Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 404 of 438
Found at i:125839915 original size:24 final size:24
Alignment explanation
Indices: 125839870--125839916 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
125839860 ACTGAACTAA
* *
125839870 TTTTTTATTAAAATTTTCATATAT
1 TTTTTTATTAAAATATTAATATAT
125839894 TTTTATTATTAAAA-ATTAATATA
1 TTTT-TTATTAAAATATTAATATA
125839917 ATTGACTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (24 bp):
TTTTTTATTAAAATATTAATATAT
Found at i:125844148 original size:38 final size:38
Alignment explanation
Indices: 125844082--125844156 Score: 105
Period size: 38 Copynumber: 2.0 Consensus size: 38
125844072 GAATTCTTAA
**
125844082 TCTATCACAAATTGTTAACTATGCATTGATAATAATAC
1 TCTATCACAAATCATTAACTATGCATTGATAATAATAC
* * *
125844120 TCTATCACAAATCATTAATTTTGTATTGATAATAATA
1 TCTATCACAAATCATTAACTATGCATTGATAATAATA
125844157 TTCATACTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (38 bp):
TCTATCACAAATCATTAACTATGCATTGATAATAATAC
Found at i:125844850 original size:24 final size:22
Alignment explanation
Indices: 125844816--125844859 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
125844806 TATCAAACTG
125844816 AAAAAAAATTAATGTTAAATTA
1 AAAAAAAATTAATGTTAAATTA
*
125844838 AAAAAAATTATTAATTTTAAAT
1 AAAAAAA--ATTAATGTTAAAT
125844860 ACCAAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
24 12 0.63
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (22 bp):
AAAAAAAATTAATGTTAAATTA
Found at i:125845897 original size:16 final size:16
Alignment explanation
Indices: 125845876--125845907 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
125845866 AAACTTGCAG
125845876 GTTGATTGAGAACATC
1 GTTGATTGAGAACATC
125845892 GTTGATTGAGAACATC
1 GTTGATTGAGAACATC
125845908 TTAAAACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (16 bp):
GTTGATTGAGAACATC
Found at i:125846607 original size:3 final size:3
Alignment explanation
Indices: 125846599--125846626 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
125846589 ATGAGCTTCT
125846599 CAC CAC CAC CAC CAC CAC CAC CAC CAC C
1 CAC CAC CAC CAC CAC CAC CAC CAC CAC C
125846627 TGTTTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Found at i:125850432 original size:81 final size:81
Alignment explanation
Indices: 125850295--125850669 Score: 329
Period size: 81 Copynumber: 4.6 Consensus size: 81
125850285 GAATACTTTA
* * * *
125850295 GTTTACCAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAAT
1 GTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAAT
125850360 TACCAAAATACCCTTG
66 TACCAAAATACCCTTG
* *
125850376 GTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAAT
1 GTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAAT
125850441 TACCAAAATACCCTTG
66 TACCAAAATACCCTTG
** * * * * ** *
125850457 GTTTGTAAAATTATCAAAATACTCTTAGTTTGTAAAATTACCAAAATACCATTAATTTGTGAAAT
1 GTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAAT
** *
125850522 TACTGAAATACCCTCG
66 TACCAAAATACCCTTG
*** ** *** * ** * * ** *
125850538 ACCTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTTACAGAAT
1 GTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAAT
* *** *
125850603 TATCATTTTACCCTCG
66 TACCAAAATACCCTTG
* * * ** *
125850619 ATTTACAAAATTACCGAAATACCCCT-GTAGGGTAGAATTACCAAAATACCC
1 GTTTACAAAATTACCAAAATACCCTTGGT-TTGTAAAATTACCAAAATACCC
125850670 CTGTAGGGTA
Statistics
Matches: 236, Mismatches: 57, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
81 236 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (81 bp):
GTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAAT
TACCAAAATACCCTTG
Found at i:125850515 original size:27 final size:27
Alignment explanation
Indices: 125850302--125850591 Score: 337
Period size: 27 Copynumber: 10.7 Consensus size: 27
125850292 TTAGTTTACC
*
125850302 AAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
125850329 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
125850356 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
125850383 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
125850410 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
125850437 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
125850464 AAATTATCAAAATACTCTTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* ** *
125850491 AAATTACCAAAATACCATTAATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
** * ***
125850518 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*** * **
125850545 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
125850572 AAATTACCAAAGTACCCTTG
1 AAATTACCAAAATACCCTTG
125850592 ATTTACAGAA
Statistics
Matches: 227, Mismatches: 36, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 227 1.00
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:125850603 original size:27 final size:26
Alignment explanation
Indices: 125850554--125850642 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 26
125850544 AAAATTATTG
* **
125850554 AAATACCCTCGACTTGTAAAATTACC
1 AAATACCCTCGATTTACAAAATTACC
* * *
125850580 AAAGTACCCTTGATTTACAGAATTATC
1 AAA-TACCCTCGATTTACAAAATTACC
**
125850607 ATTTTACCCTCGATTTACAAAATTACC
1 A-AATACCCTCGATTTACAAAATTACC
125850634 GAAATACCC
1 -AAATACCC
125850643 CTGTAGGGTA
Statistics
Matches: 47, Mismatches: 13, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
26 3 0.06
27 43 0.91
28 1 0.02
ACGTcount: A:0.37, C:0.25, G:0.08, T:0.30
Consensus pattern (26 bp):
AAATACCCTCGATTTACAAAATTACC
Found at i:125850657 original size:27 final size:27
Alignment explanation
Indices: 125850627--125851063 Score: 653
Period size: 27 Copynumber: 16.3 Consensus size: 27
125850617 CGATTTACAA
125850627 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
125850654 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
125850681 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
125850708 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
125850735 AATTACTGAAATACCCC-GTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
125850761 AATTATCGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
125850788 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
125850815 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
125850842 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
125850869 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
125850896 AATTACTAAAATACCCCTGTATGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
125850923 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
125850950 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
125850977 AATTACCGAAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
125851004 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
125851031 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
125851057 AATTACC
1 AATTACC
125851064 ATTTTGCCCC
Statistics
Matches: 371, Mismatches: 38, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
26 40 0.11
27 331 0.89
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:125851542 original size:22 final size:22
Alignment explanation
Indices: 125851490--125851554 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
125851480 TTAAAGCCTT
* *
125851490 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
125851512 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
125851534 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
125851555 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:125851743 original size:27 final size:27
Alignment explanation
Indices: 125851713--125851814 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
125851703 ATTCTGTTAA
* *
125851713 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
125851740 GTGGCTATGCCACAAATATCT-ATTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
125851767 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
125851794 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
125851815 ATAACTGAGT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 7 0.11
27 52 0.80
28 6 0.09
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:125851990 original size:6 final size:6
Alignment explanation
Indices: 125851975--125852034 Score: 61
Period size: 6 Copynumber: 9.8 Consensus size: 6
125851965 ATTCTGTTAC
* *
125851975 CTGATA CTGATT CTGATT CTGATT CTG-TCAC CTGATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT
125852024 CT-AGTT CTGAT
1 CTGA-TT CTGAT
125852035 AATGTTTCTT
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
5 2 0.04
6 39 0.85
7 4 0.09
8 1 0.02
ACGTcount: A:0.18, C:0.20, G:0.17, T:0.45
Consensus pattern (6 bp):
CTGATT
Found at i:125851995 original size:25 final size:23
Alignment explanation
Indices: 125851981--125852034 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 23
125851971 TTACCTGATA
125851981 CTGATTCTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGT--C
*
125852006 CTGATTCTGATTCTGATTCTAGTT
1 CTGATTCTGATTCTGATTCT-GTC
125852030 CTGAT
1 CTGAT
125852035 AATGTTTCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.19
25 20 0.74
26 2 0.07
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (23 bp):
CTGATTCTGATTCTGATTCTGTC
Found at i:125852032 original size:31 final size:31
Alignment explanation
Indices: 125851965--125852025 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
125851955 CTGATTTTTT
*
125851965 ATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGTCACCTGATACTGATTCTGATTCTG
*
125851996 ATTCTGTCACCTGATTCTGATTCTGATTCT
1 ATTCTGTCACCTGATACTGATTCTGATTCT
125852026 AGTTCTGATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.46
Consensus pattern (31 bp):
ATTCTGTCACCTGATACTGATTCTGATTCTG
Found at i:125854190 original size:27 final size:27
Alignment explanation
Indices: 125853981--125854189 Score: 292
Period size: 27 Copynumber: 7.7 Consensus size: 27
125853971 TTAGTTTACC
* *
125853981 AAATTACCAAAATACCCTTAGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
125854008 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
125854035 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
125854062 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
125854089 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
125854116 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
125854143 AAACTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
**
125854170 AAATTACTGAAATACCCTTG
1 AAATTACCAAAATACCCTTG
125854190 ACCTGTAAAA
Statistics
Matches: 160, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 160 1.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:125854293 original size:27 final size:27
Alignment explanation
Indices: 125853981--125854293 Score: 259
Period size: 27 Copynumber: 11.6 Consensus size: 27
125853971 TTAGTTTACC
125853981 AAATTACCAAAATACCCTT-AGTTTATA
1 AAATTACCAAAATACCCTTGA-TTTATA
* * * *
125854008 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTATA
* *
125854035 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGATTTATA
* * *
125854062 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTATA
* *
125854089 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGATTTATA
* *
125854116 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTATA
* * *
125854143 AAACTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCTTGATTTATA
** ** *
125854170 AAATTACTGAAATACCCTTGACCTGTA
1 AAATTACCAAAATACCCTTGATTTATA
*** ** * *
125854197 AAATTATTGAAATACCCTCAACTTGTA
1 AAATTACCAAAATACCCTTGATTTATA
* * * *
125854224 ATATTACCAAAGTACACTTGATTTACA
1 AAATTACCAAAATACCCTTGATTTATA
* *** * *
125854251 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTTGATTTATA
*
125854278 AAATTACCGAAATACC
1 AAATTACCAAAATACC
125854294 TCTGTAGGGT
Statistics
Matches: 233, Mismatches: 52, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
27 233 1.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGATTTATA
Found at i:125854309 original size:27 final size:27
Alignment explanation
Indices: 125854279--125854581 Score: 376
Period size: 27 Copynumber: 11.3 Consensus size: 27
125854269 CGATTTACAA
*
125854279 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
125854306 AATTATCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
125854333 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
125854360 AATTATC-AGAATACCCCTATAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
125854387 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
125854414 AATTACTAAAATACCCCTGTATGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
125854441 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
125854468 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
125854495 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
125854522 AATTACTAAAATACCCTTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
125854549 AATTATCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
125854575 AATTACC
1 AATTACC
125854582 ATTTTGCCCC
Statistics
Matches: 241, Mismatches: 33, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
26 17 0.07
27 223 0.93
28 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:125855060 original size:22 final size:22
Alignment explanation
Indices: 125855008--125855063 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
125854998 TTAAAGCCTT
* *
125855008 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
125855030 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
125855052 CTGATTATGGCT
1 CTGATTATGGCT
125855064 GTGTATCAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 1 0.04
22 26 0.93
23 1 0.04
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:125855261 original size:27 final size:26
Alignment explanation
Indices: 125855231--125855332 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
125855221 ATTCTGTTAA
* *
125855231 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTT-TG
*
125855258 GTGGCTATGCCACAAATATCTGTTTTG
1 GTGGCTCTGCCAC-AATATCTGTTTTG
* *
125855285 ATGGCTCTGCTACAATATCTGTATTTG
1 GTGGCTCTGCCACAATATCTGT-TTTG
* *
125855312 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
125855333 ATAACTGAGC
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 9 0.14
27 45 0.70
28 10 0.16
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.39
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTTTG
Found at i:125855549 original size:31 final size:31
Alignment explanation
Indices: 125855469--125855542 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
125855459 TTGCATTCAC
* *
125855469 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTCACCTGATACTG
* * *
125855501 ATTTTAATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
125855532 ATTCTGATTCT
1 ATTCTGATTCT
125855543 AGTTCTGATA
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
31 30 0.86
32 5 0.14
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:125857576 original size:46 final size:46
Alignment explanation
Indices: 125857509--125857683 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
125857499 TGTAACCCGC
* *
125857509 CCATAAGCGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
125857555 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * *
125857605 -C-TCA-CGAACTCGGACTTAACTCAACGAGTTTGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
125857648 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
125857684 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 59 0.56
47 25 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:125857675 original size:93 final size:93
Alignment explanation
Indices: 125857516--125857688 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
125857506 CGCCCATAAG
* *
125857516 CGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
125857581 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* * * *
125857609 CGAACTCGGACTTAACTCAACGAGTTTGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
125857674 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
125857689 CAAATATCTG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:125861626 original size:39 final size:39
Alignment explanation
Indices: 125861508--125861690 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
125861498 TCGTTCAAAC
* * ** * **
125861508 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
125861548 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
125861588 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
125861627 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
125861666 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
125861691 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:125874437 original size:13 final size:13
Alignment explanation
Indices: 125874419--125874446 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
125874409 TGAAAATTCG
125874419 TTAATGGTACATT
1 TTAATGGTACATT
125874432 TTAATGGTACATT
1 TTAATGGTACATT
125874445 TT
1 TT
125874447 CCCCTATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (13 bp):
TTAATGGTACATT
Found at i:125877982 original size:32 final size:32
Alignment explanation
Indices: 125877946--125878007 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
125877936 AGCTTTTGGT
125877946 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
1 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
*
125877978 TTTTTCGTGTTGTCAAAGAGTTGAACAATG
1 TTTTTCATGTTGTCAAAGAGTTGAACAATG
125878008 AAAAATAGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (32 bp):
TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
Found at i:125886192 original size:14 final size:14
Alignment explanation
Indices: 125886175--125886202 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
125886165 CTCTGATACT
125886175 AATAGAATAGAAAA
1 AATAGAATAGAAAA
125886189 AATAGAATAGAAAA
1 AATAGAATAGAAAA
125886203 TACTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AATAGAATAGAAAA
Found at i:125892570 original size:61 final size:61
Alignment explanation
Indices: 125892475--125892596 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
125892465 AATAATCGAG
125892475 TTAGAGCTGTAGCTATGAGCGCTACAGATGGTCTAACGAGAGGAATGGAAGTGATTGACAC
1 TTAGAGCTGTAGCTATGAGCGCTACAGATGGTCTAACGAGAGGAATGGAAGTGATTGACAC
125892536 TTAGAGCTGTAGCTATGAGCGCTACAGATGGTCTAACGAGAGGAATGGAAGTGATTGACAC
1 TTAGAGCTGTAGCTATGAGCGCTACAGATGGTCTAACGAGAGGAATGGAAGTGATTGACAC
125892597 GGGAGCTGCT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (61 bp):
TTAGAGCTGTAGCTATGAGCGCTACAGATGGTCTAACGAGAGGAATGGAAGTGATTGACAC
Found at i:125895189 original size:15 final size:15
Alignment explanation
Indices: 125895169--125895199 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
125895159 CTGTATCAGT
125895169 AATGAATCAGAGCAC
1 AATGAATCAGAGCAC
125895184 AATGAATCAGAGCAC
1 AATGAATCAGAGCAC
125895199 A
1 A
125895200 GGAACCGTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.19, G:0.19, T:0.13
Consensus pattern (15 bp):
AATGAATCAGAGCAC
Found at i:125896644 original size:18 final size:18
Alignment explanation
Indices: 125896623--125896665 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
125896613 CCTTTCCCCC
*
125896623 TTCTTTCATTTGTTTATT
1 TTCTTTCATTTATTTATT
*
125896641 TTCTTTCGTTTATTTATT
1 TTCTTTCATTTATTTATT
*
125896659 TGCTTTC
1 TTCTTTC
125896666 TTTTTATGCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.09, C:0.14, G:0.07, T:0.70
Consensus pattern (18 bp):
TTCTTTCATTTATTTATT
Found at i:125897187 original size:27 final size:28
Alignment explanation
Indices: 125897142--125897198 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 28
125897132 TAATTATTTT
*
125897142 TTTATAGTATAATAGCTAGAACTAATTA
1 TTTATAGTATAATAACTAGAACTAATTA
*
125897170 TTTATA-TTTAATAACTAGAACTAATTA
1 TTTATAGTATAATAACTAGAACTAATTA
125897197 TT
1 TT
125897199 CCATTCATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 21 0.78
28 6 0.22
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.44
Consensus pattern (28 bp):
TTTATAGTATAATAACTAGAACTAATTA
Found at i:125897311 original size:15 final size:17
Alignment explanation
Indices: 125897291--125897322 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
125897281 ACGTTTCATT
125897291 TATATAA-T-CATAAAA
1 TATATAACTGCATAAAA
125897306 TATATAACTGCATAAAA
1 TATATAACTGCATAAAA
125897323 AGATTTTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.31
Consensus pattern (17 bp):
TATATAACTGCATAAAA
Found at i:125897480 original size:17 final size:17
Alignment explanation
Indices: 125897458--125897496 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
125897448 AATTTAGATG
*
125897458 TAAAATATACTA-AAATA
1 TAAAATAAACTAGAAA-A
125897475 TAAAATAAACTAGAAAA
1 TAAAATAAACTAGAAAA
125897492 TAAAA
1 TAAAA
125897497 ATGGAGTCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.23
Consensus pattern (17 bp):
TAAAATAAACTAGAAAA
Found at i:125897580 original size:9 final size:9
Alignment explanation
Indices: 125897566--125897597 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
125897556 ATAAAAAAAG
125897566 ATATTAAAT
1 ATATTAAAT
125897575 ATATTAAAT
1 ATATTAAAT
*
125897584 ATATAAAAT
1 ATATTAAAT
125897593 ATATT
1 ATATT
125897598 GATAAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
ATATTAAAT
Found at i:125897787 original size:13 final size:13
Alignment explanation
Indices: 125897771--125897797 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
125897761 TTCGAGTCTC
125897771 TAATTCATATTAA
1 TAATTCATATTAA
125897784 TAATTCATATTAA
1 TAATTCATATTAA
125897797 T
1 T
125897798 TATGAATAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATTCATATTAA
Found at i:125898226 original size:21 final size:23
Alignment explanation
Indices: 125898184--125898239 Score: 73
Period size: 22 Copynumber: 2.5 Consensus size: 23
125898174 TTTATTTATC
125898184 TATTTA-ATATTATATTCAA-TT
1 TATTTATATATTATATTCAATTT
*
125898205 TATTTATATATTATA-TCTATTT
1 TATTTATATATTATATTCAATTT
125898227 TATTATATATATT
1 TATT-TATATATT
125898240 CTAAATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 9 0.29
22 14 0.45
23 8 0.26
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (23 bp):
TATTTATATATTATATTCAATTT
Found at i:125898248 original size:23 final size:22
Alignment explanation
Indices: 125898203--125898252 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
125898193 TTATATTCAA
**
125898203 TTTATTTATATATTATATCTAT
1 TTTATTTATATATTATAAATAT
*
125898225 TTTATTATATATATTCTAAATAT
1 TTTATT-TATATATTATAAATAT
125898248 TTTAT
1 TTTAT
125898253 GGAAATTTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 6 0.25
23 18 0.75
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTATTTATATATTATAAATAT
Found at i:125902211 original size:18 final size:18
Alignment explanation
Indices: 125902132--125902225 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
125902122 CAAGGTCACG
*
125902132 ATCAATAGCGTCACTATC
1 ATCAATATCGTCACTATC
* *
125902150 ATCAATAGCGTCACTAGC
1 ATCAATATCGTCACTATC
*
125902168 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTATC
125902186 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTATC
125902204 ATCAATATCG--A-TATC
1 ATCAATATCGTCACTATC
125902219 ATCAATA
1 ATCAATA
125902226 AGAAAACCTT
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (18 bp):
ATCAATATCGTCACTATC
Found at i:125902212 original size:9 final size:9
Alignment explanation
Indices: 125902132--125902212 Score: 54
Period size: 9 Copynumber: 9.0 Consensus size: 9
125902122 CAAGGTCACG
*
125902132 ATCAATAGC
1 ATCAATATC
* *
125902141 GTCACTATC
1 ATCAATATC
*
125902150 ATCAATAGC
1 ATCAATATC
* * *
125902159 GTCACTAGC
1 ATCAATATC
125902168 ATCAATATC
1 ATCAATATC
* * *
125902177 GTCACTAGC
1 ATCAATATC
125902186 ATCAATATC
1 ATCAATATC
* *
125902195 GTCACTATC
1 ATCAATATC
125902204 ATCAATATC
1 ATCAATATC
125902213 GATATCATCA
Statistics
Matches: 51, Mismatches: 21, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.28
Consensus pattern (9 bp):
ATCAATATC
Found at i:125912646 original size:14 final size:14
Alignment explanation
Indices: 125912624--125912657 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
125912614 AATAGAAAAC
*
125912624 TTTTCATCACTTTT
1 TTTTTATCACTTTT
125912638 TTTTTATCACTTTT
1 TTTTTATCACTTTT
*
125912652 TCTTTA
1 TTTTTA
125912658 GCCTCCGGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTTATCACTTTT
Found at i:125912994 original size:12 final size:13
Alignment explanation
Indices: 125912952--125913001 Score: 57
Period size: 12 Copynumber: 3.7 Consensus size: 13
125912942 ATATATATAT
*
125912952 TTTACTTTATTCTC
1 TTTACTTTATT-TA
125912966 TTTATTCTTTATTTA
1 TTTA--CTTTATTTA
125912981 TTTACTTT-TTTA
1 TTTACTTTATTTA
125912993 TTTACTTTA
1 TTTACTTTA
125913002 CCACTCTCAG
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
12 12 0.38
13 4 0.12
14 4 0.12
15 5 0.16
16 7 0.22
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTACTTTATTTA
Found at i:125913993 original size:16 final size:16
Alignment explanation
Indices: 125913972--125914022 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
125913962 AAGAAAGAGC
125913972 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
125913988 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
*
125914004 AAACACGCTAGTAAAT
1 AAATACGCTAGTAAAT
125914020 AAA
1 AAA
125914023 ATACTAGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22
Consensus pattern (16 bp):
AAATACGCTAGTAAAT
Found at i:125914962 original size:16 final size:17
Alignment explanation
Indices: 125914941--125914974 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
125914931 AATTAGAGAA
125914941 TTCTATTTAA-TTCTAT
1 TTCTATTTAATTTCTAT
125914957 TTCTATTTAATTTCTAT
1 TTCTATTTAATTTCTAT
125914974 T
1 T
125914975 AAATCCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.65
Consensus pattern (17 bp):
TTCTATTTAATTTCTAT
Found at i:125915667 original size:15 final size:15
Alignment explanation
Indices: 125915649--125915679 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
125915639 ATAACTAAAG
125915649 AAAAAATAGATAGAT
1 AAAAAATAGATAGAT
125915664 AAAAAATAGATAGAT
1 AAAAAATAGATAGAT
125915679 A
1 A
125915680 GATGAGAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.13, T:0.19
Consensus pattern (15 bp):
AAAAAATAGATAGAT
Found at i:125934995 original size:30 final size:30
Alignment explanation
Indices: 125934940--125935070 Score: 153
Period size: 30 Copynumber: 4.5 Consensus size: 30
125934930 ATAGTGAATC
125934940 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
125934969 TGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
125934999 CGCACACTTAGTGCTATGTAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
125935027 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
125935057 CGCACACTTAGTGC
1 CGCACACTTAGTGC
125935071 CAATCTTGTC
Statistics
Matches: 88, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
27 2 0.02
28 21 0.24
29 18 0.20
30 46 0.52
31 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:125939659 original size:22 final size:21
Alignment explanation
Indices: 125939634--125939709 Score: 66
Period size: 24 Copynumber: 3.4 Consensus size: 21
125939624 TAAGTTTAAG
125939634 AAAAT-AAAAAAAAGCAACTAAA-
1 AAAATAAAAAAAAAG--A-TAAAT
125939656 AAAATTAAAAAAAAAGATAAAT
1 AAAA-TAAAAAAAAAGATAAAT
*
125939678 AAAATAAAAAAATGAAAATAAAT
1 AAAATAAAAAAA--AAGATAAAT
125939701 AATAATAAA
1 AA-AATAAA
125939710 CTCAATGATA
Statistics
Matches: 47, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
21 12 0.26
22 9 0.19
23 11 0.23
24 15 0.32
ACGTcount: A:0.78, C:0.03, G:0.04, T:0.16
Consensus pattern (21 bp):
AAAATAAAAAAAAAGATAAAT
Found at i:125939698 original size:23 final size:22
Alignment explanation
Indices: 125939634--125939709 Score: 75
Period size: 22 Copynumber: 3.4 Consensus size: 22
125939624 TAAGTTTAAG
* *
125939634 AAAATAAAAAAAAGCAACTAAA-
1 AAAAT-AAAAAAAGAAAATAAAT
*
125939656 AAAATTAAAAAAA-AAGATAAAT
1 AAAA-TAAAAAAAGAAAATAAAT
125939678 AAAATAAAAAAATGAAAATAAAT
1 AAAATAAAAAAA-GAAAATAAAT
125939701 AATAATAAA
1 AA-AATAAA
125939710 CTCAATGATA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
21 13 0.29
22 15 0.33
23 11 0.24
24 6 0.13
ACGTcount: A:0.78, C:0.03, G:0.04, T:0.16
Consensus pattern (22 bp):
AAAATAAAAAAAGAAAATAAAT
Found at i:125939702 original size:18 final size:20
Alignment explanation
Indices: 125939634--125939699 Score: 64
Period size: 20 Copynumber: 3.1 Consensus size: 20
125939624 TAAGTTTAAG
125939634 AAAATAAAAAAAAGCAACTAAA-
1 AAAATAAAAAAAAG--A-TAAAT
125939656 AAAATTAAAAAAAAAGATAAAT
1 AAAA-T-AAAAAAAAGATAAAT
*
125939678 AAAATAAAAAAATGA-AAAT
1 AAAATAAAAAAAAGATAAAT
125939697 AAA
1 AAA
125939700 TAATAATAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
19 7 0.17
20 9 0.22
21 5 0.12
22 9 0.22
23 1 0.03
24 9 0.22
ACGTcount: A:0.79, C:0.03, G:0.05, T:0.14
Consensus pattern (20 bp):
AAAATAAAAAAAAGATAAAT
Found at i:125939858 original size:4 final size:4
Alignment explanation
Indices: 125939849--125939886 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 4
125939839 GGTAAAATAA
125939849 AAAT AAAT AATAT AAA- AAAT -AAT AAAT AAAT AAAT AAA
1 AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AAA
125939887 ATAGAAGGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
3 6 0.19
4 21 0.68
5 4 0.13
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:125939863 original size:15 final size:14
Alignment explanation
Indices: 125939843--125939885 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
125939833 AAAATTGGTA
125939843 AAAT-AAAAATAAAT
1 AAATAAAAAAT-AAT
125939857 AATATAAAAAATAAT
1 AA-ATAAAAAATAAT
125939872 AAATAAATAAATAA
1 AAATAAA-AAATAA
125939886 AATAGAAGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 7 0.27
15 13 0.50
16 6 0.23
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAATAAAAAATAAT
Found at i:125939878 original size:23 final size:21
Alignment explanation
Indices: 125939842--125939887 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 21
125939832 AAAAATTGGT
125939842 AAAATAAAAATAAATAATATAA
1 AAAATAAAAATAAATAA-ATAA
125939864 AAAATAATAAATAAATAAATAA
1 AAAATAA-AAATAAATAAATAA
125939886 AA
1 AA
125939888 TAGAAGGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (21 bp):
AAAATAAAAATAAATAAATAA
Found at i:125944072 original size:17 final size:17
Alignment explanation
Indices: 125944042--125944089 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
125944032 ATTTAACTGA
*
125944042 TTTTTTAA-AATTTAAT
1 TTTTTTAATATTTTAAT
125944058 TTTTTTAATATTTTAAT
1 TTTTTTAATATTTTAAT
*
125944075 ATTTTTAAT-TTTTAA
1 TTTTTTAATATTTTAA
125944090 AAGTAATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 14 0.48
17 15 0.52
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTTTAATATTTTAAT
Found at i:125947734 original size:27 final size:25
Alignment explanation
Indices: 125947693--125947745 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 25
125947683 TATGTTATTT
125947693 TATTTATATAGTTTCTGTT-AAATC
1 TATTTATATAGTTTCTGTTCAAATC
*
125947717 TATTTAATATATGTTTTCTTTTCAAATC
1 TATTT-ATATA-G-TTTCTGTTCAAATC
125947745 T
1 T
125947746 GTTATGTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 5 0.21
25 5 0.21
26 1 0.04
27 7 0.29
28 6 0.25
ACGTcount: A:0.28, C:0.09, G:0.06, T:0.57
Consensus pattern (25 bp):
TATTTATATAGTTTCTGTTCAAATC
Found at i:125947785 original size:27 final size:27
Alignment explanation
Indices: 125947755--125947807 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
125947745 TGTTATGTAA
125947755 ATATTTTCTTCTAA-ACTTATT-ATATAT
1 ATATTTTCTT-TAACA-TTATTCATATAT
125947782 ATATTTTCTTTAACATTATTCATATA
1 ATATTTTCTTTAACATTATTCATATA
125947808 CAATTTGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (27 bp):
ATATTTTCTTTAACATTATTCATATAT
Found at i:125947813 original size:26 final size:27
Alignment explanation
Indices: 125947755--125947813 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
125947745 TGTTATGTAA
*
125947755 ATATTTTCTTCTAAACTTATTATATAT
1 ATATTTTCTTCTAAACTTATTATATAC
125947782 ATATTTTCTT-T-AACATTATTCATATAC
1 ATATTTTCTTCTAAAC-TTATT-ATATAC
125947809 A-ATTT
1 ATATTT
125947814 GGTTTTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 3 0.10
26 10 0.34
27 16 0.55
ACGTcount: A:0.34, C:0.12, G:0.00, T:0.54
Consensus pattern (27 bp):
ATATTTTCTTCTAAACTTATTATATAC
Found at i:125953233 original size:16 final size:17
Alignment explanation
Indices: 125953202--125953234 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
125953192 TTCATAAGTA
125953202 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
125953219 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
125953235 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:125953592 original size:46 final size:46
Alignment explanation
Indices: 125953515--125953728 Score: 241
Period size: 46 Copynumber: 4.7 Consensus size: 46
125953505 TTATCTTTGA
* * * * * *
125953515 CATGATGCCATAGTGTCTTTCAACTACGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGT
* * *
125953561 CATGTTTCCATGGTATTTTTCAACCATGGTCTTAGACATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
* * ** **
125953607 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
*
125953653 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
* * *
125953699 CAGGTTGTCATGGTATCTTCCAACCATGGT
1 CATGTTGCCATGGTATCTTTCAACCATGGT
125953729 ATCTTTCAAC
Statistics
Matches: 140, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
45 4 0.03
46 136 0.97
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.39
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
Found at i:125953677 original size:92 final size:92
Alignment explanation
Indices: 125953520--125953728 Score: 283
Period size: 92 Copynumber: 2.3 Consensus size: 92
125953510 TTTGACATGA
* * * * * * * *
125953520 TGCCATAGTGTCTTTCAACTACGGTCTTACTCATTTTCTGTCATGTTTCCATGGTATTTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
* *
125953585 CATGGTCTTAGACATTTCATGTCACGC
66 CATGGTCTTACACATTTCATATCACGC
*
125953612 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
* *
125953677 CATGGTCTTACACATTTCATATCAGGT
66 CATGGTCTTACACATTTCATATCACGC
* *
125953704 TGTCATGGTATCTTCCAACCATGGT
1 TGCCATGGTATCTTTCAACCATGGT
125953729 ATCTTTCAAC
Statistics
Matches: 102, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
92 102 1.00
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACGC
Found at i:125953726 original size:16 final size:16
Alignment explanation
Indices: 125953707--125953744 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
125953697 ATCAGGTTGT
125953707 CATGGTATCTTCCAAC
1 CATGGTATCTTCCAAC
*
125953723 CATGGTATCTTTCAAC
1 CATGGTATCTTCCAAC
125953739 CATGGT
1 CATGGT
125953745 CTTACACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (16 bp):
CATGGTATCTTCCAAC
Found at i:125953729 original size:62 final size:62
Alignment explanation
Indices: 125953660--125953790 Score: 235
Period size: 62 Copynumber: 2.1 Consensus size: 62
125953650 CGTCATGTTG
* *
125953660 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGTCATGGTATCTTCCAA
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATATTCCAA
*
125953722 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATATTTCAA
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATATTCCAA
125953784 CCATGGT
1 CCATGGT
125953791 CTTAAACATT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 66 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (62 bp):
CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATATTCCAA
Found at i:125953768 original size:108 final size:108
Alignment explanation
Indices: 125953614--125953809 Score: 320
Period size: 108 Copynumber: 1.8 Consensus size: 108
125953604 TGTCACGCTG
** * * * *
125953614 CCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCA
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCACATCAGGTTGCCATGGTATATTTCAACCA
*
125953679 TGGTCTTACACATTTCATATCAGGTTGTCATGGTATCTTCCAA
66 TGGTCTTAAACATTTCATATCAGGTTGTCATGGTATCTTCCAA
*
125953722 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATATTTCAACCA
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCACATCAGGTTGCCATGGTATATTTCAACCA
125953787 TGGTCTTAAACATTTCATATCAG
66 TGGTCTTAAACATTTCATATCAG
125953810 AGAGCACACT
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
108 80 1.00
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (108 bp):
CCATGGTATCTTTCAACCATGGTCTTACACATTTCACATCAGGTTGCCATGGTATATTTCAACCA
TGGTCTTAAACATTTCATATCAGGTTGTCATGGTATCTTCCAA
Found at i:125953772 original size:46 final size:46
Alignment explanation
Indices: 125953722--125953809 Score: 158
Period size: 46 Copynumber: 1.9 Consensus size: 46
125953712 TATCTTCCAA
* *
125953722 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTG
1 CCATGGTATATTTCAACCATGGTCTTAAACATTTCATATCAGGTTG
125953768 CCATGGTATATTTCAACCATGGTCTTAAACATTTCATATCAG
1 CCATGGTATATTTCAACCATGGTCTTAAACATTTCATATCAG
125953810 AGAGCACACT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (46 bp):
CCATGGTATATTTCAACCATGGTCTTAAACATTTCATATCAGGTTG
Found at i:125964598 original size:177 final size:177
Alignment explanation
Indices: 125963725--125964530 Score: 1319
Period size: 177 Copynumber: 4.6 Consensus size: 177
125963715 GCAACATCGG
*
125963725 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTAAGAATGGCGAGTCTTATC
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAGAATGGCGAGTCTTATC
* *
125963790 TCCATGTATCAGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGC
66 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGC
* *
125963855 AGGTTGAAGATACAAGTCTTATCTTTTTGAAGTTACAGAAAGCAGAC
131 AGGTTGAAGATACAAGTCTTATCTTCTTGAAGTTGCAGAAAGCAGAC
* *
125963902 TGAAAATTACAGATCTTATCTCCATGTATTGGCTATGGAGCAGATCAAGAATGGTGAGTCTTATC
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAGAATGGCGAGTCTTATC
* * * *
125963967 TCCATGTATTGGCTATGGAGCAGATTTTAGCCACTAGCCTTATCTCTTTGAGGTAGCAAGAAAGC
66 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGC
* *
125964032 AGGTTGAAGATACAAATCTTATCTTCTTGAAGTTGCAGGAAGCAGAC
131 AGGTTGAAGATACAAGTCTTATCTTCTTGAAGTTGCAGAAAGCAGAC
*
125964079 TGAAAATTACAGATCTTATCTCCATGTATTGGCTATGGAGCAGATCAAGAATGGCGAGTCTTATC
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAGAATGGCGAGTCTTATC
*
125964144 TCCATGCATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGC
66 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGC
* *
125964209 AGGTTCAAAATACAAGTCTTATCTTCTTGAAGTTGCAGAAAGCAGAC
131 AGGTTGAAGATACAAGTCTTATCTTCTTGAAGTTGCAGAAAGCAGAC
* *
125964256 TAAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAA-AATTGGTGAGTCTTAT
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAGAA-TGGCGAGTCTTAT
* * *
125964320 CTCTATGTATCGGCTATGAAGCAGATTTTAGCCACCAACCTTATCTCTCTGAGGTAGCAAGAGAG
65 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAG
* * *
125964385 CAAGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGAC
130 CAGGTTGAAGATACAAGTCTTATCTTCTTGAAGTTGCAGAAAGCAGAC
* *
125964433 TGAAAGTTACAGATCTTATCTCCATGTATCGCCTATGGAGCAGATCGAAG-ATGGCGAGTCTTAT
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATC-AAGAATGGCGAGTCTTAT
* *
125964497 CTCCATGTATCGACTATGGAGCAAATTTTAGCCA
65 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCA
125964531 TCGACTTTGT
Statistics
Matches: 583, Mismatches: 43, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
176 2 0.00
177 578 0.99
178 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (177 bp):
TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAGAATGGCGAGTCTTATC
TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGC
AGGTTGAAGATACAAGTCTTATCTTCTTGAAGTTGCAGAAAGCAGAC
Found at i:125966180 original size:27 final size:25
Alignment explanation
Indices: 125966139--125966191 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 25
125966129 TCATATACGT
125966139 TATTTATATAGTTTCTGTT-AAATC
1 TATTTATATAGTTTCTGTTCAAATC
*
125966163 TATTTAATATATGTTTTCTTTTCAAATC
1 TATTT-ATATA-G-TTTCTGTTCAAATC
125966191 T
1 T
125966192 GTTATGTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 5 0.21
25 5 0.21
26 1 0.04
27 7 0.29
28 6 0.25
ACGTcount: A:0.28, C:0.09, G:0.06, T:0.57
Consensus pattern (25 bp):
TATTTATATAGTTTCTGTTCAAATC
Found at i:125967657 original size:50 final size:50
Alignment explanation
Indices: 125967603--125967787 Score: 182
Period size: 50 Copynumber: 3.7 Consensus size: 50
125967593 AATAAAGACT
* *
125967603 CTACTCCCAGACGCATAGAGGGAAGCTTACAGAAGGTGGTAATAATGGTC
1 CTACTCCCAGACGCATAGAGGGAAGCTTACAGAAAGTGGTAATAATGGCC
* * * *
125967653 CTACTCCTAGA--CATATAGTGGAAGGCTTATAGAATA-TGGTAATAAAGGCC
1 CTACTCCCAGACGCATAGAG-GGAA-GCTTACAGAA-AGTGGTAATAATGGCC
* * * * * *
125967703 CTACTCCAAGACACATAAAGAGAAACTTACTGAAAGTGGTAATAATGGCC
1 CTACTCCCAGACGCATAGAGGGAAGCTTACAGAAAGTGGTAATAATGGCC
*
125967753 CTACTCCCAGACGCATGGA-GG-AGCCTTACAGAAAG
1 CTACTCCCAGACGCATAGAGGGAAG-CTTACAGAAAG
125967788 AATCACAGGT
Statistics
Matches: 108, Mismatches: 20, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
48 7 0.06
49 16 0.15
50 76 0.70
51 3 0.03
52 6 0.06
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (50 bp):
CTACTCCCAGACGCATAGAGGGAAGCTTACAGAAAGTGGTAATAATGGCC
Found at i:125967661 original size:100 final size:100
Alignment explanation
Indices: 125967557--125967770 Score: 239
Period size: 100 Copynumber: 2.1 Consensus size: 100
125967547 ATGATCTTGT
* * * * * * *
125967557 TCCTAAACGCATGGGGGGAGGCTTATAAAAGGTAGTAATAAAGACTCTACTCCCAGACGCATAGA
1 TCCTAGACGCATGGGGGAAGGCTTATAAAAGATAGTAATAAAGACCCTACTCCAAGACACATAAA
* * * *
125967622 GGGAAGCTTACAGAAGGTGGTAATAATGGTCCTAC
66 GAGAAACTTACAGAAAGTGGTAATAATGGCCCTAC
** * * * * * *
125967657 TCCTAGACATATAGTGGAAGGCTTATAGAATATGGTAATAAAGGCCCTACTCCAAGACACATAAA
1 TCCTAGACGCATGGGGGAAGGCTTATAAAAGATAGTAATAAAGACCCTACTCCAAGACACATAAA
*
125967722 GAGAAACTTACTGAAAGTGGTAATAATGGCCCTAC
66 GAGAAACTTACAGAAAGTGGTAATAATGGCCCTAC
*
125967757 TCCCAGACGCATGG
1 TCCTAGACGCATGG
125967771 AGGAGCCTTA
Statistics
Matches: 90, Mismatches: 24, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
100 90 1.00
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (100 bp):
TCCTAGACGCATGGGGGAAGGCTTATAAAAGATAGTAATAAAGACCCTACTCCAAGACACATAAA
GAGAAACTTACAGAAAGTGGTAATAATGGCCCTAC
Found at i:125968623 original size:26 final size:21
Alignment explanation
Indices: 125968567--125968613 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
125968557 TTAAGCCCCC
125968567 AAAAAAAACCTAACCCAAAAA
1 AAAAAAAACCTAACCCAAAAA
**
125968588 AAAAAAAACCTAACCCCCAAA
1 AAAAAAAACCTAACCCAAAAA
125968609 AAAAA
1 AAAAA
125968614 CCAAGAAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.70, C:0.26, G:0.00, T:0.04
Consensus pattern (21 bp):
AAAAAAAACCTAACCCAAAAA
Found at i:125971236 original size:12 final size:12
Alignment explanation
Indices: 125971219--125971254 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
125971209 ATTTATTTGA
125971219 CATTCATGCATT
1 CATTCATGCATT
125971231 CATTCATGCATT
1 CATTCATGCATT
*
125971243 CATTCATACATT
1 CATTCATGCATT
125971255 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:125979575 original size:69 final size:70
Alignment explanation
Indices: 125979409--125979583 Score: 217
Period size: 71 Copynumber: 2.5 Consensus size: 70
125979399 TTTTCAAGGG
* * ** *
125979409 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTA
1 AAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTTAATTTATA
125979474 TTTTCA
66 TTTT-A
* ** * * *
125979480 AAATTAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTTAGTTTATG
1 AAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTTAATTTATA
125979545 TTTT-
66 TTTTA
* *
125979549 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATTAACTCATATTGCGAGAGGTGAGTTGAGCCT
125979584 TTTAATTTTT
Statistics
Matches: 90, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
69 32 0.36
71 58 0.64
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (70 bp):
AAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTTAATTTATA
TTTTA
Found at i:125979704 original size:72 final size:71
Alignment explanation
Indices: 125979583--125979748 Score: 237
Period size: 72 Copynumber: 2.3 Consensus size: 71
125979573 GAGTTAAGCC
** *
125979583 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGGCACGC
125979647 TGAGGTA
65 TGAGGTA
*
125979654 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTG-TGAGAGGTGAGTTGAGCCTCAGGTCACG
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCT-AGAGGTGAGTTGAGCCTCAGGGCACG
125979718 CTGAGGTA
64 CTGAGGTA
* *
125979726 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
125979749 ACGTTGTTCA
Statistics
Matches: 86, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
71 13 0.15
72 69 0.80
73 4 0.05
ACGTcount: A:0.22, C:0.14, G:0.21, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:125979847 original size:140 final size:140
Alignment explanation
Indices: 125979681--125980029 Score: 617
Period size: 140 Copynumber: 2.5 Consensus size: 140
125979671 TTAATTTCAA
*
125979681 CTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
125979746 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
*
125979811 TCTAAATCAG
131 TCAAAATCAG
125979821 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
125979886 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
125979951 TCAAAATCAG
131 TCAAAATCAG
* * ** * *
125979961 CTCATATTGCGAGAGTTGAGTTGAGCCTCGGGGAACGCTGAGGTATTTTCAATTTTTGTGTTTTA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGT-TTTCA
125980026 ATTT
65 ATTT
125980030 CAACTCATAT
Statistics
Matches: 200, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
140 192 0.96
141 8 0.04
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:125980039 original size:212 final size:211
Alignment explanation
Indices: 125979821--125980240 Score: 759
Period size: 212 Copynumber: 2.0 Consensus size: 211
125979811 TCTAAATCAG
125979821 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
125979886 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
* * *
125979951 TCAAAATCAGCTCATATTGCGAGAGTTGAGTTGAGCCTCGGGGAACGCTGAGGTATTTTCAATTT
131 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGAACGCTAAGGTATTTTCAATTT
* *
125980016 TTGTGTTTTAATTTCAA
196 CTGT-TTTCAATTTCAA
125980033 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
125980098 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
* **
125980163 TCAAAATCAGCTCATATTGCGAGAGGTGTGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTT
131 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGAACGCTAAGGTATTTTCAATTT
125980228 CTGTTTTCAATTT
196 CTGTTTTCAATTT
125980241 ACGTTGTTCA
Statistics
Matches: 200, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
211 8 0.04
212 192 0.96
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.38
Consensus pattern (211 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGAACGCTAAGGTATTTTCAATTT
CTGTTTTCAATTTCAA
Found at i:125980053 original size:352 final size:352
Alignment explanation
Indices: 125979555--125980380 Score: 1460
Period size: 352 Copynumber: 2.4 Consensus size: 352
125979545 TTTTAAATTG
* ** *
125979555 ACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTT-TTGTTTTTCAAAATCAACTCATATTG
1 ACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTG
*
125979618 CTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACT
65 CAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACT
*
125979683 CATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATT
130 CATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATT
125979748 TACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTC
195 TACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTC
* *
125979813 TAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
260 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCT
125979878 GTTTTCAATTTACGTTGTTCAAGAATCA
325 GTTTTCAATTTACGTTGTTCAAGAATCA
125979906 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGC
* * *
125979971 GAGAGTTGAGTTGAGCCTCGGGGAACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTC
66 AAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTC
125980036 ATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTT
131 ATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTT
125980101 ACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCA
196 ACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCA
*
125980166 AAATCAGCTCATATTGCGAGAGGTGTGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTG
261 AAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTG
125980231 TTTTCAATTTACGTTGTTCAAGAATCA
326 TTTTCAATTTACGTTGTTCAAGAATCA
*
125980258 ACTCATATTACGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGC
* * * * *
125980323 AAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGT-TTTCAATTT
66 AAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTT
125980381 ACGTTGTTCA
Statistics
Matches: 453, Mismatches: 20, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
351 41 0.09
352 412 0.91
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (352 bp):
ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGC
AAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTC
ATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTT
ACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCA
AAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTG
TTTTCAATTTACGTTGTTCAAGAATCA
Found at i:125980078 original size:72 final size:71
Alignment explanation
Indices: 125979961--125980100 Score: 217
Period size: 72 Copynumber: 2.0 Consensus size: 71
125979951 TCAAAATCAG
* * * *
125979961 CTCATATTGCGAGAGTTGAGTTGAGCCTCGGGGAACGCTGAGGTATTTTCAATTTTTGTGTTTTA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGAACGCTGAGGTATTTTCAATTTCTGT-TTTCA
125980026 ATTTCAA
65 ATTTCAA
**
125980033 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGAACGCTGAGGTATTTTCAATTTCTGTTTTCAA
125980098 TTT
66 TTT
125980101 ACGTTGTTCA
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
71 8 0.13
72 54 0.87
ACGTcount: A:0.21, C:0.16, G:0.24, T:0.39
Consensus pattern (71 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGAACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTCAA
Found at i:125980285 original size:140 final size:140
Alignment explanation
Indices: 125980033--125980660 Score: 1141
Period size: 140 Copynumber: 4.5 Consensus size: 140
125980023 TTAATTTCAA
125980033 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
125980098 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
125980163 TCAAAATCAG
131 TCAAAATCAG
* *
125980173 CTCATATTGCGAGAGGTGTGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
125980238 TTTACGTTGTTCAAGAATCAACTCATATTACGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
125980303 TCAAAATCAG
131 TCAAAATCAG
* *
125980313 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
125980378 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
125980443 TCAAAATCAG
131 TCAAAATCAG
125980453 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* *
125980518 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGATGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
125980583 TCAAAATCAG
131 TCAAAATCAG
125980593 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
125980657 TCAA
62 TCAA
125980661 AAAAAAAATT
Statistics
Matches: 472, Mismatches: 12, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
139 2 0.00
140 441 0.93
142 23 0.05
143 6 0.01
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:125980516 original size:13 final size:13
Alignment explanation
Indices: 125980498--125980531 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
125980488 CGCTGAGGTA
*
125980498 TTTTCAATTTCTG
1 TTTTCAATTTATG
125980511 TTTTCAATTTATG
1 TTTTCAATTTATG
125980524 TTGTTCAA
1 TT-TTCAA
125980532 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:125980790 original size:72 final size:72
Alignment explanation
Indices: 125980668--125980805 Score: 267
Period size: 72 Copynumber: 1.9 Consensus size: 72
125980658 CAAAAAAAAA
*
125980668 ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGT
1 ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGTAATTTCAATTTCTGT
125980733 TTTCAAT
66 TTTCAAT
125980740 ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGTAATTTCAATTTCTGT
1 ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGTAATTTCAATTTCTGT
125980805 T
66 T
125980806 CAAAATGAGT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (72 bp):
ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGTAATTTCAATTTCTGT
TTTCAAT
Found at i:125980816 original size:49 final size:49
Alignment explanation
Indices: 125980759--125980854 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
125980749 ATATTGCGAG
*
125980759 AAATGAGTTGAGCCTCAAGACACGTTAAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTAAGGTAATTTCAATTTCTGTTCA
*
125980808 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTAAGGTAATTTCAATTTCTGTT
125980855 TTCAAAATTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTAAGGTAATTTCAATTTCTGTTCA
Found at i:125980901 original size:121 final size:121
Alignment explanation
Indices: 125980687--125980923 Score: 411
Period size: 121 Copynumber: 2.0 Consensus size: 121
125980677 ATATTGCGAG
* *
125980687 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAATATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
*
125980752 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTAAGGTAATTTCAATTTCTGTTCA
125980808 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * * *
125980873 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTAAGGTAATTTCAATTTCT
125980924 TTTTTTTTAA
Statistics
Matches: 109, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
121 109 1.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTAAGGTAATTTCAATTTCTGTTCA
Found at i:125980968 original size:78 final size:75
Alignment explanation
Indices: 125980808--125981161 Score: 410
Period size: 75 Copynumber: 4.7 Consensus size: 75
125980798 TTTCTGTTCA
* * *
125980808 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC-TGTTTTC--AAAATTCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTTTTTTTCAAAAAAATCAACTC
125980870 ATATTGCGAG
66 ATATTGCGAG
* * *
125980880 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTTTTTTTTTAAAAAAAAATCAA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC--TTTTTTT-CAAAAAAATCAA
*
125980945 CTCATATTGTGAG
63 CTCATATTGCGAG
* *
125980958 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTTTTTTTCAAAAAAATCAACTC
125981023 ATATTGCGAG
66 ATATTGCGAG
** * * * * *
125981033 AGGTGAGTTGAGCCTCAGGACACGCTGAGGCAATTTCAATTTC-TGTTGTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTTTTTTTCAAAAAAATCAACTC
* *
125981097 GTATTGTGAG
66 ATATTGCGAG
*** * * **
125981107 AGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTTTTTTTCAA
125981162 TTTCTGCCTT
Statistics
Matches: 244, Mismatches: 29, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
72 40 0.16
74 44 0.18
75 65 0.27
76 27 0.11
77 6 0.02
78 62 0.25
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (75 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTTTTTTTCAAAAAAATCAACTC
ATATTGCGAG
Found at i:125981237 original size:94 final size:94
Alignment explanation
Indices: 125981083--125981255 Score: 249
Period size: 94 Copynumber: 1.8 Consensus size: 94
125981073 TTCTGTTGTC
* * *
125981083 AAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
*
125981148 TTTCCGTTTTTCAATTTCTGCCTTTCAAA
66 TTTCCGTCTTTCAATTTCTGCCTTTCAAA
* * * *
125981177 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCA
*
125981241 ATTTCTGTCTTTCAA
65 ATTTCCGTCTTTCAA
125981256 AAAAATCAAC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
93 2 0.03
94 67 0.97
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (94 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
TTTCCGTCTTTCAATTTCTGCCTTTCAAA
Found at i:125981285 original size:77 final size:77
Alignment explanation
Indices: 125981177--125981751 Score: 356
Period size: 88 Copynumber: 7.0 Consensus size: 77
125981167 GCCTTTCAAA
*
125981177 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAA
*
125981242 TTTCTGTCTTTC
66 TTTCTGTTTTTC
* * * * *
125981254 AAAAAAATCAACTCATACTGCGAGAGGTGAGTTGAG-CTTCAGATCACACACTGAGGTATTTTTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACACGCTGAGCTA--TTTT
* *
125981318 CAATTTATATTTTTC
63 CAATTTCTGTTTTTC
* * * * * *
125981333 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCT-GAGCTATTTTCA
**
125981397 AAATCTGTTTTTC
65 ATTTCTGTTTTTC
* **
125981410 AGATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 A-A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGA
125981475 GCTATTTTCAATTTCTGTTTTTTTTTTC
55 GCTATTTTCAATTTCTG-----TTTTTC
* * ** * * *
125981503 AAAAAAATTCAACTCATATTGCGAGATGTGAGTTGAGCTTTTTAATTTCTGCGAGA-GTTGAGTT
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC---CT--TGGCT-C-ACACGCTGAGCT
*
125981567 GAGTCTTTTAATTTCTGTTTTTC
58 -A-T-TTTCAATTTCTGTTTTTC
* * * ** *
125981590 --AAAAATCAACTCATATTGCAAGAGGTGAGTTGAACCTTCAG-TCACA-TATCGAGGTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACACGCT-GAGCTATTTTC
*
125981651 AAAATCTGCTTTTCAAGTTAAGTTTC
64 --AA------TTTC-TGTT---TTTC
**
125981677 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAA
125981741 TTTCTGTTTTT
66 TTTCTGTTTTT
125981752 AATGTCTGTT
Statistics
Matches: 390, Mismatches: 58, Indels: 101
0.71 0.11 0.18
Matches are distributed among these distances:
75 3 0.01
76 7 0.02
77 70 0.18
78 7 0.02
79 66 0.17
80 6 0.02
81 1 0.00
82 5 0.01
83 33 0.08
84 30 0.08
85 5 0.01
86 3 0.01
87 11 0.03
88 112 0.29
89 9 0.02
90 2 0.01
91 1 0.00
92 12 0.03
93 7 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (77 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAA
TTTCTGTTTTTC
Found at i:125981380 original size:79 final size:77
Alignment explanation
Indices: 125981177--125981380 Score: 264
Period size: 79 Copynumber: 2.6 Consensus size: 77
125981167 GCCTTTCAAA
* * * *
125981177 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAA
* *
125981242 TTTCTGTCTTTC
66 TTTATATCTTTC
* * * *
125981254 AAAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTGAGCTA--TTTTC
*
125981319 AATTTATATTTTTC
64 AATTTATATCTTTC
* * *
125981333 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACA
125981381 TGTCGAGGTA
Statistics
Matches: 108, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
77 50 0.46
79 58 0.54
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (77 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAA
TTTATATCTTTC
Found at i:125981528 original size:250 final size:241
Alignment explanation
Indices: 125980935--125981751 Score: 884
Period size: 255 Copynumber: 3.3 Consensus size: 241
125980925 TTTTTTTAAA
* * ** * *
125980935 AAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCC-T--CAAGACATGCTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGC-TCACGTGCTGAGCTATTTTCAA
* * *
125980997 TTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTG
65 TTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTG
* * * * * * *
125981060 AGGCA-ATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCA
130 AGGTATTTTTCAATTTCTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-
* * ** * *
125981124 GGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
194 GGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTG--TTTC
* *
125981174 AAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTT
1 ----AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTT
* *
125981239 CAATTTCTGTCTTTCAAAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCTTCAGATCACACA
62 CAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACA
* * *
125981304 CTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAG
127 CTGAGGTA-TTTTTCAATTTCT-TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
125981369 CCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTC-AGATTCTGTTTTC
190 CCTC-GGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAG-TTCTG-TTTC
125981423 -AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
* *
125981487 TTCTGTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGATGTGAGTTGAGCTTTTTA-ATTT
66 TTCTG-----TTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA--T
* * * * *
125981551 CTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC--AAAAATCAACTCATATTGCAAGA
121 C-AC-ACA-CTGAGGT-A-T-TTTTCAATTTCT-TTTTTCAAAAAAATCAACTCATATTGCGAGA
* * * * **
125981613 GGTGAGTTGAACCTTCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTC
179 GGTGAGTTGAGCC-TCGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTGTTTC
*
125981677 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
125981742 TTCTGTTTTT
66 TTCTGTTTTT
125981752 AATGTCTGTT
Statistics
Matches: 493, Mismatches: 54, Indels: 47
0.83 0.09 0.08
Matches are distributed among these distances:
243 34 0.07
244 68 0.14
245 68 0.14
246 1 0.00
247 11 0.02
249 27 0.05
250 108 0.22
251 1 0.00
252 3 0.01
253 2 0.00
254 5 0.01
255 138 0.28
256 9 0.02
257 14 0.03
258 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (241 bp):
AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGA
GGTATTTTTCAATTTCTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
TCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTGTTTC
Found at i:125981558 original size:30 final size:30
Alignment explanation
Indices: 125981522--125981583 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
125981512 CAACTCATAT
125981522 TGCGAGA-TGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGT-TGAGTTGAGTC-TTTTAATTTC
125981552 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
125981582 TG
1 TG
125981584 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
30 28 0.93
31 2 0.07
ACGTcount: A:0.19, C:0.10, G:0.27, T:0.44
Consensus pattern (30 bp):
TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
Found at i:125982863 original size:17 final size:17
Alignment explanation
Indices: 125982843--125982875 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
125982833 GGCGGTGGCC
*
125982843 GGCGGTGGCCGACGATG
1 GGCGGCGGCCGACGATG
125982860 GGCGGCGGCCGACGAT
1 GGCGGCGGCCGACGAT
125982876 CGGCCGGTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.27, G:0.52, T:0.09
Consensus pattern (17 bp):
GGCGGCGGCCGACGATG
Found at i:125986508 original size:26 final size:26
Alignment explanation
Indices: 125986479--125986544 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
125986469 TCTTAAACAA
*
125986479 ACTTTTCAAAAGTATTTCTTAAAATC
1 ACTTTTCAAAAGTATTTCTTAAAAGC
* *
125986505 ACTTTTCCAAAA-CATTTTTTAAAAGC
1 ACTTTT-CAAAAGTATTTCTTAAAAGC
*
125986531 ACTTCTCAAAAGTA
1 ACTTTTCAAAAGTA
125986545 ATGTTAAACA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
25 5 0.15
26 23 0.70
27 5 0.15
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.38
Consensus pattern (26 bp):
ACTTTTCAAAAGTATTTCTTAAAAGC
Found at i:125986983 original size:18 final size:18
Alignment explanation
Indices: 125986954--125987010 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
125986944 GCTCATATCT
*
125986954 TTATATTATATCCTTGGG
1 TTATATAATATCCTTGGG
* * **
125986972 TTATTTATTAT-CTTCCG
1 TTATATAATATCCTTGGG
*
125986989 TTGTATAATATCCTTGGG
1 TTATATAATATCCTTGGG
125987007 TTAT
1 TTAT
125987011 GAATTATATT
Statistics
Matches: 27, Mismatches: 11, Indels: 2
0.68 0.28 0.05
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.21, C:0.12, G:0.14, T:0.53
Consensus pattern (18 bp):
TTATATAATATCCTTGGG
Found at i:125991135 original size:26 final size:26
Alignment explanation
Indices: 125991106--125991189 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
125991096 TGATACAAAT
*
125991106 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
125991132 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
125991158 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
125991184 TGATAA
1 TGATAA
125991190 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:125993668 original size:2 final size:2
Alignment explanation
Indices: 125993620--125993650 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
125993610 AATATATGCC
125993620 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
125993651 GTTAAAGATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:125993839 original size:25 final size:24
Alignment explanation
Indices: 125993805--125993880 Score: 66
Period size: 25 Copynumber: 3.1 Consensus size: 24
125993795 ACAGTAAGAA
*
125993805 ATATACAATACATA-ACATTAAAAAT
1 ATATATAATA-ATATACA-TAAAAAT
*
125993830 ATATATAATAATATACATAAATAT
1 ATATATAATAATATACATAAAAAT
* *
125993854 ATAATATATATATTATA-ATAATAAT
1 AT-ATATA-ATAATATACATAAAAAT
125993879 AT
1 AT
125993881 GAAAAAGAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
24 11 0.26
25 25 0.58
26 7 0.16
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (24 bp):
ATATATAATAATATACATAAAAAT
Found at i:125993866 original size:31 final size:30
Alignment explanation
Indices: 125993812--125993873 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 30
125993802 GAAATATACA
125993812 ATACATAACATTAAAAATATATATAATAAT
1 ATACATAACATTAAAAATATATATAATAAT
* *
125993842 ATACATAA-ATATATAATATATATATTATAAT
1 ATACATAACAT-TA-AAAATATATATAATAAT
125993873 A
1 A
125993874 ATAATATGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 2 0.07
30 10 0.36
31 16 0.57
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (30 bp):
ATACATAACATTAAAAATATATATAATAAT
Found at i:125993877 original size:20 final size:19
Alignment explanation
Indices: 125993828--125993880 Score: 58
Period size: 17 Copynumber: 2.9 Consensus size: 19
125993818 AACATTAAAA
125993828 ATATAT-ATAATAATATAC
1 ATATATAATAATAATATAC
* *
125993846 ATAAAT-AT-ATAATATAT
1 ATATATAATAATAATATAC
125993863 ATATTATAATAATAATAT
1 ATA-TATAATAATAATAT
125993881 GAAAAAGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 11 0.38
18 9 0.31
19 2 0.07
20 7 0.24
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (19 bp):
ATATATAATAATAATATAC
Found at i:125994662 original size:27 final size:29
Alignment explanation
Indices: 125994632--125994690 Score: 70
Period size: 27 Copynumber: 2.1 Consensus size: 29
125994622 TCATTTGAGA
125994632 AGGGGA-AGAAAAAAAAGAAGAGA-GGAG
1 AGGGGAGAGAAAAAAAAGAAGAGAGGGAG
* **
125994659 A-GGGAGAGAAAAGAAAGGGGAGAGGGAG
1 AGGGGAGAGAAAAAAAAGAAGAGAGGGAG
125994687 AGGG
1 AGGG
125994691 AGCTCCGGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
26 4 0.15
27 15 0.58
28 5 0.19
29 2 0.08
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (29 bp):
AGGGGAGAGAAAAAAAAGAAGAGAGGGAG
Found at i:125994687 original size:20 final size:23
Alignment explanation
Indices: 125994644--125994688 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
125994634 GGGAAGAAAA
125994644 AAAAGAAGAGAGGAGAGGGAGAG
1 AAAAGAAGAGAGGAGAGGGAGAG
*
125994667 AAAAGAA-AGGGGAGAGGGAGAG
1 AAAAGAAGAGAGGAGAGGGAGAG
125994689 GGAGCTCCGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (23 bp):
AAAAGAAGAGAGGAGAGGGAGAG
Found at i:125994826 original size:16 final size:17
Alignment explanation
Indices: 125994801--125994835 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
125994791 AAAATCTGAT
*
125994801 TTTTTTTTATTTTT-TA
1 TTTTTATTATTTTTATA
125994817 TTTTTATTATTTTTATA
1 TTTTTATTATTTTTATA
125994834 TT
1 TT
125994836 CTAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTTATTATTTTTATA
Found at i:125997644 original size:29 final size:29
Alignment explanation
Indices: 125997611--125997669 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
125997601 GCAAGACAAT
* * *
125997611 TTTCAATTAGGTGTTTATCTACGTTATTA
1 TTTCAAATAGATGTTTATCTAAGTTATTA
125997640 TTTCAAATAGATGTTTATCTAAGTTATTA
1 TTTCAAATAGATGTTTATCTAAGTTATTA
125997669 T
1 T
125997670 AAATTTATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.29, C:0.08, G:0.12, T:0.51
Consensus pattern (29 bp):
TTTCAAATAGATGTTTATCTAAGTTATTA
Found at i:125997812 original size:17 final size:17
Alignment explanation
Indices: 125997780--125997813 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
125997770 AAGGGTATAA
* *
125997780 AATATTTTATTGTTTAT
1 AATATTTTAGTCTTTAT
125997797 AATATTTTAGTCTTTAT
1 AATATTTTAGTCTTTAT
125997814 TGAGTGAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.62
Consensus pattern (17 bp):
AATATTTTAGTCTTTAT
Found at i:125998047 original size:35 final size:35
Alignment explanation
Indices: 125998001--125998087 Score: 156
Period size: 35 Copynumber: 2.5 Consensus size: 35
125997991 TATATTCTTG
*
125998001 GTGATAATTATGTCATATTCTAAGTATGTAAATTA
1 GTGATAATTATGTCACATTCTAAGTATGTAAATTA
*
125998036 GTGATAATTATGTCACATTCTTAGTATGTAAATTA
1 GTGATAATTATGTCACATTCTAAGTATGTAAATTA
125998071 GTGATAATTATGTCACA
1 GTGATAATTATGTCACA
125998088 CTCCTAATAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (35 bp):
GTGATAATTATGTCACATTCTAAGTATGTAAATTA
Found at i:126001679 original size:23 final size:23
Alignment explanation
Indices: 126001653--126001699 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
126001643 ATTTTGCCAC
126001653 TAAAATTAAATTTTTTATTGAAT
1 TAAAATTAAATTTTTTATTGAAT
126001676 TAAAATTAAATTTTTTATTGAAT
1 TAAAATTAAATTTTTTATTGAAT
126001699 T
1 T
126001700 TTTCTATTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
TAAAATTAAATTTTTTATTGAAT
Found at i:126002947 original size:10 final size:9
Alignment explanation
Indices: 126002934--126003006 Score: 58
Period size: 9 Copynumber: 7.8 Consensus size: 9
126002924 AAAAAAATAA
126002934 AAAATATTTT
1 AAAA-ATTTT
*
126002944 AAAAAGTTAT
1 AAAAA-TTTT
*
126002954 AAAAATATT
1 AAAAATTTT
*
126002963 AAAAATTAT
1 AAAAATTTT
126002972 AAAAATTATT
1 AAAAATT-TT
*
126002982 -AAAATTATA
1 AAAAATT-TT
*
126002991 AAAAAATTT
1 AAAAATTTT
126003000 AAAAATT
1 AAAAATT
126003007 ATTGTATCTT
Statistics
Matches: 50, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
9 32 0.64
10 18 0.36
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (9 bp):
AAAAATTTT
Found at i:126002966 original size:18 final size:18
Alignment explanation
Indices: 126002942--126003008 Score: 91
Period size: 18 Copynumber: 3.6 Consensus size: 18
126002932 AAAAAATATT
126002942 TTAAAAAGTTATAAAAATA
1 TTAAAAA-TTATAAAAATA
126002961 TTAAAAATTATAAAAATTA
1 TTAAAAATTATAAAAA-TA
*
126002980 TT-AAAATTATAAAAAAA
1 TTAAAAATTATAAAAATA
126002997 TTTAAAAATTAT
1 -TTAAAAATTAT
126003009 TGTATCTTGA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
17 1 0.02
18 24 0.55
19 19 0.43
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (18 bp):
TTAAAAATTATAAAAATA
Found at i:126002974 original size:28 final size:26
Alignment explanation
Indices: 126002926--126003008 Score: 87
Period size: 28 Copynumber: 3.0 Consensus size: 26
126002916 TCATATGGAA
126002926 AAAAATA-AAAAATATTTTAAAAAGTTAT
1 AAAAATATAAAAA-A-TTTAAAAA-TTAT
*
126002954 AAAAATATTAAAAATTATAAAAATTATT
1 AAAAATATAAAAAATT-TAAAAATTA-T
*
126002982 AAAATTATAAAAAAATTTAAAAATTAT
1 AAAAATAT-AAAAAATTTAAAAATTAT
126003009 TGTATCTTGA
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
27 6 0.12
28 31 0.65
29 11 0.23
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (26 bp):
AAAAATATAAAAAATTTAAAAATTAT
Found at i:126003005 original size:19 final size:19
Alignment explanation
Indices: 126002930--126003008 Score: 83
Period size: 19 Copynumber: 4.1 Consensus size: 19
126002920 ATGGAAAAAA
126002930 ATAAAAAATATTTTAAAAAGTT
1 ATAAAAAA-A-TTTAAAAA-TT
*
126002952 ATAAAAATA-TTAAAAATT
1 ATAAAAAAATTTAAAAATT
*
126002970 AT--AAAAATTATTAAAATT
1 ATAAAAAAATT-TAAAAATT
126002988 ATAAAAAAATTTAAAAATT
1 ATAAAAAAATTTAAAAATT
126003007 AT
1 AT
126003009 TGTATCTTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
16 4 0.08
17 1 0.02
18 13 0.27
19 16 0.33
20 7 0.14
21 1 0.02
22 7 0.14
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.35
Consensus pattern (19 bp):
ATAAAAAAATTTAAAAATT
Found at i:126003327 original size:30 final size:29
Alignment explanation
Indices: 126003291--126003438 Score: 133
Period size: 30 Copynumber: 5.1 Consensus size: 29
126003281 AAAAATAAAA
126003291 AAATTACATTTTGACCCCTAAACTTTTTGT
1 AAATTACATTTTGACCCCTAAACTTTTT-T
* **
126003321 AAATTACATTTTAACCTTTAAACTTTTCTT
1 AAATTACATTTTGACCCCTAAACTTTT-TT
* * *
126003351 AAATTTCATTTTGACCTCTAAACTTTATAT
1 AAATTACATTTTGACCCCTAAACTTT-TTT
* * * *
126003381 AAATTTCACTTT-AACCCTAAACTTTCCTT
1 AAATTACATTTTGACCCCTAAACTTT-TTT
*
126003410 AAATTACAATTTGA-CCCT-AA-TTTTTT
1 AAATTACATTTTGACCCCTAAACTTTTTT
126003436 AAA
1 AAA
126003439 AATTACACTT
Statistics
Matches: 99, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
26 5 0.05
27 3 0.03
28 2 0.02
29 26 0.26
30 61 0.62
31 2 0.02
ACGTcount: A:0.34, C:0.19, G:0.03, T:0.45
Consensus pattern (29 bp):
AAATTACATTTTGACCCCTAAACTTTTTT
Found at i:126003384 original size:60 final size:58
Alignment explanation
Indices: 126003291--126003458 Score: 194
Period size: 60 Copynumber: 2.9 Consensus size: 58
126003281 AAAAATAAAA
* * * * *
126003291 AAATTACATTTTGACCCCTAAACTTTTTGTAAATTACATTTTAACCTTTAAACTTTTCTT
1 AAATTACATTTTGA-CCCTAAACTTTATATAAATTACACTTTAACC-CTAAACTTTCCTT
* *
126003351 AAATTTCATTTTGACCTCTAAACTTTATATAAATTTCACTTTAACCCTAAACTTTCCTT
1 AAATTACATTTTGACC-CTAAACTTTATATAAATTACACTTTAACCCTAAACTTTCCTT
* * * * *
126003410 AAATTACAATTTGACCCT-AATTTTTTAAAAATTACACTTTAGCCCTAAA
1 AAATTACATTTTGACCCTAAACTTTATATAAATTACACTTTAACCCTAAA
126003459 AGTTTTGCTA
Statistics
Matches: 93, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
57 26 0.28
58 2 0.02
59 27 0.29
60 38 0.41
ACGTcount: A:0.35, C:0.20, G:0.03, T:0.43
Consensus pattern (58 bp):
AAATTACATTTTGACCCTAAACTTTATATAAATTACACTTTAACCCTAAACTTTCCTT
Found at i:126003412 original size:29 final size:29
Alignment explanation
Indices: 126003291--126003458 Score: 126
Period size: 30 Copynumber: 5.7 Consensus size: 29
126003281 AAAAATAAAA
* * *
126003291 AAATTACATTTTGACCCCTAAACTTTTTGT
1 AAATTACATTTT-AACCCTAAACTTTCTAT
*
126003321 AAATTACATTTTAACCTTTAAACTTTTCT-T
1 AAATTACATTTTAACC-CTAAAC-TTTCTAT
* * *
126003351 AAATTTCATTTTGACCTCTAAACTTTATAT
1 AAATTACATTTTAACC-CTAAACTTTCTAT
* *
126003381 AAATTTCACTTTAACCCTAAACTTTCCT-T
1 AAATTACATTTTAACCCTAAACTTT-CTAT
* * * * *
126003410 AAATTACAATTTGACCCT-AATTTTTTAA
1 AAATTACATTTTAACCCTAAACTTTCTAT
* *
126003438 AAATTACACTTTAGCCCTAAA
1 AAATTACATTTTAACCCTAAA
126003459 AGTTTTGCTA
Statistics
Matches: 113, Mismatches: 19, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
27 1 0.01
28 20 0.18
29 34 0.30
30 54 0.48
31 4 0.04
ACGTcount: A:0.35, C:0.20, G:0.03, T:0.43
Consensus pattern (29 bp):
AAATTACATTTTAACCCTAAACTTTCTAT
Found at i:126004068 original size:42 final size:40
Alignment explanation
Indices: 126004014--126004135 Score: 124
Period size: 37 Copynumber: 3.0 Consensus size: 40
126004004 TTGTCTTTAG
*
126004014 TGAAATGTTAAGTTAGTGTGATGGGTTAGTTTGTGTTGGGTT
1 TGAAATATTAAGTTAGTG-G-TGGGTTAGTTTGTGTTGGGTT
**
126004056 TGAAATATTAAGTTA---GTGGGTTAGTTTGTGTTGGACT
1 TGAAATATTAAGTTAGTGGTGGGTTAGTTTGTGTTGGGTT
* * *
126004093 TGGATTATTAAGTTAGTGGGCTGGGGTTGGTTTGTGTTGGGTT
1 TGAAATATTAAGTTAGT-GG-T-GGGTTAGTTTGTGTTGGGTT
126004136 GAAGTAATTT
Statistics
Matches: 66, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
37 32 0.48
38 1 0.02
41 1 0.02
42 15 0.23
43 17 0.26
ACGTcount: A:0.18, C:0.02, G:0.36, T:0.44
Consensus pattern (40 bp):
TGAAATATTAAGTTAGTGGTGGGTTAGTTTGTGTTGGGTT
Found at i:126004487 original size:40 final size:38
Alignment explanation
Indices: 126004443--126004519 Score: 100
Period size: 40 Copynumber: 2.0 Consensus size: 38
126004433 TATTATGTGC
126004443 ATATTTCATATATATATCATGTATATATATTTTTAATATT
1 ATATTTCATATATATATCATG--TATATATTTTTAATATT
** * *
126004483 ATATTTTTTATGTATATTATGTATATATTTTTAATAT
1 ATATTTCATATATATATCATGTATATATTTTTAATAT
126004520 CACATTATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 16 0.48
40 17 0.52
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.58
Consensus pattern (38 bp):
ATATTTCATATATATATCATGTATATATTTTTAATATT
Found at i:126005000 original size:24 final size:23
Alignment explanation
Indices: 126004914--126005100 Score: 99
Period size: 25 Copynumber: 8.0 Consensus size: 23
126004904 TAATATTGTA
*
126004914 TTTTATATA-TATCATGTATATAT
1 TTTTA-ATACTATTATGTATATAT
* *
126004937 TTCTAATACTA-TA--T-TACAT
1 TTTTAATACTATTATGTATATAT
*
126004956 TTTTACATATTATCTTATGTATATAT
1 TTTTA-ATACTA--TTATGTATATAT
126004982 TTTTAATAACTATTATGTATATAT
1 TTTTAAT-ACTATTATGTATATAT
*
126005006 TTTTAACGCTA-TATTATGTACATAT
1 TTTTAA---TACTATTATGTATATAT
* *
126005031 TTTTAATAC---TATGTATACACC
1 TTTTAATACTATTATGTATATA-T
* *
126005052 TTTTATTCCTATTAT-TACGTATAT
1 TTTTAATACTATTATGTA--TATAT
126005076 ATTTTAATAC-ATATATGTATATAT
1 -TTTTAATACTAT-TATGTATATAT
126005100 T
1 T
126005101 CATATATCAT
Statistics
Matches: 125, Mismatches: 17, Indels: 44
0.67 0.09 0.24
Matches are distributed among these distances:
19 8 0.06
20 14 0.11
21 7 0.06
22 6 0.05
23 11 0.09
24 28 0.22
25 35 0.28
26 15 0.12
27 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.04, T:0.52
Consensus pattern (23 bp):
TTTTAATACTATTATGTATATAT
Found at i:126005031 original size:94 final size:93
Alignment explanation
Indices: 126004921--126005100 Score: 215
Period size: 94 Copynumber: 1.9 Consensus size: 93
126004911 GTATTTTATA
* *
126004921 TATATCATGTATATATTTCTAATACTATAT-TACA-TTTT-TACATATTATCTTATGTATATATT
1 TATATCATGTACATATTTCTAATACTATATATACACTTTTATACATATTA--TTACGTATATA-T
126004983 TTTAATA-ACTATTATGTATATATTTTTAACGC
63 TTTAATACA-TA-TATGTATATATTTTTAACGC
* * * * *
126005015 TATATTATGTACATATTTTTAATACTATGTATACACCTTTTATTCCTATTATTACGTATATATTT
1 TATATCATGTACATATTTCTAATACTATATATACA-CTTTTATACATATTATTACGTATATATTT
126005080 TAATACATATATGTATATATT
65 TAATACATATATGTATATATT
126005101 CATATATCAT
Statistics
Matches: 74, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
94 38 0.51
95 14 0.19
96 11 0.15
97 4 0.05
98 7 0.09
ACGTcount: A:0.34, C:0.10, G:0.04, T:0.52
Consensus pattern (93 bp):
TATATCATGTACATATTTCTAATACTATATATACACTTTTATACATATTATTACGTATATATTTT
AATACATATATGTATATATTTTTAACGC
Found at i:126017484 original size:78 final size:78
Alignment explanation
Indices: 126017375--126017846 Score: 567
Period size: 78 Copynumber: 6.0 Consensus size: 78
126017365 TTTTTCCAAA
* *
126017375 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACACGCCGAGGTATTTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTTCA
126017440 ATTTCTGTTTTTC
66 ATTTCTGTTTTTC
* *
126017453 AAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGGCTCGGGTCACATGCCGAGGTATTTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTTCA
*
126017518 ATTTCTGTCTTTC
66 ATTTCTGTTTTTC
* * * * * *
126017531 -AAAAAATTAACTCATATTACGAGATGCGAGTTGAGGCTCGGGTCACATGCCAAGGTATTTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTTCA
* *
126017595 ATTTCTGTCTTTA
66 ATTTCTGTTTTTC
*
126017608 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTATTTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTTCA
126017673 ATTTCTGTTTTTC
66 ATTTCTGTTTTTC
* * * * *
126017686 AAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCATACGCTGAGGTA-TT
1 ----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTT
*
126017750 TTCAATTTTTTGCTTTTTC
62 TTCAA-TTTCTG-TTTTTC
* * * * * * * * **
126017769 --AAAGATCAACTCATAATCCGAGAGGTGAGTTGAACTTCAGGTCGCATCCCGAACTA-TTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTTCA
*
126017831 ATTTTTTGTTTTTC
66 A-TTTCTGTTTTTC
126017845 AA
1 AA
126017847 TAAAGAATAA
Statistics
Matches: 346, Mismatches: 39, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
76 6 0.02
77 129 0.37
78 141 0.41
81 7 0.02
82 57 0.16
83 6 0.02
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (78 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTTCA
ATTTCTGTTTTTC
Found at i:126017562 original size:155 final size:156
Alignment explanation
Indices: 126017375--126017801 Score: 574
Period size: 155 Copynumber: 2.7 Consensus size: 156
126017365 TTTTTCCAAA
*
126017375 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACACGCCGAGGTATTTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTTCA
* *
126017440 ATTTCTGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGGCTCGGGTCACATGCC
66 ATTTCTGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATACC
126017505 GAGGTATTTTTCAATTTCTGTCTTTC
131 GAGGTATTTTTCAATTTCTGTCTTTC
* * * * * * *
126017531 -AAAAAATTAACTCATATTACGAGATGCGAGTTGAGGCTCGGGTCACATGCCAAGGTATTTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTTCA
* * *
126017595 ATTTCTGTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACC
66 ATTTCTGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATACC
*
126017660 GAGGTATTTTTCAATTTCTGTTTTTC
131 GAGGTATTTTTCAATTTCTGTCTTTC
* * * *
126017686 AAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCATACGCTGAGGTA-TT
1 ----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTT
* * * *
126017750 TTCAATTTTTTGCTTTTTC--AAAGATCAACTCATAATCCGAGAGGTGAGTTGA
62 TTCAA-TTTCTG-TTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGA
126017802 ACTTCAGGTC
Statistics
Matches: 233, Mismatches: 31, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
155 141 0.61
159 37 0.16
160 51 0.22
161 4 0.02
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (156 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTTCA
ATTTCTGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATACC
GAGGTATTTTTCAATTTCTGTCTTTC
Found at i:126018070 original size:30 final size:29
Alignment explanation
Indices: 126018030--126018194 Score: 145
Period size: 30 Copynumber: 5.6 Consensus size: 29
126018020 AAAAATAAAA
*
126018030 AAATTACATTTTGACCCCTAAACTTTTTAT
1 AAATTACATTTTAACCCCTAAACTTTTT-T
* * *
126018060 AAATTGCATTTTAACCACTAAACTTTTCCT
1 AAATTACATTTTAACCCCTAAACTTTT-TT
* *
126018090 AAATTTCATTTTAACCCCTAAAATTTATTT
1 AAATTACATTTTAACCCCTAAACTTT-TTT
* * * *
126018120 AAATTTCACTTTAACCCTTAAACTTTCCTT
1 AAATTACATTTTAACCCCTAAACTTT-TTT
* * *
126018150 AAATTACAATTTGA-CCCTAAA-TTTTTAA
1 AAATTACATTTTAACCCCTAAACTTTTT-T
*
126018178 AAATTACAATTTAACCC
1 AAATTACATTTTAACCC
126018195 TGAAAGTTTT
Statistics
Matches: 111, Mismatches: 20, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
27 1 0.01
28 16 0.14
29 8 0.07
30 85 0.77
31 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.02, T:0.41
Consensus pattern (29 bp):
AAATTACATTTTAACCCCTAAACTTTTTT
Found at i:126018107 original size:60 final size:59
Alignment explanation
Indices: 126018030--126018195 Score: 187
Period size: 60 Copynumber: 2.8 Consensus size: 59
126018020 AAAAATAAAA
* *
126018030 AAATTACATTTTGACCCCTAAACTTTTTATAAATTGCATTTTAACCAC-TAAACTTTTCC-T
1 AAATTACATTTTGACCCCTAAA-TTTTTATAAATTACAATTTAACC-CTTAAAC-TTTCCTT
* * * *
126018090 AAATTTCATTTTAACCCCTAAAATTTATT-TAAATTTCACTTTAACCCTTAAACTTTCCTT
1 AAATTACATTTTGACCCCT-AAATTT-TTATAAATTACAATTTAACCCTTAAACTTTCCTT
* *
126018150 AAATTACAATTTGA-CCCTAAATTTTTAAAAATTACAATTTAACCCT
1 AAATTACATTTTGACCCCTAAATTTTTATAAATTACAATTTAACCCT
126018196 GAAAGTTTTG
Statistics
Matches: 91, Mismatches: 10, Indels: 12
0.81 0.09 0.11
Matches are distributed among these distances:
57 2 0.02
58 22 0.24
59 10 0.11
60 52 0.57
61 5 0.05
ACGTcount: A:0.36, C:0.20, G:0.02, T:0.42
Consensus pattern (59 bp):
AAATTACATTTTGACCCCTAAATTTTTATAAATTACAATTTAACCCTTAAACTTTCCTT
Found at i:126018184 original size:28 final size:29
Alignment explanation
Indices: 126018150--126018204 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
126018140 AACTTTCCTT
* *
126018150 AAATTACAATTTGACCCT-AAATTTTTAA
1 AAATTACAATTTAACCCTGAAAGTTTTAA
126018178 AAATTACAATTTAACCCTGAAAGTTTT
1 AAATTACAATTTAACCCTGAAAGTTTT
126018205 GCTACATTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 17 0.71
29 7 0.29
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (29 bp):
AAATTACAATTTAACCCTGAAAGTTTTAA
Found at i:126018780 original size:40 final size:41
Alignment explanation
Indices: 126018736--126018814 Score: 115
Period size: 40 Copynumber: 1.9 Consensus size: 41
126018726 TTGTTTGTTG
*
126018736 TGGGTTAATTTGTGTTCGG-TGAAATGTTAAGTTAGTGAGA
1 TGGGTTAATTTGTGTTCGGTTGAAATATTAAGTTAGTGAGA
* *
126018776 TGGGTTAGTTTGTGTTGGGTTTGAAATATTAAGTTAGTG
1 TGGGTTAATTTGTGTTCGG-TTGAAATATTAAGTTAGTG
126018815 GGTTAGTCTG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 17 0.50
42 17 0.50
ACGTcount: A:0.23, C:0.01, G:0.33, T:0.43
Consensus pattern (41 bp):
TGGGTTAATTTGTGTTCGGTTGAAATATTAAGTTAGTGAGA
Found at i:126018812 original size:42 final size:41
Alignment explanation
Indices: 126018735--126018876 Score: 143
Period size: 37 Copynumber: 3.5 Consensus size: 41
126018725 CTTGTTTGTT
* * *
126018735 GTGGGTTAATTTGTGTTCGG--TGAAATGTTAAGTTAGTGA
1 GTGGGTTAGTTTGTGTTGGGTTTGAAATATTAAGTTAGTGA
126018774 GATGGGTTAGTTTGTGTTGGGTTTGAAATATTAAG-T--T-A
1 G-TGGGTTAGTTTGTGTTGGGTTTGAAATATTAAGTTAGTGA
* * * * *
126018812 GTGGGTTAGTCTGTGTTGGGCTTGGATTATTAAGTTAGTGG
1 GTGGGTTAGTTTGTGTTGGGTTTGAAATATTAAGTTAGTGA
126018853 GCTGGGGTTAGTTTGTGTTGGGTT
1 G-T-GGGTTAGTTTGTGTTGGGTT
126018877 AAAGTAATTT
Statistics
Matches: 84, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
37 29 0.35
38 3 0.04
39 2 0.02
40 18 0.21
41 2 0.02
42 12 0.14
43 18 0.21
ACGTcount: A:0.18, C:0.03, G:0.37, T:0.43
Consensus pattern (41 bp):
GTGGGTTAGTTTGTGTTGGGTTTGAAATATTAAGTTAGTGA
Found at i:126019243 original size:18 final size:19
Alignment explanation
Indices: 126019203--126019246 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 19
126019193 TATATATATC
126019203 ATGTATA-TATATATTTTT
1 ATGTATATTATATATTTTT
126019221 A---ATATTATAT-TTTTT
1 ATGTATATTATATATTTTT
126019236 ATGTATATTAT
1 ATGTATATTAT
126019247 GTATATATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 8
0.73 0.00 0.27
Matches are distributed among these distances:
15 9 0.41
16 5 0.23
18 8 0.36
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (19 bp):
ATGTATATTATATATTTTT
Found at i:126019788 original size:25 final size:25
Alignment explanation
Indices: 126019699--126019788 Score: 94
Period size: 25 Copynumber: 3.6 Consensus size: 25
126019689 GCTATATTAC
* *
126019699 ATTTTTACATATTATCTTATGTATAT
1 ATTTTTA-ATACTATATTATGTATAT
126019725 ATTTTTTAATA--ACTATTATGTATAT
1 A-TTTTTAATACTA-TATTATGTATAT
** *
126019750 ATTTTTAACGCTATATTATGTACAT
1 ATTTTTAATACTATATTATGTATAT
126019775 ATTTTTAATACTAT
1 ATTTTTAATACTAT
126019789 GTATACACCT
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
24 8 0.15
25 35 0.65
26 5 0.09
27 6 0.11
ACGTcount: A:0.33, C:0.08, G:0.04, T:0.54
Consensus pattern (25 bp):
ATTTTTAATACTATATTATGTATAT
Found at i:126021084 original size:17 final size:18
Alignment explanation
Indices: 126021062--126021095 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
126021052 ACTAATTATA
126021062 ATTA-TTTTTATTGATTT
1 ATTATTTTTTATTGATTT
126021079 ATTATTTTTTATTGATT
1 ATTATTTTTTATTGATT
126021096 GAATTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (18 bp):
ATTATTTTTTATTGATTT
Done.