Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 405 of 438
Found at i:126022566 original size:18 final size:18
Alignment explanation
Indices: 126022552--126022590 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
126022542 GATTTTTCAG
*
126022552 ATTTTTTATATTTTTAAA
1 ATTTTTAATATTTTTAAA
*
126022570 ATTTTTAATATTTTTTAA
1 ATTTTTAATATTTTTAAA
126022588 ATT
1 ATT
126022591 ATTTTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
ATTTTTAATATTTTTAAA
Found at i:126023703 original size:2 final size:2
Alignment explanation
Indices: 126023696--126023735 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
126023686 ACCTCGATGG
*
126023696 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
126023736 CAATAGTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:126023815 original size:53 final size:55
Alignment explanation
Indices: 126023750--126023908 Score: 153
Period size: 61 Copynumber: 2.8 Consensus size: 55
126023740 AGTAATTACG
* * *
126023750 TAGGAA-CTAAATTGTTAAAAGATAACATCCCAT-T-ATATCTTATAATATCCCAT
1 TAGGAATC-AAATTGCTAAAAGATAACATCCCATATAATATCCTATAACATCCCAT
* * *
126023803 TAGGAATCAAATTGCTAAAAAATAATATTCCATCTCATAATAATATCCTATAACATCTCAT
1 TAGGAATCAAATTGCTAAAAGAT-A-A---CATCCCAT-ATAATATCCTATAACATCCCAT
* *
126023864 TAGGAATTAAATTGCTAAAAGATAATATCCCATAATAATATCCTA
1 TAGGAATCAAATTGCTAAAAGATAACATCCCAT-ATAATATCCTA
126023909 ACACCCCCTC
Statistics
Matches: 87, Mismatches: 10, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
53 19 0.22
54 2 0.02
55 1 0.01
56 18 0.21
58 7 0.08
59 1 0.01
60 2 0.02
61 37 0.43
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (55 bp):
TAGGAATCAAATTGCTAAAAGATAACATCCCATATAATATCCTATAACATCCCAT
Found at i:126025897 original size:35 final size:35
Alignment explanation
Indices: 126025858--126025974 Score: 209
Period size: 35 Copynumber: 3.4 Consensus size: 35
126025848 ACTTGCCTCT
126025858 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
126025893 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
126025928 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA-
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
* *
126025962 TCACACACTCCCA
1 TCCCACTCTCCCA
126025975 CCGCACCTGC
Statistics
Matches: 80, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
34 11 0.14
35 69 0.86
ACGTcount: A:0.19, C:0.51, G:0.10, T:0.20
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
Found at i:126026374 original size:2 final size:2
Alignment explanation
Indices: 126026369--126026394 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
126026359 ATAATAAAAA
126026369 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
126026395 TTTTTACCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:126026495 original size:11 final size:11
Alignment explanation
Indices: 126026479--126026512 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
126026469 CGGATTCCCT
126026479 TCCCTTCTCTC
1 TCCCTTCTCTC
126026490 TCCCTTCTCTC
1 TCCCTTCTCTC
126026501 TTCCC-TCTCTC
1 -TCCCTTCTCTC
126026512 T
1 T
126026513 TCTTTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 17 0.77
12 4 0.18
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (11 bp):
TCCCTTCTCTC
Found at i:126026508 original size:18 final size:17
Alignment explanation
Indices: 126026474--126026515 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
126026464 CTGGCCGGAT
*
126026474 TCCCTTC-CCTTCTCTC
1 TCCCTTCTCCTTCCCTC
126026490 TCCCTTCTCTCTTCCCTC
1 TCCCTTCTC-CTTCCCTC
*
126026508 TCTCTTCT
1 TCCCTTCT
126026516 TTTTTTTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 7 0.32
17 1 0.05
18 14 0.64
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (17 bp):
TCCCTTCTCCTTCCCTC
Found at i:126026513 original size:11 final size:11
Alignment explanation
Indices: 126026477--126026514 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
126026467 GCCGGATTCC
126026477 CTTCCCT-TCT
1 CTTCCCTCTCT
126026487 CTCTCCCTTCTCT
1 CT-TCCC-TCTCT
126026500 CTTCCCTCTCT
1 CTTCCCTCTCT
126026511 CTTC
1 CTTC
126026515 TTTTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 2 0.08
11 13 0.52
12 5 0.20
13 5 0.20
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (11 bp):
CTTCCCTCTCT
Found at i:126026968 original size:3 final size:3
Alignment explanation
Indices: 126026960--126027198 Score: 132
Period size: 3 Copynumber: 77.0 Consensus size: 3
126026950 TGCATTTCAA
126026960 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
126027008 TAT TAT TAT TAT TGT TAT TGA- AAT ACAT TAGT GTAT ATCT TCAT GTAT
1 TAT TAT TAT TAT TAT TAT T-AT TAT -TAT TA-T -TAT -TAT T-AT -TAT
* * * * *
126027056 GTA- TAT ATAT ATAT GTAG TAA TGT T-T CTAT TAC T-T TAT T-T TAA
1 -TAT TAT -TAT -TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
* * ** * *
126027099 TAT TTT TAT TAT AAT GGCT T-T TGT GT-T TCAA TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT -TAT TAT TAT -TAT T-AT TAT TAT TAT TAT TAT
* * *
126027145 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TAA TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
126027193 TAT TAT
1 TAT TAT
126027199 ATATCCTTGT
Statistics
Matches: 187, Mismatches: 31, Indels: 36
0.74 0.12 0.14
Matches are distributed among these distances:
2 10 0.05
3 148 0.79
4 26 0.14
5 3 0.02
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:126027406 original size:22 final size:23
Alignment explanation
Indices: 126027378--126027432 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
126027368 AATTTTTTTA
126027378 ATATATATTATATGAATA-ATTT
1 ATATATATTATATGAATATATTT
* *
126027400 ATATATAATATTATGTATATATTT
1 ATATATATTA-TATGAATATATTT
126027424 -TA-ATATTAT
1 ATATATATTAT
126027433 CAGTTATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 1 0.04
22 14 0.50
23 9 0.32
24 4 0.14
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
ATATATATTATATGAATATATTT
Found at i:126027473 original size:33 final size:30
Alignment explanation
Indices: 126027415--126027487 Score: 92
Period size: 33 Copynumber: 2.3 Consensus size: 30
126027405 TAATATTATG
*
126027415 TATATATTTTAATATTATCAGTTATATATA
1 TATATATTTTAATACTATCAGTTATATATA
* *
126027445 CTATATGATTTCTAATACTATTATTTATATATA
1 -TATAT-ATTT-TAATACTATCAGTTATATATA
126027478 TATATATTTT
1 TATATATTTT
126027488 CTTAGTACCA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
30 1 0.03
31 9 0.24
32 9 0.24
33 18 0.49
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (30 bp):
TATATATTTTAATACTATCAGTTATATATA
Found at i:126030344 original size:17 final size:17
Alignment explanation
Indices: 126030322--126030359 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
126030312 CCTAAACTCA
*
126030322 AAAATTACAAACAACCC-
1 AAAATTA-AAAAAACCCT
126030339 AAAATTAAAAAAACCCT
1 AAAATTAAAAAAACCCT
126030356 AAAA
1 AAAA
126030360 GCCCAATGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.66, C:0.21, G:0.00, T:0.13
Consensus pattern (17 bp):
AAAATTAAAAAAACCCT
Found at i:126031653 original size:19 final size:20
Alignment explanation
Indices: 126031620--126031668 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
126031610 ATAGATTCTT
126031620 TTTATTATTTGTTTA-TTTA
1 TTTATTATTTGTTTACTTTA
*
126031639 TTTATTATTCT-TTTACTTTT
1 TTTATTATT-TGTTTACTTTA
*
126031659 TTTAATATTT
1 TTTATTATTT
126031669 AAAATTGGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.73
Consensus pattern (20 bp):
TTTATTATTTGTTTACTTTA
Found at i:126031714 original size:10 final size:11
Alignment explanation
Indices: 126031677--126031728 Score: 52
Period size: 12 Copynumber: 4.6 Consensus size: 11
126031667 TTAAAATTGG
*
126031677 TTTATTTCCTT
1 TTTATTTACTT
*
126031688 TTTATTGTACAT
1 TTTATT-TACTT
126031700 TTTATTT-CTT
1 TTTATTTACTT
*
126031710 TTTATTTATTT
1 TTTATTTACTT
126031721 ATTTATTT
1 -TTTATTT
126031729 TTCTTTACCT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
10 9 0.26
11 9 0.26
12 16 0.47
ACGTcount: A:0.17, C:0.08, G:0.02, T:0.73
Consensus pattern (11 bp):
TTTATTTACTT
Found at i:126031889 original size:3 final size:3
Alignment explanation
Indices: 126031789--126031871 Score: 73
Period size: 3 Copynumber: 28.0 Consensus size: 3
126031779 TTTACTTTTA
*
126031789 TAT TAT TAT TAT CAT TAT TAT TAT TAT TAT TAT TAT T-T T-T TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* ** * *
126031835 GCA- TAT TGG TAT TAT GATT TAT TGT TAT TAT TAT TAT
1 -TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
126031872 ACTTTCATAT
Statistics
Matches: 64, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
2 5 0.08
3 56 0.88
4 3 0.05
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:126034793 original size:12 final size:12
Alignment explanation
Indices: 126034776--126034801 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
126034766 TGGTTGCATA
126034776 AGCTATGTATAT
1 AGCTATGTATAT
126034788 AGCTATGTATAT
1 AGCTATGTATAT
126034800 AG
1 AG
126034802 TCTCTACAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (12 bp):
AGCTATGTATAT
Found at i:126040138 original size:3 final size:3
Alignment explanation
Indices: 126040130--126040224 Score: 144
Period size: 3 Copynumber: 32.3 Consensus size: 3
126040120 ATTATAAGTA
126040130 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
126040178 AAT AAT AAAT AAT AAT AACT AA- AAT -AT AAT AAT AAT -AT AAT -AT
1 AAT AAT -AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT
126040221 AAT A
1 AAT A
126040225 GTTAAAAGTA
Statistics
Matches: 86, Mismatches: 0, Indels: 12
0.88 0.00 0.12
Matches are distributed among these distances:
2 8 0.09
3 72 0.84
4 6 0.07
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:126047689 original size:3 final size:3
Alignment explanation
Indices: 126047681--126047749 Score: 92
Period size: 3 Copynumber: 24.0 Consensus size: 3
126047671 ATTATAAGTA
*
126047681 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AATT ACT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
126047726 AAT -AT AAT AAT -AT AAT -AT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
126047750 TAAAAGTAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
2 8 0.14
3 49 0.83
4 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:126049515 original size:41 final size:42
Alignment explanation
Indices: 126049455--126049534 Score: 110
Period size: 41 Copynumber: 1.9 Consensus size: 42
126049445 ATTTTGAGTT
*
126049455 CACACGGCATGTCACACGGGCGT-GTGATCAGACCGTGTGAGA
1 CACACGGCATGTCACACGGGCATAGTGAT-AGACCGTGTGAGA
* *
126049497 CACACGGCTTG-CACACGGGCATATTGATAGACCGTGTG
1 CACACGGCATGTCACACGGGCATAGTGATAGACCGTGTG
126049535 TCCCTTGCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
41 20 0.59
42 14 0.41
ACGTcount: A:0.24, C:0.26, G:0.31, T:0.19
Consensus pattern (42 bp):
CACACGGCATGTCACACGGGCATAGTGATAGACCGTGTGAGA
Found at i:126057150 original size:2 final size:2
Alignment explanation
Indices: 126057143--126057183 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
126057133 TAATTATGCC
126057143 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
126057183 T
1 T
126057184 CGATAATGAC
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.05
2 35 0.95
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:126063235 original size:44 final size:44
Alignment explanation
Indices: 126063168--126063266 Score: 144
Period size: 44 Copynumber: 2.2 Consensus size: 44
126063158 AGATTCTTTG
* * * *
126063168 TCTTTGATTTGCTATTTGTCAATACAGAGATGCCAAATCTGCTA
1 TCTTTGATCTGCTATCTGCCAATACAGAGACGCCAAATCTGCTA
* *
126063212 TCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGTTA
1 TCTTTGATCTGCTATCTGCCAATACAGAGACGCCAAATCTGCTA
126063256 TCTTTGATCTG
1 TCTTTGATCTG
126063267 TTCCCTATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.37
Consensus pattern (44 bp):
TCTTTGATCTGCTATCTGCCAATACAGAGACGCCAAATCTGCTA
Found at i:126063291 original size:44 final size:44
Alignment explanation
Indices: 126063191--126063295 Score: 120
Period size: 44 Copynumber: 2.4 Consensus size: 44
126063181 ATTTGTCAAT
* * * *
126063191 ACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGCCAAT
1 ACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCCCTACAAAC
* * * *
126063235 ACAGAGACGCCAAATCTGTTATCTTTGATCTGTTCCCTATAAAC
1 ACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCCCTACAAAC
* *
126063279 ACAGGGGTGCCAAATCT
1 ACAGAGATGCCAAATCT
126063296 ACTTTTTCGA
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (44 bp):
ACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCCCTACAAAC
Found at i:126063850 original size:42 final size:43
Alignment explanation
Indices: 126063770--126063874 Score: 124
Period size: 42 Copynumber: 2.5 Consensus size: 43
126063760 CATCTTTGAT
* * * **
126063770 CTGTTTCCCTACTACTTA-GGGGTTAAGATCTGTAAATTCAGT
1 CTGTTACCCTACTGCTTAGGGGGGTAAGATCTGTAAATTCAAC
* * *
126063812 TTGTTACCCTGCTGCTTAGGGGGGTAAGATCTG-CAATTCAAC
1 CTGTTACCCTACTGCTTAGGGGGGTAAGATCTGTAAATTCAAC
126063854 CTGTTACCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGG
126063875 ATTTAAGGTT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 39 0.75
43 13 0.25
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.34
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGGGTAAGATCTGTAAATTCAAC
Found at i:126079140 original size:119 final size:119
Alignment explanation
Indices: 126078979--126079220 Score: 484
Period size: 119 Copynumber: 2.0 Consensus size: 119
126078969 TTATAATTGA
126078979 AGCTGAGAATTGTGTGAGGGGATAGTCATAGATACTATAGTTTGATCGAAAAGGCGTTGGTCCAC
1 AGCTGAGAATTGTGTGAGGGGATAGTCATAGATACTATAGTTTGATCGAAAAGGCGTTGGTCCAC
126079044 GATGGCCATAATTTGTGGTTGCTTTCCATTCCTAGGCTAGGCTGAAGCCACTTC
66 GATGGCCATAATTTGTGGTTGCTTTCCATTCCTAGGCTAGGCTGAAGCCACTTC
126079098 AGCTGAGAATTGTGTGAGGGGATAGTCATAGATACTATAGTTTGATCGAAAAGGCGTTGGTCCAC
1 AGCTGAGAATTGTGTGAGGGGATAGTCATAGATACTATAGTTTGATCGAAAAGGCGTTGGTCCAC
126079163 GATGGCCATAATTTGTGGTTGCTTTCCATTCCTAGGCTAGGCTGAAGCCACTTC
66 GATGGCCATAATTTGTGGTTGCTTTCCATTCCTAGGCTAGGCTGAAGCCACTTC
126079217 AGCT
1 AGCT
126079221 CATCATTATT
Statistics
Matches: 123, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
119 123 1.00
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (119 bp):
AGCTGAGAATTGTGTGAGGGGATAGTCATAGATACTATAGTTTGATCGAAAAGGCGTTGGTCCAC
GATGGCCATAATTTGTGGTTGCTTTCCATTCCTAGGCTAGGCTGAAGCCACTTC
Found at i:126080788 original size:29 final size:30
Alignment explanation
Indices: 126080747--126080804 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
126080737 ATTTTTTAAA
* * *
126080747 TTTCTAATCAATTCTAAAGAATTCTAAAAT
1 TTTCTAATAAATTATAAAAAATTCTAAAAT
*
126080777 TTTCTAA-AAATTATAAAAAATTTTAAAA
1 TTTCTAATAAATTATAAAAAATTCTAAAA
126080805 AGTATTTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.50, C:0.09, G:0.02, T:0.40
Consensus pattern (30 bp):
TTTCTAATAAATTATAAAAAATTCTAAAAT
Found at i:126080795 original size:20 final size:19
Alignment explanation
Indices: 126080758--126080805 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
126080748 TTCTAATCAA
* *
126080758 TTCTAAAGAATTCTAAAATT
1 TTCTAAA-AATTATAAAAAT
126080778 TTCTAAAAATTATAAAAAAT
1 TTCTAAAAATTAT-AAAAAT
126080798 TT-TAAAAA
1 TTCTAAAAA
126080806 GTATTTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.38
Consensus pattern (19 bp):
TTCTAAAAATTATAAAAAT
Found at i:126083461 original size:29 final size:29
Alignment explanation
Indices: 126083405--126083462 Score: 73
Period size: 31 Copynumber: 2.0 Consensus size: 29
126083395 AGTTATACAA
126083405 TAAATTTTTATAAATAAAAAATACATAAAC
1 TAAATTTTTATAAATAAAAAATA-ATAAAC
**
126083435 TAAATTTTATATTTATAAAAAAT-ATAAA
1 TAAATTTT-TATAAATAAAAAATAATAAA
126083463 AAATTATGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.20
30 8 0.32
31 12 0.48
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (29 bp):
TAAATTTTTATAAATAAAAAATAATAAAC
Found at i:126084300 original size:17 final size:18
Alignment explanation
Indices: 126084268--126084301 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
126084258 CTCGTTAAAA
*
126084268 TTTAATTTTTAAAAAATT
1 TTTAATTTTAAAAAAATT
126084286 TTTAA-TTTAAAAAAAT
1 TTTAATTTTAAAAAAAT
126084302 ATAAAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTAATTTTAAAAAAATT
Found at i:126093705 original size:80 final size:80
Alignment explanation
Indices: 126093572--126093732 Score: 295
Period size: 80 Copynumber: 2.0 Consensus size: 80
126093562 TCAAATTGTT
126093572 AATATAATTTTACAAATTAAGTGACTTAGCCCAAATACAATCCCTGTGGAGACGATAACTCGATA
1 AATATAATTTTACAAATTAAGTGACTTAGCCCAAATACAATCCCTGTGGAGACGATAACTCGATA
126093637 CTTACGTATTACTTG
66 CTTACGTATTACTTG
* *
126093652 AATATAATTTTACAAATTAAGTGACTTAGCCCAAATACAATCCTTGTGGAGACGATAACTTGATA
1 AATATAATTTTACAAATTAAGTGACTTAGCCCAAATACAATCCCTGTGGAGACGATAACTCGATA
*
126093717 CTTACTTATTACTTG
66 CTTACGTATTACTTG
126093732 A
1 A
126093733 TAACAACTGT
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 78 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (80 bp):
AATATAATTTTACAAATTAAGTGACTTAGCCCAAATACAATCCCTGTGGAGACGATAACTCGATA
CTTACGTATTACTTG
Found at i:126094131 original size:18 final size:20
Alignment explanation
Indices: 126094098--126094145 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
126094088 TCTCAATCAA
* *
126094098 ATAAAAAGTAATTTATTCG-
1 ATAAACAGTAACTTATTCGT
126094117 AT-AACAGTAACTTATTCGT
1 ATAAACAGTAACTTATTCGT
126094136 ATAAACAGTA
1 ATAAACAGTA
126094146 TTTCATCCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 14 0.56
19 4 0.16
20 7 0.28
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.33
Consensus pattern (20 bp):
ATAAACAGTAACTTATTCGT
Found at i:126094368 original size:23 final size:23
Alignment explanation
Indices: 126094342--126094410 Score: 66
Period size: 24 Copynumber: 2.8 Consensus size: 23
126094332 TAAGCTCCAT
*
126094342 TGAGCTGAAACGGTAAGCTTTGA
1 TGAGCTGAAACGGTAAGCTTTAA
**
126094365 TGAGCTGAAAATAGTAAGCTTTAA
1 TGAGCTG-AAACGGTAAGCTTTAA
*
126094389 TAAGCTGATATATCGGTAAGCT
1 TGAGCTGA-A-A-CGGTAAGCT
126094411 CATACGAGCT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
23 8 0.22
24 20 0.56
25 1 0.03
26 7 0.19
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.29
Consensus pattern (23 bp):
TGAGCTGAAACGGTAAGCTTTAA
Found at i:126099432 original size:18 final size:17
Alignment explanation
Indices: 126099390--126099432 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
126099380 GTTTCCTCTG
*
126099390 AAATCGTTATTTTAAAA
1 AAATTGTTATTTTAAAA
* *
126099407 AAAATGTTATTTTCATAA
1 AAATTGTTATTTT-AAAA
126099425 AAATTGTT
1 AAATTGTT
126099433 TTATCAATCG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (17 bp):
AAATTGTTATTTTAAAA
Found at i:126099903 original size:15 final size:15
Alignment explanation
Indices: 126099853--126099904 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
126099843 CGGCCAGGAA
*
126099853 AAAGAGAAGAAAAAT
1 AAAGAAAAGAAAAAT
* *
126099868 AAAGATTAGAGAAAAAG
1 AAAGA--AAAGAAAAAT
*
126099885 AAAGAAAAGAAACAT
1 AAAGAAAAGAAAAAT
126099900 AAAGA
1 AAAGA
126099905 GGACTTGCCA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
15 17 0.59
17 12 0.41
ACGTcount: A:0.71, C:0.02, G:0.19, T:0.08
Consensus pattern (15 bp):
AAAGAAAAGAAAAAT
Found at i:126101474 original size:39 final size:39
Alignment explanation
Indices: 126101420--126101496 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
126101410 CACATAGCGT
* *
126101420 TTCAATTCAATCCATTCTAGCCACATATGGCAGATTCAA
1 TTCAATTCAATCCATTCTAGCCACATATGCCAAATTCAA
*
126101459 TTCAATTCAATCCATTCTAGCCATATATGCCAAATTCA
1 TTCAATTCAATCCATTCTAGCCACATATGCCAAATTCA
126101497 CTAATATCTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (39 bp):
TTCAATTCAATCCATTCTAGCCACATATGCCAAATTCAA
Found at i:126105900 original size:45 final size:46
Alignment explanation
Indices: 126105702--126105970 Score: 177
Period size: 50 Copynumber: 5.6 Consensus size: 46
126105692 AGATGCCGAC
*
126105702 GCCATGTCCCAGGCATGGTCTTACACTGACTCACA-CATCAAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTG--TCACATC-TCAAAGTCGAT
* ** * * * * * *
126105750 GCCATGTCCTAGGTATGGTCTTACATTGGCTCTCATATATCGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACA----CTGTCACATCTCAAAGTCGAT
* * * * **
126105800 GCCATGTCCTAAACAAGGTCTTACACTGGCTCTCATCT-ACCGGTGGCGAT
1 GCCATGTCCCAGACATGGTCTTACACT-G-TCACATCTCA-AAGT--CGAT
*
126105850 GCCATGTCCCAGACATGGTCTTACACTGACACATCTC-AAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGTCACATCTCAAAGTCGAT
* *
126105895 GCCATGTCCCAGACATGGTCTTACACTAGCTTTCATATCTCAAAG-CTAT
1 GCCATGTCCCAGACATGGTCTTACACT-G---TCACATCTCAAAGTCGAT
* *
126105944 GCAATGTCCCAAACATGGTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
126105971 ATCTCTCGTC
Statistics
Matches: 174, Mismatches: 31, Indels: 31
0.74 0.13 0.13
Matches are distributed among these distances:
45 31 0.18
46 3 0.02
47 2 0.01
48 36 0.21
49 36 0.21
50 64 0.37
52 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCATGTCCCAGACATGGTCTTACACTGTCACATCTCAAAGTCGAT
Found at i:126105954 original size:49 final size:46
Alignment explanation
Indices: 126105846--126105971 Score: 157
Period size: 49 Copynumber: 2.7 Consensus size: 46
126105836 CTACCGGTGG
126105846 CGATGCCATGTCCCAGACATGGTCTTACACT-GACACATCTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGACACATCTCAAGT
* *
126105891 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATATCTCAAAG-
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG---ACACATCTC-AAGT
* * *
126105940 CTATGCAATGTCCCAAACATGGTCTTACACTA
1 CGATGCCATGTCCCAGACATGGTCTTACACTA
126105972 TCTCTCGTCT
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
45 31 0.44
46 1 0.01
49 36 0.51
50 3 0.04
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGACACATCTCAAGT
Found at i:126105977 original size:144 final size:147
Alignment explanation
Indices: 126105702--126105977 Score: 362
Period size: 145 Copynumber: 1.9 Consensus size: 147
126105692 AGATGCCGAC
* * **
126105702 GCCATGTCCCAGGCATGGTCTTACACTGACTCACACATCAAAGTCGATGCCATGTCCTAGGTATG
1 GCCATGTCCCAGACATGGTCTTACACTGAC-CACACATCAAAGTCGATGCCATGTCCCAGACATG
* * * * * * *
126105767 GTCTTACATTGGCTCTCATATATCGAGGCCGATGCCATGTCCTAAACAAGGTCTTACACTGGCTC
65 GTCTTACACTAGCTCTCATATATCAAAGCCGATGCAATGTCCCAAACAAGGTCTTACACTAGCTC
126105832 TCATCTACCGGTGGCGAT
130 TCATCTACCGGTGGCGAT
126105850 GCCATGTCCCAGACATGGTCTTACACTGA-CACATC-TC-AAGTCGATGCCATGTCCCAGACATG
1 GCCATGTCCCAGACATGGTCTTACACTGACCACA-CATCAAAGTCGATGCCATGTCCCAGACATG
* * * * *
126105912 GTCTTACACTAGCTTTCATATCTCAAAG-CTATGCAATGTCCCAAACATGGTCTTACACTATCTC
65 GTCTTACACTAGCTCTCATATATCAAAGCCGATGCAATGTCCCAAACAAGGTCTTACACTAGCTC
126105976 TC
130 TC
126105978 GTCTCAATGC
Statistics
Matches: 111, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
144 32 0.29
145 44 0.40
146 6 0.05
147 1 0.01
148 28 0.25
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (147 bp):
GCCATGTCCCAGACATGGTCTTACACTGACCACACATCAAAGTCGATGCCATGTCCCAGACATGG
TCTTACACTAGCTCTCATATATCAAAGCCGATGCAATGTCCCAAACAAGGTCTTACACTAGCTCT
CATCTACCGGTGGCGAT
Found at i:126108790 original size:34 final size:34
Alignment explanation
Indices: 126108717--126108802 Score: 109
Period size: 34 Copynumber: 2.5 Consensus size: 34
126108707 TGGGCCCAAG
* * *
126108717 CCCATATCAGTAACAGTAGTAGTCTGGGCCTTAA
1 CCCATTTCAGTAACAGTAGCAGTCTGAGCCTTAA
* *
126108751 CCCATTTCAGTAACAGTAGCAGTCTGAGCTTTAG
1 CCCATTTCAGTAACAGTAGCAGTCTGAGCCTTAA
* *
126108785 TCCATTTCAGTAATAGTA
1 CCCATTTCAGTAACAGTA
126108803 ATCAGTGCAG
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 45 1.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (34 bp):
CCCATTTCAGTAACAGTAGCAGTCTGAGCCTTAA
Found at i:126109256 original size:27 final size:27
Alignment explanation
Indices: 126109174--126109259 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 27
126109164 AAATCTATCC
* *
126109174 TTTTACCTTACAGGGATATTACAATCA
1 TTTTACCCTACAGGGATAATACAATCA
* * *
126109201 TATTACCCTACAGGGTTAATACAACCA
1 TTTTACCCTACAGGGATAATACAATCA
* *
126109228 TTTTACCCTATAGGGGTAATACAATCA
1 TTTTACCCTACAGGGATAATACAATCA
126109255 TTTTA
1 TTTTA
126109260 TCACATAAGA
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.35
Consensus pattern (27 bp):
TTTTACCCTACAGGGATAATACAATCA
Found at i:126109282 original size:27 final size:27
Alignment explanation
Indices: 126109252--126109351 Score: 119
Period size: 27 Copynumber: 3.7 Consensus size: 27
126109242 GGTAATACAA
* *
126109252 TCATTTTATCACATAAGAGCAAAATTG
1 TCATTTTATCACATAAGGGCAAAATAG
*
126109279 TCATTTTATCACATAAGGGCAAAACAG
1 TCATTTTATCACATAAGGGCAAAATAG
** * *
126109306 TCATTTTGCCATATAAGGGAAAAATAG
1 TCATTTTATCACATAAGGGCAAAATAG
* *
126109333 TCATTCTATCTCATAAGGG
1 TCATTTTATCACATAAGGG
126109352 TTCAAGTATG
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (27 bp):
TCATTTTATCACATAAGGGCAAAATAG
Found at i:126111866 original size:29 final size:29
Alignment explanation
Indices: 126111773--126111866 Score: 77
Period size: 29 Copynumber: 3.2 Consensus size: 29
126111763 TAACACAGTG
*
126111773 TCAGTA-CAATCTGGGCCAAAGCCCT-AT
1 TCAGTAGCAATCTGGGCCTAAGCCCTAAT
* *
126111800 TCAGTAAAGTACAGTCTGGGCCTTAGCCCTTAA-
1 TCAGT--AG--CAATCTGGGCCTAAGCCC-TAAT
* *
126111833 ACAGTAGCAATATGGGCCTAAGCCCTAAT
1 TCAGTAGCAATCTGGGCCTAAGCCCTAAT
126111862 TCAGT
1 TCAGT
126111867 CTTGACATAT
Statistics
Matches: 51, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
27 5 0.10
28 3 0.06
29 20 0.39
31 2 0.04
32 15 0.29
33 5 0.10
34 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (29 bp):
TCAGTAGCAATCTGGGCCTAAGCCCTAAT
Found at i:126111920 original size:31 final size:31
Alignment explanation
Indices: 126111872--126111955 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
126111862 TCAGTCTTGA
*
126111872 CATAT-ACTGGGCTGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
* *
126111902 CATATCACAGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
126111933 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
126111956 ACTGTAAACG
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:126112026 original size:42 final size:42
Alignment explanation
Indices: 126111979--126112070 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
126111969 TGTCCCTTAG
*
126111979 GCCCATTTCAATATCACATGTAATGTCAATGGAGGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAAGGTATGCAA
*
126112021 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAAGGTATGCAA
126112063 GCCCATTT
1 GCCCATTT
126112071 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAAGGTATGCAA
Found at i:126112245 original size:25 final size:25
Alignment explanation
Indices: 126112217--126112286 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
126112207 CTCTTTTAAT
*
126112217 AACTGGGGCAAATCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
126112242 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
126112267 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
126112287 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:126112610 original size:15 final size:15
Alignment explanation
Indices: 126112590--126112619 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
126112580 ATCAAATTCG
126112590 GGCTTTTGGGCCCAA
1 GGCTTTTGGGCCCAA
126112605 GGCTTTTGGGCCCAA
1 GGCTTTTGGGCCCAA
126112620 AACCCCTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.33, T:0.27
Consensus pattern (15 bp):
GGCTTTTGGGCCCAA
Found at i:126113287 original size:29 final size:27
Alignment explanation
Indices: 126113224--126113325 Score: 84
Period size: 27 Copynumber: 3.8 Consensus size: 27
126113214 ATCTACAAAC
* *
126113224 CAAGGGTA-TTTCA-AATTTTGTAAAC
1 CAAGGGTATTTTTATAATTTTGTAAAT
**
126113249 CAATAGTATTTTTATAACTTTTAG-AAAGT
1 CAAGGGTATTTTTATAA-TTTT-GTAAA-T
*
126113278 CAAGGGTATTTCTATAATTTTGTAAAT
1 CAAGGGTATTTTTATAATTTTGTAAAT
* **
126113305 CAGGGGTATTTTGGTAATTTT
1 CAAGGGTATTTTTATAATTTT
126113326 ACAAATTGAA
Statistics
Matches: 60, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
25 6 0.10
26 4 0.07
27 21 0.35
28 14 0.23
29 15 0.25
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (27 bp):
CAAGGGTATTTTTATAATTTTGTAAAT
Found at i:126113322 original size:27 final size:27
Alignment explanation
Indices: 126113306--126113430 Score: 164
Period size: 27 Copynumber: 4.7 Consensus size: 27
126113296 TTTGTAAATC
126113306 AGGGGTATTTTGGTAATTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* * ** *
126113332 TGAAGGTATTTCAGTAATTTCACAAACT
1 AG-GGGTATTTTGGTAATTTTACAAACT
* *
126113360 AGTGGTATTTCGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
126113387 A-GGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
126113413 AGGGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
126113431 CTATCCTACA
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 25 0.29
27 58 0.68
28 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:126113340 original size:54 final size:53
Alignment explanation
Indices: 126113282--126113430 Score: 169
Period size: 54 Copynumber: 2.8 Consensus size: 53
126113272 GAAAGTCAAG
** *
126113282 GGTATTTCTATAATTTTGTAAA-TCAGGGGTATTTTGGTAATTTTACAAATTGAA
1 GGTATTTCTATAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACT-AA
* * * *
126113336 GGTATTTC-AGTAATTTCACAAACTAGTGGTATTTCGGTAATTTTACAAACTAG
1 GGTATTTCTA-TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAA
*
126113389 GGTATTT-TGGTAATTTTACAAACTAGGGGTATTTTGGTAATT
1 GGTATTTCT-ATAATTTTACAAACTAGGGGTATTTTGGTAATT
126113431 CTATCCTACA
Statistics
Matches: 80, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
53 38 0.47
54 41 0.51
55 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.42
Consensus pattern (53 bp):
GGTATTTCTATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAA
Found at i:126113412 original size:53 final size:54
Alignment explanation
Indices: 126113306--126113463 Score: 185
Period size: 54 Copynumber: 2.9 Consensus size: 54
126113296 TTTGTAAATC
*
126113306 AGGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCAGTAATTTCACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACTGAAGGTATTTCAGTAATTTCACAAACT
* * * ** *
126113360 AGTGGTATTTCGGTAATTTTACAAACT-AGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACTGAAGGTATTTCAGTAATTTCACAAACT
* ** * *
126113413 AGGGGTATTTTGGTAATTCTATCCTACAG-GGGTATTTCAGTAATTTCACAA
1 AGGGGTATTTTGGTAATTTTA-CAAACTGAAGGTATTTCAGTAATTTCACAA
126113464 TCGAGGGTAA
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 40 0.47
54 46 0.53
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAACTGAAGGTATTTCAGTAATTTCACAAACT
Found at i:126113470 original size:27 final size:27
Alignment explanation
Indices: 126113302--126113470 Score: 109
Period size: 27 Copynumber: 6.3 Consensus size: 27
126113292 TAATTTTGTA
* *
126113302 AATC-AGGGGTATTTTGGTAATTTTAC
1 AATCTAGGGGTATTTCGGTAATTTCAC
* *
126113328 AAAT-T-GAAGGTATTTCAGTAATTTCAC
1 -AATCTAG-GGGTATTTCGGTAATTTCAC
* * *
126113355 AAACTAGTGGTATTTCGGTAATTTTAC
1 AATCTAGGGGTATTTCGGTAATTTCAC
* * *
126113382 AAACTA-GGGTATTTTGGTAATTTTAC
1 AATCTAGGGGTATTTCGGTAATTTCAC
* *
126113408 AAACTAGGGGTATTTTGGTAA-TT--C
1 AATCTAGGGGTATTTCGGTAATTTCAC
* *
126113432 TATCCTACAGGGGTATTTCAGTAATTTCAC
1 AAT-CT--AGGGGTATTTCGGTAATTTCAC
*
126113462 AATCGAGGG
1 AATCTAGGG
126113471 TAAAACGGTA
Statistics
Matches: 115, Mismatches: 16, Indels: 22
0.75 0.10 0.14
Matches are distributed among these distances:
24 2 0.02
25 2 0.02
26 29 0.25
27 75 0.65
28 3 0.03
29 1 0.01
30 3 0.03
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
AATCTAGGGGTATTTCGGTAATTTCAC
Found at i:126113496 original size:27 final size:26
Alignment explanation
Indices: 126113466--126113611 Score: 175
Period size: 27 Copynumber: 5.4 Consensus size: 26
126113456 TTTCACAATC
126113466 GAGGGTAAAACGGTAATTTTGTAAACT
1 GAGGGTAAAACGGTAATTTTGTAAA-T
*
126113493 GAGGGTAAAATGGTAATTTTGTAAATT
1 GAGGGTAAAACGGTAATTTTGTAAA-T
* *
126113520 GAGGGTAAAACGGTAAATCTGTAAATT
1 GAGGGTAAAACGGTAATTTTGTAAA-T
* * *
126113547 GAGGGTAAAATGGTAATTCTATAAAT
1 GAGGGTAAAACGGTAATTTTGTAAAT
*
126113573 CGAGGGTAAAACGTTAATTTTGTAAAT
1 -GAGGGTAAAACGGTAATTTTGTAAAT
126113600 CGAGGGTGAAAA
1 -GAGGGT-AAAA
126113612 TCGATGGTGA
Statistics
Matches: 105, Mismatches: 12, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
26 1 0.01
27 100 0.95
28 4 0.04
ACGTcount: A:0.39, C:0.05, G:0.26, T:0.29
Consensus pattern (26 bp):
GAGGGTAAAACGGTAATTTTGTAAAT
Found at i:126113543 original size:54 final size:53
Alignment explanation
Indices: 126113462--126113612 Score: 212
Period size: 54 Copynumber: 2.8 Consensus size: 53
126113452 GTAATTTCAC
* *
126113462 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAA-TGAGGGTAAAATGGTAATTCTATA
* * *
126113516 AATTGAGGGTAAAACGGTAAATCTGTAAATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAA-TGAGGGTAAAATGGTAATTCTATA
*
126113570 AATCGAGGGTAAAACGTTAATTTTGTAAATCGAGGGTGAAAAT
1 AATCGAGGGTAAAACGGTAATTTTGTAAAT-GAGGGT-AAAAT
126113613 CGATGGTGAA
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 79 0.93
55 5 0.06
ACGTcount: A:0.39, C:0.06, G:0.25, T:0.30
Consensus pattern (53 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAATGAGGGTAAAATGGTAATTCTATA
Found at i:126113613 original size:40 final size:38
Alignment explanation
Indices: 126113569--126113650 Score: 101
Period size: 40 Copynumber: 2.1 Consensus size: 38
126113559 GTAATTCTAT
* * *
126113569 AAATCGAGGGTAAAACGTTAATTTTGTAAATCGAGGGTGA
1 AAATCGAGGGTAAAACGGTAATTCTAT-AATCGAGGGT-A
* *
126113609 AAATCGATGGTGAAACGGTAATTCTATAATCGAGGGTA
1 AAATCGAGGGTAAAACGGTAATTCTATAATCGAGGGTA
126113647 AAAT
1 AAAT
126113651 GGTAATTCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 5 0.14
39 10 0.27
40 22 0.59
ACGTcount: A:0.39, C:0.09, G:0.26, T:0.27
Consensus pattern (38 bp):
AAATCGAGGGTAAAACGGTAATTCTATAATCGAGGGTA
Found at i:126113673 original size:27 final size:26
Alignment explanation
Indices: 126113608--126113673 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
126113598 ATCGAGGGTG
*
126113608 AAAATCGATGGTGAAACGGTAATTCT
1 AAAATCGATGGTAAAACGGTAATTCT
* * *
126113634 ATAATCGAGGGTAAAATGGTAATTCT
1 AAAATCGATGGTAAAACGGTAATTCT
126113660 ACAAATCGATGGTA
1 A-AAATCGATGGTA
126113674 TTTTAGTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 23 0.70
27 10 0.30
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAATCGATGGTAAAACGGTAATTCT
Found at i:126116022 original size:31 final size:31
Alignment explanation
Indices: 126115982--126116065 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
126115972 TCAGTCTCGA
*
126115982 CATAT-ACTGGACCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
126116012 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
126116043 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
126116066 ACTGTAAACG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:126116136 original size:42 final size:42
Alignment explanation
Indices: 126116089--126116180 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
126116079 TGGCCCTTAG
*
126116089 GCCCATTTCAATATCACATGTAATGTCAATGGATATATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATATATGCAA
*
126116131 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATATATGCAA
126116173 GCCCATTT
1 GCCCATTT
126116181 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATATATGCAA
Found at i:126116394 original size:25 final size:26
Alignment explanation
Indices: 126116323--126116396 Score: 100
Period size: 25 Copynumber: 3.0 Consensus size: 26
126116313 TAGCCTCTTT
*
126116323 TAAT-AACTGGGGCAAAGCCC-TCTC
1 TAATAAACTGGGGCAAAGCCCTTTTC
126116347 TAATAAACTGGGGCAAAGCCCTTTTC
1 TAATAAACTGGGGCAAAGCCCTTTTC
* *
126116373 -GATAAACTGGGGCAGAGCCCTTTT
1 TAATAAACTGGGGCAAAGCCCTTTT
126116397 AGCACTTCCT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
24 4 0.09
25 38 0.84
26 3 0.07
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (26 bp):
TAATAAACTGGGGCAAAGCCCTTTTC
Found at i:126117348 original size:27 final size:27
Alignment explanation
Indices: 126117168--126117357 Score: 115
Period size: 27 Copynumber: 7.0 Consensus size: 27
126117158 TTGGTAAATC
126117168 TACAAAC-CAAGGGTATTTC-AGTAATTT
1 TACAAACTC-AGGGTATTTCGA-TAATTT
** * *
126117195 TGTAAAC-CAATGGTATTTCTATAATTTT
1 TACAAACTC-AGGGTATTTCGATAA-TTT
* * *
126117223 TAGAAAGTCAAGGGTATTTCTATAATTT
1 TACAAACTC-AGGGTATTTCGATAATTT
** * *
126117251 TGTAAA-TCAGGGGTATTTTGGTAATTT
1 TACAAACTCA-GGGTATTTCGATAATTT
* *
126117278 TACAAATTGAGGGTATTTC-AGTAATTT
1 TACAAACTCAGGGTATTTCGA-TAATTT
*
126117305 CACAAAC-CAGTGGTATTTCGATAATTT
1 TACAAACTCAG-GGTATTTCGATAATTT
*
126117332 TACAAACT-AGGGATATTTTGATAATT
1 TACAAACTCAGGG-TATTTCGATAATT
126117358 CTATCTTACA
Statistics
Matches: 131, Mismatches: 22, Indels: 20
0.76 0.13 0.12
Matches are distributed among these distances:
26 5 0.04
27 92 0.70
28 18 0.14
29 16 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
TACAAACTCAGGGTATTTCGATAATTT
Found at i:126117349 original size:54 final size:54
Alignment explanation
Indices: 126117168--126117338 Score: 182
Period size: 54 Copynumber: 3.1 Consensus size: 54
126117158 TTGGTAAATC
* *
126117168 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTT
1 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTCGATAA-TTT
* * * * * *
126117223 TAGAAAGTCAAGGGTATTTCTA-TAATTTTGTAAATCAGGGGTATTTTGGTAATTT
1 TACAAA-CCAAGGGTATTTC-AGTAATTTTGTAAACCAGTGGTATTTCGATAATTT
*** ***
126117278 TACAAATTGAGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTCGATAATTT
1 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTCGATAATTT
126117332 TACAAAC
1 TACAAAC
126117339 TAGGGATATT
Statistics
Matches: 94, Mismatches: 19, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
53 1 0.01
54 43 0.46
55 13 0.14
56 36 0.38
57 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (54 bp):
TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTCGATAATTT
Found at i:126117351 original size:81 final size:81
Alignment explanation
Indices: 126117235--126117390 Score: 190
Period size: 81 Copynumber: 1.9 Consensus size: 81
126117225 GAAAGTCAAG
* ** * * * **
126117235 GGTATTTCTATAATTTTGTAAATCAGGGGTATTTTGGTAATTTTA-CAAATTGAGGGTATTTCAG
1 GGTATTTCGATAATTTTACAAATCAGGGATATTTTGATAATTCTATCAAA-CAAGGGTATTTCAG
126117299 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
**
126117316 GGTATTTCGATAATTTTACAAA-CTAGGGATATTTTGATAATTCTATCTTACAAGGGTATTTCAG
1 GGTATTTCGATAATTTTACAAATC-AGGGATATTTTGATAATTCTATCAAACAAGGGTATTTCAG
126117380 TAATTTCACAA
65 TAATTTCACAA
126117391 TCGAGGGTAA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
80 1 0.02
81 60 0.95
82 2 0.03
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (81 bp):
GGTATTTCGATAATTTTACAAATCAGGGATATTTTGATAATTCTATCAAACAAGGGTATTTCAGT
AATTTCACAAACCAGT
Found at i:126117438 original size:27 final size:27
Alignment explanation
Indices: 126117389--126117542 Score: 213
Period size: 27 Copynumber: 5.7 Consensus size: 27
126117379 GTAATTTCAC
126117389 AATCGAGGGT-AAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
126117415 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
*
126117442 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
126117469 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * *
126117496 AATCGAGGGTGAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
126117523 GATCGAGGGTAAAATGGTAA
1 AATCGAGGGTAAAACGGTAA
126117543 ATTCTACAAA
Statistics
Matches: 113, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
25 1 0.01
26 8 0.07
27 103 0.91
28 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:126119709 original size:19 final size:20
Alignment explanation
Indices: 126119663--126119709 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
126119653 ATCGAGTGGT
*
126119663 TAATTAGGCTTTAATTAAGTG
1 TAATTA-GCTTTAATTAAGAG
126119684 -AATTTAGC-TTAATTAAGAG
1 TAA-TTAGCTTTAATTAAGAG
126119703 TAATTAG
1 TAATTAG
126119710 GAAAAAGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
19 14 0.61
20 6 0.26
21 3 0.13
ACGTcount: A:0.38, C:0.04, G:0.17, T:0.40
Consensus pattern (20 bp):
TAATTAGCTTTAATTAAGAG
Found at i:126120059 original size:30 final size:28
Alignment explanation
Indices: 126120017--126120084 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 28
126120007 GTGATATATT
* *
126120017 TATTTAATTATTTTTTATTTAAGTAAATAGA
1 TATTT-ATTATTTATTA-TTAAG-AAAAAGA
*
126120048 TATTTATTATTTATTATTAAGAAAAATA
1 TATTTATTATTTATTATTAAGAAAAAGA
126120076 TATTTATTA
1 TATTTATTA
126120085 ATTAAATAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 14 0.41
29 5 0.15
30 10 0.29
31 5 0.15
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.54
Consensus pattern (28 bp):
TATTTATTATTTATTATTAAGAAAAAGA
Found at i:126120298 original size:8 final size:8
Alignment explanation
Indices: 126120287--126120313 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
126120277 AAAGCAAAAA
126120287 AAAGAAAC
1 AAAGAAAC
126120295 AAAGAAAC
1 AAAGAAAC
126120303 AAAGAAAC
1 AAAGAAAC
126120311 AAA
1 AAA
126120314 TATAGAACAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.78, C:0.11, G:0.11, T:0.00
Consensus pattern (8 bp):
AAAGAAAC
Found at i:126123198 original size:36 final size:36
Alignment explanation
Indices: 126123089--126123200 Score: 118
Period size: 36 Copynumber: 3.1 Consensus size: 36
126123079 TAAATAAAAG
* * * *
126123089 TACTGAATGACTGACTGTTACTGAATAATTG-ATCGT
1 TACTGAATAACTAATTGCTACTGAATAATTGAAT-GT
** * *
126123125 TACTGAATAACTAATTGCTACTGAGCAAATGATTGT
1 TACTGAATAACTAATTGCTACTGAATAATTGAATGT
* *
126123161 TACTGAATAACTAATTTCTACTGAATGATTGAATGT
1 TACTGAATAACTAATTGCTACTGAATAATTGAATGT
126123197 TACT
1 TACT
126123201 AAATGAAACT
Statistics
Matches: 61, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
36 60 0.98
37 1 0.02
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (36 bp):
TACTGAATAACTAATTGCTACTGAATAATTGAATGT
Found at i:126123200 original size:18 final size:18
Alignment explanation
Indices: 126123089--126123200 Score: 77
Period size: 18 Copynumber: 6.2 Consensus size: 18
126123079 TAAATAAAAG
* *
126123089 TACTGAATGACTGACTGT
1 TACTGAATAACTGAATGT
*
126123107 TACTGAATAATTG-ATCGT
1 TACTGAATAACTGAAT-GT
*
126123125 TACTGAATAACT-AATTGC
1 TACTGAATAACTGAA-TGT
** * *
126123143 TACTGAGCAAATGATTGT
1 TACTGAATAACTGAATGT
*
126123161 TACTGAATAACT-AATTT
1 TACTGAATAACTGAATGT
* *
126123178 CTACTGAATGATTGAATGT
1 -TACTGAATAACTGAATGT
126123197 TACT
1 TACT
126123201 AAATGAAACT
Statistics
Matches: 70, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
17 4 0.06
18 60 0.86
19 6 0.09
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (18 bp):
TACTGAATAACTGAATGT
Found at i:126126068 original size:5 final size:5
Alignment explanation
Indices: 126126060--126126095 Score: 54
Period size: 5 Copynumber: 6.8 Consensus size: 5
126126050 ATGAAATGTG
126126060 AAAAT AAAAT AAAAT AAAAAT AAAAT AAAAT GAAAA
1 AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT -AAAA
126126096 ACACACAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 20 0.69
6 9 0.31
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:126126079 original size:16 final size:17
Alignment explanation
Indices: 126126060--126126096 Score: 67
Period size: 16 Copynumber: 2.2 Consensus size: 17
126126050 ATGAAATGTG
126126060 AAAATAAAATAAAAT-A
1 AAAATAAAATAAAATGA
126126076 AAAATAAAATAAAATGA
1 AAAATAAAATAAAATGA
126126093 AAAA
1 AAAA
126126097 CACACAGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (17 bp):
AAAATAAAATAAAATGA
Found at i:126126095 original size:11 final size:10
Alignment explanation
Indices: 126126060--126126095 Score: 54
Period size: 11 Copynumber: 3.4 Consensus size: 10
126126050 ATGAAATGTG
126126060 AAAATAAAAT
1 AAAATAAAAT
126126070 AAAATAAAAAT
1 AAAAT-AAAAT
126126081 AAAATAAAAT
1 AAAATAAAAT
126126091 GAAAA
1 -AAAA
126126096 ACACACAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.42
11 14 0.58
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.17
Consensus pattern (10 bp):
AAAATAAAAT
Found at i:126134383 original size:30 final size:30
Alignment explanation
Indices: 126134309--126134394 Score: 88
Period size: 30 Copynumber: 2.9 Consensus size: 30
126134299 TTCAGTTCAC
*
126134309 GAGCTAAACCTTAGCTCAACTTCAGCTTAG
1 GAGCTAAACCTTAGCTCAACTTTAGCTTAG
**
126134339 GAG-TATAATTTTAGCTCAACTTTAGCTTAAG
1 GAGCTA-AACCTTAGCTCAACTTTAGCTT-AG
* *
126134370 G-GCTAAAGCTTAGCTC-ATTTTAGCT
1 GAGCTAAACCTTAGCTCAACTTTAGCT
126134395 CAAACCCAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
29 10 0.21
30 32 0.68
31 5 0.11
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (30 bp):
GAGCTAAACCTTAGCTCAACTTTAGCTTAG
Found at i:126135993 original size:12 final size:13
Alignment explanation
Indices: 126135978--126136020 Score: 72
Period size: 12 Copynumber: 3.5 Consensus size: 13
126135968 AAGTATATAC
126135978 AAAAAAATTC-AA
1 AAAAAAATTCGAA
126135990 AAAAAAATTCGAA
1 AAAAAAATTCGAA
126136003 AAAAAAA-TCGAA
1 AAAAAAATTCGAA
126136015 AAAAAA
1 AAAAAA
126136021 GGTGTTTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 21 0.70
13 9 0.30
ACGTcount: A:0.77, C:0.07, G:0.05, T:0.12
Consensus pattern (13 bp):
AAAAAAATTCGAA
Found at i:126136356 original size:20 final size:20
Alignment explanation
Indices: 126136320--126136357 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
126136310 GAATGAAATC
*
126136320 GAGAGAAGAAATAAAGAAAA
1 GAGAGAAGAAAAAAAGAAAA
126136340 GAGAGAA-AAAAAGAAGAA
1 GAGAGAAGAAAAA-AAGAA
126136358 GAGAAAGTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (20 bp):
GAGAGAAGAAAAAAAGAAAA
Found at i:126136363 original size:16 final size:17
Alignment explanation
Indices: 126136321--126136361 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 17
126136311 AATGAAATCG
*
126136321 AGAGAAGAAATAAAGAAA
1 AGAG-AGAAAAAAAGAAA
126136339 AGAGAGAAAAAAAGAAGA
1 AGAGAGAAAAAAAGAA-A
126136357 AGAGA
1 AGAGA
126136362 AAGTGTACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (17 bp):
AGAGAGAAAAAAAGAAA
Found at i:126136415 original size:18 final size:19
Alignment explanation
Indices: 126136384--126136430 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
126136374 AAACAAAATC
**
126136384 GAAAAAGACATTGAA-AAA
1 GAAAAAGAGTTTGAACAAA
126136402 GAAAAAGAGTTTGAACAAA
1 GAAAAAGAGTTTGAACAAA
126136421 -AGAAAAGAGT
1 GA-AAAAGAGT
126136431 GGAAAGAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 14 0.56
19 11 0.44
ACGTcount: A:0.62, C:0.04, G:0.21, T:0.13
Consensus pattern (19 bp):
GAAAAAGAGTTTGAACAAA
Found at i:126145638 original size:40 final size:40
Alignment explanation
Indices: 126145567--126145645 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
126145557 TTACAGTACC
*
126145567 ACTTGGTGTATAGGGCTGGATCAGTCAATTTTATCCCCAT
1 ACTTGGTGTATAGGGCTGGATCAGGCAATTTTATCCCCAT
* * *
126145607 ACTTGGTGTGTAGGGCTGGGT-AGGGCGATTTTATCCCCA
1 ACTTGGTGTATAGGGCTGGATCA-GGCAATTTTATCCCCA
126145646 CATGGTGTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.03
40 33 0.97
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.33
Consensus pattern (40 bp):
ACTTGGTGTATAGGGCTGGATCAGGCAATTTTATCCCCAT
Found at i:126147401 original size:258 final size:258
Alignment explanation
Indices: 126146937--126147464 Score: 903
Period size: 258 Copynumber: 2.0 Consensus size: 258
126146927 TGCTCCGAGT
* * *
126146937 GTGGCCAAGTATTGGATAAAGGCCATAGAGCGCATAATGGATGACTTGGATTTTACTGATGAGCA
1 GTGGCCGAGTATTGGATAAAGGCCATAGAGCGCATAATGGATAACTTGGATTTTACTGATGAACA
* *
126147002 GAAGCTCAAGGGGGCTGTGTCTCTGCTTCGCGATGAGGCATACCAGTGGTGGTTGACCATTAAGG
66 GAAGCTCAAAGGGGCTGTGTCTCTGCTTCGCAATGAGGCATACCAGTGGTGGTTGACCATTAAGG
* * *
126147067 AGGGTACTCAGCCTGATAGGTTGACTTGGGATTTATTTAAGACCACCTATCTGAGTAAGTATGTG
131 AGGATACTCAGCCTGATAGGTTGACTTGGGATTTATTTAAGACCACCTATATGAGTAAGTATATG
*
126147132 GAAGCTAGCTACACTGACGCTAGGCAACGTGAGCTTCTGAATCTTACTAAGGGAGACCGTTCA
196 GAAGCTAGCTACACTGACACTAGGCAACGTGAGCTTCTGAATCTTACTAAGGGAGACCGTTCA
* * *
126147195 GTGGCCGAGTATTGGATGAAGGCCATAGAGTGCATAATGGATAACTTGGATTTTACTGATGAATA
1 GTGGCCGAGTATTGGATAAAGGCCATAGAGCGCATAATGGATAACTTGGATTTTACTGATGAACA
126147260 GAAGCTCAAAGGGGCTGTGTCTCTGCTTCGCAATGAGGCATACCAGTGGTGGTTGACCATTAAGG
66 GAAGCTCAAAGGGGCTGTGTCTCTGCTTCGCAATGAGGCATACCAGTGGTGGTTGACCATTAAGG
126147325 AGGATACTCAGCCTGATAGGTTGACTTGGGATTTATTTAAGACCACCTATATGAGTAAGTATATG
131 AGGATACTCAGCCTGATAGGTTGACTTGGGATTTATTTAAGACCACCTATATGAGTAAGTATATG
* * * *
126147390 GGAGCTAGCTACACTGACACTAGGCAATGTGAGCTTTTGAATCTTACTAAGGGAGACCGTTTA
196 GAAGCTAGCTACACTGACACTAGGCAACGTGAGCTTCTGAATCTTACTAAGGGAGACCGTTCA
*
126147453 GTGGTCGAGTAT
1 GTGGCCGAGTAT
126147465 GAGGCTGAAT
Statistics
Matches: 253, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
258 253 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (258 bp):
GTGGCCGAGTATTGGATAAAGGCCATAGAGCGCATAATGGATAACTTGGATTTTACTGATGAACA
GAAGCTCAAAGGGGCTGTGTCTCTGCTTCGCAATGAGGCATACCAGTGGTGGTTGACCATTAAGG
AGGATACTCAGCCTGATAGGTTGACTTGGGATTTATTTAAGACCACCTATATGAGTAAGTATATG
GAAGCTAGCTACACTGACACTAGGCAACGTGAGCTTCTGAATCTTACTAAGGGAGACCGTTCA
Found at i:126153055 original size:40 final size:40
Alignment explanation
Indices: 126153011--126153086 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
126153001 CAGTACCACT
126153011 TGGTGTGTAGGGCTGGATCGGTCGATTTTATCCCCATACG
1 TGGTGTGTAGGGCTGGATCGGTCGATTTTATCCCCATACG
* *
126153051 TGGTGTGTAGGGCTGGGTGGGTCGATTTTATCCCCA
1 TGGTGTGTAGGGCTGGATCGGTCGATTTTATCCCCA
126153087 CATGATGTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.13, C:0.18, G:0.36, T:0.33
Consensus pattern (40 bp):
TGGTGTGTAGGGCTGGATCGGTCGATTTTATCCCCATACG
Found at i:126154206 original size:32 final size:30
Alignment explanation
Indices: 126154132--126154213 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 30
126154122 GTATACAATT
* *
126154132 GTAACATAAATATTTAATTACTTTTTATTTAA
1 GTAA-ATAGATATTT-ATTACTTATTATTTAA
126154164 GTAAATAGATATTTATTACTTATTATTATTAA
1 GTAAATAGATATTTATTACTTATTA-T-TTAA
126154196 GTTAAA-AGATATTTATTA
1 G-TAAATAGATATTTATTA
126154214 ATTAAATAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
30 10 0.22
31 10 0.22
32 21 0.47
33 4 0.09
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (30 bp):
GTAAATAGATATTTATTACTTATTATTTAA
Found at i:126160025 original size:14 final size:14
Alignment explanation
Indices: 126160006--126160032 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
126159996 TAGAAAAACC
126160006 CAGAATAAAGAAAT
1 CAGAATAAAGAAAT
126160020 CAGAATAAAGAAA
1 CAGAATAAAGAAA
126160033 CCCAAGATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.07, G:0.15, T:0.11
Consensus pattern (14 bp):
CAGAATAAAGAAAT
Found at i:126167041 original size:13 final size:13
Alignment explanation
Indices: 126167020--126167058 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
126167010 ATTTGATTGG
126167020 AAAATGAATTAAA
1 AAAATGAATTAAA
*
126167033 AAGATGAATTAAA
1 AAAATGAATTAAA
126167046 AAAATGAATTAAA
1 AAAATGAATTAAA
126167059 TTATGAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.23
Consensus pattern (13 bp):
AAAATGAATTAAA
Found at i:126167077 original size:10 final size:10
Alignment explanation
Indices: 126167062--126167091 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
126167052 AATTAAATTA
126167062 TGAATATGTG
1 TGAATATGTG
126167072 TGAATATGTG
1 TGAATATGTG
126167082 TGAATATGTG
1 TGAATATGTG
126167092 AAGTGGGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.30, T:0.40
Consensus pattern (10 bp):
TGAATATGTG
Found at i:126167275 original size:21 final size:21
Alignment explanation
Indices: 126167229--126167308 Score: 79
Period size: 21 Copynumber: 3.8 Consensus size: 21
126167219 TACCGATCAC
*
126167229 GCACTTCATGTGTCATATTCAG
1 GCACTTCATGTGTCGT-TTCAG
* *
126167251 GCACTTTATGTGTCGTTTTAG
1 GCACTTCATGTGTCGTTTCAG
* * *
126167272 GCACCTCGTATGTCGTTTCAG
1 GCACTTCATGTGTCGTTTCAG
**
126167293 GCACTTTTTGTGTCGT
1 GCACTTCATGTGTCGT
126167309 ATACTACTTC
Statistics
Matches: 46, Mismatches: 12, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
21 32 0.70
22 14 0.30
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.41
Consensus pattern (21 bp):
GCACTTCATGTGTCGTTTCAG
Found at i:126168394 original size:13 final size:13
Alignment explanation
Indices: 126168376--126168405 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
126168366 AGTTCACACA
*
126168376 AAAAAATAAATAT
1 AAAAAATAAAAAT
126168389 AAAAAATAAAAAT
1 AAAAAATAAAAAT
126168402 AAAA
1 AAAA
126168406 TTCTGGAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:126174903 original size:24 final size:24
Alignment explanation
Indices: 126174876--126174929 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
126174866 AATTATAGTC
* * *
126174876 AAATATACTGTGCTAATAAATATT
1 AAATATACTATACTAATAAATAAT
* *
126174900 AAATATATTATACTCATAAATAAT
1 AAATATACTATACTAATAAATAAT
126174924 AAATAT
1 AAATAT
126174930 TAAATAAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.52, C:0.07, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATACTATACTAATAAATAAT
Found at i:126179164 original size:8 final size:9
Alignment explanation
Indices: 126179146--126179172 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
126179136 ACTAATTTAG
126179146 AATTTTAAA
1 AATTTTAAA
126179155 AATTTTAAA
1 AATTTTAAA
126179164 AATTTTAAA
1 AATTTTAAA
126179173 GGGTCTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
AATTTTAAA
Found at i:126182893 original size:15 final size:15
Alignment explanation
Indices: 126182873--126182924 Score: 86
Period size: 15 Copynumber: 3.5 Consensus size: 15
126182863 GCCACCAATA
126182873 CCACCAATAACATTG
1 CCACCAATAACATTG
*
126182888 CCACCAATGACATTG
1 CCACCAATAACATTG
126182903 CCACCAATAACATTG
1 CCACCAATAACATTG
*
126182918 ACACCAA
1 CCACCAA
126182925 CAGGTACACC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.40, C:0.35, G:0.08, T:0.17
Consensus pattern (15 bp):
CCACCAATAACATTG
Found at i:126183001 original size:24 final size:23
Alignment explanation
Indices: 126182942--126183006 Score: 82
Period size: 21 Copynumber: 2.9 Consensus size: 23
126182932 ACCAATCAAG
*
126182942 GAACCAACAGATCCACCAATCGA
1 GAACCAACAGATCCACCAACCGA
126182965 TG--CC-ACAGATCCACCAACCGA
1 -GAACCAACAGATCCACCAACCGA
126182986 GAAACCAACAGATCCACCAAC
1 G-AACCAACAGATCCACCAAC
126183007 TGAGGTACCA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
20 1 0.03
21 16 0.44
22 2 0.06
23 2 0.06
24 15 0.42
ACGTcount: A:0.42, C:0.38, G:0.12, T:0.08
Consensus pattern (23 bp):
GAACCAACAGATCCACCAACCGA
Found at i:126183016 original size:24 final size:23
Alignment explanation
Indices: 126182944--126183019 Score: 77
Period size: 24 Copynumber: 3.3 Consensus size: 23
126182934 CAATCAAGGA
126182944 ACCAACAGATCCACCAA-TCGA-T
1 ACCAACAGATCCACCAACT-GAGT
* * *
126182966 GCC-ACAGATCCACCAACCGAGAA
1 ACCAACAGATCCACCAACTGAG-T
126182989 ACCAACAGATCCACCAACTGAGGT
1 ACCAACAGATCCACCAACTGA-GT
126183013 ACCAACA
1 ACCAACA
126183020 TTGCCTTGAA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
21 15 0.35
22 2 0.05
23 2 0.05
24 23 0.53
25 1 0.02
ACGTcount: A:0.41, C:0.37, G:0.13, T:0.09
Consensus pattern (23 bp):
ACCAACAGATCCACCAACTGAGT
Found at i:126184464 original size:3 final size:3
Alignment explanation
Indices: 126184456--126184481 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
126184446 AAACCAGCCT
126184456 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
126184482 AGAAATGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:126208765 original size:1 final size:1
Alignment explanation
Indices: 126208759--126208783 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
126208749 TAGCCCTCCC
126208759 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
126208784 GGATGAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:126209527 original size:2 final size:2
Alignment explanation
Indices: 126209520--126209550 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
126209510 AAATGCCCAC
126209520 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
126209551 ACACACACAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:126209632 original size:6 final size:6
Alignment explanation
Indices: 126209619--126209649 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
126209609 TTTCTTTTTC
126209619 TCTT-T TCTTGT TCTTGT TCTTGT TCTTGT TC
1 TCTTGT TCTTGT TCTTGT TCTTGT TCTTGT TC
126209650 CCCCCTTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.00, C:0.19, G:0.13, T:0.68
Consensus pattern (6 bp):
TCTTGT
Found at i:126213486 original size:22 final size:23
Alignment explanation
Indices: 126213445--126213490 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
126213435 GGCAAAGTTG
*
126213445 AAATTAAATTATATATTTTTATAA
1 AAATTAAA-TATATAATTTTATAA
126213469 AAATTAAA-ATATAATTTTATAA
1 AAATTAAATATATAATTTTATAA
126213491 TTTTAATAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 13 0.62
24 8 0.38
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
AAATTAAATATATAATTTTATAA
Found at i:126227999 original size:40 final size:40
Alignment explanation
Indices: 126227891--126228138 Score: 367
Period size: 40 Copynumber: 6.2 Consensus size: 40
126227881 CGGGATTTAA
* * * * *
126227891 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
126227931 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126227971 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126228011 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126228051 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126228091 CCGGATATATCAACTCGCACGAATG--TTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126228129 CCGGATATAT
1 CCGGATATAT
126228139 TTCCAATGTT
Statistics
Matches: 191, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 23 0.12
39 1 0.01
40 167 0.87
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:126236135 original size:40 final size:40
Alignment explanation
Indices: 126236027--126236276 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
126236017 CGGGATTTAA
* * * * *
126236027 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
126236067 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126236107 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126236147 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126236187 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126236227 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126236267 CCGGATATAT
1 CCGGATATAT
126236277 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:126238111 original size:24 final size:24
Alignment explanation
Indices: 126238056--126238132 Score: 82
Period size: 24 Copynumber: 3.2 Consensus size: 24
126238046 GATATATCAG
* * * *
126238056 CTCATAAGATCTTACTGTTTTCAG
1 CTCATTAGAGCTTACTGTTCTCAA
*
126238080 CTCATTAGAGCTTACTATTCTCAA
1 CTCATTAGAGCTTACTGTTCTCAA
* *
126238104 CTCGTTAGAGCTTATTGTTCATCAA
1 CTCATTAGAGCTTACTGTTC-TCAA
126238129 CTCA
1 CTCA
126238133 GGAGGAGCTT
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
24 36 0.84
25 7 0.16
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (24 bp):
CTCATTAGAGCTTACTGTTCTCAA
Found at i:126238332 original size:20 final size:20
Alignment explanation
Indices: 126238284--126238340 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
126238274 TATGAATAAG
126238284 ATATGTGTTAATACGGATGAA
1 ATAT-TGTTAATACGGATGAA
* * * *
126238305 TTACTGTTATTACTGATGAA
1 ATATTGTTAATACGGATGAA
*
126238325 ATATTGTTTATACGGA
1 ATATTGTTAATACGGA
126238341 CGAACTACTG
Statistics
Matches: 27, Mismatches: 9, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
20 25 0.93
21 2 0.07
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.40
Consensus pattern (20 bp):
ATATTGTTAATACGGATGAA
Found at i:126245013 original size:17 final size:17
Alignment explanation
Indices: 126244983--126245016 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
126244973 GATATGATAC
* *
126244983 TAAAATTATTAAAAAAT
1 TAAAAATATAAAAAAAT
126245000 TAAAAATATAAAAAAAT
1 TAAAAATATAAAAAAAT
126245017 AAGGGAAACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAAATATAAAAAAAT
Found at i:126245295 original size:21 final size:23
Alignment explanation
Indices: 126245269--126245314 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
126245259 TAAAAGGTAT
*
126245269 TTAC-AAATTAAATC-TCTAAGA
1 TTACAAAATCAAATCTTCTAAGA
*
126245290 TTACAAAATCATATCTTCTAAGA
1 TTACAAAATCAAATCTTCTAAGA
126245313 TT
1 TT
126245315 GCATATCATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 9 0.43
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.37
Consensus pattern (23 bp):
TTACAAAATCAAATCTTCTAAGA
Found at i:126245305 original size:22 final size:21
Alignment explanation
Indices: 126245269--126245345 Score: 70
Period size: 22 Copynumber: 3.7 Consensus size: 21
126245259 TAAAAGGTAT
* *
126245269 TTACAAATTAAATCTCTAAGA
1 TTACAAATCATATCTCTAAGA
126245290 TTACAAAATCATATCTTCTAAGA
1 TTAC-AAATCATATC-TCTAAGA
* *
126245313 TTGCATATCATA--TCTAAGA
1 TTACAAATCATATCTCTAAGA
*
126245332 TTGC-AATCATATCT
1 TTACAAATCATATCT
126245346 AAGATTGTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.23
20 1 0.02
21 4 0.09
22 15 0.32
23 10 0.21
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.36
Consensus pattern (21 bp):
TTACAAATCATATCTCTAAGA
Found at i:126245362 original size:35 final size:37
Alignment explanation
Indices: 126245299--126245396 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
126245289 ATTACAAAAT
126245299 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
126245335 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
126245370 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
126245397 TAAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:126245404 original size:17 final size:19
Alignment explanation
Indices: 126245306--126245396 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
126245296 AATCATATCT
126245306 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
126245325 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
126245343 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
126245360 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
126245379 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
126245397 TAAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:126245833 original size:45 final size:45
Alignment explanation
Indices: 126245744--126245942 Score: 233
Period size: 45 Copynumber: 4.5 Consensus size: 45
126245734 GGAAGGCGAT
* * *
126245744 ATCTGCTATCTTTGATATGCT-CCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
126245788 ATCTGTTATCTTCGATCTGCTCCCTGTTTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * *
126245833 ATCTGCT-TCTTCAATCTGCTCCCCATCTAATACAGAGATGTCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
126245877 ATCTGTTATC-TCTGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTC-GATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
126245922 ATCTGTCATTTTGGATCTGCT
1 ATCTGTTATCTTCGATCTGCT
126245943 TCGATGTAAA
Statistics
Matches: 130, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
44 57 0.44
45 72 0.55
46 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.34
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:126245869 original size:89 final size:88
Alignment explanation
Indices: 126245761--126245926 Score: 244
Period size: 89 Copynumber: 1.9 Consensus size: 88
126245751 ATCTTTGATA
* * *
126245761 TGCTCCCGTCTAATACAGAGACGCCAAATCTGTTATCT-TCGATCTGCTCCCTGTTTAATACAGA
1 TGCTCCCATCTAATACAGAGACGCCAAATCTGTTATCTCT-GATCTGCTCCCCGTCTAATACAGA
126245825 GACGCCAAATCTGCTTCTTCAATC
65 GACGCCAAATCTGCTTCTTCAATC
* * *
126245849 TGCTCCCCATCTAATACAGAGATGTCAAATCTGTTATCTCTGATTTGCTCCCCGTCTAATACAGA
1 TGCT-CCCATCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGCTCCCCGTCTAATACAGA
*
126245914 GATGCCAAATCTG
65 GACGCCAAATCTG
126245927 TCATTTTGGA
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
88 4 0.06
89 64 0.93
90 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (88 bp):
TGCTCCCATCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGCTCCCCGTCTAATACAGAG
ACGCCAAATCTGCTTCTTCAATC
Found at i:126246087 original size:78 final size:78
Alignment explanation
Indices: 126245956--126246248 Score: 381
Period size: 78 Copynumber: 3.8 Consensus size: 78
126245946 ATGTAAACAC
* ** * * * *
126245956 ATGAAGGTCAAATCTATTATGTCTTCGATCTGTTTCCTGTCTAATACAAAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
126246021 TGGATCTACTTCA
66 TGGATCTGCTTCA
* * *
126246034 AGGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
126246098 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * *
126246112 ATGAAAGTCAGATCTGCTGTGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
126246177 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * ** * **
126246190 ATGAAGGTCAGATCCGCGATGTCTTCGATCTGCTCTTCGTCGAATATGGAGATGCCAAA
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAA
126246249 CCTGTTTCTT
Statistics
Matches: 189, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
77 2 0.01
78 185 0.98
79 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:126254945 original size:17 final size:18
Alignment explanation
Indices: 126254923--126254957 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
126254913 GATATGATAC
*
126254923 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
126254940 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
126254958 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:126255246 original size:22 final size:21
Alignment explanation
Indices: 126255211--126255286 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
126255201 AAAAGGTATC
* *
126255211 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
126255232 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
126255255 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
126255274 TGC-AATCATATCT
1 TACAAATCATATCT
126255287 AAGATTGCAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:126255283 original size:18 final size:19
Alignment explanation
Indices: 126255247--126255301 Score: 103
Period size: 18 Copynumber: 2.9 Consensus size: 19
126255237 AATCATATCT
126255247 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
126255266 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
126255284 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
126255302 TGAAGATTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
18 18 0.51
19 17 0.49
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:126260243 original size:14 final size:15
Alignment explanation
Indices: 126260224--126260262 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
126260214 TTAGAAGTGC
126260224 TTTTTAAAATTATT-
1 TTTTTAAAATTATTA
126260238 TTTTTAAAAATTATTA
1 TTTTT-AAAATTATTA
126260254 TTTTTAAAA
1 TTTTTAAAA
126260263 AAAATTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 5 0.22
15 13 0.57
16 5 0.22
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTTTAAAATTATTA
Found at i:126260247 original size:15 final size:16
Alignment explanation
Indices: 126260224--126260263 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
126260214 TTAGAAGTGC
126260224 TTTTT-AAAATTATT-
1 TTTTTAAAAATTATTA
126260238 TTTTTAAAAATTATTA
1 TTTTTAAAAATTATTA
126260254 TTTTTAAAAA
1 TTTTTAAAAA
126260264 AAATTAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 5 0.21
15 9 0.38
16 10 0.42
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TTTTTAAAAATTATTA
Found at i:126263177 original size:35 final size:35
Alignment explanation
Indices: 126263086--126263180 Score: 172
Period size: 35 Copynumber: 2.7 Consensus size: 35
126263076 CATGGCAAAG
* *
126263086 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
126263121 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
126263156 TGTGAAATGTAGGTATGGTATTATC
1 TGTGAAATGTAGGTATGGTATTATC
126263181 AAATCCATAC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 58 1.00
ACGTcount: A:0.28, C:0.09, G:0.26, T:0.36
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
Found at i:126263226 original size:77 final size:75
Alignment explanation
Indices: 126263086--126263258 Score: 198
Period size: 77 Copynumber: 2.4 Consensus size: 75
126263076 CATGGCAAAG
*** *
126263086 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTATC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAAAAATGTAGGTATGGCATTATC
*
126263146 CATACTGAGC
66 CATACCGAGC
126263156 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAAAAAAATGTAGGTATGGCATT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTT--AAAAAATGTAGGTATGGCATTA
*
126263220 TCCCATACCGAGT
64 T-CCATACCGAGC
**
126263233 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
126263259 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
75 14 0.16
76 5 0.06
77 46 0.53
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAAAAATGTAGGTATGGCATTATC
CATACCGAGC
Found at i:126263246 original size:35 final size:35
Alignment explanation
Indices: 126263090--126263256 Score: 158
Period size: 35 Copynumber: 4.6 Consensus size: 35
126263080 GCAAAGTGTG
* **
126263090 AAATGTAGGTATGGTATCAT-CCATACTGAGTTGTG
1 AAATGTAGGTATGGTAT-TTCCCATACTGAGTTGAA
* **
126263125 AAATGTAGGTATGGTATTAT-CCATACTGAGCTGTG
1 AAATGTAGGTATGGTATT-TCCCATACTGAGTTGAA
*
126263160 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAAAA
1 AAATGTAGGTATGGTATT-TC----CCATACTGAGTT--GAA
* *
126263202 AAATGTAGGTATGGCATTTCCCATACCGAGTTGAA
1 AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
126263237 AAATGTAGGTATGGTATTTC
1 AAATGTAGGTATGGTATTTC
126263257 AATGAGGAAA
Statistics
Matches: 114, Mismatches: 10, Indels: 16
0.81 0.07 0.11
Matches are distributed among these distances:
35 73 0.64
37 11 0.10
40 11 0.10
41 2 0.02
42 17 0.15
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
Found at i:126265757 original size:5 final size:5
Alignment explanation
Indices: 126265747--126265784 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
126265737 AAACTATAAC
126265747 TATTT TATTT TATTT TATTT TATTT TATTT TATTT TAT
1 TATTT TATTT TATTT TATTT TATTT TATTT TATTT TAT
126265785 AATAAGAAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TATTT
Found at i:126266606 original size:110 final size:111
Alignment explanation
Indices: 126266407--126266628 Score: 428
Period size: 110 Copynumber: 2.0 Consensus size: 111
126266397 TACATAACCA
126266407 TAATCAACCAACTAACCAAACTCATGAAGTTCACTAGACTTAGGTACATGCCATTTACATCTCAA
1 TAATCAACCAACTAACCAAACTCATGAAGTTCACTAGACTTAGGTACATGCCATTTACATCTCAA
*
126266472 AATTCAAAAGAGCAATACAGTCACTAGAGTATAATACAATGGGGTT
66 AATTCAAAAGAGCAATACAATCACTAGAGTATAATACAATGGGGTT
126266518 TAATCAACCAACTAACCAAACTCATGAAG-TCACTAGACTTAGGTACATGCCATTTACATCTCAA
1 TAATCAACCAACTAACCAAACTCATGAAGTTCACTAGACTTAGGTACATGCCATTTACATCTCAA
126266582 AATTCAAAAGAGCAATACAATCACTAGAGTATAATACAATGGGGTT
66 AATTCAAAAGAGCAATACAATCACTAGAGTATAATACAATGGGGTT
126266628 T
1 T
126266629 TATGGTATGT
Statistics
Matches: 110, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
110 81 0.74
111 29 0.26
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.25
Consensus pattern (111 bp):
TAATCAACCAACTAACCAAACTCATGAAGTTCACTAGACTTAGGTACATGCCATTTACATCTCAA
AATTCAAAAGAGCAATACAATCACTAGAGTATAATACAATGGGGTT
Found at i:126266608 original size:55 final size:55
Alignment explanation
Indices: 126266437--126266609 Score: 149
Period size: 55 Copynumber: 3.1 Consensus size: 55
126266427 CTCATGAAGT
126266437 TCACTAGACTTAGGTACATGCCATTTACATCTCAAAATTCAAAAGAGCAATACAG
1 TCACTAGACTTAGGTACATGCCATTTACATCTCAAAATTCAAAAGAGCAATACAG
* * *** * * * * * **
126266492 TCACTAGAGTATA-ATACAATGGGGTTTA-ATCAACCAACTAACCAAA-CTC-ATGA-AG
1 TCACTAGACT-TAGGTAC-ATGCCATTTACATC-TCAAAAT-TCAAAAGAGCAAT-ACAG
*
126266547 TCACTAGACTTAGGTACATGCCATTTACATCTCAAAATTCAAAAGAGCAATACAA
1 TCACTAGACTTAGGTACATGCCATTTACATCTCAAAATTCAAAAGAGCAATACAG
126266602 TCACTAGA
1 TCACTAGA
126266610 GTATAATACA
Statistics
Matches: 83, Mismatches: 25, Indels: 20
0.65 0.20 0.16
Matches are distributed among these distances:
53 4 0.05
54 15 0.18
55 45 0.54
56 15 0.18
57 4 0.05
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.25
Consensus pattern (55 bp):
TCACTAGACTTAGGTACATGCCATTTACATCTCAAAATTCAAAAGAGCAATACAG
Found at i:126269724 original size:131 final size:132
Alignment explanation
Indices: 126269482--126269764 Score: 408
Period size: 131 Copynumber: 2.2 Consensus size: 132
126269472 TTATTCATTC
* * * **
126269482 AAAAATTCTTCAAAACGAAGGCGAGATTCGATGTTTGGCAATTTGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATCCGCGGAATCGTGCCCTAACGTG
* *
126269547 TTAGGTTGCAATTTCGCGTTTGCTCGAAATAATCGAATATCACTTCAAAATTTCACTCATGCCTT
66 TTAGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATACCTT
126269612 -T
131 CT
* *
126269613 TAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATCCGCGGAATCGTGCCCTAATGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATCCGCGGAATCGTGCCCTAACGTG
* * * *
126269678 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATC-AAGTATCCCTTCAAAATTTCATTCATATCT
66 TTAGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAA-TATCACTTCAAAATTTCACTCATACCT
126269742 TCT
130 TCT
* *
126269745 AAAAATTATTTAAAACGAAG
1 AAAAATTCTTCAAAACGAAG
126269765 GCAATATTTG
Statistics
Matches: 134, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
130 2 0.01
131 114 0.85
132 18 0.13
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (132 bp):
AAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATCCGCGGAATCGTGCCCTAACGTG
TTAGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATACCTT
CT
Found at i:126269795 original size:131 final size:131
Alignment explanation
Indices: 126269482--126269838 Score: 346
Period size: 131 Copynumber: 2.7 Consensus size: 131
126269472 TTATTCATTC
* * * ** * ** * *
126269482 AAAAATTCTTCAAAACGAAGGCGAGATTCGATGTTTGGCAATTTGCGGAATCGTGCCCTAACGTG
1 AAAAATTATTCAAAACGAAGACAAGATTCGACATTTAGCAATCCGCAGAATCGTGCCCTAATGTG
* * *
126269547 TTAGGTTGCAATTTCGCGTTTGCTCGAAATAATCGAATATCACTTCAAAATTTCACTCATGCCTT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATACCTT
126269612 T
131 T
* * * * *
126269613 TAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATCCGCGGAATCGTGCCCTAATGTG
1 AAAAATTATTCAAAACGAAGACAAGATTCGACATTTAGCAATCCGCAGAATCGTGCCCTAATGTG
* * *
126269678 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATC-AAGTATCCCTTCAAAATTTCATTCATATCT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAA-TATCACTTCAAAATTTCACTCATACCT
126269742 TCT
130 T-T
* * * * * * * *
126269745 AAAAATTATTTAAAACGAAGGCAATATTTGGCGTTT-GACAATTCG-AGAATCATGCCCT-ATCG
1 AAAAATTATTCAAAACGAAGACAAGATTCGACATTTAG-CAATCCGCAGAATCGTGCCCTAAT-G
* * *
126269807 TGCTGGGTTGTGAA-TTCTCGTTTGCTCAAAAT
64 TGTTGGGTTG-CAATTTCGCGTTTGCTCAAAAT
126269839 GATCTAACAT
Statistics
Matches: 192, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
130 4 0.02
131 153 0.80
132 35 0.18
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (131 bp):
AAAAATTATTCAAAACGAAGACAAGATTCGACATTTAGCAATCCGCAGAATCGTGCCCTAATGTG
TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATACCTT
T
Found at i:126274060 original size:18 final size:18
Alignment explanation
Indices: 126274039--126274099 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 18
126274029 AATTTGGATT
126274039 TTTTTAAAAATTTATATA
1 TTTTTAAAAATTTATATA
* *
126274057 TTTTT-TAAA-TTATTTA
1 TTTTTAAAAATTTATATA
*
126274073 TTTTTATATAATTATATATCA
1 TTTTTA-AAAATT-TATAT-A
126274094 TTTTTA
1 TTTTTA
126274100 GTTTATATAG
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
16 11 0.33
17 3 0.09
18 7 0.21
19 1 0.03
20 4 0.12
21 7 0.21
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTTAAAAATTTATATA
Found at i:126274074 original size:16 final size:18
Alignment explanation
Indices: 126274050--126274091 Score: 61
Period size: 16 Copynumber: 2.4 Consensus size: 18
126274040 TTTTAAAAAT
126274050 TTATATATTTTT-TA-AA
1 TTATATATTTTTATATAA
*
126274066 TTATTTATTTTTATATAA
1 TTATATATTTTTATATAA
126274084 TTATATAT
1 TTATATAT
126274092 CATTTTTAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 11 0.50
17 2 0.09
18 9 0.41
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TTATATATTTTTATATAA
Done.