 24 0.36
47 26 0.39
48 3 0.04
49 14 0.21
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (47 bp):
TTTTTATATATATTATGTATATATTTTTTAATATCACTAATTATATA
Found at i:125736653 original size:111 final size:112
Alignment explanation
Indices: 125736515--125736763 Score: 276
Period size: 111 Copynumber: 2.2 Consensus size: 112
125736505 TATGTAAATA
* ** ** *
125736515 TTTTAATATTATATTATATATGCATTTTTTTATATATATTACGTGTATACA-CTTTTTAATATTG
1 TTTTAATATTATATTATGTATATATTTTTTTATATATATTACGTACATA-ATCTTTTTAATATTA
125736579 TA-TTTTT-ATATATATCATGTATATATTTCGAATACTA-TA-TTATATT
65 TATTTTTTAATAT-TATCATGTATATATTT-GAATACTACTAGTTATATT
* * * *
125736625 TTTTACATATTATCTTATGTATATA-TTTTTTATATATGTTATGTACATAATTTTTTTAATATTA
1 TTTTA-ATATTATATTATGTATATATTTTTTTATATATATTACGTACATAATCTTTTTAATATTA
* * *
125736689 TATTTTTTAATATTATTATGTATATATTTTAATATTACTAGTTATATT
65 TATTTTTTAATATTATCATGTATATATTTGAATACTACTAGTTATATT
* * *
125736737 TTTTTATACTATTTTATGTATATATTT
1 TTTTAATATTATATTATGTATATATTT
125736764 CAAACAGTAT
Statistics
Matches: 116, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
109 1 0.01
110 44 0.38
111 54 0.47
112 17 0.15
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (112 bp):
TTTTAATATTATATTATGTATATATTTTTTTATATATATTACGTACATAATCTTTTTAATATTAT
ATTTTTTAATATTATCATGTATATATTTGAATACTACTAGTTATATT
Found at i:125736659 original size:25 final size:26
Alignment explanation
Indices: 125736619--125736689 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 26
125736609 AATACTATAT
125736619 TATATTTTTTACATATTATCTTATGTA
1 TATATTTTTTA-ATATTATCTTATGTA
*
125736646 TATATTTTTT-ATA-TATGTTATGTA
1 TATATTTTTTAATATTATCTTATGTA
*
125736670 CATAATTTTTTTAATATTAT
1 TAT-A-TTTTTTAATATTAT
125736690 ATTTTTTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
24 12 0.32
25 4 0.11
26 6 0.16
27 13 0.34
28 3 0.08
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (26 bp):
TATATTTTTTAATATTATCTTATGTA
Found at i:125736669 original size:70 final size:65
Alignment explanation
Indices: 125736581--125736718 Score: 161
Period size: 70 Copynumber: 2.0 Consensus size: 65
125736571 TAATATTGTA
*
125736581 TTTTTATATATATCATGTATAT-ATTTCGAATACTATATTATATTTTTTACATATTATCTTATGT
1 TTTTTATATATATCATGTACATAATTT-GAATA--ATATTATATTTTTTA-ATATTA--TTATGT
125736645 ATATAT
60 ATATAT
* * ***
125736651 TTTTTATATATGTTATGTACATAATTTTTTTAATATTATATTTTTTAATATTATTATGTATATAT
1 TTTTTATATATATCATGTACATAATTTGAATAATATTATATTTTTTAATATTATTATGTATATAT
125736716 TTT
1 TTT
125736719 AATATTACTA
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
65 15 0.25
67 6 0.10
68 15 0.25
70 21 0.34
71 4 0.07
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.59
Consensus pattern (65 bp):
TTTTTATATATATCATGTACATAATTTGAATAATATTATATTTTTTAATATTATTATGTATATAT
Found at i:125736691 original size:41 final size:43
Alignment explanation
Indices: 125736646--125736763 Score: 118
Period size: 41 Copynumber: 2.7 Consensus size: 43
125736636 ATCTTATGTA
*
125736646 TATATTTTTTATATATGTTATGTACATAATTTT-T-TTAATA-T
1 TATATTTTTTATATATATTATGTACAT-ATTTTATATTAATAGT
* *
125736687 TATATTTTTTA-ATATTATTATGTATATATTTTAATATTACTAGT
1 TATATTTTTTATATA-TATTATGTACATATTTT-ATATTAATAGT
* *
125736731 TATATTTTTTTATACTATTTTATGTATATATTT
1 TATA-TTTTTTATA-TATATTATGTACATATTT
125736764 CAAACAGTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
40 8 0.12
41 21 0.32
42 1 0.02
43 5 0.08
44 5 0.08
45 7 0.11
46 16 0.25
47 2 0.03
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (43 bp):
TATATTTTTTATATATATTATGTACATATTTTATATTAATAGT
Found at i:125736696 original size:15 final size:15
Alignment explanation
Indices: 125736676--125736704 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
125736666 TGTACATAAT
125736676 TTTTTTAATATTATA
1 TTTTTTAATATTATA
125736691 TTTTTTAATATTAT
1 TTTTTTAATATTAT
125736705 TATGTATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTTTAATATTATA
Found at i:125736736 original size:20 final size:22
Alignment explanation
Indices: 125736595--125736738 Score: 79
Period size: 21 Copynumber: 6.6 Consensus size: 22
125736585 TATATATATC
* *
125736595 ATGTATATATTTCGAATACTA-T
1 ATGTATATATTT-TAATATTACT
*
125736617 AT-TATATTTTTTACATATTATCTT
1 ATGTATATATTTTA-ATATTA-C-T
* **
125736641 ATGTATATATTTTTTATATATGTT
1 ATGTATATA-TTTTAATAT-TACT
* *
125736665 ATGTACATAATTTT--T-TTAAT
1 ATGTATAT-ATTTTAATATTACT
* *
125736685 AT-TATATTTTTTAATATTATT
1 ATGTATATATTTTAATATTACT
125736706 ATGTATATATTTTAATATTACT
1 ATGTATATATTTTAATATTACT
125736728 A-GT-TATATTTT
1 ATGTATATATTTT
125736739 TTTATACTAT
Statistics
Matches: 95, Mismatches: 15, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
18 4 0.04
19 4 0.04
20 14 0.15
21 22 0.23
22 21 0.22
24 15 0.16
25 10 0.11
26 5 0.05
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.58
Consensus pattern (22 bp):
ATGTATATATTTTAATATTACT
Found at i:125736924 original size:15 final size:16
Alignment explanation
Indices: 125736900--125736944 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
125736890 TTAATAGTTG
125736900 TCTTTAATATTAT-TA
1 TCTTTAATATTATATA
125736915 T-TTCTAATATGTATATA
1 TCTT-TAATAT-TATATA
125736932 TCTTTAATATTAT
1 TCTTTAATATTAT
125736945 GTATATACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 2 0.08
15 7 0.27
16 6 0.23
17 9 0.35
18 2 0.08
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (16 bp):
TCTTTAATATTATATA
Found at i:125740954 original size:22 final size:22
Alignment explanation
Indices: 125740929--125740972 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
125740919 TCATGACTAA
125740929 CATTCATTCGTCATTTATTCAT
1 CATTCATTCGTCATTTATTCAT
*
125740951 CATTCATTTGTCATTTATTCAT
1 CATTCATTCGTCATTTATTCAT
125740973 TCATCTATTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.20, G:0.05, T:0.52
Consensus pattern (22 bp):
CATTCATTCGTCATTTATTCAT
Found at i:125743224 original size:223 final size:223
Alignment explanation
Indices: 125742836--125743282 Score: 867
Period size: 223 Copynumber: 2.0 Consensus size: 223
125742826 TTCTACCATT
*
125742836 CTTATTAAGTTAGGAGACGAGACGTAGTCTTCAACATTTTCCTCAGCTTCGAACACTCCTAAACA
1 CTTATTAAGTTAGGAGACGAGACGTAGCCTTCAACATTTTCCTCAGCTTCGAACACTCCTAAACA
125742901 AATAGTTATCTCGAAATCGATTTCAAGATTTGTAACGGGTTTGTTCATATCGTTGATATCTGAGC
66 AATAGTTATCTCGAAATCGATTTCAAGATTTGTAACGGGTTTGTTCATATCGTTGATATCTGAGC
125742966 ACTTGAAAGTTGAATGGAAAAGAAAACTATAGAGGAGCATCAAAGTATTGGGACCAACAAGCACA
131 ACTTGAAAGTTGAATGGAAAAGAAAACTATAGAGGAGCATCAAAGTATTGGGACCAACAAGCACA
125743031 ATGGCATGATGTGAAATATATGCAATGA
196 ATGGCATGATGTGAAATATATGCAATGA
*
125743059 CTTATTAAGTTAGGAGACGAGACGTAGCCTTCAACATTTTCCTCAGCTTCGAACACTCCTGAACA
1 CTTATTAAGTTAGGAGACGAGACGTAGCCTTCAACATTTTCCTCAGCTTCGAACACTCCTAAACA
*
125743124 AATAGTTATCTCGAAATCGATTTCAAGATTTGTAACGGGTTTGTTCATATCGTTGATATCTGATC
66 AATAGTTATCTCGAAATCGATTTCAAGATTTGTAACGGGTTTGTTCATATCGTTGATATCTGAGC
125743189 ACTTGAAAGTTGAATGGAAAAGAAAACTATAGAGGAGCATCAAAGTATTGGGACCAACAAGCACA
131 ACTTGAAAGTTGAATGGAAAAGAAAACTATAGAGGAGCATCAAAGTATTGGGACCAACAAGCACA
125743254 ATGGCATGATGTGAAATATATGCAATGA
196 ATGGCATGATGTGAAATATATGCAATGA
125743282 C
1 C
125743283 AGGCTGTGAG
Statistics
Matches: 221, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
223 221 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (223 bp):
CTTATTAAGTTAGGAGACGAGACGTAGCCTTCAACATTTTCCTCAGCTTCGAACACTCCTAAACA
AATAGTTATCTCGAAATCGATTTCAAGATTTGTAACGGGTTTGTTCATATCGTTGATATCTGAGC
ACTTGAAAGTTGAATGGAAAAGAAAACTATAGAGGAGCATCAAAGTATTGGGACCAACAAGCACA
ATGGCATGATGTGAAATATATGCAATGA
Found at i:125747202 original size:22 final size:22
Alignment explanation
Indices: 125747175--125747216 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
125747165 AATGGATGAA
125747175 TGAATAAATGACAAATGAATAT
1 TGAATAAATGACAAATGAATAT
*
125747197 TGAATAAATGACGAATGAAT
1 TGAATAAATGACAAATGAAT
125747217 GTTAGTCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.05, G:0.17, T:0.26
Consensus pattern (22 bp):
TGAATAAATGACAAATGAATAT
Found at i:125755447 original size:90 final size:88
Alignment explanation
Indices: 125755292--125755595 Score: 323
Period size: 90 Copynumber: 3.4 Consensus size: 88
125755282 CGCTGAGGAA
* * *
125755292 TTTTCAATTTATGGTTTT-TAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGTTCAC
1 TTTTCAATTTAT-GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GCAC
125755356 ATGCCAAGGCATTTTTAAATTTTGT
64 ATGCCAAGGCATTTTTAAATTTTGT
* **
125755381 TTTTCAATTTATGTTTTCCAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGTTTCGGGCCAC
1 TTTTCAATTTATGTTTT-CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CAC
* * *
125755446 ATGCCAAGGTC-TTTTCAAATTGTAT
64 ATGCCAAGG-CATTTTTAAATTTTGT
*
125755471 TTTT-AATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-A
1 TTTTCAATTTATG-TTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCA
* ** * * *
125755534 CACGCTGAGGTA-TTTTCAATTTCTGC
63 CATGCCAAGGCATTTTTAAATTT-TGT
*
125755560 GTTTCAATTTATGTGTTTC-AAAAATCAACTCATATT
1 TTTTCAATTTATGT-TTTCAAAAAATCAACTCATATT
125755596 CTCGGGTCAC
Statistics
Matches: 180, Mismatches: 24, Indels: 24
0.79 0.11 0.11
Matches are distributed among these distances:
87 17 0.09
88 12 0.07
89 33 0.18
90 78 0.43
91 40 0.22
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (88 bp):
TTTTCAATTTATGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACAT
GCCAAGGCATTTTTAAATTTTGT
Found at i:125755566 original size:14 final size:14
Alignment explanation
Indices: 125755547--125755580 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
125755537 GCTGAGGTAT
*
125755547 TTTCAATTTCTGCG
1 TTTCAATTTATGCG
*
125755561 TTTCAATTTATGTG
1 TTTCAATTTATGCG
125755575 TTTCAA
1 TTTCAA
125755581 AAATCAACTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.21, C:0.15, G:0.12, T:0.53
Consensus pattern (14 bp):
TTTCAATTTATGCG
Found at i:125756794 original size:19 final size:19
Alignment explanation
Indices: 125756748--125756792 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
125756738 TTATACATAT
* *
125756748 ATAATAAATAAAAAGGAAA
1 ATAAAAAATAAAAAGAAAA
125756767 ATAAAAAAT-AAAAGAAAA
1 ATAAAAAATAAAAAGAAAA
125756785 ATAAAAAA
1 ATAAAAAA
125756793 ATTTACCTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (19 bp):
ATAAAAAATAAAAAGAAAA
Found at i:125757574 original size:23 final size:22
Alignment explanation
Indices: 125757470--125758223 Score: 185
Period size: 23 Copynumber: 32.7 Consensus size: 22
125757460 GCAAATATAT
125757470 ATATATATATGTATATATTTATATA
1 ATATAT-TATGTATATATTT-T-TA
* *
125757495 GTACTATTAATG-GT-TATTTTTA
1 ATA-TATT-ATGTATATATTTTTA
* *
125757517 ATATATGTATATTGTATATGCTTTTCA
1 ATATA--T-TA-TGTATAT-ATTTTTA
125757544 TATATATTATGTA-AGTATTTTTA
1 -ATATATTATGTATA-TATTTTTA
125757567 ATACTATTAAT-TATATATTTTTA
1 ATA-TATT-ATGTATATATTTTTA
125757590 TATATATTATGTATATATTTTTAA
1 -ATATATTATGTATATATTTTT-A
*
125757614 ATATCCTCCTAT-TCATATATTTTTA
1 ATAT-AT--TATGT-ATATATTTTTA
* *
125757639 TGTTATCTTATGTATATATATTTTA
1 --ATATATTATGTATATAT-TTTTA
*
125757664 ATATCATTA-GTTATATATTTTTT
1 ATAT-ATTATG-TATATATTTTTA
*
125757687 ATACTATTTCATGTATGTATTTTTA
1 ATA-TA-TT-ATGTATATATTTTTA
* *
125757712 TATTATCCTTAT-TAT-TATTATTA
1 -A-TAT-ATTATGTATATATTTTTA
* *
125757735 TTAATATTA-GTATAT-GTTTTA
1 AT-ATATTATGTATATATTTTTA
* *
125757756 TTATA-TATGTATATATCTTTGA
1 ATATATTATGTATATAT-TTTTA
* *
125757778 TATACATATAGGTATATATTTATGTA
1 -ATATAT-TATGTATATATTT-T-TA
125757804 ATATTATTAATAGGTAT-T-TTTTTA
1 ATA-TATT-AT--GTATATATTTTTA
* * * * *
125757828 ACATCATTATTTCTA-ATATGT-
1 ATAT-ATTATGTATATATTTTTA
*
125757849 ATATATTATGTAAATATTTTAATA
1 ATATATTATGTATATATTTT--TA
* * *
125757873 TTATATTATATATGTATTTTTTA
1 ATATATTATGTATATA-TTTTTA
*
125757896 TATATATTACGTGTATACACTTTTT-
1 -ATATATTA--TGTATATA-TTTTTA
*
125757921 A-ATA-T-TGTAT-T-TTTAT-
1 ATATATTATGTATATATTTTTA
* *
125757937 ATATATCATGTATATATTTTGA
1 ATATATTATGTATATATTTTTA
125757959 ATACTA-TAT-TATAT-TTTTTA
1 ATA-TATTATGTATATATTTTTA
125757979 CATATTATCTTATGTATATATTTTTTA
1 -ATA-TA--TTATGTATATA-TTTTTA
* *
125758006 TATATGTTATGTACATAATTTTT-
1 -ATATATTATGTATAT-ATTTTTA
*
125758029 -T-TAATAT-TATAT-TTTTTA
1 ATATATTATGTATATATTTTTA
125758047 TAT-TATTATGTATATA-TTTTA
1 -ATATATTATGTATATATTTTTA
*
125758068 ATATTACTA-GT-TATATTTTTTA
1 ATA-TATTATGTATATA-TTTTTA
* **
125758090 TACTATTTTATGTATATATTTCAA
1 -A-TATATTATGTATATATTTTTA
* *
125758114 ACACTATATAT-TATATATTTCTA
1 ATA-TAT-TATGTATATATTTTTA
* * * * *
125758137 ATACCATTA-CTATTTATATATA
1 ATA-TATTATGTATATATTTTTA
** * *
125758159 TATATATTATGTACGTACTTGTAA
1 -ATATATTATGTATATA-TTTTTA
125758183 CATCATTATTATGTATATATTTTTA
1 -AT-A-TATTATGTATATATTTTTA
125758208 ATATATATATGTATAT
1 ATATAT-TATGTATAT
125758224 TTATGTAGTA
Statistics
Matches: 542, Mismatches: 90, Indels: 196
0.65 0.11 0.24
Matches are distributed among these distances:
16 5 0.01
17 8 0.01
19 16 0.03
20 38 0.07
21 49 0.09
22 53 0.10
23 115 0.21
24 109 0.20
25 63 0.12
26 57 0.11
27 20 0.04
28 9 0.02
ACGTcount: A:0.34, C:0.05, G:0.06, T:0.55
Consensus pattern (22 bp):
ATATATTATGTATATATTTTTA
Found at i:125757611 original size:24 final size:23
Alignment explanation
Indices: 125757467--125757904 Score: 171
Period size: 24 Copynumber: 18.5 Consensus size: 23
125757457 TGTGCAAATA
*
125757467 TATATATATATATGTATATATTTA
1 TATATATAT-TATGTATATATTTT
125757491 TATAGTACTATTAATGGT-TAT-TTTT
1 TATA-TA-TATT-AT-GTATATATTTT
* * *
125757516 AATATATGTATATTGTATATGCTTTT
1 TATATATAT-TA-TGTATAT-ATTTT
*
125757542 CATATATATTATGTA-AGTATTTT
1 TATATATATTATGTATA-TATTTT
125757565 TA-ATACTATTAAT-TATATATTTT
1 TATATA-TATT-ATGTATATATTTT
125757588 TATATATATTATGTATATATTTT
1 TATATATATTATGTATATATTTT
* *
125757611 TAAATATCCTCCTAT-TCATATATTTT
1 TATATAT-AT--TATGT-ATATATTTT
* *
125757637 TATGTTATCTTATGTATATATATTT
1 TAT-ATATATTATGTATATAT-TTT
125757662 TA-ATATCATTA-GTTATATATTTT
1 TATATAT-ATTATG-TATATATTTT
*
125757685 T-TATACTATTTCATGTATGTATTTT
1 TATATA-TA-TT-ATGTATATATTTT
* *
125757710 TATATTATCCTTAT-TAT-TATTAT
1 TATA-TAT-ATTATGTATATATTTT
*
125757733 TAT-TAATATTA-GTATAT-GTTT
1 TATAT-ATATTATGTATATATTTT
125757754 TAT-TATA-TATGTATATATCTTT
1 TATATATATTATGTATATAT-TTT
* * * *
125757776 GATATACATATAGGTATATATTTA
1 TATATATAT-TATGTATATATTTT
*
125757800 TGTA-ATATTAT-TAATAGGTATTTT
1 TATATATATTATGT-ATA--TATTTT
* * * * *
125757824 TTTAACATCATTAT-T-TCTA-ATA
1 TAT-ATAT-ATTATGTATATATTTT
* *
125757846 TGTATATATTATGTAAATATTTT
1 TATATATATTATGTATATATTTT
* * *
125757869 AATATTATATTATATATGTATTTTT
1 TATA-TATATTATGTATATA-TTTT
125757894 TATATATATTA
1 TATATATATTA
125757905 CGTGTATACA
Statistics
Matches: 317, Mismatches: 45, Indels: 104
0.68 0.10 0.22
Matches are distributed among these distances:
19 2 0.01
20 14 0.04
21 18 0.06
22 23 0.07
23 76 0.24
24 78 0.25
25 50 0.16
26 43 0.14
27 13 0.04
ACGTcount: A:0.34, C:0.05, G:0.06, T:0.55
Consensus pattern (23 bp):
TATATATATTATGTATATATTTT
Found at i:125757867 original size:28 final size:28
Alignment explanation
Indices: 125757835--125757888 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
125757825 TTAACATCAT
125757835 TATTTCTAATATGTATA-TAT-TATGTAAA
1 TATTT-TAATAT-TATATTATATATGTAAA
125757863 TATTTTAATATTATATTATATATGTA
1 TATTTTAATATTATATTATATATGTA
125757889 TTTTTTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 4 0.17
27 9 0.38
28 11 0.46
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.54
Consensus pattern (28 bp):
TATTTTAATATTATATTATATATGTAAA
Found at i:125758001 original size:110 final size:110
Alignment explanation
Indices: 125757865--125758110 Score: 304
Period size: 110 Copynumber: 2.2 Consensus size: 110
125757855 TATGTAAATA
* * ** *
125757865 TTTTAATATTATATTATATATGTATTTTTTATATATATTACGTGTATACA-CTTTTTAATATTGT
1 TTTTAATATTATATTATGTATATATTTTTTATATATATTACGTACATA-ATCTTTTTAATATTAT
125757929 A-TTTTTATATATATCATGTATATATTTTGAATACTA-TA-TTATATT
65 ATTTTTTATAT-TATCATGTATATATTTT-AATACTACTAGTTATATT
* * * *
125757974 TTTTACATATTATCTTATGTATATATTTTTTATATATGTTATGTACATAATTTTTTTAATATTAT
1 TTTTA-ATATTATATTATGTATATATTTTTTATATATATTACGTACATAATCTTTTTAATATTAT
* *
125758039 ATTTTTTATATTATTATGTATATATTTTAATATTACTAGTTATATT
65 ATTTTTTATATTATCATGTATATATTTTAATACTACTAGTTATATT
* *
125758085 TTTT-ATACTATTTTATGTATATATTT
1 TTTTAATATTATATTATGTATATATTT
125758111 CAAACACTAT
Statistics
Matches: 119, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
109 32 0.27
110 67 0.56
111 20 0.17
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (110 bp):
TTTTAATATTATATTATGTATATATTTTTTATATATATTACGTACATAATCTTTTTAATATTATA
TTTTTTATATTATCATGTATATATTTTAATACTACTAGTTATATT
Found at i:125758004 original size:70 final size:64
Alignment explanation
Indices: 125757930--125758066 Score: 159
Period size: 70 Copynumber: 2.0 Consensus size: 64
125757920 TAATATTGTA
*
125757930 TTTTTATATATATCATGTATAT-ATTTTGAATACTATATTATATTTTTTACATATTATCTTATGT
1 TTTTTATATATATCATGTACATAATTTT-AATA--ATATTATATTTTTT--ATATTA--TTATGT
125757994 ATATAT
59 ATATAT
* * **
125758000 TTTTTATATATGTTATGTACATAATTTTTTTAATATTATATTTTTTATATTATTATGTATATAT
1 TTTTTATATATATCATGTACATAATTTTAATAATATTATATTTTTTATATTATTATGTATATAT
125758064 TTT
1 TTT
125758067 AATATTACTA
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
64 15 0.25
66 6 0.10
68 14 0.23
70 21 0.34
71 5 0.08
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (64 bp):
TTTTTATATATATCATGTACATAATTTTAATAATATTATATTTTTTATATTATTATGTATATAT
Found at i:125758008 original size:25 final size:26
Alignment explanation
Indices: 125757968--125758038 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 26
125757958 AATACTATAT
125757968 TATATTTTTTACATATTATCTTATGTA
1 TATATTTTTTA-ATATTATCTTATGTA
*
125757995 TATATTTTTT-ATA-TATGTTATGTA
1 TATATTTTTTAATATTATCTTATGTA
*
125758019 CATAATTTTTTTAATATTAT
1 TAT-A-TTTTTTAATATTAT
125758039 ATTTTTTATA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
24 12 0.32
25 4 0.11
26 6 0.16
27 13 0.34
28 3 0.08
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (26 bp):
TATATTTTTTAATATTATCTTATGTA
Found at i:125758106 original size:43 final size:38
Alignment explanation
Indices: 125757995--125758106 Score: 100
Period size: 43 Copynumber: 2.7 Consensus size: 38
125757985 ATCTTATGTA
*
125757995 TATATTTTTTATATATGTTATGTACATAATTTTTTTAATAT
1 TATATTTTTTATATATTTTATGT--AT-ATTTTTTTAATAT
* *
125758036 TATATTTTTTATAT-TATTATGTATATATTTTAATATTACTAGT
1 TATATTTTTTATATATTTTATG--TATATTTT--T-TTAATA-T
125758079 TATATTTTTTATACTATTTTATGTATAT
1 TATATTTTTTATA-TATTTTATGTATAT
125758107 ATTTCAAACA
Statistics
Matches: 60, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
39 5 0.08
40 8 0.13
41 15 0.25
42 6 0.10
43 19 0.32
44 1 0.02
45 6 0.10
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (38 bp):
TATATTTTTTATATATTTTATGTATATTTTTTTAATAT
Found at i:125758294 original size:20 final size:21
Alignment explanation
Indices: 125758269--125758312 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
125758259 TTATTTCTAA
125758269 TATGTATATA-TCTT-TAATAC
1 TATGTATATACT-TTGTAATAC
125758289 TATGTATATACTTTGTAATAC
1 TATGTATATACTTTGTAATAC
125758310 TAT
1 TAT
125758313 TATTATGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (21 bp):
TATGTATATACTTTGTAATAC
Found at i:125759380 original size:18 final size:17
Alignment explanation
Indices: 125759353--125759388 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
125759343 CCCTCCCCTC
125759353 TCCCCTCTCTCCTTTCT
1 TCCCCTCTCTCCTTTCT
*
125759370 TCCCTCTCTCTCTTTTCT
1 TCCC-CTCTCTCCTTTCT
125759388 T
1 T
125759389 TTTTTTTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (17 bp):
TCCCCTCTCTCCTTTCT
Found at i:125759870 original size:3 final size:3
Alignment explanation
Indices: 125759862--125759911 Score: 91
Period size: 3 Copynumber: 16.3 Consensus size: 3
125759852 TGTATTTCCA
125759862 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
125759908 TAT T
1 TAT T
125759912 GTATATTTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 43 0.93
4 3 0.07
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:125765316 original size:53 final size:52
Alignment explanation
Indices: 125765182--125765317 Score: 159
Period size: 52 Copynumber: 2.6 Consensus size: 52
125765172 ATATATATAC
*
125765182 TTCCGTATAAGACCATAGTC-GGGCTATGGCATCTGTACAATGTGATTCATGT
1 TTCCGTATAAGACCATA-TCTGGGCTATGGCATCTGTACAATGTGATTAATGT
* * ***
125765234 TCCCGTATAAGACCATAGCTGGGCTATGGCATCTGTGTGATGTGA-TAATGT
1 TTCCGTATAAGACCATATCTGGGCTATGGCATCTGTACAATGTGATTAATGT
* *
125765285 GATTCCGTATAAGACCATATCTGAGATATGGCA
1 --TTCCGTATAAGACCATATCTGGGCTATGGCA
125765318 CCAGTATGAT
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
51 6 0.08
52 38 0.54
53 27 0.38
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (52 bp):
TTCCGTATAAGACCATATCTGGGCTATGGCATCTGTACAATGTGATTAATGT
Found at i:125765908 original size:17 final size:21
Alignment explanation
Indices: 125765866--125765908 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
125765856 GATTGGAAAA
125765866 TGAAATATACTTGTTTTGGCT
1 TGAAATATACTTGTTTTGGCT
125765887 TGAAATA-A-TTG-TTTGG-T
1 TGAAATATACTTGTTTTGGCT
125765904 TGAAA
1 TGAAA
125765909 ATTTTTAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.27
18 5 0.23
19 3 0.14
20 1 0.05
21 7 0.32
ACGTcount: A:0.30, C:0.05, G:0.21, T:0.44
Consensus pattern (21 bp):
TGAAATATACTTGTTTTGGCT
Found at i:125765910 original size:18 final size:20
Alignment explanation
Indices: 125765866--125765910 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 20
125765856 GATTGGAAAA
*
125765866 TGAAATATACTTGTTTTGGCT
1 TGAAA-ATAATTGTTTTGGCT
125765887 TG-AAATAATTG-TTTGG-T
1 TGAAAATAATTGTTTTGGCT
125765904 TGAAAAT
1 TGAAAAT
125765911 TTTTAGGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
17 3 0.14
18 9 0.41
19 6 0.27
20 2 0.09
21 2 0.09
ACGTcount: A:0.31, C:0.04, G:0.20, T:0.44
Consensus pattern (20 bp):
TGAAAATAATTGTTTTGGCT
Found at i:125767674 original size:29 final size:29
Alignment explanation
Indices: 125767572--125767673 Score: 125
Period size: 29 Copynumber: 3.5 Consensus size: 29
125767562 GTGACGAGAT
125767572 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
125767601 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
125767630 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
125767659 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
125767674 GGGTTTAAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 61 0.98
30 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:125767730 original size:28 final size:28
Alignment explanation
Indices: 125767661--125767761 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
125767651 GAAGGGTATG
* * * *
125767661 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
125767691 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
125767719 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
125767748 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
125767762 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:125775588 original size:29 final size:29
Alignment explanation
Indices: 125775486--125775587 Score: 125
Period size: 29 Copynumber: 3.5 Consensus size: 29
125775476 GTGACGAGAT
125775486 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
125775515 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
125775544 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
125775573 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
125775588 GGGTTTAAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 61 0.98
30 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:125775644 original size:28 final size:28
Alignment explanation
Indices: 125775575--125775675 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
125775565 GAAGGGTATG
* * * *
125775575 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
125775605 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
125775633 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
125775662 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
125775676 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:125777230 original size:20 final size:19
Alignment explanation
Indices: 125777180--125777233 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 19
125777170 CACGGCTGCA
* *
125777180 GCACACGGGCATGTTCCAG
1 GCACACGGGCGTGTCCCAG
125777199 GCCACACGGGCGTGTCCCAAG
1 G-CACACGGGCGTGTCCC-AG
125777220 GCACACGGGCGTGT
1 GCACACGGGCGTGT
125777234 GCCCCTATCT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
19 1 0.03
20 27 0.87
21 3 0.10
ACGTcount: A:0.19, C:0.33, G:0.35, T:0.13
Consensus pattern (19 bp):
GCACACGGGCGTGTCCCAG
Found at i:125778133 original size:18 final size:18
Alignment explanation
Indices: 125778083--125778124 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
125778073 ACAGCTTGTA
125778083 TGCATGCTGCAGCAATTG
1 TGCATGCTGCAGCAATTG
125778101 TGCATGCTGCAGCAATTG
1 TGCATGCTGCAGCAATTG
125778119 TGCATG
1 TGCATG
125778125 TTTTAGCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (18 bp):
TGCATGCTGCAGCAATTG
Found at i:125791837 original size:13 final size:14
Alignment explanation
Indices: 125791816--125791848 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
125791806 TTTATTAATG
125791816 AAATATATTAAA-AT
1 AAAT-TATTAAATAT
125791830 AAATTATTAAATAT
1 AAATTATTAAATAT
125791844 AAATT
1 AAATT
125791849 TATATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AAATTATTAAATAT
Found at i:125792979 original size:22 final size:22
Alignment explanation
Indices: 125792949--125792993 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
125792939 ATTGTATGAT
*
125792949 TTATGAAT-GCATGACAATTGCA
1 TTATGAATGGCATGA-AAATGCA
*
125792971 TTATTAATGGCATGAAAATGCA
1 TTATGAATGGCATGAAAATGCA
125792993 T
1 T
125792994 GAAATGCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.33
Consensus pattern (22 bp):
TTATGAATGGCATGAAAATGCA
Found at i:125796776 original size:30 final size:29
Alignment explanation
Indices: 125796735--125796798 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
125796725 ATGAATCGGA
*
125796735 AGCTTTAGCACTAAGTGTGCGATTTAAACT
1 AGCTTTAGCACTAAGTGTGCAATTT-AACT
*
125796765 AGCTTTGGCACTAAGTGTGCAATTTAACT
1 AGCTTTAGCACTAAGTGTGCAATTTAACT
125796794 AGCTT
1 AGCTT
125796799 CGGCTACTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.28
30 23 0.72
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (29 bp):
AGCTTTAGCACTAAGTGTGCAATTTAACT
Found at i:125805836 original size:136 final size:136
Alignment explanation
Indices: 125805592--125805860 Score: 439
Period size: 136 Copynumber: 2.0 Consensus size: 136
125805582 TCTTTTCAAG
* *
125805592 CTTGAAAGTAAGTCAATCTTAGCCCTATTTTTAATGTTCTTTATGTTTTTGAGATCTTTGAAGCA
1 CTTGAAAGTAAGTCAATCCTAGCCCCATTTTTAATGTTCTTTATGTTTTTGAGATCTTTGAAGCA
* *
125805657 TGATCTAACTATTTATACCATTATTTTGAGCTAGGGTTCATGTTCAAACACTTACCCATGTGTGA
66 TGATCTAACTATTTATACCATTATTTTGAGCTAGGGTTCATGTTAAAACACTTAACCATGTGTGA
125805722 CATGCA
131 CATGCA
* *
125805728 CTTGAAAGTAAGTTAATCCTAGCCCCGTTTTTAATGTTCTTTATGTTTTTGAGATCTTTGAAGCA
1 CTTGAAAGTAAGTCAATCCTAGCCCCATTTTTAATGTTCTTTATGTTTTTGAGATCTTTGAAGCA
** * **
125805793 TGATCTAGTTATTTATACCATTATTTTGAGCTAGGGTTCATGTTAAAATACTTAACTGTGTGTGA
66 TGATCTAACTATTTATACCATTATTTTGAGCTAGGGTTCATGTTAAAACACTTAACCATGTGTGA
125805858 CAT
131 CAT
125805861 ACAAGTATTT
Statistics
Matches: 122, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
136 122 1.00
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (136 bp):
CTTGAAAGTAAGTCAATCCTAGCCCCATTTTTAATGTTCTTTATGTTTTTGAGATCTTTGAAGCA
TGATCTAACTATTTATACCATTATTTTGAGCTAGGGTTCATGTTAAAACACTTAACCATGTGTGA
CATGCA
Found at i:125812489 original size:15 final size:15
Alignment explanation
Indices: 125812469--125812499 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
125812459 AACGGGACAG
125812469 AAAAAGAAAGGAGAA
1 AAAAAGAAAGGAGAA
*
125812484 AAAAAGAGAGGAGAA
1 AAAAAGAAAGGAGAA
125812499 A
1 A
125812500 TTAAGGTTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAGGAGAA
Found at i:125815044 original size:106 final size:106
Alignment explanation
Indices: 125814859--125815082 Score: 317
Period size: 106 Copynumber: 2.1 Consensus size: 106
125814849 ACGGGCAGTG
* * **
125814859 ACACAGGCGTGTGTCTCAACCGTGTGTGACACAAGGTCATGTTGCACTACCATGTGTCCCCTGGG
1 ACACAGGCGTGTGTCTCAACCGTGTGCGACACAAGGTCATATTGCAAGACCATGTGTCCCCTGGG
*
125814924 GTACCCTACGATTTTAAGTCAGCCTTGAACACGGCCAAGGC
66 GTACCCTACGATTTTAAATCAGCCTTGAACACGGCCAAGGC
* * * * * *
125814965 ACACAGGCGTGTGTCTCAGCTGTGTGCGATACATGGTCATATTGCAAGGCCGTGTGTCCCCTGGG
1 ACACAGGCGTGTGTCTCAACCGTGTGCGACACAAGGTCATATTGCAAGACCATGTGTCCCCTGGG
* *
125815030 GTACCCTACGATTTTAAATCAGTCTTGAACACGGCTAAGGC
66 GTACCCTACGATTTTAAATCAGCCTTGAACACGGCCAAGGC
125815071 ACAC-GG-GTGTGT
1 ACACAGGCGTGTGT
125815083 GGCTAGCCGT
Statistics
Matches: 105, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
104 6 0.06
105 2 0.02
106 97 0.92
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (106 bp):
ACACAGGCGTGTGTCTCAACCGTGTGCGACACAAGGTCATATTGCAAGACCATGTGTCCCCTGGG
GTACCCTACGATTTTAAATCAGCCTTGAACACGGCCAAGGC
Found at i:125821488 original size:44 final size:44
Alignment explanation
Indices: 125821390--125821519 Score: 126
Period size: 44 Copynumber: 3.0 Consensus size: 44
125821380 ACATAGGATC
* * * * *
125821390 CGATATGTG-TTTTCGTGTAAGACCATGCCTGGGACATTGGCAT
1 CGATATATGATTTACGTGTAAGACCCTGTCTGGGACAGTGGCAT
125821433 CGACT-TATGATTTACGTGTAAGACCCTGTCTGGGACAGTGGCAT
1 CGA-TATATGATTTACGTGTAAGACCCTGTCTGGGACAGTGGCAT
* * *
125821477 CGATATTTGA-TTACATGTAATACCAC-GTCTGGGAC-GCTGGCAT
1 CGATATATGATTTACGTGTAAGACC-CTGTCTGGGACAG-TGGCAT
125821520 TGTACGAGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
42 1 0.01
43 34 0.46
44 39 0.53
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (44 bp):
CGATATATGATTTACGTGTAAGACCCTGTCTGGGACAGTGGCAT
Found at i:125823428 original size:16 final size:17
Alignment explanation
Indices: 125823396--125823428 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
125823386 TGGATTTATA
125823396 TGAAATAGTGAATATTG
1 TGAAATAGTGAATATTG
*
125823413 TGAAAT-GTGGATATTG
1 TGAAATAGTGAATATTG
125823429 AATATTGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.36, C:0.00, G:0.27, T:0.36
Consensus pattern (17 bp):
TGAAATAGTGAATATTG
Found at i:125829132 original size:39 final size:39
Alignment explanation
Indices: 125829089--125829174 Score: 136
Period size: 39 Copynumber: 2.2 Consensus size: 39
125829079 TTTAGTAATT
* * *
125829089 TTAGTTTGTGTCTTTAATTATGTCATAGTTTGAACATCA
1 TTAGTATGAGTCTTTAATTATGTCATAGTATGAACATCA
125829128 TTAGTATGAGTCTTTAATTATGTCATAGTATGAACATCA
1 TTAGTATGAGTCTTTAATTATGTCATAGTATGAACATCA
*
125829167 TTAATATG
1 TTAGTATG
125829175 TGTTTTGCAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.30, C:0.09, G:0.15, T:0.45
Consensus pattern (39 bp):
TTAGTATGAGTCTTTAATTATGTCATAGTATGAACATCA
Found at i:125829487 original size:24 final size:24
Alignment explanation
Indices: 125829457--125829505 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
125829447 GTATGAGTGT
125829457 TTATAGTGTGATGATTCTTATGAG
1 TTATAGTGTGATGATTCTTATGAG
*
125829481 TTATAGTGTGCTGATTCTTATGAG
1 TTATAGTGTGATGATTCTTATGAG
125829505 T
1 T
125829506 GTCTTTAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.22, C:0.06, G:0.24, T:0.47
Consensus pattern (24 bp):
TTATAGTGTGATGATTCTTATGAG
Found at i:125838711 original size:45 final size:45
Alignment explanation
Indices: 125838651--125838743 Score: 177
Period size: 45 Copynumber: 2.1 Consensus size: 45
125838641 GTACTTTCCT
*
125838651 TTTATTATAGTGAAATCTTCTTTTGCTAGCGATTTTTTATCTTTC
1 TTTATTATAGCGAAATCTTCTTTTGCTAGCGATTTTTTATCTTTC
125838696 TTTATTATAGCGAAATCTTCTTTTGCTAGCGATTTTTTATCTTTC
1 TTTATTATAGCGAAATCTTCTTTTGCTAGCGATTTTTTATCTTTC
125838741 TTT
1 TTT
125838744 TTAAGAATTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.19, C:0.14, G:0.11, T:0.56
Consensus pattern (45 bp):
TTTATTATAGCGAAATCTTCTTTTGCTAGCGATTTTTTATCTTTC
Done.