Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 406 of 438
Found at i:126276283 original size:37 final size:37
Alignment explanation
Indices: 126276233--126276308 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
126276223 CTGACTTCAC
126276233 CACACGGCCACAAGGTCGAGACACACGCCTTTGTGCT
1 CACACGGCCACAAGGTCGAGACACACGCCTTTGTGCT
126276270 CACACGGCCACAAGGTCGAGACACACGCCTTTGTGCT
1 CACACGGCCACAAGGTCGAGACACACGCCTTTGTGCT
126276307 CA
1 CA
126276309 ACCGTGTGGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.25, C:0.36, G:0.24, T:0.16
Consensus pattern (37 bp):
CACACGGCCACAAGGTCGAGACACACGCCTTTGTGCT
Found at i:126286432 original size:17 final size:16
Alignment explanation
Indices: 126286406--126286440 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
126286396 CCACACGGGC
*
126286406 TGAGCACACGTCCATG
1 TGAGCACACGCCCATG
126286422 TGAGCCACACGCCCATG
1 TGAG-CACACGCCCATG
126286439 TG
1 TG
126286441 GTAGCCCGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.23, C:0.34, G:0.26, T:0.17
Consensus pattern (16 bp):
TGAGCACACGCCCATG
Found at i:126293372 original size:17 final size:17
Alignment explanation
Indices: 126293346--126293385 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
126293336 CTATTTCCCC
126293346 TTTTCCTCATTCTT-TCT
1 TTTTCCTCATT-TTCTCT
*
126293363 TTTTCTTCATTTTCTCT
1 TTTTCCTCATTTTCTCT
126293380 TTTTCC
1 TTTTCC
126293386 CTTTTGCTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 2 0.10
17 18 0.90
ACGTcount: A:0.05, C:0.28, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTCCTCATTTTCTCT
Found at i:126293803 original size:26 final size:24
Alignment explanation
Indices: 126293746--126293835 Score: 103
Period size: 26 Copynumber: 3.6 Consensus size: 24
126293736 TTATTTTTCT
*
126293746 TTATTATTAT-TATTATTATAATTA
1 TTATTATTATCTATTATTATTA-TA
*
126293770 TTATTATTATCTATTATTGTTCCATA
1 TTATTATTATCTATTATTATT--ATA
126293796 TTATTATTATCATCATTATTATTATA
1 TTATTATTATC-T-ATTATTATTATA
126293822 TTATTATTAT-TATT
1 TTATTATTATCTATT
126293836 TATTTATCAT
Statistics
Matches: 58, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
23 3 0.05
24 11 0.19
25 8 0.14
26 26 0.45
27 2 0.03
28 8 0.14
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.61
Consensus pattern (24 bp):
TTATTATTATCTATTATTATTATA
Found at i:126293860 original size:3 final size:3
Alignment explanation
Indices: 126293746--126293835 Score: 103
Period size: 3 Copynumber: 29.7 Consensus size: 3
126293736 TTATTTTTCT
* *
126293746 TTA TTA TTA TTA TTA TTA TAA TTA TTA TTA TTA TCTA TTA TTG TTCCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TT--A
* *
126293794 -TA TTA TTA TTA TCA TCA TTA TTA TTA -TA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
126293836 TATTTATCAT
Statistics
Matches: 76, Mismatches: 6, Indels: 10
0.83 0.07 0.11
Matches are distributed among these distances:
2 3 0.04
3 69 0.91
4 4 0.05
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:126295530 original size:6 final size:6
Alignment explanation
Indices: 126295515--126295594 Score: 115
Period size: 6 Copynumber: 13.3 Consensus size: 6
126295505 ATTGAGTCCA
* * * **
126295515 TTTATC TTTATG TTTATT TTTATT TTTATT TTTATC TTTAAC TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
126295563 TTTATT TTTATT TTTATT TTTATT TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TT
126295595 GTCTTTATAT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 68 1.00
ACGTcount: A:0.17, C:0.04, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:126295607 original size:18 final size:17
Alignment explanation
Indices: 126295527--126295607 Score: 65
Period size: 18 Copynumber: 4.6 Consensus size: 17
126295517 TATCTTTATG
126295527 TTTAT-TTTTATTTTTA
1 TTTATATTTTATTTTTA
* **
126295543 TTTTTATCTTTAACTTTA
1 TTTATAT-TTTATTTTTA
*
126295561 TTTTTATTTTTATTTTTA
1 TTTATA-TTTTATTTTTA
* *
126295579 TTTTTATTTTTATTTTGTC
1 TTTATA-TTTTATTTT-TA
126295598 TTTATATTTT
1 TTTATATTTT
126295608 GAATTCTATT
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
16 4 0.07
17 1 0.02
18 42 0.78
19 7 0.13
ACGTcount: A:0.17, C:0.04, G:0.01, T:0.78
Consensus pattern (17 bp):
TTTATATTTTATTTTTA
Found at i:126300180 original size:63 final size:63
Alignment explanation
Indices: 126300081--126300207 Score: 218
Period size: 63 Copynumber: 2.0 Consensus size: 63
126300071 ATCTCCGTCA
*
126300081 GGATCATCTTCGACTGGTCTTAATGGTGCACATGAGCCTAGTCCTCTAACTAGTGATACTGTC
1 GGATCATCTTCGACTGGTCTTAATAGTGCACATGAGCCTAGTCCTCTAACTAGTGATACTGTC
* * *
126300144 GGATCGTCTTCGACTGGTCTTACTAGTGCACATGAGCCTAGTCCTCTGACTAGTGATACTGTC
1 GGATCATCTTCGACTGGTCTTAATAGTGCACATGAGCCTAGTCCTCTAACTAGTGATACTGTC
126300207 G
1 G
126300208 AGTCCTTATG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (63 bp):
GGATCATCTTCGACTGGTCTTAATAGTGCACATGAGCCTAGTCCTCTAACTAGTGATACTGTC
Found at i:126312147 original size:6 final size:6
Alignment explanation
Indices: 126312129--126312323 Score: 351
Period size: 6 Copynumber: 33.0 Consensus size: 6
126312119 CTAAATATCC
*
126312129 TTGTTA TTATTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA
1 TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA
126312177 TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA
1 TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA
126312225 TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA
1 TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA
*
126312273 TTGTTA TTGTTA TTGTTA TTATTA TTGTTA ---TTA TTGTTA TTGTTA
1 TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA
126312318 TTGTTA
1 TTGTTA
126312324 CTCTATATCC
Statistics
Matches: 182, Mismatches: 4, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
3 3 0.02
6 179 0.98
ACGTcount: A:0.18, C:0.00, G:0.15, T:0.67
Consensus pattern (6 bp):
TTGTTA
Found at i:126312554 original size:25 final size:24
Alignment explanation
Indices: 126312502--126312557 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
126312492 TAGTCAATTT
126312502 TTTTA-ATATATATTATATGAATA
1 TTTTATATATATATTATATGAATA
* *
126312525 ATTTATATATAATATTATGT-ATATA
1 TTTTATATAT-ATATTATATGA-ATA
126312550 TTTTATAT
1 TTTTATAT
126312558 TATCAGTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 4 0.15
24 5 0.19
25 18 0.67
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (24 bp):
TTTTATATATATATTATATGAATA
Found at i:126315309 original size:34 final size:34
Alignment explanation
Indices: 126315199--126315314 Score: 126
Period size: 35 Copynumber: 3.4 Consensus size: 34
126315189 ATAGCTTTAG
* * *
126315199 TTTTTT-CCCAAATCAGTTTATCTGAAATCCCTTAC
1 TTTTTTCCCCAAATCAGTTT-CCT-CAATCCCTTAA
* * * *
126315234 TTTTTTCCCCAATTCATTTTCCCCAAATCCCTTAG
1 TTTTTTCCCCAAATCAGTTTCCTC-AATCCCTTAA
*
126315269 TCTTTTCCCCAAATCAGTTTCCTCAATCCCTTAA
1 TTTTTTCCCCAAATCAGTTTCCTCAATCCCTTAA
126315303 TTTTTTCCCCAA
1 TTTTTTCCCCAA
126315315 TGTCTGCTAC
Statistics
Matches: 67, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
34 20 0.30
35 36 0.54
36 11 0.16
ACGTcount: A:0.22, C:0.32, G:0.03, T:0.42
Consensus pattern (34 bp):
TTTTTTCCCCAAATCAGTTTCCTCAATCCCTTAA
Found at i:126315352 original size:25 final size:25
Alignment explanation
Indices: 126315324--126315416 Score: 107
Period size: 25 Copynumber: 3.8 Consensus size: 25
126315314 ATGTCTGCTA
*
126315324 CATCACCATCAATAGTCCTCTACCG
1 CATCGCCATCAATAGTCCTCTACCG
* * ** *
126315349 CATCGCTACCAGCAGTCTTCTACCG
1 CATCGCCATCAATAGTCCTCTACCG
126315374 CATCGCCATCAATAGT-CTCTACCG
1 CATCGCCATCAATAGTCCTCTACCG
* *
126315398 CATCGCTATCGATAGTCCT
1 CATCGCCATCAATAGTCCT
126315417 TTGCTGTATC
Statistics
Matches: 54, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
24 21 0.39
25 33 0.61
ACGTcount: A:0.24, C:0.38, G:0.13, T:0.26
Consensus pattern (25 bp):
CATCGCCATCAATAGTCCTCTACCG
Found at i:126320510 original size:37 final size:38
Alignment explanation
Indices: 126320437--126320514 Score: 113
Period size: 39 Copynumber: 2.1 Consensus size: 38
126320427 GAGCTTGTTT
* *
126320437 TATATATGGTTCCTTTGATCACTATCTTTTTCAGATTTC
1 TATATATGGCTCCTTTGATCACTATC-TTTACAGATTTC
*
126320476 TATATATGGCTCCTTTGATCACTATC-TTAGAGATTTC
1 TATATATGGCTCCTTTGATCACTATCTTTACAGATTTC
126320513 TA
1 TA
126320515 GGAGAAATCT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 11 0.31
39 25 0.69
ACGTcount: A:0.23, C:0.18, G:0.12, T:0.47
Consensus pattern (38 bp):
TATATATGGCTCCTTTGATCACTATCTTTACAGATTTC
Found at i:126324043 original size:25 final size:25
Alignment explanation
Indices: 126324008--126324064 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
126323998 GGACACACCA
*
126324008 CAGCTCGCATGAGTTTTCT-GTTATT
1 CAGCTCACATGA-TTTTCTCGTTATT
*
126324033 TAGCTCACATGATTTTCTCGTTATT
1 CAGCTCACATGATTTTCTCGTTATT
126324058 CAGCTCA
1 CAGCTCA
126324065 GAATAGCTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 6 0.21
25 22 0.79
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (25 bp):
CAGCTCACATGATTTTCTCGTTATT
Found at i:126327174 original size:18 final size:18
Alignment explanation
Indices: 126327151--126327185 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
126327141 CCAACAGAAT
126327151 GAGGATGAATC-TAATGAA
1 GAGGATG-ATCTTAATGAA
126327169 GAGGATGATCTTAATGA
1 GAGGATGATCTTAATGA
126327186 TGCGGACTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.40, C:0.06, G:0.29, T:0.26
Consensus pattern (18 bp):
GAGGATGATCTTAATGAA
Found at i:126330451 original size:26 final size:26
Alignment explanation
Indices: 126330414--126330497 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
126330404 TGAAACAAAT
* *
126330414 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
126330440 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
126330466 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
126330492 TGATAA
1 TGATAA
126330498 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:126332023 original size:26 final size:26
Alignment explanation
Indices: 126331971--126332023 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
126331961 TTTACAGTTT
*
126331971 TACCCCTAGGAGATAAATTATCGAAA
1 TACCCCTAGGAGATAAATTACCGAAA
* *
126331997 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGAGATAAATT-ACCGAAA
126332023 T
1 T
126332024 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGAGATAAATTACCGAAA
Found at i:126336260 original size:18 final size:19
Alignment explanation
Indices: 126336227--126336266 Score: 64
Period size: 18 Copynumber: 2.1 Consensus size: 19
126336217 CAAATTAGTA
126336227 AAAATAATGCATTTTTAATT
1 AAAATAAT-CATTTTTAATT
126336247 AAAATAAT-ATTTTTAATT
1 AAAATAATCATTTTTAATT
126336265 AA
1 AA
126336267 GTTTCCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 12 0.60
20 8 0.40
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (19 bp):
AAAATAATCATTTTTAATT
Found at i:126337747 original size:87 final size:86
Alignment explanation
Indices: 126337644--126338016 Score: 330
Period size: 87 Copynumber: 4.3 Consensus size: 86
126337634 TTTAAGGGGT
* * * * * *
126337644 AAAAAGTC-CTCAAATTTTTTTAAAAAATATTTAAGCTGCT-TTTTTTTTTTGCATTCATTTAGG
1 AAAAAGACTCTCAAA-TTTTTAAAAAAATAATTAAGCT-CTATTTTTTTTTTGCACTCAATTGGG
* *
126337707 TACTTTAACTTTCAAGATGCATA
64 TACTTGAACTTTCAAAATGCATA
* * * * * *
126337730 AAAAATACTCTCAAATTTTCAAAAAAACAATTAAGCCCCTACTATTTTTTTGCACTCAATTGGGT
1 AAAAAGACTCTCAAATTTTTAAAAAAATAATTAAG-CTCTATTTTTTTTTTGCACTCAATTGGGT
*
126337795 ACTTGAACTTTCAAAATGCATC
65 ACTTGAACTTTCAAAATGCATA
* * * ** * *
126337817 AAAAAGACTTTCAAACTTTT-CAAAAA-AA--ACCCT-TGTTTTTTTTTTGCACTCATTTGGGTA
1 AAAAAGACTCTCAAATTTTTAAAAAAATAATTAAGCTCTATTTTTTTTTTGCACTCAATTGGGTA
*
126337877 CTTGAACTTTCAAAATACATA
66 CTTGAACTTTCAAAATGCATA
* *
126337898 AAAAATG-CTCTCAAATCTTTTAAAGAAAATAATTAAGCCTCTACTTTTTTTTTTTCATTCAATT
1 AAAAA-GACTCTCAAAT-TTTTAAA-AAAATAATTAAG-CTCTA-TTTTTTTTTTGCACTCAATT
** *
126337962 GGACACTTGAACTTTCAAAATGTATA
61 GGGTACTTGAACTTTCAAAATGCATA
* *
126337988 AAAAAGACCCTTAAACTTTTTCAAAAAAA
1 AAAAAGACTCTCAAA-TTTTT-AAAAAAA
126338017 GTAACAAAGC
Statistics
Matches: 227, Mismatches: 44, Indels: 28
0.76 0.15 0.09
Matches are distributed among these distances:
81 54 0.24
82 6 0.03
83 2 0.01
84 4 0.02
85 4 0.02
86 29 0.13
87 62 0.27
88 2 0.01
89 2 0.01
90 58 0.26
91 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.08, T:0.38
Consensus pattern (86 bp):
AAAAAGACTCTCAAATTTTTAAAAAAATAATTAAGCTCTATTTTTTTTTTGCACTCAATTGGGTA
CTTGAACTTTCAAAATGCATA
Found at i:126337886 original size:81 final size:84
Alignment explanation
Indices: 126337684--126338014 Score: 294
Period size: 81 Copynumber: 3.8 Consensus size: 84
126337674 TTAAGCTGCT
* * * * *
126337684 TTTTTTTTTTGCATTCATTTAGGTACTTTAACTTTCAAGATGCATAAAAAATACTCTCAAATTTT
1 TTTTTTTTTTGCACTCATTTGGGTACTTGAACTTTCAAAATGCATAAAAAAGACTCTCAAATTTT
126337749 CAAAAAAACAATTAAGCCCCTA
66 C--AAAAACAA-TAAGCCCCTA
* * * * *
126337771 CTATTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGACTTTCAAACTTT
1 TTTTTTTTTTGCACTCATTTGGGTACTTGAACTTTCAAAATGCATAAAAAAGACTCTCAAA-TTT
* *
126337836 TC-AAAA-AA-AA-CCCTTG
65 TCAAAAACAATAAGCCCCTA
*
126337852 TTTTTTTTTTGCACTCATTTGGGTACTTGAACTTTCAAAATACATAAAAAATG-CTCTCAAATCT
1 TTTTTTTTTTGCACTCATTTGGGTACTTGAACTTTCAAAATGCATAAAAAA-GACTCTCAAA--T
* * *
126337916 TTTAAAGAAAATAATTAAGCCTCTA
63 TTT-CA-AAAACAA-TAAGCCCCTA
* * * ** * * *
126337941 CTTTTTTTTTTTCATTCAATTGGACACTTGAACTTTCAAAATGTATAAAAAAGACCCTTAAACTT
1 -TTTTTTTTTTGCACTCATTTGGGTACTTGAACTTTCAAAATGCATAAAAAAGACTCTCAAA--T
126338006 TTTCAAAAA
63 TTTCAAAAA
126338015 AAGTAACAAA
Statistics
Matches: 198, Mismatches: 34, Indels: 23
0.78 0.13 0.09
Matches are distributed among these distances:
81 57 0.29
82 8 0.04
84 2 0.01
85 8 0.04
86 2 0.01
87 51 0.26
88 11 0.06
89 5 0.03
90 54 0.27
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.38
Consensus pattern (84 bp):
TTTTTTTTTTGCACTCATTTGGGTACTTGAACTTTCAAAATGCATAAAAAAGACTCTCAAATTTT
CAAAAACAATAAGCCCCTA
Found at i:126338493 original size:16 final size:16
Alignment explanation
Indices: 126338448--126338496 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 16
126338438 TTTTATAAAA
126338448 TTTTACAATATTTTATTTT
1 TTTTAC-AT-TTTTA-TTT
*
126338467 TTTTA-AATTTTATTT
1 TTTTACATTTTTATTT
126338482 TTTTACATTTTTATT
1 TTTTACATTTTTATT
126338497 AAAATTTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 8 0.30
16 13 0.48
17 1 0.04
19 5 0.19
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTACATTTTTATTT
Found at i:126339381 original size:13 final size:13
Alignment explanation
Indices: 126339347--126339381 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
126339337 AATATTAATT
126339347 AATTTAA-TTTAA
1 AATTTAATTTTAA
126339359 AATTTAAATTTTAA
1 AATTT-AATTTTAA
126339373 AATTTAATT
1 AATTTAATT
126339382 CCTAAAAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.24
13 6 0.29
14 10 0.48
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
AATTTAATTTTAA
Found at i:126341508 original size:12 final size:12
Alignment explanation
Indices: 126341491--126341536 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
126341481 TTTTGATTTA
126341491 AAAAAAAGGAAT
1 AAAAAAAGGAAT
** *
126341503 AAAAAAAAAAAG
1 AAAAAAAGGAAT
126341515 AAGAAAAAGGAAT
1 AA-AAAAAGGAAT
126341528 AAAAAAAGG
1 AAAAAAAGG
126341537 GGGAAAAAGT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
12 18 0.67
13 9 0.33
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.04
Consensus pattern (12 bp):
AAAAAAAGGAAT
Found at i:126344129 original size:30 final size:31
Alignment explanation
Indices: 126344072--126344145 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 31
126344062 GGCCTAATTT
**
126344072 AAATTTTCAAAAAATCTAGAGGATTTAATGA
1 AAATTTTCAAAAAAAATAGAGGATTTAATGA
* * *
126344103 GAATTTTCAAAAAAAATTGAGG-TTTAATTA
1 AAATTTTCAAAAAAAATAGAGGATTTAATGA
126344133 AAATTTT-AAAAAA
1 AAATTTTCAAAAAA
126344146 TTTAAGGGCT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 6 0.16
30 13 0.35
31 18 0.49
ACGTcount: A:0.51, C:0.04, G:0.11, T:0.34
Consensus pattern (31 bp):
AAATTTTCAAAAAAAATAGAGGATTTAATGA
Found at i:126348761 original size:17 final size:18
Alignment explanation
Indices: 126348739--126348795 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
126348729 CAAAAATTCT
* *
126348739 AAAATT-TATATTTTAAA
1 AAAATTATAAATTTCAAA
126348756 AAAATTATAAATTTCAAA
1 AAAATTATAAATTTCAAA
* * *
126348774 AATATATAAAAATTTTAAA
1 AAAAT-TATAAATTTCAAA
126348793 AAA
1 AAA
126348796 TAATTTTAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
17 6 0.19
18 13 0.41
19 13 0.41
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
AAAATTATAAATTTCAAA
Found at i:126348761 original size:53 final size:50
Alignment explanation
Indices: 126348712--126348808 Score: 115
Period size: 51 Copynumber: 1.9 Consensus size: 50
126348702 TTAAATTTTG
**
126348712 AAAATT-AAAAATATTTACAAAAATTCTAAAATTTATATTTTAAAAAAATTAT
1 AAAATTCAAAAATA--TACAAAAATTCTAAAAAATA-ATTTTAAAAAAATTAT
* * *
126348764 AAATTTCAAAAATATATAAAAATTTTAAAAAATAATTTTAAAAAA
1 AAAATTCAAAAATATACAAAAATTCTAAAAAATAATTTTAAAAAA
126348809 TAATAATTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
50 11 0.28
51 16 0.41
52 5 0.13
53 7 0.18
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (50 bp):
AAAATTCAAAAATATACAAAAATTCTAAAAAATAATTTTAAAAAAATTAT
Found at i:126348802 original size:13 final size:13
Alignment explanation
Indices: 126348784--126348812 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
126348774 AATATATAAA
126348784 AATTTTAAAAAAT
1 AATTTTAAAAAAT
126348797 AATTTTAAAAAAT
1 AATTTTAAAAAAT
126348810 AAT
1 AAT
126348813 AATTTTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AATTTTAAAAAAT
Found at i:126352397 original size:16 final size:16
Alignment explanation
Indices: 126352376--126352406 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
126352366 AACTTCTTGT
126352376 ATTTCATGTAATATTC
1 ATTTCATGTAATATTC
*
126352392 ATTTCATGTCATATT
1 ATTTCATGTAATATT
126352407 TTTATATCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.13, G:0.06, T:0.52
Consensus pattern (16 bp):
ATTTCATGTAATATTC
Found at i:126357613 original size:19 final size:19
Alignment explanation
Indices: 126357589--126357640 Score: 79
Period size: 19 Copynumber: 2.8 Consensus size: 19
126357579 TGTTTTACTA
126357589 TCTAAATTAATAATTCCAT
1 TCTAAATTAATAATTCCAT
126357608 TCTAAATTAATAATTCCAT
1 TCTAAATTAATAATTCCAT
* *
126357627 T-TAATTTATTAATT
1 TCTAAATTAATAATT
126357641 TAGATAAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
18 11 0.35
19 20 0.65
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (19 bp):
TCTAAATTAATAATTCCAT
Found at i:126357957 original size:41 final size:41
Alignment explanation
Indices: 126357875--126358074 Score: 240
Period size: 41 Copynumber: 4.8 Consensus size: 41
126357865 GACCTTGAGT
* *
126357875 CTAGCAAGTTTCGTGCCGGTGAGTTTATATCAAGCGT-TGTGC
1 CTAGCAGGCTTCGTGCCGGTGA-TTTATATCAAGC-TCTGTGC
* *
126357917 TTAGCAGGCTTCGTGCCGGTGATTTATATCAGGCTCTGTGC
1 CTAGCAGGCTTCGTGCCGGTGATTTATATCAAGCTCTGTGC
* *
126357958 CTAGCAGGCTTCGTGCCAGTGATTTATGTCAAGCTCTGTGC
1 CTAGCAGGCTTCGTGCCGGTGATTTATATCAAGCTCTGTGC
* * ** *
126357999 TTAGCAGGCTCCGTGCTAGTGATTTATATCAAGTTCTGTGC
1 CTAGCAGGCTTCGTGCCGGTGATTTATATCAAGCTCTGTGC
* * *
126358040 CTAGCAGGCTTTGTGCCGGTGTAATTGTATCAAGC
1 CTAGCAGGCTTCGTGCCGGTG-ATTTATATCAAGC
126358075 CTTGAGCTTG
Statistics
Matches: 135, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
40 1 0.01
41 105 0.78
42 29 0.21
ACGTcount: A:0.18, C:0.21, G:0.28, T:0.34
Consensus pattern (41 bp):
CTAGCAGGCTTCGTGCCGGTGATTTATATCAAGCTCTGTGC
Found at i:126366128 original size:14 final size:14
Alignment explanation
Indices: 126366102--126366134 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
126366092 CCTCCCGATA
126366102 ATTATTGATTCCAT
1 ATTATTGATTCCAT
126366116 -TTATTGCATTCCAT
1 ATTATTG-ATTCCAT
126366130 ATTAT
1 ATTAT
126366135 AGGTCTTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 6 0.35
14 7 0.41
15 4 0.24
ACGTcount: A:0.27, C:0.15, G:0.06, T:0.52
Consensus pattern (14 bp):
ATTATTGATTCCAT
Found at i:126368796 original size:15 final size:15
Alignment explanation
Indices: 126368776--126368805 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
126368766 GAAGAATGCA
126368776 ACAAACATGGGTATT
1 ACAAACATGGGTATT
126368791 ACAAACATGGGTATT
1 ACAAACATGGGTATT
126368806 GAGTTGTAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (15 bp):
ACAAACATGGGTATT
Found at i:126373311 original size:50 final size:50
Alignment explanation
Indices: 126373236--126373335 Score: 173
Period size: 50 Copynumber: 2.0 Consensus size: 50
126373226 TACACCAAAA
126373236 TACCTCTTATTCATCTGTCTCCATATCACATACAAATATGCACTCCAAGC
1 TACCTCTTATTCATCTGTCTCCATATCACATACAAATATGCACTCCAAGC
* * *
126373286 TACCTCTTGTTCCTTTGTCTCCATATCACATACAAATATGCACTCCAAGC
1 TACCTCTTATTCATCTGTCTCCATATCACATACAAATATGCACTCCAAGC
126373336 AAGCTTCAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.28, C:0.32, G:0.07, T:0.33
Consensus pattern (50 bp):
TACCTCTTATTCATCTGTCTCCATATCACATACAAATATGCACTCCAAGC
Found at i:126383327 original size:3 final size:3
Alignment explanation
Indices: 126383319--126383366 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
126383309 GAAATAAGAG
* *
126383319 TAA TAA TAA TAA TAA TAA CAA TAG TAA TAA TAA -AA TAA TTAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
126383363 TAA T
1 TAA T
126383367 GTAAAGGAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
2 4 0.11
3 31 0.82
4 3 0.08
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:126393285 original size:43 final size:43
Alignment explanation
Indices: 126393181--126393327 Score: 161
Period size: 43 Copynumber: 3.4 Consensus size: 43
126393171 TATCCCGTAT
* * * * *
126393181 ATGGTCTTACATGTTATCACATATCGATGCCACTGTCCTAGAC
1 ATGGTCTTACATGTAATCATATAACGATGCCAATGTCCCAGAC
* * * * *
126393224 AGGGTCTTATACGAAATCATATAACGATGGCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCATATAACGATGCCAATGTCCCAGAC
* * *
126393267 ATGGTCTTACATGTAATCATAGT-ACAATGCCAATTTCTCAGAC
1 ATGGTCTTACATGTAATCATA-TAACGATGCCAATGTCCCAGAC
126393310 ATGGTCTTACATGTAATC
1 ATGGTCTTACATGTAATC
126393328 TCATCTCGGT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
43 84 0.99
44 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCATATAACGATGCCAATGTCCCAGAC
Found at i:126395117 original size:43 final size:43
Alignment explanation
Indices: 126395018--126395128 Score: 143
Period size: 43 Copynumber: 2.6 Consensus size: 43
126395008 CTGTAGCAGT
* *
126395018 GCTTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGAC
1 GCTTTTCCCACAAACGCCGCTAAAGAACATGACATTTAACGAC
* * **
126395061 GCTTTTCCCACAAATGCCGCTAAAGAACATGACATTTAATGGT
1 GCTTTTCCCACAAACGCCGCTAAAGAACATGACATTTAACGAC
*
126395104 G-TTTTCTCTACAAACGCCGCTAAAG
1 GCTTTTC-CCACAAACGCCGCTAAAG
126395129 GTCATGTTAC
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
42 5 0.08
43 54 0.92
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (43 bp):
GCTTTTCCCACAAACGCCGCTAAAGAACATGACATTTAACGAC
Found at i:126395551 original size:66 final size:66
Alignment explanation
Indices: 126395466--126395599 Score: 182
Period size: 66 Copynumber: 2.0 Consensus size: 66
126395456 ATTCTAAAGA
* *
126395466 TGTAGCTGGAGTTCCTCATATTTTCTACTT-GCCTCTGCTTCCCTCT-CTGCTGCCTCCACTTTA
1 TGTAGCTGGAGTTCCTCATATTTTCT-CTTAGCCTCTGCTTCCCT-TGATGCCGCCTCCACTTTA
126395529 AGT
64 AGT
** * *
126395532 TGTAGCTGGAGTTTTTCATATTTTCTTTTAGCCTCTGCTTCTCTTGATGCCGCCTCCACTTTAAG
1 TGTAGCTGGAGTTCCTCATATTTTCTCTTAGCCTCTGCTTCCCTTGATGCCGCCTCCACTTTAAG
126395597 T
66 T
126395598 TG
1 TG
126395600 AGCAATTTGC
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
65 3 0.05
66 57 0.95
ACGTcount: A:0.13, C:0.28, G:0.16, T:0.43
Consensus pattern (66 bp):
TGTAGCTGGAGTTCCTCATATTTTCTCTTAGCCTCTGCTTCCCTTGATGCCGCCTCCACTTTAAG
T
Found at i:126406627 original size:13 final size:13
Alignment explanation
Indices: 126406609--126406635 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
126406599 GATGTAATCG
126406609 CACACGGGCGTGT
1 CACACGGGCGTGT
126406622 CACACGGGCGTGT
1 CACACGGGCGTGT
126406635 C
1 C
126406636 CCTGTCAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:126407961 original size:29 final size:29
Alignment explanation
Indices: 126407919--126407974 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
126407909 GGCAAAATAT
126407919 TTATAAAATTAAAAATA-TGTTATAAAAGC
1 TTATAAAATTAAAAATATTGTT-TAAAAGC
* *
126407948 TTATCAAATTAAAATTATTGTTTAAAA
1 TTATAAAATTAAAAATATTGTTTAAAA
126407975 ATATGATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.39
Consensus pattern (29 bp):
TTATAAAATTAAAAATATTGTTTAAAAGC
Found at i:126408610 original size:28 final size:29
Alignment explanation
Indices: 126408575--126408633 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
126408565 CCAAATCTCC
126408575 AAATTTTTATATTTTCCAAGTTAAAAGCA
1 AAATTTTTATATTTTCCAAGTTAAAAGCA
*
126408604 AAATTTTTATATTTTCCAAGTTAAATGCA
1 AAATTTTTATATTTTCCAAGTTAAAAGCA
126408633 A
1 A
126408634 GTACCAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.42
Consensus pattern (29 bp):
AAATTTTTATATTTTCCAAGTTAAAAGCA
Found at i:126409319 original size:22 final size:22
Alignment explanation
Indices: 126409291--126409339 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
126409281 GGAAAATCAA
*
126409291 AGGGATTTCGGGATCTTGATTT
1 AGGGATTTCGAGATCTTGATTT
* *
126409313 AGGGATTTTGAGATTTTGATTT
1 AGGGATTTCGAGATCTTGATTT
*
126409335 TGGGA
1 AGGGA
126409340 AAAATTAATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.20, C:0.04, G:0.33, T:0.43
Consensus pattern (22 bp):
AGGGATTTCGAGATCTTGATTT
Found at i:126411410 original size:68 final size:66
Alignment explanation
Indices: 126411335--126411542 Score: 196
Period size: 68 Copynumber: 3.1 Consensus size: 66
126411325 ATTTCAAAAA
* *
126411335 TAATATTATTTTAATAGATTTAATATTAAATTTAATTTAATACTTATCTTATTAATATTTTATTA
1 TAATATTAATTTAATAGATTTAATATTAAATTTAATTTAATATTTATCTTATTAATA--TTATTA
126411400 ATT
64 ATT
** * * * * * *
126411403 TAATATTAAAGTGAT-TATCTTAATATTAAATTTAATTTATTGTTTATCTT-GTAGATA--AAT-
1 TAATATTAATTTAATAGAT-TTAATATTAAATTTAATTTAATATTTATCTTATTA-ATATTATTA
126411463 ATT
64 ATT
*
126411466 T--TATTAATTTAATAAGATTTAATATTAAATTTAATTTAATATTTATCTTGATTAGTATTAAAT
1 TAATATTAATTTAAT-AGATTTAATATTAAATTTAATTTAATATTTATCTT-ATTAATATT--AT
126411529 TAATT
62 TAATT
126411534 TAATATTAA
1 TAATATTAA
126411543 GGTGATTAAG
Statistics
Matches: 108, Mismatches: 19, Indels: 24
0.72 0.13 0.16
Matches are distributed among these distances:
61 9 0.08
62 29 0.27
63 8 0.07
64 4 0.04
67 6 0.06
68 46 0.43
70 6 0.06
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53
Consensus pattern (66 bp):
TAATATTAATTTAATAGATTTAATATTAAATTTAATTTAATATTTATCTTATTAATATTATTAAT
T
Found at i:126418136 original size:18 final size:20
Alignment explanation
Indices: 126418113--126418157 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
126418103 GACATTGAAA
126418113 AATATTGAATAC-GAAA-TG
1 AATATTGAATACTGAAATTG
126418131 AATATTG-ATACTGAAATTG
1 AATATTGAATACTGAAATTG
*
126418150 AAAATTGA
1 AATATTGA
126418158 GAAATTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 4 0.17
18 11 0.48
19 8 0.35
ACGTcount: A:0.49, C:0.04, G:0.16, T:0.31
Consensus pattern (20 bp):
AATATTGAATACTGAAATTG
Found at i:126419584 original size:11 final size:11
Alignment explanation
Indices: 126419568--126419596 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
126419558 AAATGAAGGT
126419568 AAGCTTACTTA
1 AAGCTTACTTA
126419579 AAGCTTACTTA
1 AAGCTTACTTA
126419590 AAGCTTA
1 AAGCTTA
126419597 GTAAGTTCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.34
Consensus pattern (11 bp):
AAGCTTACTTA
Found at i:126422164 original size:19 final size:19
Alignment explanation
Indices: 126422124--126422165 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
126422114 TTGAAAACAT
* *
126422124 AAAAACAAATATTAAAACA
1 AAAAACAAATATAAAAAAA
126422143 AAAAACAAATA-AAAAATAA
1 AAAAACAAATATAAAAA-AA
126422162 AAAA
1 AAAA
126422166 TGAGACTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.81, C:0.07, G:0.00, T:0.12
Consensus pattern (19 bp):
AAAAACAAATATAAAAAAA
Found at i:126426853 original size:31 final size:31
Alignment explanation
Indices: 126426815--126426874 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
126426805 CTTTAAAAAT
*
126426815 ATATATAAATTGAAAATAATAACAAAAAAGA
1 ATATATAAATTGAAAATAAAAACAAAAAAGA
*
126426846 ATATATAAATTGAAAATAAAAATAAAAAA
1 ATATATAAATTGAAAATAAAAACAAAAAA
126426875 TTTAGTTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (31 bp):
ATATATAAATTGAAAATAAAAACAAAAAAGA
Found at i:126426972 original size:10 final size:10
Alignment explanation
Indices: 126426957--126426982 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
126426947 AATTGTAAAA
126426957 TTTAAAATAT
1 TTTAAAATAT
126426967 TTTAAAATAT
1 TTTAAAATAT
126426977 TTTAAA
1 TTTAAA
126426983 CATTAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
TTTAAAATAT
Found at i:126442169 original size:21 final size:21
Alignment explanation
Indices: 126442145--126442191 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
126442135 ATATAGTAAC
*
126442145 AACAATAATAATAATAATAAT
1 AACAATAATAATAATAAAAAT
* *
126442166 AACAATACTAATTATAAAAAT
1 AACAATAATAATAATAAAAAT
126442187 AACAA
1 AACAA
126442192 GGACATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.26
Consensus pattern (21 bp):
AACAATAATAATAATAAAAAT
Found at i:126442676 original size:22 final size:22
Alignment explanation
Indices: 126442651--126442703 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
126442641 GAAAAAAAAA
126442651 AGAAGAGAGAAAAGGAGAGGGG
1 AGAAGAGAGAAAAGGAGAGGGG
***
126442673 AGAA-AGGAGAGGGGGAGAGGGG
1 AGAAGA-GAGAAAAGGAGAGGGG
126442695 AGAAGAGAG
1 AGAAGAGAG
126442704 GGCTCCGGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 1 0.04
22 24 0.92
23 1 0.04
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (22 bp):
AGAAGAGAGAAAAGGAGAGGGG
Found at i:126442704 original size:20 final size:22
Alignment explanation
Indices: 126442664--126442705 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
126442654 AGAGAGAAAA
126442664 GGAGAGGGGAGAAAGGAGAGGG
1 GGAGAGGGGAGAAAGGAGAGGG
126442686 GGAGAGGGGAG-AA-GAGAGGG
1 GGAGAGGGGAGAAAGGAGAGGG
126442706 CTCCGGCCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 7 0.35
21 2 0.10
22 11 0.55
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (22 bp):
GGAGAGGGGAGAAAGGAGAGGG
Found at i:126443916 original size:42 final size:41
Alignment explanation
Indices: 126443855--126444006 Score: 113
Period size: 42 Copynumber: 3.8 Consensus size: 41
126443845 GAATAACAAA
* *
126443855 TAAATAATAAATAGATAAAACAAAT-ATAAATAATATCAAATT
1 TAAATATTAAA-AGGTAAAA-AAATAATAAATAATATCAAATT
* *
126443897 TAAATATCTAAAAGGTAAAAGAATAACAAATAA-AT-AAA--
1 TAAATAT-TAAAAGGTAAAAAAATAATAAATAATATCAAATT
* * * *
126443935 TAAATA--AATAGATAAAACAAAT-ATTAATAATACCAAATT
1 TAAATATTAAAAGGTAAAA-AAATAATAAATAATATCAAATT
* *
126443974 TAAATATTTAAAAAGTAAAAGAATAATAAATAA
1 TAAATA-TTAAAAGGTAAAAAAATAATAAATAA
126444007 ATGGATAATA
Statistics
Matches: 84, Mismatches: 15, Indels: 22
0.69 0.12 0.18
Matches are distributed among these distances:
35 15 0.18
36 4 0.05
37 3 0.04
38 6 0.07
39 6 0.07
40 3 0.04
41 8 0.10
42 35 0.42
43 4 0.05
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26
Consensus pattern (41 bp):
TAAATATTAAAAGGTAAAAAAATAATAAATAATATCAAATT
Found at i:126444093 original size:143 final size:139
Alignment explanation
Indices: 126443809--126444243 Score: 464
Period size: 143 Copynumber: 3.0 Consensus size: 139
126443799 GTATACTTTA
* * *
126443809 ATAATAATATCAATTTTAAATATTTAAAAAGTGTAAGAATAACAAATAAATAATAAATAGATAA-
1 ATAATAATATCAAATTTAAATATTTAAAAA--GTAA-AAGAA-TAAT--A-AATAAATAGATAAT
* * * *
126443873 AACAAATATAAATAATATCAAATTTAAATATCTAAAAGGTAAAAGAATAACAAATAAATAAATAA
59 AA-AGATATAAATAATATCAAATTTAAATATTTAAAAAGT-AAAGAATAA-TAATAAATAAATAA
126443938 ATAAATAGATAAAACAAAT
121 ATAAATAGATAAAACAAAT
* * *
126443957 ATTAATAATACCAAATTTAAATATTTAAAAAGTAAAAGAATAATAAATAAATGGATAATATAGAT
1 A-TAATAATATCAAATTTAAATATTTAAAAAGTAAAAGAATAATAAATAAATAGATAATAAAGAT
126444022 ATAAATAATATCAAATTTTAAATATTTAAAAAGTGAAAGAATAATGAATAAATAAATAAATAAAT
65 ATAAATAATATCAAA-TTTAAATATTTAAAAAGT-AAAGAATAAT-AATAAATAAATAAATAAAT
126444087 AGATAAAACAAAT
127 AGATAAAACAAAT
* * *
126444100 ATAGATAATATCAAATTTTAAATATTTAAAAAGTAAGAGAATAAGGAATAAATAAATAAATAGTT
1 ATA-ATAATATCAAA-TTTAAATATTTAAAAAGTAAAAGAAT----AATAAATAAATAGATA-AT
* * * * *
126444165 AAAACGAATATAGATAATGTCAAATTTAAATATTT-AATAGT-AA-AAGAATAACAAATAAATAA
59 -AAA-G-ATATAAATAATATCAAATTTAAATATTTAAAAAGTAAAGAATAATAATAAATAAATAA
126444227 ATAAATAGATAAAACAA
121 ATAAATAGATAAAACAA
126444244 CTCATAAAAG
Statistics
Matches: 251, Mismatches: 22, Indels: 30
0.83 0.07 0.10
Matches are distributed among these distances:
142 32 0.13
143 70 0.28
144 25 0.10
145 3 0.01
146 33 0.13
147 9 0.04
148 17 0.07
149 28 0.11
150 7 0.03
151 12 0.05
152 15 0.06
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (139 bp):
ATAATAATATCAAATTTAAATATTTAAAAAGTAAAAGAATAATAAATAAATAGATAATAAAGATA
TAAATAATATCAAATTTAAATATTTAAAAAGTAAAGAATAATAATAAATAAATAAATAAATAGAT
AAAACAAAT
Found at i:126444108 original size:78 final size:76
Alignment explanation
Indices: 126443998--126444243 Score: 301
Period size: 78 Copynumber: 3.3 Consensus size: 76
126443988 GTAAAAGAAT
* * * * *
126443998 AATAAATAAATGGATAATATAGATATAAATAATATCAAATTTTAAATATTTAAAAAGTGAAAGAA
1 AATAAATAAATAGATAAAACAAATATAGATAATATCAAATTTTAAATATTTAAAAAGT-AAAGAA
126444063 TAATGAATAAATA
65 TAATGAA-AAATA
126444076 AATAAATAAATAGATAAAACAAATATAGATAATATCAAATTTTAAATATTTAAAAAGTAAGAGAA
1 AATAAATAAATAGATAAAACAAATATAGATAATATCAAATTTTAAATATTTAAAAAGTAA-AGAA
*
126444141 TAA-G--GAATA
65 TAATGAAAAATA
* * * *
126444150 AATAAATAAATAGTTAAAACGAATATAGATAATGTCAAA-TTTAAATATTT-AATAGTAAAAGAA
1 AATAAATAAATAGATAAAACAAATATAGATAATATCAAATTTTAAATATTTAAAAAGT-AAAGAA
*
126444213 T-A--ACAAATA
65 TAATGAAAAATA
126444222 AATAAATAAATAGATAAAACAA
1 AATAAATAAATAGATAAAACAA
126444244 CTCATAAAAG
Statistics
Matches: 151, Mismatches: 13, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
71 1 0.01
72 34 0.23
73 13 0.09
74 40 0.26
77 3 0.02
78 60 0.40
ACGTcount: A:0.61, C:0.03, G:0.09, T:0.28
Consensus pattern (76 bp):
AATAAATAAATAGATAAAACAAATATAGATAATATCAAATTTTAAATATTTAAAAAGTAAAGAAT
AATGAAAAATA
Found at i:126444843 original size:2 final size:2
Alignment explanation
Indices: 126444836--126444869 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
126444826 TTTTGATCCC
126444836 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
126444870 AACAATTCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:126447170 original size:3 final size:3
Alignment explanation
Indices: 126447162--126447227 Score: 89
Period size: 3 Copynumber: 22.3 Consensus size: 3
126447152 ATTTGAATCT
* *
126447162 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TAT TAA TAA TAA TAT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
126447209 TAA TAT TAA TAT TAA TAA T
1 TAA TAA TAA TAA TAA TAA T
126447228 TTGTTTTCAA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
2 2 0.04
3 52 0.96
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:126447179 original size:12 final size:12
Alignment explanation
Indices: 126447161--126447227 Score: 100
Period size: 12 Copynumber: 5.7 Consensus size: 12
126447151 CATTTGAATC
126447161 TTAATAATAATA
1 TTAATAATAATA
*
126447173 ATAATAATAATA
1 TTAATAATAATA
*
126447185 ATAAT-ATAATA
1 TTAATAATAATA
126447196 TTAATAATAATA
1 TTAATAATAATA
*
126447208 TTAATATTAATA
1 TTAATAATAATA
126447220 TTAATAAT
1 TTAATAAT
126447228 TTGTTTTCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
11 10 0.20
12 40 0.80
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TTAATAATAATA
Found at i:126447376 original size:32 final size:32
Alignment explanation
Indices: 126447340--126447405 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
126447330 AAATAACGGT
126447340 AATAAATTTGATATTTAAAAACTGTTGAAAAA
1 AATAAATTTGATATTTAAAAACTGTTGAAAAA
126447372 AATAAATTTGATATTTAAAAACTGTTGAAAAA
1 AATAAATTTGATATTTAAAAACTGTTGAAAAA
126447404 AA
1 AA
126447406 AAGTATATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.55, C:0.03, G:0.09, T:0.33
Consensus pattern (32 bp):
AATAAATTTGATATTTAAAAACTGTTGAAAAA
Found at i:126449041 original size:26 final size:28
Alignment explanation
Indices: 126449011--126449072 Score: 74
Period size: 26 Copynumber: 2.2 Consensus size: 28
126449001 TGTCAATGTT
*
126449011 ATAAAAATTATAGAAAAAAT-TTAAAA-
1 ATAAAAAATATAGAAAAAATATTAAAAG
* *
126449037 ATAAAAAATATATAAAAAGTATTAAAAG
1 ATAAAAAATATAGAAAAAATATTAAAAG
126449065 TATAAAAA
1 -ATAAAAA
126449073 CCTAATGAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 17 0.57
27 6 0.20
29 7 0.23
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (28 bp):
ATAAAAAATATAGAAAAAATATTAAAAG
Found at i:126449071 original size:28 final size:28
Alignment explanation
Indices: 126449010--126449072 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
126449000 TTGTCAATGT
126449010 TATAAAAATTATAGAAAAAATTTAAAAA
1 TATAAAAATTATAGAAAAAATTTAAAAA
* * *
126449038 TA-AAAAA-TATATAAAAAGTATTAAAAG
1 TATAAAAATTATAGAAAAAAT-TTAAAAA
126449065 TATAAAAA
1 TATAAAAA
126449073 CCTAATGAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 10 0.33
27 13 0.43
28 7 0.23
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (28 bp):
TATAAAAATTATAGAAAAAATTTAAAAA
Found at i:126449250 original size:8 final size:8
Alignment explanation
Indices: 126449237--126449267 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
126449227 TTGTCTCATC
126449237 GTTTCTTT
1 GTTTCTTT
126449245 GTTTCTTT
1 GTTTCTTT
126449253 GTTTCTTT
1 GTTTCTTT
126449261 GTTTCTT
1 GTTTCTT
126449268 CATCACTTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.00, C:0.13, G:0.13, T:0.74
Consensus pattern (8 bp):
GTTTCTTT
Found at i:126449387 original size:10 final size:10
Alignment explanation
Indices: 126449372--126449457 Score: 56
Period size: 10 Copynumber: 8.9 Consensus size: 10
126449362 AATAAATTTC
126449372 TATATTTTTT
1 TATATTTTTT
126449382 TATA---TTT
1 TATATTTTTT
*
126449389 TAAATTTTTT
1 TATATTTTTT
* *
126449399 TCTAATTTTT
1 TATATTTTTT
**
126449409 TA-ATAACTTT
1 TATAT-TTTTT
*
126449419 TATATTTTTCC
1 TATATTTTT-T
126449430 TATATTTTTT
1 TATATTTTTT
*
126449440 TATATTTTTA
1 TATATTTTTT
126449450 TA-ATTTTT
1 TATATTTTT
126449458 ATTGTCTTTT
Statistics
Matches: 57, Mismatches: 13, Indels: 13
0.69 0.16 0.16
Matches are distributed among these distances:
7 6 0.11
9 7 0.12
10 33 0.58
11 11 0.19
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.70
Consensus pattern (10 bp):
TATATTTTTT
Found at i:126449389 original size:29 final size:29
Alignment explanation
Indices: 126449357--126449457 Score: 100
Period size: 29 Copynumber: 3.5 Consensus size: 29
126449347 ACTTTTGGTG
**
126449357 TTTTTAATAAATTTCTATATTTTTTTATA
1 TTTTTAATATTTTTCTATATTTTTTTATA
* * *
126449386 TTTTAAATTTTTTTCTA-ATTTTTTAATAA
1 TTTTTAATATTTTTCTATATTTTTTTAT-A
*
126449415 CTTTT-ATATTTTTCCTATATTTTTTTATA
1 TTTTTAATATTTTT-CTATATTTTTTTATA
126449444 TTTTT-ATAATTTTT
1 TTTTTAAT-ATTTTT
126449458 ATTGTCTTTT
Statistics
Matches: 58, Mismatches: 10, Indels: 7
0.77 0.13 0.09
Matches are distributed among these distances:
28 16 0.28
29 27 0.47
30 15 0.26
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (29 bp):
TTTTTAATATTTTTCTATATTTTTTTATA
Found at i:126449407 original size:9 final size:9
Alignment explanation
Indices: 126449372--126449459 Score: 54
Period size: 9 Copynumber: 9.3 Consensus size: 9
126449362 AATAAATTTC
126449372 TATATTTTT
1 TATATTTTT
*
126449381 T-TATATTT
1 TATATTTTT
*
126449389 TAAATTTTTT
1 TATA-TTTTT
*
126449399 TCTAATTTTT
1 TAT-ATTTTT
**
126449409 TAATAACTTT
1 T-ATATTTTT
126449419 TATATTTTT
1 TATATTTTT
126449428 CCTATATTTTT
1 --TATATTTTT
126449439 T-TATATTTT
1 TATAT-TTTT
*
126449448 TATAATTTT
1 TATATTTTT
126449457 TAT
1 TAT
126449460 TGTCTTTTAT
Statistics
Matches: 60, Mismatches: 11, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
8 10 0.17
9 21 0.35
10 18 0.30
11 11 0.18
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (9 bp):
TATATTTTT
Found at i:126449426 original size:30 final size:28
Alignment explanation
Indices: 126449368--126449457 Score: 101
Period size: 29 Copynumber: 3.1 Consensus size: 28
126449358 TTTTAATAAA
*
126449368 TTTCTATATTTTTTTATATTTTAAATTTT
1 TTTCTATATTTTTTTATATTTTATA-TTT
*
126449397 TTTCTA-ATTTTTTAATAACTTTTATATTT
1 TTTCTATATTTTTTTAT-A-TTTTATATTT
* *
126449426 TTCCTATATTTTTTTATATTTTTATAATT
1 TTTCTATATTTTTTTATA-TTTTATATTT
126449455 TTT
1 TTT
126449458 ATTGTCTTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
28 9 0.18
29 27 0.53
30 15 0.29
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.70
Consensus pattern (28 bp):
TTTCTATATTTTTTTATATTTTATATTT
Found at i:126449455 original size:19 final size:19
Alignment explanation
Indices: 126449375--126449457 Score: 73
Period size: 19 Copynumber: 4.3 Consensus size: 19
126449365 AAATTTCTAT
126449375 ATTTTTTTATA-TTTTA-A
1 ATTTTTTTATATTTTTATA
*
126449392 ATTTTTTTCTAATTTTT-TA
1 ATTTTTTTAT-ATTTTTATA
** *
126449411 ATAACTTTTATATTTTTCCTA
1 AT-TTTTTTATATTTTT-ATA
126449432 TATTTTTTTATATTTTTATA
1 -ATTTTTTTATATTTTTATA
126449452 ATTTTT
1 ATTTTT
126449458 ATTGTCTTTT
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
17 9 0.17
18 1 0.02
19 19 0.37
20 7 0.13
21 14 0.27
22 2 0.04
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (19 bp):
ATTTTTTTATATTTTTATA
Found at i:126449576 original size:16 final size:17
Alignment explanation
Indices: 126449546--126449581 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
126449536 ACTTTAAATA
126449546 TTATATTTCTATAATTT
1 TTATATTTCTATAATTT
126449563 TTATATTT-TATAATTT
1 TTATATTTCTATAATTT
126449579 TTA
1 TTA
126449582 AAAAAAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (17 bp):
TTATATTTCTATAATTT
Found at i:126449597 original size:19 final size:19
Alignment explanation
Indices: 126449573--126449609 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
126449563 TTATATTTTA
126449573 TAATTTTTAAAAAAAATTC
1 TAATTTTTAAAAAAAATTC
* *
126449592 TAATTTTTTAAATAAATT
1 TAATTTTTAAAAAAAATT
126449610 TAAAATACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (19 bp):
TAATTTTTAAAAAAAATTC
Found at i:126452025 original size:17 final size:18
Alignment explanation
Indices: 126451997--126452056 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
126451987 GGTGTCCAAA
126451997 TTTAGATGAAATATTAATT
1 TTTAG-TGAAATATTAATT
* *
126452016 CTTAGT-AAATTTATATATT
1 TTTAGTGAAATAT-TA-ATT
126452035 TTTA-TGAAATATTAATT
1 TTTAGTGAAATATTAATT
126452052 TTTAG
1 TTTAG
126452057 GTTATTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
17 12 0.36
18 6 0.18
19 15 0.45
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.52
Consensus pattern (18 bp):
TTTAGTGAAATATTAATT
Found at i:126452089 original size:7 final size:7
Alignment explanation
Indices: 126452077--126452104 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
126452067 TTTTAAATAT
126452077 ATATAAA
1 ATATAAA
126452084 ATATAAA
1 ATATAAA
126452091 ATATAAA
1 ATATAAA
126452098 ATATAAA
1 ATATAAA
126452105 CTTATATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
ATATAAA
Found at i:126452135 original size:16 final size:16
Alignment explanation
Indices: 126452071--126452136 Score: 53
Period size: 16 Copynumber: 4.1 Consensus size: 16
126452061 TTATTATTTT
126452071 AAATATATATAAAATATA
1 AAATATATA-AAAATA-A
*
126452089 AAATATA-AAATATAA
1 AAATATATAAAAATAA
** ***
126452104 ACTTATATATTTATAA
1 AAATATATAAAAATAA
126452120 AAATATATAAAAATAA
1 AAATATATAAAAATAA
126452136 A
1 A
126452137 TACAATTACA
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
15 6 0.16
16 23 0.62
17 1 0.03
18 7 0.19
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATATATAAAAATAA
Found at i:126452137 original size:14 final size:15
Alignment explanation
Indices: 126452075--126452138 Score: 60
Period size: 14 Copynumber: 4.2 Consensus size: 15
126452065 TATTTTAAAT
126452075 ATATATAAAATATAA
1 ATATATAAAATATAA
126452090 A-ATATAAAATATAA
1 ATATATAAAATATAA
** *
126452104 ACTTATATATTTATAAAA
1 A--TATATA-AAATATAA
126452122 ATATATAAAA-ATAA
1 ATATATAAAATATAA
126452136 ATA
1 ATA
126452139 CAATTACAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
14 20 0.51
15 2 0.05
16 6 0.15
17 5 0.13
18 6 0.15
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (15 bp):
ATATATAAAATATAA
Found at i:126452264 original size:35 final size:34
Alignment explanation
Indices: 126452188--126452264 Score: 84
Period size: 35 Copynumber: 2.2 Consensus size: 34
126452178 CTAAATTAAA
** *
126452188 AATACAACATATAAATTAATAAAAATTTAAAATTT
1 AATA-AACATATAAAAGAATAAAAATTTAAAAATT
126452223 AAATAAACATATAAAAGAACTAAAAATTTATAAAATT
1 -AATAAACATATAAAAGAA-TAAAAATTTA-AAAATT
126452260 -ATAAA
1 AATAAA
126452265 ATGTATAACT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
35 17 0.47
36 14 0.39
37 5 0.14
ACGTcount: A:0.64, C:0.05, G:0.01, T:0.30
Consensus pattern (34 bp):
AATAAACATATAAAAGAATAAAAATTTAAAAATT
Found at i:126456695 original size:6 final size:7
Alignment explanation
Indices: 126456669--126456694 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
126456659 GATGCCATTC
126456669 TTTTTTA
1 TTTTTTA
126456676 TTTTTTA
1 TTTTTTA
126456683 TTTTTTA
1 TTTTTTA
126456690 TTTTT
1 TTTTT
126456695 AAGTCACATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:126457821 original size:10 final size:10
Alignment explanation
Indices: 126457803--126457836 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
126457793 AACTATTAAT
126457803 ATATTATATA
1 ATATTATATA
*
126457813 ATATGATATA
1 ATATTATATA
126457823 ATATTATATA
1 ATATTATATA
126457833 ATAT
1 ATAT
126457837 AGTAGGAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (10 bp):
ATATTATATA
Found at i:126457960 original size:16 final size:17
Alignment explanation
Indices: 126457941--126457973 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
126457931 TATATACTGT
126457941 ACTACTATTAT-ATATA
1 ACTACTATTATAATATA
*
126457957 ACTATTATTATAATATA
1 ACTACTATTATAATATA
126457974 GATTATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (17 bp):
ACTACTATTATAATATA
Found at i:126458425 original size:250 final size:253
Alignment explanation
Indices: 126457703--126458951 Score: 1306
Period size: 247 Copynumber: 5.0 Consensus size: 253
126457693 ATATTAATAC
* *
126457703 ATATATAACTATTATTATAATATATGTTATAATAAAAAATATATAGTATTACATGATATTATAAT
1 ATATATAACTATTA-T-T-ATA-ATGTTATAAT--AAAAGATATAGTATTATATGATATTATAAT
*
126457768 GTTTAATCATTGATGCATATATATAAACTATT-A-ATA-TAT-TATATA--ATATGATAT-A-AT
60 GTTTAATCATTGATGTATATATATAAACTATTAATATATTATATATATACGATATGATATGATAT
** * * * * * ** *
126457825 ---ATTATATAATATAGTAGGAGGATTAATTTTTAAATATACGAAAATTATAGATACTTGGAGCA
125 AACATTATATAATATAGTAGGAGGGCTAACTTTCAAATGTACAAAAAGTATAGGGACTTAGAGCA
** * *
126457887 TATTTCAACT-ATCATAATAGCAAACAATAATATATAAT-AAGTAATATATACTGTACTACTATT
190 TATTTCAACTAAT-ATAATAATAAACAATAATATATAATAAATTAATATATAATGTACTACTATT
* * *
126457950 ATATATAACTATTATTATAATATAGATTATAAAAGATATAGTATTATATGATATTATAATGTTTA
1 ATATATAACTATTATTATAATGT-TATAATAAAAGATATAGTATTATATGATATTATAATGTTTA
* *
126458015 ATCATTTATGTATATATATAAAC--------TATTA-ATATAT--GATATGATATGATATAGCAT
65 ATCATTGATGTATATATATAAACTATTAATATATTATATATATACGATATGATATGATATAACAT
* * * *
126458069 TATATAATAT-GTAGGAGGGCTAATTTTCAAATGCACGAAAAGTATATGGACTTAGAGCATATTT
130 TATATAATATAGTAGGAGGGCTAACTTTCAAATGTACAAAAAGTATAGGGACTTAGAGCATATTT
* * ** *
126458133 CAACTAGTATAATAATAAACAACAATATATAAT-ACGTAATATATGATGTACTACTATT
195 CAACTAATATAATAATAAACAATAATATATAATAAATTAATATATAATGTACTACTATT
* * *
126458191 ATA-A-AGCTATTATTATAAT-TTATAATAAAAGATATAATATT-TCATAATATTATAATGTTTA
1 ATATATAACTATTATTATAATGTTATAATAAAAGATATAGTATTAT-ATGATATTATAATGTTTA
*
126458252 ATCATTGGTGTATATATATAAACTATTAATATATTATATACTATACGATATGATATGATATAACA
65 ATCATTGATGTATATATATAAACTATTAATATATTATATA-TATACGATATGATATGATATAACA
* * * * * * *
126458317 TAATATAATATAATAGGATGGCTACCTTTCATATGTACAAAAACTATAGGGACTTAGAGTATATT
129 TTATATAATATAGTAGGAGGGCTAACTTTCAAATGTACAAAAAGTATAGGGACTTAGAGCATATT
* ** *
126458382 TCAACTAATATAATAATAAAAAATAATA-ATTAATTTA-TAATATATAATGTACAACTATT
194 TCAACTAATATAATAATAAACAATAATATA-TAATAAATTAATATATAATGTACTACTATT
*
126458441 ATATATAATTATTA-TATAATAGATTATAATAAAAGATATAGTATTATATGATATTATAATGTTT
1 ATATATAACTATTATTATAAT-G-TTATAATAAAAGATATAGTATTATATGATATTATAATGTTT
* * * *
126458505 AATTATTGATG--CATATATAAACTATTATTATATTATAT-TATAC---ATGATATGATATAGCA
64 AATCATTGATGTATATATATAAACTATTAATATATTATATATATACGATATGATATGATATAACA
* * * * *
126458564 TTATATAATATAGTAGGAGGGTTAATTTTTAAATATACGAAAAA-TACAGGGACTTAGAGCATAT
129 TTATATAATATAGTAGGAGGGCTAACTTTCAAATGTAC-AAAAAGTATAGGGACTTAGAGCATAT
*
126458628 TTCAACTAATATAATAATAAACAATAATATATAATAAAATTAATATATAATGTACTACCATT
193 TTCAACTAATATAATAATAAACAATAATATATAAT-AAATTAATATATAATGTACTACTATT
**
126458690 ATATATAACTATTATTATATTATTGGTTATAATAAAATCTATAGTATTATATGATATTATAATGT
1 ATATATAACTATTATTATA--A-T-GTTATAATAAAAGATATAGTATTATATGATATTATAATGT
* * * * * *
126458755 TTAAACATTGATGCATATATGTGTATAAACTATTAAAATA-TAT-TATATACTATATGACATTAT
62 TTAATCATTGATG--TATA--TATATAAACTATTAATATATTATATATATACGATATGATATGAT
* * * ** *
126458818 ACAACATTATATAATAGAGTAGGAGGGTTAACTTTCAAATGTATGAAAAGTATAGAGACTTAGAG
123 ATAACATTATATAATATAGTAGGAGGGCTAACTTTCAAATGTACAAAAAGTATAGGGACTTAGAG
* *
126458883 CATATTTCAACCAATATAATAATAAACAATAATATATGTTAAT-AATTAATATATGATGTACTAC
188 CATATTTCAACTAATATAATAATAAACAATAATATA---TAATAAATTAATATATAATGTACTAC
126458947 TATT
250 TATT
126458951 A
1 A
126458952 GATTATAGAA
Statistics
Matches: 848, Mismatches: 100, Indels: 94
0.81 0.10 0.09
Matches are distributed among these distances:
236 3 0.00
237 72 0.08
238 2 0.00
239 16 0.02
240 1 0.00
241 96 0.11
242 67 0.08
243 3 0.00
244 7 0.01
245 6 0.01
246 4 0.00
247 111 0.13
248 7 0.01
249 62 0.07
250 104 0.12
251 7 0.01
252 80 0.09
253 2 0.00
254 46 0.05
255 1 0.00
256 2 0.00
257 8 0.01
258 16 0.02
259 4 0.00
260 93 0.11
261 24 0.03
263 4 0.00
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (253 bp):
ATATATAACTATTATTATAATGTTATAATAAAAGATATAGTATTATATGATATTATAATGTTTAA
TCATTGATGTATATATATAAACTATTAATATATTATATATATACGATATGATATGATATAACATT
ATATAATATAGTAGGAGGGCTAACTTTCAAATGTACAAAAAGTATAGGGACTTAGAGCATATTTC
AACTAATATAATAATAAACAATAATATATAATAAATTAATATATAATGTACTACTATT
Found at i:126458475 original size:491 final size:493
Alignment explanation
Indices: 126457703--126458951 Score: 1478
Period size: 491 Copynumber: 2.5 Consensus size: 493
126457693 ATATTAATAC
*
126457703 ATATATAACTATTATTATAATATATGTTATAATAAAAAATATATAGTATTACATGATATTATAAT
1 ATATATAACTATTA-T-T-ATATATGTTATAATAAAAAATATA-A-TATTTCATGATATTATAAT
*
126457768 GTTTAATCATTGATGCATATATATAAACTATT-AATATATTATATA-ATATGATATA-AT---AT
61 GTTTAATCATTGATGTATATATATAAACTATTAAATATATTATATACATATGATATATATAACAT
* * * * * *
126457827 TATATAATATAGTAGGAGGATTAATTTTTAAATATACGAAAATTATAGATACTTGGAGCATATTT
126 TATATAATATAGTAGGAGG-TTAACTTTCAAATGTACGAAAACTATAGAGACTTAGAGCATATTT
** *
126457892 CAACT-ATCATAATAGCAAACAATAAT-ATATAATAAGTAATATATACTGTACTACTATTATATA
190 CAACTAAT-ATAATAATAAACAATAATAAT-TAATAAGTAATATATAATGTACTACTATTATATA
* *
126457955 TAACTATTATTATAATATAGATTATAAAAGATATAGTATTATATGATATTATAATGTTTAATCAT
253 TAACTATTATTATAATAGAGATAATAAAAGATATAGTATTATATGATATTATAATGTTTAATCAT
* *
126458020 TTATGTATATATATAA-ACTATTA-A-TATATGAT-ATGATATGATATAGCATTATATAATAT-G
318 TGATGCATATATA-AACACTATTATATTATATGATAATGATATGATATAGCATTATATAATATAG
* * * * *
126458080 TAGGAGGGCTAATTTTCAAATGCACGAAAAGTATATGGACTTAGAGCATATTTCAACTAGTATAA
382 TAGGAGGGCTAATTTTCAAATACACGAAAAATACAGGGACTTAGAGCATATTTCAACTAATATAA
* * *
126458145 TAATAAACAACAATATATAAT-ACGTAATATATGATGTACTACTATT
447 TAATAAACAACAATATATAATAAAGTAATATATAATGTACTACCATT
* * *
126458191 ATA-A-AGCTATTATTATA-AT-TTATAATAAAAGATATAATATTTCATAATATTATAATGTTTA
1 ATATATAACTATTATTATATATGTTATAATAAAAAATATAATATTTCATGATATTATAATGTTTA
*
126458252 ATCATTGGTGTATATATATAAACTATTAATATATTATATACTATACGATATGATATGATATAACA
66 ATCATTGATGTATATATATAAACTATTAA-ATA-TAT-TA-TATAC-ATATGATAT-ATATAACA
* * * * * * * *
126458317 TAATATAATATAATAGGATGGCTACCTTTCATATGTACAAAAACTATAGGGACTTAGAGTATATT
125 TTATATAATATAGTAGGA-GGTTAACTTTCAAATGTACGAAAACTATAGAGACTTAGAGCATATT
* * *
126458382 TCAACTAATATAATAATAAAAAATAATAATTAATTTA-TAATATATAATGTACAACTATTATATA
189 TCAACTAATATAATAATAAACAATAATAATTAA-TAAGTAATATATAATGTACTACTATTATATA
* * *
126458446 TAATTATTA-TATAATAGATTATAATAAAAGATATAGTATTATATGATATTATAATGTTTAATTA
253 TAACTATTATTATAATAGA-GATAATAAAAGATATAGTATTATATGATATTATAATGTTTAATCA
* *
126458510 TTGATGCATATATAAACTATTATTATATTATATTATACATGATATGATATAGCATTATATAATAT
317 TTGATGCATATATAAAC-ACTATTATATTATATGATA-ATGATATGATATAGCATTATATAATAT
* * *
126458575 AGTAGGAGGGTTAATTTTTAAATATACGAAAAATACAGGGACTTAGAGCATATTTCAACTAATAT
380 AGTAGGAGGGCTAATTTTCAAATACACGAAAAATACAGGGACTTAGAGCATATTTCAACTAATAT
* *
126458640 AATAATAAACAATAATATATAATAAAATTAATATATAATGTACTACCATT
445 AATAATAAACAACAATATATAAT-AAAGTAATATATAATGTACTACCATT
** *
126458690 ATATATAACTATTATTATATTATTGGTTATAATAAAATCTATAGTATTAT-ATGATATTATAATG
1 ATATATAACTATTATTATA-TA-T-GTTATAATAAAAAATATAATATT-TCATGATATTATAATG
* * *
126458754 TTTAAACATTGATGCATATATGTGTATAAACTATTAAAATATATTATATACTATATGACATTATA
62 TTTAATCATTGATG--TATA--TATATAAACTATT-AAATATATTATATAC-ATATGATA-TATA
* * * *
126458819 CAACATTATATAATAGAGTAGGAGGGTTAACTTTCAAATGTATGAAAAGTATAGAGACTTAGAGC
120 TAACATTATATAATATAGTAGGA-GGTTAACTTTCAAATGTACGAAAACTATAGAGACTTAGAGC
* * *
126458884 ATATTTCAACCAATATAATAATAAACAATAATATATGTTAATAATTAATATATGATGTACTACTA
184 ATATTTCAACTAATATAATAATAAACAATAATA-A--TTAATAAGTAATATATAATGTACTACTA
126458949 TTA
246 TTA
126458952 GATTATAGAA
Statistics
Matches: 641, Mismatches: 76, Indels: 66
0.82 0.10 0.08
Matches are distributed among these distances:
479 47 0.07
480 2 0.00
481 19 0.03
482 5 0.01
483 5 0.01
484 5 0.01
485 1 0.00
486 16 0.02
487 2 0.00
488 5 0.01
490 10 0.02
491 160 0.25
492 14 0.02
493 1 0.00
494 7 0.01
496 27 0.04
497 78 0.12
499 24 0.04
500 1 0.00
501 12 0.02
503 1 0.00
504 1 0.00
506 44 0.07
507 99 0.15
508 8 0.01
509 5 0.01
510 40 0.06
511 2 0.00
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (493 bp):
ATATATAACTATTATTATATATGTTATAATAAAAAATATAATATTTCATGATATTATAATGTTTA
ATCATTGATGTATATATATAAACTATTAAATATATTATATACATATGATATATATAACATTATAT
AATATAGTAGGAGGTTAACTTTCAAATGTACGAAAACTATAGAGACTTAGAGCATATTTCAACTA
ATATAATAATAAACAATAATAATTAATAAGTAATATATAATGTACTACTATTATATATAACTATT
ATTATAATAGAGATAATAAAAGATATAGTATTATATGATATTATAATGTTTAATCATTGATGCAT
ATATAAACACTATTATATTATATGATAATGATATGATATAGCATTATATAATATAGTAGGAGGGC
TAATTTTCAAATACACGAAAAATACAGGGACTTAGAGCATATTTCAACTAATATAATAATAAACA
ACAATATATAATAAAGTAATATATAATGTACTACCATT
Found at i:126458673 original size:16 final size:17
Alignment explanation
Indices: 126458634--126458678 Score: 65
Period size: 16 Copynumber: 2.6 Consensus size: 17
126458624 ATATTTCAAC
126458634 TAATATAATAATAAACAA
1 TAATAT-ATAATAAACAA
*
126458652 TAATATATAATAAA-AT
1 TAATATATAATAAACAA
126458668 TAATATATAAT
1 TAATATATAAT
126458679 GTACTACCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 12 0.46
17 8 0.31
18 6 0.23
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (17 bp):
TAATATATAATAAACAA
Found at i:126460100 original size:45 final size:45
Alignment explanation
Indices: 126460032--126460136 Score: 140
Period size: 45 Copynumber: 2.3 Consensus size: 45
126460022 AACGGTAGCA
* *
126460032 GTAACAGTAACATTAACAATATTCAACACACAAAGTGTTGAATCT
1 GTAACAGTAACAGTAACAATATTCAACACACAAAGTGTCGAATCT
* * *
126460077 GTAACAGTAACGGTAACAGTATTCGACACACAAAGTGTCGAATC-
1 GTAACAGTAACAGTAACAATATTCAACACACAAAGTGTCGAATCT
*
126460121 GAAAACAGTAACAGTA
1 G-TAACAGTAACAGTA
126460137 GTCGGCATAT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
44 1 0.02
45 51 0.98
ACGTcount: A:0.44, C:0.18, G:0.16, T:0.22
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAATATTCAACACACAAAGTGTCGAATCT
Found at i:126460389 original size:40 final size:40
Alignment explanation
Indices: 126460339--126460422 Score: 123
Period size: 40 Copynumber: 2.1 Consensus size: 40
126460329 TCATTACTTT
* * *
126460339 AGTAATTTCACAGTTCAATGCAGTACATATAACAATATTC
1 AGTAACTTCACAATTCAATGCAGTACATAAAACAATATTC
* *
126460379 AGTAACTTCACAATTCAATTCAGTACTTAAAACAATATTC
1 AGTAACTTCACAATTCAATGCAGTACATAAAACAATATTC
126460419 AGTA
1 AGTA
126460423 TTCCATAATT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (40 bp):
AGTAACTTCACAATTCAATGCAGTACATAAAACAATATTC
Found at i:126461489 original size:26 final size:26
Alignment explanation
Indices: 126461453--126461559 Score: 157
Period size: 26 Copynumber: 4.2 Consensus size: 26
126461443 TGGTACAAAT
126461453 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
126461479 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
126461505 TG---ATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
126461528 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
126461554 TGATAA
1 TGATAA
126461560 GAATTTCATG
Statistics
Matches: 76, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
23 21 0.28
26 55 0.72
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:126461518 original size:49 final size:49
Alignment explanation
Indices: 126461461--126461557 Score: 167
Period size: 49 Copynumber: 2.0 Consensus size: 49
126461451 ATTGATAATA
126461461 GGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATG
1 GGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATG
* * *
126461510 GGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCATGAT
1 GGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGAT
126461558 AAGAATTTCA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (49 bp):
GGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATG
Found at i:126463071 original size:26 final size:26
Alignment explanation
Indices: 126463042--126463094 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
126463032 TTTACAGTTT
*
126463042 TACCCTTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
126463068 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
126463094 T
1 T
126463095 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:126467262 original size:31 final size:30
Alignment explanation
Indices: 126467227--126467289 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
126467217 CTTAATAAGT
* *
126467227 AAATGCCTCTAAAGTAGTAAAAAAAATTAAC
1 AAATGCCTCTAAAATAAT-AAAAAAATTAAC
* *
126467258 AAATGTCTTTAAAATAATAAAAAAATTAAC
1 AAATGCCTCTAAAATAATAAAAAAATTAAC
126467288 AA
1 AA
126467290 CAAAATAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 14 0.50
31 14 0.50
ACGTcount: A:0.59, C:0.10, G:0.06, T:0.25
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAAAAAAATTAAC
Found at i:126467912 original size:14 final size:14
Alignment explanation
Indices: 126467895--126467925 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
126467885 GTTATTTTTT
126467895 TTACTATTATGTTG
1 TTACTATTATGTTG
*
126467909 TTACTATTTTGTTG
1 TTACTATTATGTTG
126467923 TTA
1 TTA
126467926 TTATATAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.13, T:0.61
Consensus pattern (14 bp):
TTACTATTATGTTG
Found at i:126468924 original size:19 final size:19
Alignment explanation
Indices: 126468888--126468924 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
126468878 TAACTAGGCT
* *
126468888 TTAATTAAGTGAATTTAGC
1 TTAATTAAGAGAAATTAGC
126468907 TTAATTAAGAGAAATTAG
1 TTAATTAAGAGAAATTAG
126468925 GAAAAATGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.16, T:0.38
Consensus pattern (19 bp):
TTAATTAAGAGAAATTAGC
Found at i:126469430 original size:31 final size:32
Alignment explanation
Indices: 126469381--126469444 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 32
126469371 ATATTAAATA
*
126469381 AGATATTTATTAATTAAATA-ATTATATTATG
1 AGATATTTATTAATTAAATATATTAAATTATG
*
126469412 AGATTTTTATGTAA-TAAATATATTAAATTATG
1 AGATATTTAT-TAATTAAATATATTAAATTATG
126469444 A
1 A
126469445 CAAATGTATG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 15 0.52
32 14 0.48
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (32 bp):
AGATATTTATTAATTAAATATATTAAATTATG
Found at i:126469494 original size:142 final size:140
Alignment explanation
Indices: 126469238--126469534 Score: 332
Period size: 142 Copynumber: 2.1 Consensus size: 140
126469228 TTTAGAACAA
* * *
126469238 AAGATATTTATTAATTAAATAATTAAATAATGAGATTTTTGTTTGATAAATAAATTAAATAATGA
1 AAGATATTTATTAATTAAATAATTAAATAATGAGATTTTTATGTAATAAATAAATTAAATAATGA
* * * * * * * *
126469303 CAATTGTAATAAATTTATTGGTCCAAATGTGAAAATATAAGTGTGTACAATTGTAATATTAGTAT
66 CAAATGTAATAAA--TATTGGTCCAAATGTGAAAATACAAATGTATACAAATGTAAAATAAATA-
126469368 TTGA-TATTAAAT
128 TTGATTATTAAAT
* * * *
126469380 AAGATATTTATTAATTAAATAATTATATTATGAGATTTTTATGTAATAAATATATTAAATTATGA
1 AAGATATTTATTAATTAAATAATTAAATAATGAGATTTTTATGTAATAAATAAATTAAATAATGA
* * * *
126469445 CAAATGTATGGTAAA-ATTTGT-GACATGTGTAATAATACAAATGTATACAAATGTAAAATAAAT
66 CAAATGTA--ATAAATATTGGTCCAAATGTG-AA-AATACAAATGTATACAAATGTAAAATAAAT
126469508 ATTGATTATTAAAT
127 ATTGATTATTAAAT
126469522 -AGATATTTATTAA
1 AAGATATTTATTAA
126469535 CTTATTATAT
Statistics
Matches: 131, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
140 6 0.05
141 24 0.18
142 97 0.74
144 4 0.03
ACGTcount: A:0.45, C:0.03, G:0.11, T:0.41
Consensus pattern (140 bp):
AAGATATTTATTAATTAAATAATTAAATAATGAGATTTTTATGTAATAAATAAATTAAATAATGA
CAAATGTAATAAATATTGGTCCAAATGTGAAAATACAAATGTATACAAATGTAAAATAAATATTG
ATTATTAAAT
Found at i:126469554 original size:2 final size:2
Alignment explanation
Indices: 126469547--126469574 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
126469537 TATTATATTT
126469547 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
126469575 AAACGAAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:126470388 original size:15 final size:15
Alignment explanation
Indices: 126470363--126470412 Score: 68
Period size: 15 Copynumber: 3.4 Consensus size: 15
126470353 TTTATTAAAT
126470363 TTATATTGATTGAAA
1 TTATATTGATTGAAA
*
126470378 TTAT-TTGGATTGAAT
1 TTATATT-GATTGAAA
126470393 TTATATTGATTG-AA
1 TTATATTGATTGAAA
126470407 TTATAT
1 TTATAT
126470413 AATATATATG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 9 0.29
15 20 0.65
16 2 0.06
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (15 bp):
TTATATTGATTGAAA
Found at i:126470671 original size:12 final size:12
Alignment explanation
Indices: 126470649--126470679 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
126470639 TATATGTGAT
126470649 TATTAGAATGGTA
1 TATT-GAATGGTA
126470662 TATTGAATGGTA
1 TATTGAATGGTA
126470674 TATTGA
1 TATTGA
126470680 TGCAAGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.78
13 4 0.22
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (12 bp):
TATTGAATGGTA
Found at i:126470888 original size:27 final size:28
Alignment explanation
Indices: 126470858--126470927 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 28
126470848 TATACCTTAT
126470858 TGGTGTGTTTGGGAGG-CTATATTATGC
1 TGGTGTGTTTGGGAGGACTATATTATGC
* *
126470885 TGGTGTGTTAT-GGAGGATTTATATTATTC
1 TGGTGTGTT-TGGGAGGA-CTATATTATGC
126470914 TGGGTGTGTTTGGG
1 T-GGTGTGTTTGGG
126470928 TTGGATATTC
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
27 14 0.39
28 1 0.03
29 11 0.31
30 10 0.28
ACGTcount: A:0.14, C:0.04, G:0.37, T:0.44
Consensus pattern (28 bp):
TGGTGTGTTTGGGAGGACTATATTATGC
Found at i:126477197 original size:88 final size:88
Alignment explanation
Indices: 126476975--126477656 Score: 845
Period size: 88 Copynumber: 7.8 Consensus size: 88
126476965 TTTGCTCTGT
126476975 TACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGATAAGGC
1 TACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGATAAGGC
*
126477040 TCACCGTCTTCGATCCACTCCAC
66 TCACCGTCTTCGATCTACTCCAC
* *
126477063 TACTGCTTA-GGAGATAAGATCTGTAATTTCCAGCTTGTTTCCCTACTGCTTAAGGGGATAAGGC
1 TACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGATAAGGC
*
126477127 TCACCGTTTTCGAT-TCACTCCAC
66 TCACCGTCTTCGATCT-ACTCCAC
* * * * *
126477150 TACTACTTAGGGAAATAAGATCTGTAATTTTCAGTCTGTTTCCCTACTGCTTA-GGGGTTAAGGC
1 TACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGATAAGGC
* * *
126477214 TCACCGTCCTCGATCTGCTTCAC
66 TCACCGTCTTCGATCTACTCCAC
* * * *
126477237 TACTACTTAGGGAGATAAGATCTGTAATTTTCAGCCTATTTCCCTACTGCTTAGGGGGTTAAGGC
1 TACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGATAAGGC
* *
126477302 TCACCGTCCTCGATCTACTTCAC
66 TCACCGTCTTCGATCTACTCCAC
* * * *
126477325 TACTACTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGTTTAGGGGGTTAAAGC
1 TACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGATAAGGC
* **
126477390 TCACCGTCTTTGATCCGCTCCAC
66 TCACCGTCTTCGATCTACTCCAC
* *
126477413 TA-TCGCTTAAGGAGATAAGATCTGTAATTTCCAGTCTGTTTCCCTACTGCTTAGGGGGATAAGG
1 TACT-GCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGATAAGG
* * *
126477477 CTCACAGTCTTCAACCTACTCCAC
65 CTCACCGTCTTCGATCTACTCCAC
* * * * * ** *
126477501 TACTGCTTAGGGAGATAGGGTGGTCTGTCATTTTCAGCCCGTTTCCCTACTATTTAAGGGGATAA
1 TACTGCTTAGGGAGATA---AGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGATAA
** * *
126477566 GGCTCATTGTCTTCGATCTGCTCCTC
63 GGCTCACCGTCTTCGATCTACTCCAC
* * * * *
126477592 TACTGCTTAGGGAGATAAGATCTATAATTTTCAACATG--TCCTCTACTACTTAGGGGGATAAGG
1 TACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCC-CTACTGCTTAGGGGGATAAGG
126477655 CT
65 CT
126477657 AGTGAATTCT
Statistics
Matches: 520, Mismatches: 64, Indels: 21
0.86 0.11 0.03
Matches are distributed among these distances:
86 3 0.01
87 180 0.35
88 263 0.51
89 1 0.00
91 73 0.14
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.33
Consensus pattern (88 bp):
TACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGATAAGGC
TCACCGTCTTCGATCTACTCCAC
Found at i:126477281 original size:175 final size:176
Alignment explanation
Indices: 126476975--126477656 Score: 854
Period size: 175 Copynumber: 3.9 Consensus size: 176
126476965 TTTGCTCTGT
*
126476975 TACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGATAAGGC
1 TACTACTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGATAAGGC
* * *
126477040 TCACCGTCTTCGATCCACTCCACTACTGCTTA-GGAGATAAGATCTGTAATTTCCAGCTTGTTTC
66 TCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTATTTC
* *
126477104 CCTACTGCTTAAGGGGATAAGGCTCACCGTTTTCGAT-TCACTCCAC
131 CCTACTGCTTAGGGGGATAAGGCTCACCGTCTTCGATCT-ACTCCAC
* * * *
126477150 TACTACTTAGGGAAATAAGATCTGTAATTTTCAGTCTGTTTCCCTACTGCTTA-GGGGTTAAGGC
1 TACTACTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGATAAGGC
* * * * *
126477214 TCACCGTCCTCGATCTGCTTCACTACTACTTAGGGAGATAAGATCTGTAATTTTCAGCCTATTTC
66 TCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTATTTC
* * *
126477279 CCTACTGCTTAGGGGGTTAAGGCTCACCGTCCTCGATCTACTTCAC
131 CCTACTGCTTAGGGGGATAAGGCTCACCGTCTTCGATCTACTCCAC
* * *
126477325 TACTACTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGTTTAGGGGGTTAAAGC
1 TACTACTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGATAAGGC
* * * *
126477390 TCACCGTCTTTGATCCGCTCCACTA-TCGCTTAAGGAGATAAGATCTGTAATTTCCAGTCTGTTT
66 TCACCGTCTTCGATCCGCTCCACTACT-GCTTAGGGAGATAAGATCTGTAATTTCCAGCCTATTT
* * *
126477454 CCCTACTGCTTAGGGGGATAAGGCTCACAGTCTTCAACCTACTCCAC
130 CCCTACTGCTTAGGGGGATAAGGCTCACCGTCTTCGATCTACTCCAC
* * * * * * ** *
126477501 TACTGCTTAGGGAGATAGGGTGGTCTGTCATTTTCAGCCCGTTTCCCTACTATTTAAGGGGATAA
1 TACTACTTAGGGAGATA---AGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGATAA
** * * * * *
126477566 GGCTCATTGTCTTCGATCTGCTCCTCTACTGCTTAGGGAGATAAGATCTATAATTTTCA-AC-AT
63 GGCTCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTAT
* *
126477629 GTCCTCTACTACTTAGGGGGATAAGGCT
128 TTCC-CTACTGCTTAGGGGGATAAGGCT
126477657 AGTGAATTCT
Statistics
Matches: 438, Mismatches: 60, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
174 37 0.08
175 167 0.38
176 121 0.28
177 4 0.01
178 23 0.05
179 85 0.19
180 1 0.00
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.33
Consensus pattern (176 bp):
TACTACTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGATAAGGC
TCACCGTCTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTATTTC
CCTACTGCTTAGGGGGATAAGGCTCACCGTCTTCGATCTACTCCAC
Found at i:126477803 original size:64 final size:64
Alignment explanation
Indices: 126477725--126477849 Score: 178
Period size: 64 Copynumber: 2.0 Consensus size: 64
126477715 TCATGTATCT
* * *
126477725 ATGCTTATGCCAAATAATTAGGACACTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTA
1 ATGCTTATGCCAAATAATTAGGACACTATGATCAAAACGAATCAAATGCCCCTAACTAGATGTA
** ** *
126477789 ATGCTTATTTCAAATAATTAGGATGCTATGATCAAAACGAATCCAATGCCCCTAACTAGAT
1 ATGCTTATGCCAAATAATTAGGACACTATGATCAAAACGAATCAAATGCCCCTAACTAGAT
126477850 ATGTTATGAA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.29
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGACACTATGATCAAAACGAATCAAATGCCCCTAACTAGATGTA
Found at i:126482301 original size:25 final size:25
Alignment explanation
Indices: 126482267--126482318 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
126482257 TAGAGACATA
126482267 AATTTAAATGAAAATAATATTGACT
1 AATTTAAATGAAAATAATATTGACT
126482292 AATTTAAATGAAAATAATATTGACT
1 AATTTAAATGAAAATAATATTGACT
126482317 AA
1 AA
126482319 CTTACTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.35
Consensus pattern (25 bp):
AATTTAAATGAAAATAATATTGACT
Found at i:126484059 original size:16 final size:17
Alignment explanation
Indices: 126484029--126484061 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
126484019 ATTAAAAGAT
126484029 GTCTTGAATTGAATTGA
1 GTCTTGAATTGAATTGA
*
126484046 GTCTT-AATTTAATTGA
1 GTCTTGAATTGAATTGA
126484062 AATAAATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.30, C:0.06, G:0.18, T:0.45
Consensus pattern (17 bp):
GTCTTGAATTGAATTGA
Found at i:126485069 original size:19 final size:19
Alignment explanation
Indices: 126485034--126485072 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
126485024 AAACTTTTAA
*
126485034 TATTTTATGTTATAAAAAT
1 TATTTTATATTATAAAAAT
126485053 TATTTTATATGTA-AAAAAT
1 TATTTTATAT-TATAAAAAT
126485072 T
1 T
126485073 TAATTCAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (19 bp):
TATTTTATATTATAAAAAT
Found at i:126487256 original size:15 final size:15
Alignment explanation
Indices: 126487236--126487268 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
126487226 GTCCTTTTGA
126487236 AAACCATA-AAAATAT
1 AAACCATATAAAA-AT
126487251 AAACCATATAAAAAT
1 AAACCATATAAAAAT
126487266 AAA
1 AAA
126487269 TTACATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.18
Consensus pattern (15 bp):
AAACCATATAAAAAT
Found at i:126487381 original size:2 final size:2
Alignment explanation
Indices: 126487374--126487405 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
126487364 TTATATCTTC
126487374 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126487406 CAAGTTTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:126492047 original size:19 final size:19
Alignment explanation
Indices: 126492012--126492048 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
126492002 TTTTAAAAAA
* *
126492012 AATATTTTTATATATTTTC
1 AATATTTTTACAAATTTTC
126492031 AATATTTTTACAAATTTT
1 AATATTTTTACAAATTTT
126492049 AAATCATTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (19 bp):
AATATTTTTACAAATTTTC
Found at i:126510285 original size:24 final size:24
Alignment explanation
Indices: 126510253--126510299 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
126510243 TGACATTGTG
126510253 CTAAGTGAAATAAGACCATGACAT
1 CTAAGTGAAATAAGACCATGACAT
*
126510277 CTAAGTGAAATAAGTCCATGACA
1 CTAAGTGAAATAAGACCATGACA
126510300 ATGTGCTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.45, C:0.17, G:0.17, T:0.21
Consensus pattern (24 bp):
CTAAGTGAAATAAGACCATGACAT
Found at i:126510317 original size:28 final size:28
Alignment explanation
Indices: 126510242--126510340 Score: 118
Period size: 28 Copynumber: 3.7 Consensus size: 28
126510232 TATCTATGAT
* *
126510242 ATGACATTGTGCTAAGTGAAATAAGACC
1 ATGACAATGTGCTAAGTGAAATAAGTCC
126510270 ATGAC-A--T-CTAAGTGAAATAAGTCC
1 ATGACAATGTGCTAAGTGAAATAAGTCC
*
126510294 ATGACAATGTGCTAAATGAAATAAGTCC
1 ATGACAATGTGCTAAGTGAAATAAGTCC
*
126510322 AT-AGCATTGTGCTAAGTGA
1 ATGA-CAATGTGCTAAGTGA
126510341 GAAATTTCCT
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
24 21 0.34
25 2 0.03
27 2 0.03
28 36 0.59
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.26
Consensus pattern (28 bp):
ATGACAATGTGCTAAGTGAAATAAGTCC
Found at i:126510457 original size:51 final size:51
Alignment explanation
Indices: 126510385--126510617 Score: 396
Period size: 51 Copynumber: 4.6 Consensus size: 51
126510375 CTTTGGACAC
126510385 ACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATATAATAGCTTTGG
1 ACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATATAATAGCTTTGG
*
126510436 ACACAAGTGTGGTTCTATGTGAAGGCCACTTTGTGAATATAATAGCTTTGG
1 ACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATATAATAGCTTTGG
*
126510487 ACACAAGTGTGGTACTATTTGAAGGCCACTTTGTGAATATAATAGCTTTGG
1 ACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATATAATAGCTTTGG
* * *
126510538 ACATAAGTGTGGTACTATGTGAAGGCCACTTTATGAATAAAATAGCTTTGG
1 ACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATATAATAGCTTTGG
*
126510589 -CTACAAGGGTGGTACTATGTGAAGGCCAC
1 AC-ACAAGTGTGGTACTATGTGAAGGCCAC
126510618 CGCGTATCCG
Statistics
Matches: 172, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
50 1 0.01
51 171 0.99
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (51 bp):
ACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATATAATAGCTTTGG
Found at i:126513773 original size:32 final size:32
Alignment explanation
Indices: 126513737--126513838 Score: 104
Period size: 32 Copynumber: 3.2 Consensus size: 32
126513727 TAAGAGTATG
126513737 AAATGAACTTGATATTCAAATGGTAAGTTATT
1 AAATGAACTTGATATTCAAATGGTAAGTTATT
* * * * *
126513769 AAATGAA--T-A-ATTGAGAAATTGAAAGAGTATG
1 AAATGAACTTGATATT--CAAATGGTAAG-TTATT
126513800 AAATGAACTTGATATTCAAATGGTAAGTTATT
1 AAATGAACTTGATATTCAAATGGTAAGTTATT
126513832 AAATGAA
1 AAATGAA
126513839 TCGTGTAAGA
Statistics
Matches: 53, Mismatches: 10, Indels: 14
0.69 0.13 0.18
Matches are distributed among these distances:
28 3 0.06
29 1 0.02
30 9 0.17
31 10 0.19
32 17 0.32
33 9 0.17
34 1 0.02
35 3 0.06
ACGTcount: A:0.46, C:0.04, G:0.18, T:0.32
Consensus pattern (32 bp):
AAATGAACTTGATATTCAAATGGTAAGTTATT
Found at i:126513813 original size:63 final size:63
Alignment explanation
Indices: 126513714--126513839 Score: 243
Period size: 63 Copynumber: 2.0 Consensus size: 63
126513704 ATTTATATGA
*
126513714 AATTGAGAAATTGTAAGAGTATGAAATGAACTTGATATTCAAATGGTAAGTTATTAAATGAAT
1 AATTGAGAAATTGAAAGAGTATGAAATGAACTTGATATTCAAATGGTAAGTTATTAAATGAAT
126513777 AATTGAGAAATTGAAAGAGTATGAAATGAACTTGATATTCAAATGGTAAGTTATTAAATGAAT
1 AATTGAGAAATTGAAAGAGTATGAAATGAACTTGATATTCAAATGGTAAGTTATTAAATGAAT
126513840 CGTGTAAGAA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.45, C:0.03, G:0.19, T:0.33
Consensus pattern (63 bp):
AATTGAGAAATTGAAAGAGTATGAAATGAACTTGATATTCAAATGGTAAGTTATTAAATGAAT
Found at i:126517650 original size:50 final size:50
Alignment explanation
Indices: 126517575--126517751 Score: 282
Period size: 50 Copynumber: 3.5 Consensus size: 50
126517565 CCATGGCAAC
126517575 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
126517625 AAGTGATAAGTAATAGCTTCGGCTACATTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
126517675 AAGTGATAAGTGATAACTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
126517725 CAAGTGAAAAGTGGTAGCTTCTGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
126517752 CTGATCAGTG
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
50 93 0.81
51 22 0.19
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:126517844 original size:31 final size:31
Alignment explanation
Indices: 126517727--126517836 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
126517717 ACAAATGACA
* *
126517727 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
126517758 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
126517789 AGTGAAAACTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
126517820 AGTGAATAGTGGTAGCT
1 AGTGAAAAGTGGTAGCT
126517837 TCAGCTACAA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:126518014 original size:49 final size:48
Alignment explanation
Indices: 126517944--126518049 Score: 158
Period size: 49 Copynumber: 2.2 Consensus size: 48
126517934 GCATCAGTGA
* *
126517944 GATATGTGATTCGTGTAAGACCATAGATAGGCTATGGCATCGATATGT
1 GATATGTGATTCGTGTAAGACCATAGATAGGCTATGACATCGATATAT
* *
126517992 GATATGTGATTACGTGTAAGACCATAGCTGGGCTATGACATCGATATAT
1 GATATGTGATT-CGTGTAAGACCATAGATAGGCTATGACATCGATATAT
126518041 GAATATGTG
1 G-ATATGTG
126518050 TAAGACCATA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
48 11 0.21
49 34 0.65
50 7 0.13
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.31
Consensus pattern (48 bp):
GATATGTGATTCGTGTAAGACCATAGATAGGCTATGACATCGATATAT
Found at i:126518051 original size:42 final size:42
Alignment explanation
Indices: 126518005--126518102 Score: 135
Period size: 42 Copynumber: 2.3 Consensus size: 42
126517995 ATGTGATTAC
* *
126518005 GTGTAAGACCATAGCTGGGCTATGACATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCCATGACATC-ATTATATGAAGAT
* *
126518047 GTGTAAGACCATAGCTGGTCCATGACATCATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCCATGACATCATTATATGAAGAT
*
126518089 ATGTAAGACCATAG
1 GTGTAAGACCATAG
126518103 TTGAACTATG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
41 1 0.02
42 49 0.98
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCCATGACATCATTATATGAAGAT
Found at i:126521558 original size:46 final size:46
Alignment explanation
Indices: 126521508--126521630 Score: 228
Period size: 46 Copynumber: 2.7 Consensus size: 46
126521498 CATATTTCAT
*
126521508 GGTCGATGCATGTCCCAGATATGTCTTACACAGGCTTACATCTTGA
1 GGTCGATGCATGTCCCAGACATGTCTTACACAGGCTTACATCTTGA
126521554 GGTCGATGCATGTCCCAGACATGTCTTACACAGGCTTACATCTTGA
1 GGTCGATGCATGTCCCAGACATGTCTTACACAGGCTTACATCTTGA
*
126521600 GGTCGATGCATGTCCTAGACATGTCTTACAC
1 GGTCGATGCATGTCCCAGACATGTCTTACAC
126521631 TAGCACTCGT
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (46 bp):
GGTCGATGCATGTCCCAGACATGTCTTACACAGGCTTACATCTTGA
Found at i:126529196 original size:21 final size:21
Alignment explanation
Indices: 126529172--126529211 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
126529162 TATTCTTACC
* *
126529172 GCTATAGTATCTAATCTCACT
1 GCTACAGTATCAAATCTCACT
126529193 GCTACAGTATCAAATCTCA
1 GCTACAGTATCAAATCTCA
126529212 TTGCCACCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.33
Consensus pattern (21 bp):
GCTACAGTATCAAATCTCACT
Found at i:126533171 original size:24 final size:25
Alignment explanation
Indices: 126533113--126533209 Score: 81
Period size: 26 Copynumber: 3.9 Consensus size: 25
126533103 ATATGAGATC
* *
126533113 TTAAAATAAATATTA-ATAAAATAG
1 TTAAAATAAATAGTATATAAAAGAG
* *
126533137 TATAAACTAAATAGCATATAAAAGA-
1 T-TAAAATAAATAGTATATAAAAGAG
* * *
126533162 TTAAAATAAACAGTATATAAAACAAC
1 TTAAAATAAATAGTATATAAAA-GAG
* *
126533188 ATAAAATAAATAATATATAAAA
1 TTAAAATAAATAGTATATAAAA
126533210 TAATTTGAAG
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
24 19 0.33
25 13 0.22
26 26 0.45
ACGTcount: A:0.64, C:0.05, G:0.04, T:0.27
Consensus pattern (25 bp):
TTAAAATAAATAGTATATAAAAGAG
Found at i:126534812 original size:18 final size:18
Alignment explanation
Indices: 126534789--126534826 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
126534779 AAATTTATTT
126534789 TTAATAAAATAATAAATA
1 TTAATAAAATAATAAATA
* *
126534807 TTAATATAATAATATATA
1 TTAATAAAATAATAAATA
126534825 TT
1 TT
126534827 TTTTACTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TTAATAAAATAATAAATA
Found at i:126534886 original size:2 final size:2
Alignment explanation
Indices: 126534879--126534912 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
126534869 ATTCATTCAA
126534879 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126534913 TTTGTGTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:126535610 original size:22 final size:22
Alignment explanation
Indices: 126535569--126535610 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
126535559 TATTAAAATG
*
126535569 TATATTTTTAATTGATATTTTA
1 TATATTTTTAATTGACATTTTA
126535591 TATATTTTATAATT-ACATTT
1 TATATTTT-TAATTGACATTT
126535611 CAATTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (22 bp):
TATATTTTTAATTGACATTTTA
Found at i:126536829 original size:11 final size:11
Alignment explanation
Indices: 126536815--126536854 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
126536805 GTTTTCTCCC
126536815 TATTTTGCTAT
1 TATTTTGCTAT
*
126536826 TATTTTACTAT
1 TATTTTGCTAT
**
126536837 TACGTTGCTAT
1 TATTTTGCTAT
126536848 TATTTTG
1 TATTTTG
126536855 TTGTTATTGT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.20, C:0.10, G:0.10, T:0.60
Consensus pattern (11 bp):
TATTTTGCTAT
Found at i:126537058 original size:18 final size:18
Alignment explanation
Indices: 126537037--126537076 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
126537027 GAAATATTTA
*
126537037 TTTTGATGT-TTTTAGTAT
1 TTTTGATGTATTATA-TAT
126537055 TTTTGATGTATTATATAT
1 TTTTGATGTATTATATAT
126537073 TTTT
1 TTTT
126537077 TAAAAGTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (18 bp):
TTTTGATGTATTATATAT
Found at i:126537101 original size:12 final size:12
Alignment explanation
Indices: 126537084--126537111 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
126537074 TTTTAAAAGT
126537084 ATATAAAAATTA
1 ATATAAAAATTA
126537096 ATATAAAAATTA
1 ATATAAAAATTA
126537108 ATAT
1 ATAT
126537112 GGGCGGGCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
ATATAAAAATTA
Found at i:126543244 original size:2 final size:2
Alignment explanation
Indices: 126543237--126543298 Score: 124
Period size: 2 Copynumber: 31.0 Consensus size: 2
126543227 AATTCTAATT
126543237 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
126543279 TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
126543299 AACTCAAAGG
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.