Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 407 of 438
Found at i:126543937 original size:2 final size:2
Alignment explanation
Indices: 126543930--126543962 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
126543920 ACAACTTAAA
126543930 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
126543963 AGAAATTCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:126545261 original size:35 final size:35
Alignment explanation
Indices: 126545193--126545361 Score: 178
Period size: 35 Copynumber: 4.6 Consensus size: 35
126545183 TCCTCATTGA
*** *
126545193 AATACCATACCTACATTTTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACA--TTTCACAACTCAGTAT-GGAT
* **
126545230 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
126545270 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
126545305 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
126545340 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
126545362 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
35 74 0.63
37 14 0.12
39 3 0.03
40 27 0.23
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.33
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:126549502 original size:17 final size:19
Alignment explanation
Indices: 126549467--126549503 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
126549457 GAATCTTGTC
126549467 AAGAATTAAGAAAAAGTAA
1 AAGAATTAAGAAAAAGTAA
*
126549486 AAGAA-TAA-AAAAGGTAA
1 AAGAATTAAGAAAAAGTAA
126549503 A
1 A
126549504 GATTTTGGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 9 0.53
18 3 0.18
19 5 0.29
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (19 bp):
AAGAATTAAGAAAAAGTAA
Found at i:126552925 original size:1 final size:1
Alignment explanation
Indices: 126552919--126552946 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
126552909 AGTTACTTCC
126552919 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
126552947 ACTTTTGCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:126553255 original size:20 final size:21
Alignment explanation
Indices: 126553208--126553255 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
126553198 ATGCCACATC
*
126553208 AGTATTCTTATCTTGAATTTCA
1 AGTATT-TTATCCTGAATTTCA
*
126553230 AG-ATTTTATCCTGAATTT-T
1 AGTATTTTATCCTGAATTTCA
126553249 AGTATTT
1 AGTATTT
126553256 AAATTTGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 2 0.09
20 16 0.70
21 3 0.13
22 2 0.09
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.52
Consensus pattern (21 bp):
AGTATTTTATCCTGAATTTCA
Found at i:126554068 original size:6 final size:6
Alignment explanation
Indices: 126554057--126554086 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
126554047 CCATTTAATT
126554057 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
126554087 ACAACCTAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:126563139 original size:28 final size:27
Alignment explanation
Indices: 126563107--126563169 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 27
126563097 AAATGACCAC
126563107 ATAAAAATAAAAC-A-TAATTTGAAAGAAA
1 ATAAAAA-AAAACAATTAATTT-AAA-AAA
126563135 ATAAATAAAAAACAATTAATTTAAAAAA
1 ATAAA-AAAAAACAATTAATTTAAAAAA
126563163 ACTAAAA
1 A-TAAAA
126563170 TGATTTAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
28 15 0.48
29 10 0.32
30 6 0.19
ACGTcount: A:0.70, C:0.05, G:0.03, T:0.22
Consensus pattern (27 bp):
ATAAAAAAAAACAATTAATTTAAAAAA
Found at i:126564861 original size:2 final size:2
Alignment explanation
Indices: 126564849--126564895 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
126564839 TTAACTAAGG
*
126564849 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
126564891 T- TA TA
1 TA TA TA
126564896 AAATTTTAGT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:126569195 original size:2 final size:2
Alignment explanation
Indices: 126569188--126569235 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
126569178 TTGATGTAAA
126569188 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
126569230 AG AT AT
1 AT AT AT
126569236 CCAATTTAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:126589115 original size:37 final size:37
Alignment explanation
Indices: 126589036--126589160 Score: 126
Period size: 37 Copynumber: 3.4 Consensus size: 37
126589026 TGAGTTATAT
* ** * *
126589036 TGTTATTTAGGCTTTGTGCCTACCAAGCTTAGTACTGA
1 TGTTATTCAGGCTTTGTG-CTAAGAAGCTTAGTGCTGG
* *
126589074 TGTTATTCAGGCTTTGTGCTAAGTAGCTTAGTGTTGG
1 TGTTATTCAGGCTTTGTGCTAAGAAGCTTAGTGCTGG
** * *
126589111 TGTTATTCAGGCTTTGT-CCCAGCAGACTTAGTGCTAG
1 TGTTATTCAGGCTTTGTGCTAAGAAG-CTTAGTGCTGG
126589148 TGTTATTCAGGCT
1 TGTTATTCAGGCT
126589161 GAATGCCTTG
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
36 5 0.07
37 52 0.70
38 17 0.23
ACGTcount: A:0.18, C:0.17, G:0.25, T:0.40
Consensus pattern (37 bp):
TGTTATTCAGGCTTTGTGCTAAGAAGCTTAGTGCTGG
Found at i:126599536 original size:22 final size:21
Alignment explanation
Indices: 126599507--126599548 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
126599497 CTATACTTAT
126599507 AATTTCAAAT-AACACCATATA
1 AATTTCAAATCAACA-CATATA
126599528 AATTCTCAAATCAACACATAT
1 AATT-TCAAATCAACACATAT
126599549 CACATATCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.21
22 11 0.58
23 4 0.21
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (21 bp):
AATTTCAAATCAACACATATA
Found at i:126602985 original size:48 final size:48
Alignment explanation
Indices: 126602914--126603009 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
126602904 GGGAAATAGA
126602914 GCAATACAGATTATATACCAGTCGGACTATCAATACTTTTGTCTATGC
1 GCAATACAGATTATATACCAGTCGGACTATCAATACTTTTGTCTATGC
126602962 GCAATACAGATTATATACCAGTCGGACTATCAATACTTTTGTCTATGC
1 GCAATACAGATTATATACCAGTCGGACTATCAATACTTTTGTCTATGC
126603010 ATCATAATTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (48 bp):
GCAATACAGATTATATACCAGTCGGACTATCAATACTTTTGTCTATGC
Found at i:126605820 original size:15 final size:16
Alignment explanation
Indices: 126605802--126605831 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
126605792 AAGCAGGGGA
126605802 AGGAAAG-AAAGAAAG
1 AGGAAAGAAAAGAAAG
126605817 AGGAAAGAAAAGAAA
1 AGGAAAGAAAAGAAA
126605832 AAGGGAGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (16 bp):
AGGAAAGAAAAGAAAG
Found at i:126607313 original size:21 final size:21
Alignment explanation
Indices: 126607296--126607369 Score: 94
Period size: 21 Copynumber: 3.5 Consensus size: 21
126607286 CAAGCACTTT
126607296 ATGTGTCGTATCAGGCACCTC
1 ATGTGTCGTATCAGGCACCTC
*
126607317 GTGTGTCGTATCAGGCACCTC
1 ATGTGTCGTATCAGGCACCTC
* * * * *
126607338 GTGTGTCGTTTTAGGCACTTT
1 ATGTGTCGTATCAGGCACCTC
126607359 ATGTGTCGTAT
1 ATGTGTCGTAT
126607370 ACTGATCAGG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.15, C:0.22, G:0.27, T:0.36
Consensus pattern (21 bp):
ATGTGTCGTATCAGGCACCTC
Found at i:126608250 original size:25 final size:25
Alignment explanation
Indices: 126608210--126608305 Score: 102
Period size: 25 Copynumber: 3.8 Consensus size: 25
126608200 CCAAATAATA
* *
126608210 CGCCATAAAGGATTTCCAGAGAATT
1 CGCCACAAAGGCTTTCCAGAGAATT
* * *
126608235 CGCAACAAAGGCTTTCTAGAGAATA
1 CGCCACAAAGGCTTTCCAGAGAATT
* * *
126608260 CGCCGCAAAGGCTTTTCAGAGGATT
1 CGCCACAAAGGCTTTCCAGAGAATT
* *
126608285 TGCCACAAAGGCTTTCTAGAG
1 CGCCACAAAGGCTTTCCAGAG
126608306 TGGTGAAACA
Statistics
Matches: 56, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (25 bp):
CGCCACAAAGGCTTTCCAGAGAATT
Found at i:126608263 original size:50 final size:50
Alignment explanation
Indices: 126608206--126608305 Score: 137
Period size: 50 Copynumber: 2.0 Consensus size: 50
126608196 TTTCCCAAAT
*
126608206 AATACGCCATAAAGGATTTCCAGAGAATTCGCAACAAAGGCTTTCTAGAG
1 AATACGCCACAAAGGATTTCCAGAGAATTCGCAACAAAGGCTTTCTAGAG
* * * * * *
126608256 AATACGCCGCAAAGGCTTTTCAGAGGATTTGCCACAAAGGCTTTCTAGAG
1 AATACGCCACAAAGGATTTCCAGAGAATTCGCAACAAAGGCTTTCTAGAG
126608306 TGGTGAAACA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (50 bp):
AATACGCCACAAAGGATTTCCAGAGAATTCGCAACAAAGGCTTTCTAGAG
Found at i:126610003 original size:15 final size:16
Alignment explanation
Indices: 126609973--126610006 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
126609963 ACACATGCCA
126609973 ACAACATCTTATATCAT
1 ACAACATC-TATATCAT
126609990 ACAACATC-ATATCAT
1 ACAACATCTATATCAT
126610005 AC
1 AC
126610007 CGCACATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
17 8 0.47
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.29
Consensus pattern (16 bp):
ACAACATCTATATCAT
Found at i:126616192 original size:2 final size:2
Alignment explanation
Indices: 126616185--126616226 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
126616175 GTATTATAAG
126616185 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
126616227 AAGTCTCTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:126617968 original size:2 final size:2
Alignment explanation
Indices: 126617961--126617988 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
126617951 GGATTTCTAT
126617961 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
126617989 AAAGAACTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:126621539 original size:10 final size:10
Alignment explanation
Indices: 126621526--126621595 Score: 51
Period size: 11 Copynumber: 7.3 Consensus size: 10
126621516 ATCATAAAAG
126621526 AATATTTAAA
1 AATATTTAAA
*
126621536 AATATAT-AA
1 AATATTTAAA
*
126621545 AA-ATTGAAA
1 AATATTTAAA
*
126621554 AAAATATTAAA
1 AATAT-TTAAA
126621565 AATA-TT-AA
1 AATATTTAAA
*
126621573 AA-ATGTAAA
1 AATATTTAAA
126621582 ATATATTTAAA
1 A-ATATTTAAA
126621593 AAT
1 AAT
126621596 TGTAAAAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 14
0.69 0.10 0.21
Matches are distributed among these distances:
7 1 0.02
8 7 0.15
9 13 0.28
10 11 0.24
11 14 0.30
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (10 bp):
AATATTTAAA
Found at i:126621574 original size:18 final size:19
Alignment explanation
Indices: 126621526--126621595 Score: 65
Period size: 19 Copynumber: 3.7 Consensus size: 19
126621516 ATCATAAAAG
126621526 AATATTTAAAAATATATAAA
1 AATATTTAAAAATAT-TAAA
**
126621546 AAT-TGAAAAAAATATTAAA
1 AATAT-TTAAAAATATTAAA
*
126621565 AATA-TTAAAAAT-GTAAA
1 AATATTTAAAAATATTAAA
126621582 ATATATTTAAAAAT
1 A-ATATTTAAAAAT
126621596 TGTAAAAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
17 5 0.12
18 9 0.22
19 16 0.39
20 11 0.27
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
AATATTTAAAAATATTAAA
Found at i:126621574 original size:28 final size:29
Alignment explanation
Indices: 126621521--126621603 Score: 100
Period size: 28 Copynumber: 2.9 Consensus size: 29
126621511 AAAAGATCAT
*
126621521 AAAAGAATATTTAAAAATATATAAAAATTG
1 AAAAAAATATTTAAAAATATATAAAAA-TG
126621551 AAAAAAATA-TTAAAAATAT-TAAAAATG
1 AAAAAAATATTTAAAAATATATAAAAATG
* * *
126621578 TAAAATATATTTAAAAAT-TGTAAAAA
1 AAAAAAATATTTAAAAATATATAAAAA
126621604 AAATAAATAT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
27 10 0.21
28 20 0.42
29 10 0.21
30 8 0.17
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (29 bp):
AAAAAAATATTTAAAAATATATAAAAATG
Found at i:126621604 original size:38 final size:38
Alignment explanation
Indices: 126621562--126621654 Score: 100
Period size: 38 Copynumber: 2.4 Consensus size: 38
126621552 AAAAAATATT
126621562 AAAAATATTAAAAATG-TAAAATATATTTAAAAATTGTA
1 AAAAATATTAAAAATGTTAAAA-ATATTTAAAAATTGTA
* * * *
126621600 AAAAA-AATAAATATTGTTAAAAATCTTTTAAAATTGTA
1 AAAAATATTAAA-AATGTTAAAAATATTTAAAAATTGTA
126621638 AAAAAGTTATTAAAAAT
1 AAAAA--TATTAAAAAT
126621655 AAAAAAAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
37 5 0.11
38 27 0.61
39 5 0.11
40 2 0.05
41 5 0.11
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.34
Consensus pattern (38 bp):
AAAAATATTAAAAATGTTAAAAATATTTAAAAATTGTA
Found at i:126621726 original size:3 final size:3
Alignment explanation
Indices: 126621718--126621746 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
126621708 ACAAATCAAA
126621718 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
126621747 TAATAATACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:126621945 original size:20 final size:20
Alignment explanation
Indices: 126621915--126622102 Score: 99
Period size: 20 Copynumber: 9.6 Consensus size: 20
126621905 CCACCAATTC
*
126621915 ACAATTTTTTAATCATTATTT
1 ACAA-TTTTTAATAATTATTT
126621936 ACAATTTTTAATAATTATTT
1 ACAATTTTTAATAATTATTT
* * *
126621956 GCATTTTTTAAT-ATT-TTCC
1 ACAATTTTTAATAATTATT-T
* *
126621975 CCAATTTTTTATAATT-TTT
1 ACAATTTTTAATAATTATTT
* *
126621994 ACAAGTTTTAAATAAGGT-TTT
1 ACAA-TTTTTAATAA-TTATTT
* *
126622015 ATAATTTTTAATAATTTTTT
1 ACAATTTTTAATAATTATTT
*
126622035 ACAA-TATTAA-AA-TATTTT
1 ACAATTTTTAATAATTA-TTT
* *
126622053 AAAAAATATTTAATAATTA-TT
1 --ACAATTTTTAATAATTATTT
** *
126622074 ACAATAATTAAT--TTTTTT
1 ACAATTTTTAATAATTATTT
126622092 ACAATTTTTAA
1 ACAATTTTTAA
126622103 ATTTTTTTTA
Statistics
Matches: 129, Mismatches: 26, Indels: 27
0.71 0.14 0.15
Matches are distributed among these distances:
17 3 0.02
18 18 0.14
19 31 0.24
20 56 0.43
21 17 0.13
22 2 0.02
23 2 0.02
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.53
Consensus pattern (20 bp):
ACAATTTTTAATAATTATTT
Found at i:126622044 original size:19 final size:19
Alignment explanation
Indices: 126622022--126622109 Score: 60
Period size: 18 Copynumber: 4.7 Consensus size: 19
126622012 TTTATAATTT
126622022 TTAATAATTTTTTACAATA
1 TTAATAATTTTTTACAATA
* *
126622041 TTAA-AATATTTTAAAAAATA
1 TTAATAAT-TTTT-TACAATA
*
126622061 TTTAATAA-TTATTACAATAA
1 -TTAATAATTTTTTACAAT-A
*
126622081 TTAAT--TTTTTTACAATT
1 TTAATAATTTTTTACAATA
*
126622098 TTTA-AATTTTTT
1 TTAATAATTTTTT
126622110 TTAATTTTTA
Statistics
Matches: 53, Mismatches: 8, Indels: 17
0.68 0.10 0.22
Matches are distributed among these distances:
17 3 0.06
18 18 0.34
19 17 0.32
20 9 0.17
21 4 0.08
22 2 0.04
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (19 bp):
TTAATAATTTTTTACAATA
Found at i:126622095 original size:18 final size:19
Alignment explanation
Indices: 126622072--126622168 Score: 67
Period size: 19 Copynumber: 5.1 Consensus size: 19
126622062 TTAATAATTA
126622072 TTACAATAATT-AATTTTT
1 TTACAATAATTAAATTTTT
**
126622090 TTACAATTTTTAAATTTTT
1 TTACAATAATTAAATTTTT
* **
126622109 TT-TAATTTTTAACATTTTT
1 TTACAATAATTAA-ATTTTT
126622128 TT--AATAATTTAAATATTTTT
1 TTACAATAA-TT-AA-ATTTTT
**
126622148 TTACAATTTTTAAATTTTT
1 TTACAATAATTAAATTTTT
126622167 TT
1 TT
126622169 TATAAATTTT
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
18 21 0.32
19 27 0.42
20 12 0.18
21 2 0.03
22 3 0.05
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (19 bp):
TTACAATAATTAAATTTTT
Found at i:126622148 original size:40 final size:42
Alignment explanation
Indices: 126622017--126622188 Score: 127
Period size: 39 Copynumber: 4.4 Consensus size: 42
126622007 AAGGTTTTAT
* * * * *
126622017 AATTTT-TAATAATTTTTTACAA-TATTAAAATATTTTAAAA
1 AATTTTATAATATTTTTTTACAATTTTTAAATTTTTTTAATA
* * * ** *
126622057 AATATT-TAATA-ATTATTACAATAATT-AATTTTTTT-A-C
1 AATTTTATAATATTTTTTTACAATTTTTAAATTTTTTTAATA
*
126622094 AATTTT-TAA-ATTTTTTT-TAATTTTTAACATTTTTTTAAT-
1 AATTTTATAATATTTTTTTACAATTTTTAA-ATTTTTTTAATA
*
126622133 AA-TTTA-AATATTTTTTTACAATTTTTAAATTTTTTTTATA
1 AATTTTATAATATTTTTTTACAATTTTTAAATTTTTTTAATA
126622173 AATTTTATAATATTTT
1 AATTTTATAATATTTT
126622189 GGTTTGGTCA
Statistics
Matches: 105, Mismatches: 15, Indels: 22
0.74 0.11 0.15
Matches are distributed among these distances:
36 6 0.06
37 13 0.12
38 14 0.13
39 36 0.34
40 24 0.23
41 4 0.04
42 8 0.08
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (42 bp):
AATTTTATAATATTTTTTTACAATTTTTAAATTTTTTTAATA
Found at i:126622178 original size:20 final size:20
Alignment explanation
Indices: 126622085--126622179 Score: 108
Period size: 19 Copynumber: 4.8 Consensus size: 20
126622075 CAATAATTAA
*
126622085 TTTTTTTACAATTTTTAAA-
1 TTTTTTTATAATTTTTAAAT
126622104 TTTTTTT-TAATTTTTAACAT
1 TTTTTTTATAATTTTTAA-AT
*
126622124 TTTTTTAATAA--TTTAAAT
1 TTTTTTTATAATTTTTAAAT
*
126622142 ATTTTTTTACAATTTTTAAAT
1 -TTTTTTTATAATTTTTAAAT
*
126622163 TTTTTTTATAAATTTTA
1 TTTTTTTATAATTTTTA
126622180 TAATATTTTG
Statistics
Matches: 64, Mismatches: 6, Indels: 11
0.79 0.07 0.14
Matches are distributed among these distances:
18 11 0.17
19 22 0.34
20 21 0.33
21 10 0.16
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTTTTATAATTTTTAAAT
Found at i:126622188 original size:20 final size:19
Alignment explanation
Indices: 126622084--126622188 Score: 104
Period size: 21 Copynumber: 5.3 Consensus size: 19
126622074 ACAATAATTA
126622084 ATTTTTTTACAATTTTTAA-
1 ATTTTTTTA-AATTTTTAAT
* *
126622103 ATTTTTTTTAATTTTTAAC
1 ATTTTTTTAAATTTTTAAT
* *
126622122 ATTTTTTTAATAATTTAAAT
1 ATTTTTTTAA-ATTTTTAAT
126622142 ATTTTTTTACAATTTTTAAAT
1 ATTTTTTTA-AATTTTT-AAT
*
126622163 TTTTTTTATAAATTTTATAAT
1 ATTTTTT-TAAATTTT-TAAT
126622184 ATTTT
1 ATTTT
126622189 GGTTTGGTCA
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
18 9 0.13
19 17 0.24
20 19 0.27
21 23 0.32
22 3 0.04
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (19 bp):
ATTTTTTTAAATTTTTAAT
Found at i:126626247 original size:16 final size:16
Alignment explanation
Indices: 126626226--126626263 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
126626216 TTTGGTTCAC
*
126626226 TGTAATAGAATAGGGT
1 TGTAATAGAATAGAGT
*
126626242 TGTAATTGAATAGAGT
1 TGTAATAGAATAGAGT
126626258 TGTAAT
1 TGTAAT
126626264 CAGTAATTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.26, T:0.37
Consensus pattern (16 bp):
TGTAATAGAATAGAGT
Found at i:126626331 original size:44 final size:46
Alignment explanation
Indices: 126626245--126626337 Score: 129
Period size: 44 Copynumber: 2.1 Consensus size: 46
126626235 ATAGGGTTGT
* *
126626245 AATTGAATAGAGTTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
1 AATTGAATAGAGCTGTAATCAGTAATTCAATTGTTTAGTTGAATGG
*
126626291 AATTGAATAGAGCTGTAAT-AG-AATTC-TTGTGTTTAGTTGAATGG
1 AATTGAATAGAGCTGTAATCAGTAATTCAAT-TGTTTAGTTGAATGG
126626335 AAT
1 AAT
126626338 AGATGTTGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
43 1 0.02
44 22 0.51
45 2 0.05
46 18 0.42
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.39
Consensus pattern (46 bp):
AATTGAATAGAGCTGTAATCAGTAATTCAATTGTTTAGTTGAATGG
Found at i:126626539 original size:12 final size:11
Alignment explanation
Indices: 126626512--126626577 Score: 52
Period size: 12 Copynumber: 6.1 Consensus size: 11
126626502 TATTAAATAC
126626512 AATTTAATAA-
1 AATTTAATAAT
126626522 AA--TAATATAT
1 AATTTAATA-AT
126626532 AATTTAATAAT
1 AATTTAATAAT
*
126626543 ATTCTTAAT-AT
1 AAT-TTAATAAT
126626554 AATTATTAATAAT
1 AA-T-TTAATAAT
126626567 -ATTTAATAAT
1 AATTTAATAAT
126626577 A
1 A
126626578 GTTTTAATAT
Statistics
Matches: 45, Mismatches: 3, Indels: 15
0.71 0.05 0.24
Matches are distributed among these distances:
8 5 0.11
9 1 0.02
10 12 0.27
11 8 0.18
12 17 0.38
13 2 0.04
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (11 bp):
AATTTAATAAT
Found at i:126626552 original size:24 final size:24
Alignment explanation
Indices: 126626524--126626569 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
126626514 TTTAATAAAA
126626524 TAATATATAAT-TTAATAATATTCT
1 TAATATA-AATATTAATAATATTCT
*
126626548 TAATATAATTATTAATAATATT
1 TAATATAAATATTAATAATATT
126626570 TAATAATAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (24 bp):
TAATATAAATATTAATAATATTCT
Found at i:126626583 original size:12 final size:11
Alignment explanation
Indices: 126626524--126626586 Score: 58
Period size: 12 Copynumber: 5.5 Consensus size: 11
126626514 TTTAATAAAA
*
126626524 TAATATATAATT
1 TAATA-ATATTT
126626536 TAATAATATTCT
1 TAATAATATT-T
126626548 TAAT-ATAATTAT
1 TAATAAT-ATT-T
126626560 TAATAATA-TT
1 TAATAATATTT
126626570 TAATAATAGTTT
1 TAATAATA-TTT
126626582 TAATA
1 TAATA
126626587 TAAAATTATT
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
10 9 0.20
11 7 0.16
12 26 0.59
13 2 0.05
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (11 bp):
TAATAATATTT
Found at i:126627007 original size:27 final size:27
Alignment explanation
Indices: 126626933--126627021 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 27
126626923 ATAACAAAAT
126626933 AAAAACTCATAG-TCTTT-TGTTATTC
1 AAAAACTCATAGTTCTTTATGTTATTC
*
126626958 AAAAAC-CATAGTCCTTAATTTTATGTTATTC
1 AAAAACTCATAG---TT--CTTTATGTTATTC
126626989 AAAAACTCATAGTTCTTTATGTTATTC
1 AAAAACTCATAGTTCTTTATGTTATTC
126627016 AAAAAC
1 AAAAAC
126627022 ATGAAGAAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
24 5 0.09
25 6 0.11
27 18 0.33
28 1 0.02
29 2 0.04
30 3 0.06
31 14 0.26
32 5 0.09
ACGTcount: A:0.37, C:0.16, G:0.07, T:0.40
Consensus pattern (27 bp):
AAAAACTCATAGTTCTTTATGTTATTC
Found at i:126633299 original size:28 final size:28
Alignment explanation
Indices: 126633267--126633321 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
126633257 TACTACAGAA
126633267 ATTCAACCAAAATTATTATATTTAAAAG
1 ATTCAACCAAAATTATTATATTTAAAAG
126633295 ATTCAACCAAAATTATTATATTTAAAA
1 ATTCAACCAAAATTATTATATTTAAAA
126633322 AATTTATCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.36
Consensus pattern (28 bp):
ATTCAACCAAAATTATTATATTTAAAAG
Found at i:126637019 original size:15 final size:15
Alignment explanation
Indices: 126636999--126637030 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
126636989 GTACAAACAA
126636999 AAAGATGATAAATGC
1 AAAGATGATAAATGC
126637014 AAAGATGATAAATGC
1 AAAGATGATAAATGC
126637029 AA
1 AA
126637031 GGATACGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.06, G:0.19, T:0.19
Consensus pattern (15 bp):
AAAGATGATAAATGC
Found at i:126641654 original size:20 final size:19
Alignment explanation
Indices: 126641616--126641654 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
126641606 GGTGAACACC
*
126641616 AGAACACTCGATACAAAGA
1 AGAACACCCGATACAAAGA
*
126641635 AGAACACCCAGATTCAAAGA
1 AGAACACCC-GATACAAAGA
126641655 TGCCCAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.51, C:0.23, G:0.15, T:0.10
Consensus pattern (19 bp):
AGAACACCCGATACAAAGA
Found at i:126653202 original size:44 final size:45
Alignment explanation
Indices: 126653112--126653240 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
126653102 GACAGAACGA
*
126653112 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
126653158 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
126653202 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
126653241 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:126660588 original size:44 final size:45
Alignment explanation
Indices: 126660498--126660626 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
126660488 GACAGAACGA
*
126660498 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
126660544 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
126660588 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
126660627 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:126664726 original size:18 final size:18
Alignment explanation
Indices: 126664703--126664740 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
126664693 GATGATAATT
126664703 TAGCCAATTCATCTGACA
1 TAGCCAATTCATCTGACA
126664721 TAGCCAATTCATCTGACA
1 TAGCCAATTCATCTGACA
126664739 TA
1 TA
126664741 CTTCTTGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (18 bp):
TAGCCAATTCATCTGACA
Found at i:126675962 original size:13 final size:13
Alignment explanation
Indices: 126675944--126675970 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
126675934 GCTCAGTAGG
126675944 GACACGCCCGTGT
1 GACACGCCCGTGT
126675957 GACACGCCCGTGT
1 GACACGCCCGTGT
126675970 G
1 G
126675971 CGATTACTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:126701234 original size:5 final size:5
Alignment explanation
Indices: 126701226--126701251 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
126701216 GAGATGGAAT
126701226 TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA T
126701252 ATATTTGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:126701251 original size:26 final size:26
Alignment explanation
Indices: 126701200--126701251 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
126701190 TGAAATTTTC
* * *
126701200 TCGAATCGAGTCGAGTGAGATGGAAT
1 TCGAATCGAATCGAATGAGATCGAAT
126701226 TCGAATCGAATCGAATCGA-ATCGAAT
1 TCGAATCGAATCGAAT-GAGATCGAAT
126701252 ATATTTGTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (26 bp):
TCGAATCGAATCGAATGAGATCGAAT
Found at i:126701759 original size:213 final size:215
Alignment explanation
Indices: 126701502--126701904 Score: 600
Period size: 213 Copynumber: 1.9 Consensus size: 215
126701492 GTCGAAGTAA
* *
126701502 ACAACGACATTATAATAAAAAAACATAAGAAAAAGTCCAAAATACAATAGAAACTTACACCACTC
1 ACAACAACATTATAATAAAAAAACATAAGAAAAAGTCCAAAATACAATAGAAACCTACACCACTC
* * * * *
126701567 CAAACAAAAAAAA-AACACAACAAGAGTTCAATTAACCAACGACAGT-AA-CAAACCAAACCAAA
66 CAAAAAAAAAAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAAACCAAACCAAACCAAA
*
126701629 CTAATAACAATAACACATAAGCTC-AAAAACCATTATAGAATAGTTTAAGTTTCTTCATGAGTCC
131 CTAATAACAATAACACATAAGCTCAAAAAACCATTATAGAATAGTTTAACTTTCTTCATGAGTCC
126701693 AAATAAACAACAAAAATAAT
196 AAATAAACAACAAAAATAAT
*
126701713 ACAACAACATTGTAATTAAAAAAAACATAAGCAAAAA-TCCAAAATACAATAGAAACCTACACCA
1 ACAACAACATTATAA-T-AAAAAAACATAAG-AAAAAGTCCAAAATACAATAGAAACCTACACCA
* *
126701777 GTCCAAAAAAAAAAAAGAACACAACAAAAGCTCAATTATCCAACAACAATAACAAACCAAACCAA
63 CTCCAAAAAAAAAAAAGAACACAACAAAAGCTCAATTAACCAACAACAAT---AAACCAAACCAA
* *
126701842 ACCAAACTAATAACAATAACACATCAGTTCAAAAAACCATTATAGAATAGTTTAACTTTCTTC
125 ACCAAACTAATAACAATAACACATAAGCTCAAAAAACCATTATAGAATAGTTTAACTTTCTTC
126701905 TTGTGCTTCA
Statistics
Matches: 169, Mismatches: 13, Indels: 11
0.88 0.07 0.06
Matches are distributed among these distances:
211 13 0.08
212 1 0.01
213 53 0.31
214 33 0.20
218 2 0.01
219 36 0.21
220 31 0.18
ACGTcount: A:0.56, C:0.21, G:0.06, T:0.18
Consensus pattern (215 bp):
ACAACAACATTATAATAAAAAAACATAAGAAAAAGTCCAAAATACAATAGAAACCTACACCACTC
CAAAAAAAAAAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAAACCAAACCAAACCAAA
CTAATAACAATAACACATAAGCTCAAAAAACCATTATAGAATAGTTTAACTTTCTTCATGAGTCC
AAATAAACAACAAAAATAAT
Found at i:126704321 original size:30 final size:30
Alignment explanation
Indices: 126704286--126704352 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
126704276 GTTAAATTAA
*
126704286 AAATTAATTAATATAATAGTATAATAGCAT
1 AAATTAATTAATATAATAGTACAATAGCAT
126704316 AAATTAATTAATATAATAGTACAATAGCAT
1 AAATTAATTAATATAATAGTACAATAGCAT
126704346 AAATTAA
1 AAATTAA
126704353 AAATAGATAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (30 bp):
AAATTAATTAATATAATAGTACAATAGCAT
Found at i:126707810 original size:30 final size:31
Alignment explanation
Indices: 126707776--126707849 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 31
126707766 TTTCATTTTC
*
126707776 TTTATAATTATTTTA-TATTTTCTTTA-TCTA
1 TTTATAATTATTTTATTATTAT-TTTAGTCTA
*
126707806 TTTAT-TTTATTTTATTATTATTTTAGTCTA
1 TTTATAATTATTTTATTATTATTTTAGTCTA
* *
126707836 TTTTTAATTCTTTT
1 TTTATAATTATTTT
126707850 GATTCTTGTT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
29 12 0.33
30 18 0.50
31 6 0.17
ACGTcount: A:0.23, C:0.05, G:0.01, T:0.70
Consensus pattern (31 bp):
TTTATAATTATTTTATTATTATTTTAGTCTA
Found at i:126709546 original size:6 final size:6
Alignment explanation
Indices: 126709531--126709610 Score: 97
Period size: 6 Copynumber: 13.3 Consensus size: 6
126709521 ATTGAGTCTA
* * * * *
126709531 TTTATC TTTATG TTTATA TTTATT TTTATT TTTATT TTCATT TTTATC
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* *
126709579 TTTATC TTTATT TTTATT TTTATG TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TT
126709611 GTCTTTATAT
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 65 1.00
ACGTcount: A:0.17, C:0.05, G:0.03, T:0.75
Consensus pattern (6 bp):
TTTATT
Found at i:126709552 original size:18 final size:18
Alignment explanation
Indices: 126709529--126709622 Score: 102
Period size: 18 Copynumber: 5.3 Consensus size: 18
126709519 CCATTGAGTC
* *
126709529 TATTTATCTTTATGTTTA
1 TATTTATTTTTATCTTTA
*
126709547 TATTTATTTTTATTTTTA
1 TATTTATTTTTATCTTTA
126709565 T-TTTCATTTTTATCTTTA
1 TATTT-ATTTTTATCTTTA
* *
126709583 TCTTTATTTTTATTTTTA
1 TATTTATTTTTATCTTTA
* *
126709601 TGTTTA-TTTTGTCTTTA
1 TATTTATTTTTATCTTTA
126709618 TATTT
1 TATTT
126709623 TGAACTCTAT
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
17 16 0.24
18 47 0.71
19 3 0.05
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.73
Consensus pattern (18 bp):
TATTTATTTTTATCTTTA
Found at i:126710564 original size:5 final size:5
Alignment explanation
Indices: 126710556--126710597 Score: 68
Period size: 5 Copynumber: 8.6 Consensus size: 5
126710546 TTTATTATTC
*
126710556 AAAAA AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG -AAAG AAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAA
126710598 GATATATACA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
4 4 0.11
5 31 0.89
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:126713017 original size:19 final size:20
Alignment explanation
Indices: 126712972--126713018 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
126712962 GTAGAAATTA
*
126712972 TTATTCTCAGAAAATAGAAT
1 TTATTCTAAGAAAATAGAAT
126712992 TTATTCTAAGAAAATA-AAT
1 TTATTCTAAGAAAATAGAAT
*
126713011 TTCTTCTA
1 TTATTCTA
126713019 CTTTTTGGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.43, C:0.11, G:0.06, T:0.40
Consensus pattern (20 bp):
TTATTCTAAGAAAATAGAAT
Found at i:126717575 original size:57 final size:58
Alignment explanation
Indices: 126717503--126717628 Score: 148
Period size: 57 Copynumber: 2.2 Consensus size: 58
126717493 CCAAGTCATT
* * * * *
126717503 TTCATTTTTCTTTTTCTTTTTGGAGCAAACCACATTCATTTCCAAAT-TATT-CCATTTC
1 TTCA-TTTTCATTTTCATTTCGGAGAAAACCACAATCATTTCCAAATGT-TTGCCATTTC
* *
126717561 TTCATTTTCATTTTCATTTCGGAGAAAACCATAATCATTTCCAAATGTTTGTCATTTC
1 TTCATTTTCATTTTCATTTCGGAGAAAACCACAATCATTTCCAAATGTTTGCCATTTC
*
126717619 TCCATTTTCA
1 TTCATTTTCA
126717629 CTATTTCTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
57 38 0.66
58 20 0.34
ACGTcount: A:0.25, C:0.21, G:0.06, T:0.48
Consensus pattern (58 bp):
TTCATTTTCATTTTCATTTCGGAGAAAACCACAATCATTTCCAAATGTTTGCCATTTC
Found at i:126724280 original size:37 final size:37
Alignment explanation
Indices: 126724238--126724311 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
126724228 GTTTATGTCT
126724238 TGGTCATTTTTAATTTCAAAAAGTTATAAAATGGTCA
1 TGGTCATTTTTAATTTCAAAAAGTTATAAAATGGTCA
126724275 TGGTCATTTTTAATTTCAAAAAGTTATAAAATGGTCA
1 TGGTCATTTTTAATTTCAAAAAGTTATAAAATGGTCA
126724312 CTAAATCGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.41
Consensus pattern (37 bp):
TGGTCATTTTTAATTTCAAAAAGTTATAAAATGGTCA
Found at i:126726672 original size:15 final size:15
Alignment explanation
Indices: 126726652--126726681 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
126726642 CATTTTATTT
126726652 ATATTAGGATAATTA
1 ATATTAGGATAATTA
126726667 ATATTAGGATAATTA
1 ATATTAGGATAATTA
126726682 TTAGGATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (15 bp):
ATATTAGGATAATTA
Found at i:126726746 original size:20 final size:20
Alignment explanation
Indices: 126726706--126726753 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
126726696 ATTTTAGGAT
*
126726706 TTTAT-TTTAATTATCTTTA
1 TTTATCTTTAATTATCTGTA
126726725 TTTATCTTTAATTAAT-TGTA
1 TTTATCTTTAATT-ATCTGTA
126726745 TTTATCTTT
1 TTTATCTTT
126726754 TTAGAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 5 0.19
20 19 0.73
21 2 0.08
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTATCTTTAATTATCTGTA
Found at i:126730936 original size:23 final size:21
Alignment explanation
Indices: 126730884--126730928 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
126730874 TATTCTTTTA
*
126730884 TTATATATATTATTATTATATT
1 TTATATA-ATTATTATTATAAT
126730906 TTAT-TAATTATTATTATAAT
1 TTATATAATTATTATTATAAT
126730926 TTA
1 TTA
126730929 CTTATAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 16 0.73
21 2 0.09
22 4 0.18
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TTATATAATTATTATTATAAT
Found at i:126731140 original size:19 final size:20
Alignment explanation
Indices: 126731105--126731142 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
126731095 AATCCTTACA
126731105 CTAAATTAACGTTAATTAAG
1 CTAAATTAACGTTAATTAAG
*
126731125 CTAAATTTAC-TTAATTAA
1 CTAAATTAACGTTAATTAA
126731143 AATCTAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.45, C:0.11, G:0.05, T:0.39
Consensus pattern (20 bp):
CTAAATTAACGTTAATTAAG
Found at i:126736847 original size:19 final size:20
Alignment explanation
Indices: 126736813--126736850 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
126736803 AATCCTTACA
126736813 CTAAATTAACCTTAATTAAG
1 CTAAATTAACCTTAATTAAG
*
126736833 CTAAATTTA-CTTAATTAA
1 CTAAATTAACCTTAATTAA
126736851 AATCTAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39
Consensus pattern (20 bp):
CTAAATTAACCTTAATTAAG
Found at i:126737589 original size:51 final size:51
Alignment explanation
Indices: 126737513--126737751 Score: 205
Period size: 51 Copynumber: 4.7 Consensus size: 51
126737503 CCATGACAAC
** * * *
126737513 GGTATATGGTGTAAGACCATAGATGAAAGAGGCTATGCCAGTCTGGTATAA
1 GGTATATGGCATAAGACTATAGATGAAAGAGGCTATGCCAGTATAGTATAA
* *
126737564 GGTATATGGCATAAGACTATAGATGAAAGAGGCTATACCAGTCTAGTATAA
1 GGTATATGGCATAAGACTATAGATGAAAGAGGCTATGCCAGTATAGTATAA
* * * *** *
126737615 GGTATATGACGTAAGA-TCATAGATGAAAGAGACTATTATAGTATGGTA-AA
1 GGTATATGGCATAAGACT-ATAGATGAAAGAGGCTATGCCAGTATAGTATAA
* * * * * * * * * *
126737665 GGTATATGACATAAGACCATGGATGAAATATGCCATGGCGGTAAATTATAA
1 GGTATATGGCATAAGACTATAGATGAAAGAGGCTATGCCAGTATAGTATAA
* *
126737716 GGTA-ATCGGTATAAGACTATAGATGAAAGATGCTAT
1 GGTATAT-GGCATAAGACTATAGATGAAAGAGGCTAT
126737752 AGAAGCTATA
Statistics
Matches: 151, Mismatches: 33, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
50 38 0.25
51 113 0.75
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.26
Consensus pattern (51 bp):
GGTATATGGCATAAGACTATAGATGAAAGAGGCTATGCCAGTATAGTATAA
Found at i:126740223 original size:25 final size:24
Alignment explanation
Indices: 126740195--126740247 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
126740185 CACAAACACA
126740195 GCTCTTTATAAGCGTCCTGATATAG
1 GCTCTTTATAAGCGTCCTGATAT-G
* * *
126740220 GCTCTTTTTGAGCTTCCTGATATG
1 GCTCTTTATAAGCGTCCTGATATG
126740244 GCTC
1 GCTC
126740248 GCTTGAACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.40
Consensus pattern (24 bp):
GCTCTTTATAAGCGTCCTGATATG
Found at i:126740258 original size:23 final size:25
Alignment explanation
Indices: 126740209--126740266 Score: 66
Period size: 23 Copynumber: 2.4 Consensus size: 25
126740199 TTTATAAGCG
** *
126740209 TCCTGATATAGGCTCTTTTTGAGCT
1 TCCTGATATAGGCTCTGCTTGAACT
126740234 TCCTGATAT-GGCTC-GCTTGAACT
1 TCCTGATATAGGCTCTGCTTGAACT
*
126740257 TCCTGTTATA
1 TCCTGATATA
126740267 TGGTTATCTA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
23 14 0.50
24 5 0.18
25 9 0.32
ACGTcount: A:0.17, C:0.22, G:0.19, T:0.41
Consensus pattern (25 bp):
TCCTGATATAGGCTCTGCTTGAACT
Found at i:126742469 original size:43 final size:44
Alignment explanation
Indices: 126742398--126742502 Score: 142
Period size: 43 Copynumber: 2.4 Consensus size: 44
126742388 GTCTAGGAAG
* * * *
126742398 GGTCTTACACGAAATC-GAATAACGATGCCAATGTTCCAGACAT
1 GGTCTTACACGTAATCACAATAACAATGCCAATGTGCCAGACAT
*
126742441 GGTCTTACACGTAATCACAAT-ACAATGCCAATGTGCTAGACAT
1 GGTCTTACACGTAATCACAATAACAATGCCAATGTGCCAGACAT
*
126742484 GGTCTTACATGTAATCACA
1 GGTCTTACACGTAATCACA
126742503 TCTCGGTAAC
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 52 0.95
44 3 0.05
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (44 bp):
GGTCTTACACGTAATCACAATAACAATGCCAATGTGCCAGACAT
Found at i:126746968 original size:27 final size:27
Alignment explanation
Indices: 126746938--126746992 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
126746928 TAAGTTCTGG
126746938 TAAGTTTTCTTCTCAGGAAATGATGAC
1 TAAGTTTTCTTCTCAGGAAATGATGAC
126746965 TAAGTTTTCTTCTCAGGAAATGATGAC
1 TAAGTTTTCTTCTCAGGAAATGATGAC
126746992 T
1 T
126746993 TCTTCCTCTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (27 bp):
TAAGTTTTCTTCTCAGGAAATGATGAC
Found at i:126750078 original size:12 final size:12
Alignment explanation
Indices: 126750061--126750085 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
126750051 ACCAACAACA
126750061 AGCCCATGTGCC
1 AGCCCATGTGCC
126750073 AGCCCATGTGCC
1 AGCCCATGTGCC
126750085 A
1 A
126750086 CTCACACAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.40, G:0.24, T:0.16
Consensus pattern (12 bp):
AGCCCATGTGCC
Found at i:126756787 original size:24 final size:24
Alignment explanation
Indices: 126756755--126756806 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
126756745 AGCAAAACAA
126756755 ACATTTAAGGCATTCATCGGGACT
1 ACATTTAAGGCATTCATCGGGACT
*
126756779 ACATTTAAGGCATTCATCGGGAGT
1 ACATTTAAGGCATTCATCGGGACT
126756803 ACAT
1 ACAT
126756807 GACAAAACAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (24 bp):
ACATTTAAGGCATTCATCGGGACT
Found at i:126763480 original size:21 final size:20
Alignment explanation
Indices: 126763454--126763502 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
126763444 ACCTAGGATG
*
126763454 TGAATTTAATTTAATTGATT
1 TGAATTTAATTAAATTGATT
126763474 ATGAATTGT-ATTAAATTGATT
1 -TGAATT-TAATTAAATTGATT
*
126763495 TAAATTTA
1 TGAATTTA
126763503 CTTGTATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 1 0.04
20 5 0.21
21 17 0.71
22 1 0.04
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (20 bp):
TGAATTTAATTAAATTGATT
Found at i:126771777 original size:7 final size:8
Alignment explanation
Indices: 126771760--126771784 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
126771750 TAGGGTTTTG
126771760 TTTTAATT
1 TTTTAATT
126771768 TTTTAATT
1 TTTTAATT
126771776 TTTTAATT
1 TTTTAATT
126771784 T
1 T
126771785 GAGTGATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTAATT
Found at i:126774712 original size:45 final size:43
Alignment explanation
Indices: 126774647--126774776 Score: 140
Period size: 43 Copynumber: 3.0 Consensus size: 43
126774637 ACATAGGATC
* *
126774647 CAATATGT-GTTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
1 CAATATGTGGTTCCGTGTAAGACCACATCTGGGACGTTGGCAT
126774689 CGATATATGTGGTTCCGTGTAAGACC-CTATCTGGGACAG-TGGCAT
1 C-A-ATATGTGGTTCCGTGTAAGACCAC-ATCTGGGAC-GTTGGCAT
* * ** *
126774734 CAATATGAGATAGCATGTAAGACCACATCTGGGACGTTGGCAT
1 CAATATGTGGTTCCGTGTAAGACCACATCTGGGACGTTGGCAT
126774777 TGTTCGATAT
Statistics
Matches: 74, Mismatches: 7, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.03
43 33 0.45
44 9 0.12
45 29 0.39
46 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (43 bp):
CAATATGTGGTTCCGTGTAAGACCACATCTGGGACGTTGGCAT
Found at i:126778326 original size:29 final size:29
Alignment explanation
Indices: 126778264--126778338 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
126778254 GTGACGAGAT
* * *
126778264 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
126778293 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
*
126778322 TGGCACTATGTGTGCGA
1 TGGCACTAAGTGTGCGA
126778339 ACTCTACACA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:126781811 original size:53 final size:53
Alignment explanation
Indices: 126781730--126781880 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
126781720 CTTACACGGT
* *
126781730 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
126781785 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
126781838 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
126781881 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:126789327 original size:53 final size:53
Alignment explanation
Indices: 126789246--126789396 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
126789236 CTTACACGGT
* *
126789246 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
126789301 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
126789354 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
126789397 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:126796472 original size:29 final size:29
Alignment explanation
Indices: 126796410--126796484 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
126796400 GTGACGAGAT
* * *
126796410 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
126796439 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
*
126796468 TGGCACTATGTGTGCGA
1 TGGCACTAAGTGTGCGA
126796485 ACTCTACACA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:126797998 original size:17 final size:16
Alignment explanation
Indices: 126797974--126798018 Score: 63
Period size: 17 Copynumber: 2.8 Consensus size: 16
126797964 TTTTTGACAA
126797974 TTTCTTTTTTTCTGCC
1 TTTCTTTTTTTCTGCC
*
126797990 TTTCGTTTTTCTCTGCC
1 TTTC-TTTTTTTCTGCC
*
126798007 GTTCTTTTTTTC
1 TTTCTTTTTTTC
126798019 CTTCACTGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 11 0.44
17 14 0.56
ACGTcount: A:0.00, C:0.24, G:0.09, T:0.67
Consensus pattern (16 bp):
TTTCTTTTTTTCTGCC
Found at i:126798881 original size:18 final size:17
Alignment explanation
Indices: 126798848--126798881 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
126798838 AATTGGGCCA
*
126798848 TGTGGGCCACATGGGCG
1 TGTGGGCCACACGGGCG
126798865 TGTGGGCCTACACGGGC
1 TGTGGGCC-ACACGGGC
126798882 AAACAACATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.12, C:0.26, G:0.44, T:0.18
Consensus pattern (17 bp):
TGTGGGCCACACGGGCG
Found at i:126811631 original size:22 final size:23
Alignment explanation
Indices: 126811605--126811649 Score: 83
Period size: 22 Copynumber: 2.0 Consensus size: 23
126811595 ACCTGATCAG
126811605 AATACGACACAT-AAGTGCCTGA
1 AATACGACACATAAAGTGCCTGA
126811627 AATACGACACATAAAGTGCCTGA
1 AATACGACACATAAAGTGCCTGA
126811650 TCAGTAAAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (23 bp):
AATACGACACATAAAGTGCCTGA
Found at i:126811865 original size:23 final size:24
Alignment explanation
Indices: 126811839--126811933 Score: 93
Period size: 28 Copynumber: 3.6 Consensus size: 24
126811829 AAATGTCCAA
126811839 CCAAAACACACCAG-TATAATCCT
1 CCAAAACACACCAGATATAATCCT
126811862 CCAAAACACACCAGTATCATATAATCCT
1 CCAAAACACACCAG----ATATAATCCT
*
126811890 CCCAAACACACCAGAATAATATAATCCAT
1 CCAAAACACACCAG----ATATAATCC-T
126811919 CCAAAACACACCAGA
1 CCAAAACACACCAGA
126811934 ATAGCACAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
23 14 0.23
25 1 0.02
28 33 0.53
29 14 0.23
ACGTcount: A:0.46, C:0.34, G:0.04, T:0.16
Consensus pattern (24 bp):
CCAAAACACACCAGATATAATCCT
Found at i:126811935 original size:29 final size:28
Alignment explanation
Indices: 126811853--126811936 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
126811843 AACACACCAG
* *
126811853 TATAATCCTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
*
126811881 TATAATCCTCCCAAACACACCAGAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
126811909 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
126811937 GCACAAAGTG
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.46, C:0.31, G:0.04, T:0.19
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:126815275 original size:19 final size:19
Alignment explanation
Indices: 126815251--126815313 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
126815241 AAACTTAATT
126815251 ATTTTAATTAATTATAAGG
1 ATTTTAATTAATTATAAGG
* * **
126815270 ATTTTACATAAACT-TAATT
1 ATTTTA-ATTAATTATAAGG
126815289 ATTTTAATTAATTATAAGG
1 ATTTTAATTAATTATAAGG
126815308 ATTTTA
1 ATTTTA
126815314 CTTTACTTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
18 5 0.15
19 24 0.71
20 5 0.15
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.49
Consensus pattern (19 bp):
ATTTTAATTAATTATAAGG
Found at i:126815281 original size:38 final size:38
Alignment explanation
Indices: 126815239--126815314 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
126815229 GGCATGGAAG
126815239 ATAAACTTAATTATTTTAATTAATTATAAGGATTTTAC
1 ATAAACTTAATTATTTTAATTAATTATAAGGATTTTAC
126815277 ATAAACTTAATTATTTTAATTAATTATAAGGATTTTAC
1 ATAAACTTAATTATTTTAATTAATTATAAGGATTTTAC
126815315 TTTACTTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (38 bp):
ATAAACTTAATTATTTTAATTAATTATAAGGATTTTAC
Found at i:126826100 original size:96 final size:96
Alignment explanation
Indices: 126825935--126826280 Score: 442
Period size: 96 Copynumber: 3.6 Consensus size: 96
126825925 TTGGAGTCTG
* * * * * * **
126825935 GGGCTAACTCTAGTATTTGGTGTCTTTCTTGAATCGGGTACATTCTGTATCTTCTCAATGTTTGA
1 GGGCTAACTCTAGTATTTGATGTCTTTCTTGAGTCAGTTGCATCCCATATCTTCTCAATGTTTGA
*
126826000 GTTATCACCATTTGGTAGATTTTGAAACCTT
66 GTTATCACCATTTGGTAGATTTTGGAACCTT
* * * *
126826031 GGGCTAACTCTAGTATTTAACGTCTTTCTTGAGTCAGTTGCATCCCATGTCTTCTCAATGTTTGC
1 GGGCTAACTCTAGTATTTGATGTCTTTCTTGAGTCAGTTGCATCCCATATCTTCTCAATGTTTGA
* *
126826096 GTTATCAACATTTGGTACATTTTGGAACCTT
66 GTTATCACCATTTGGTAGATTTTGGAACCTT
* ** * * * *
126826127 GGGCTAACTCTAGTATTTGATGTCTTTATTGAGAGAGTTGCATCCCTTAAT-TTCTCATTATTGG
1 GGGCTAACTCTAGTATTTGATGTCTTTCTTGAGTCAGTTGCATCCCAT-ATCTTCTCAATGTTTG
*
126826191 AGTTATCACCATTAGGTAGATTTTGGAACCTT
65 AGTTATCACCATTTGGTAGATTTTGGAACCTT
* * *
126826223 GGGCTAACTCTAGTATTTGATTTCTTTCTTGGGTCGGTTGCATCCCATATCTTCTCAA
1 GGGCTAACTCTAGTATTTGATGTCTTTCTTGAGTCAGTTGCATCCCATATCTTCTCAA
126826281 ATTTTGGTAG
Statistics
Matches: 211, Mismatches: 37, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
95 2 0.01
96 208 0.99
97 1 0.00
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.41
Consensus pattern (96 bp):
GGGCTAACTCTAGTATTTGATGTCTTTCTTGAGTCAGTTGCATCCCATATCTTCTCAATGTTTGA
GTTATCACCATTTGGTAGATTTTGGAACCTT
Found at i:126826356 original size:78 final size:78
Alignment explanation
Indices: 126826205--126826357 Score: 211
Period size: 78 Copynumber: 1.9 Consensus size: 78
126826195 ATCACCATTA
*
126826205 GGTAGATTTTGGAACCTTGGGCTAACTCTAGTATTTGATTTCTTTCTTGGGTCGGTTGCATCCCA
1 GGTAGATTTTGGAACCTTGGGCTAACTC-A-TATTTGATGTCTTTCTTGGG-CGGTTGCATCCCA
126826270 TATCTTCTCAAATTTT
63 TATCTTCTCAAATTTT
* *
126826286 GGTAGATTTTGGAACCTTGGGCTAACTC-TATTTGATGTCTTTGTTGAGG-GAGTTGCATCCCTT
1 GGTAGATTTTGGAACCTTGGGCTAACTCATATTTGATGTCTTTCTTG-GGCG-GTTGCATCCCAT
*
126826349 TTCTTCTCA
64 ATCTTCTCA
126826358 TTGTTGGAGT
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
77 1 0.02
78 35 0.53
79 2 0.03
81 28 0.42
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (78 bp):
GGTAGATTTTGGAACCTTGGGCTAACTCATATTTGATGTCTTTCTTGGGCGGTTGCATCCCATAT
CTTCTCAAATTTT
Found at i:126826520 original size:81 final size:81
Alignment explanation
Indices: 126826379--126826534 Score: 199
Period size: 81 Copynumber: 1.9 Consensus size: 81
126826369 ACCACCATTA
* * * *
126826379 GGTAGATTTTGAAACCTTGGGCTAACTCTAGTATTTGATGTTGTTCTTGAGTCGGTTGCATTCCA
1 GGTAGATTTTGAAACCTTGGGCTAACACTAGTATTTGATGTTGTTCTTGAGTAGGCTGCATCCCA
126826444 TATCTTCTCAATATTT
66 TATCTTCTCAATATTT
* * *
126826460 GGTAGATTTTGGAACCTTGGGCTAGCACTAGTATTTGATGTCT-TTGTTGAG-AGAGCTGCATCC
1 GGTAGATTTTGAAACCTTGGGCTAACACTAGTATTTGATGT-TGTTCTTGAGTAG-GCTGCATCC
* *
126826523 CTTTTCTTCTCA
64 CATATCTTCTCA
126826535 TTGTTGGAGT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
80 1 0.02
81 62 0.97
82 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.41
Consensus pattern (81 bp):
GGTAGATTTTGAAACCTTGGGCTAACACTAGTATTTGATGTTGTTCTTGAGTAGGCTGCATCCCA
TATCTTCTCAATATTT
Found at i:126826574 original size:177 final size:177
Alignment explanation
Indices: 126826106--126826683 Score: 889
Period size: 177 Copynumber: 3.3 Consensus size: 177
126826096 GTTATCAACA
* * *
126826106 TTTGGTACATTTTGGAACCTTGGGCTAACTCTAGTATTTGATGTCTTTATTGAGAGAGTTGCATC
1 TTTGGTAGATTTTGGAACCTTGGGCTAACACTAGTATTTGATGTCTTTGTTGAGAGAGTTGCATC
* * * *
126826171 CCTTAAT-TTCTCATTATTGGAGTTATCACCATTAGGTAGATTTTGGAACCTTGGGCTAACTCTA
66 CCTT-TTCTTCTCATTGTTGGAGTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTA
*
126826235 GTATTTGATTTCTTTCTTGGGTCGGTTGCATCCCATATCTTCTCAAAT
130 GTATTTGATTTCTTTCTTGAGTCGGTTGCATCCCATATCTTCTCAAAT
* *
126826283 TTTGGTAGATTTTGGAACCTTGGGCT-A-ACT-CTATTTGATGTCTTTGTTGAGGGAGTTGCATC
1 TTTGGTAGATTTTGGAACCTTGGGCTAACACTAGTATTTGATGTCTTTGTTGAGAGAGTTGCATC
126826345 CCTTTTCTTCTCATTGTTGGAGTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAG
66 CCTTTTCTTCTCATTGTTGGAGTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAG
* *
126826410 TATTTGATGTT-GTTCTTGAGTCGGTTGCATTCCATATCTTCTC-AAT
131 TATTTGAT-TTCTTTCTTGAGTCGGTTGCATCCCATATCTTCTCAAAT
* *
126826456 ATTTGGTAGATTTTGGAACCTTGGGCTAGCACTAGTATTTGATGTCTTTGTTGAGAGAGCTGCAT
1 -TTTGGTAGATTTTGGAACCTTGGGCTAACACTAGTATTTGATGTCTTTGTTGAGAGAGTTGCAT
126826521 CCCTTTTCTTCTCATTGTTGGAGTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTA
65 CCCTTTTCTTCTCATTGTTGGAGTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTA
* * * **
126826586 GTATTTGATTTCTTTCTTGTGTCAGCTGCATCCCGCATCTTCTCAAAT
130 GTATTTGATTTCTTTCTTGAGTCGGTTGCATCCCATATCTTCTCAAAT
* * *
126826634 TTTGGTAGATTTTGGAACCTCGGGCTAACTCTAGTATTTGATATCTTTGT
1 TTTGGTAGATTTTGGAACCTTGGGCTAACACTAGTATTTGATGTCTTTGT
126826684 CGAGTCAGTT
Statistics
Matches: 366, Mismatches: 27, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
173 4 0.01
174 151 0.41
175 4 0.01
176 6 0.02
177 198 0.54
178 3 0.01
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (177 bp):
TTTGGTAGATTTTGGAACCTTGGGCTAACACTAGTATTTGATGTCTTTGTTGAGAGAGTTGCATC
CCTTTTCTTCTCATTGTTGGAGTTACCACCATTAGGTAGATTTTGAAACCTTGGGCTAACTCTAG
TATTTGATTTCTTTCTTGAGTCGGTTGCATCCCATATCTTCTCAAAT
Found at i:126826768 original size:69 final size:69
Alignment explanation
Indices: 126826655--126826791 Score: 195
Period size: 69 Copynumber: 2.0 Consensus size: 69
126826645 TTGGAACCTC
* *
126826655 GGGCTAACTCTAGTATTTGATATCTTTGTCGAGTCAGTTTCATTCCGTATCTTCACAATCTTTGA
1 GGGCTAACTCTAGTATTTGATATCTTTCTCGAGTCAGTTGCATTCCGTATCTTCACAATCTTTGA
126826720 GTTA
66 GTTA
* * * * *
126826724 GGGCTAGCTCTAGTATTTGATTTCTTTC-CTGAGTCAGTTGCATTCCTTATCTTCTCAATGTTTG
1 GGGCTAACTCTAGTATTTGATATCTTTCTC-GAGTCAGTTGCATTCCGTATCTTCACAATCTTTG
126826788 AGTT
65 AGTT
126826792 CCCAACATTT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
68 1 0.02
69 59 0.98
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.44
Consensus pattern (69 bp):
GGGCTAACTCTAGTATTTGATATCTTTCTCGAGTCAGTTGCATTCCGTATCTTCACAATCTTTGA
GTTA
Found at i:126826859 original size:351 final size:339
Alignment explanation
Indices: 126826031--126826926 Score: 849
Period size: 351 Copynumber: 2.6 Consensus size: 339
126826021 TTGAAACCTT
* * * * *
126826031 GGGCTAACTCTAGTATTT-AACGTCTTTCTTGAGTCAGTTGCATCCCATGTCTTCTCAATGTTTG
1 GGGCTAACTCTAGTATTTGAA-ATCTTTCCTGAGTCAGTTGCATTCCTTATCTTCTCAATGTTTG
* * * *
126826095 CGTTATCAACATTTGGTACATTTTGGAACCTTGGGCTAACTCTAGTATTTGATGTCTTTATTGAG
65 AGTTCTCAACATTTGGTAGATTTTGGAACCTTGGGCTAACTCTAGTATTTGATGTCTTTGTTGAG
* * *
126826160 AGAGTTGCATCCCTTAATTTCTCATTATTGGAGTTATCACCATTAGGTAGATTTTGGAACCTTGG
130 AGAGCTGCATCCCTTAATTTCTCATTATTGGAGTTACCACCATTAGGTAGATTTTGAAACCTTGG
* * *
126826225 GCTAACTCTAGTATTTGATTTCTTTCTTGGGTCGGTTGCATCCCATATCTTCTCAAATTTTGGTA
195 GCTAACTCTAGTATTTGATTTCTTTCTTGGGTCAGCTGCATCCCACATCTTCTCAAATTTTGGTA
* * * * * *
126826290 GATTTTGGAACCTTGGGCTAACTCTATTTGATGTCTTTGTTGAGGGAGTTGCATCCCTTTTCTTC
260 GATTTTGGAACCTCGGGCTAACTCTATTTGATATCTTTGTCGAGGCAGTTGCATCCCGTATCTTC
* * *
126826355 TCATTGTTGGAGTTA
325 ACAATCTTGGAGTTA
* * * ** * * *
126826370 ---CCACCAT-TAGGTAGATTTTGAAACCTTGGGCTAACTCTAGTATTTG-ATGTTGTTCTTGAG
1 GGGCTAAC-TCTA-GT--A-TTTGAAATCTT-TCCTGAGTC-AG---TTGCA---T-TCCTT-A-
* * *** * * * *
126826430 TCGGTT-GCATTCCAT-ATCTTCTCAATATTTGGTAGATTTTGGAACCTTGGGCTAGCACTAGTA
50 TC--TTCTCAATGTTTGA-GTTCTCAACATTTGGTAGATTTTGGAACCTTGGGCTAACTCTAGTA
* *
126826493 TTTGATGTCTTTGTTGAGAGAGCTGCATCCCTT-TTCTTCTCATTGTTGGAGTTACCACCATTAG
112 TTTGATGTCTTTGTTGAGAGAGCTGCATCCCTTAAT-TTCTCATTATTGGAGTTACCACCATTAG
* *
126826557 GTAGATTTTGAAACCTTGGGCTAACTCTAGTATTTGATTTCTTTCTTGTGTCAGCTGCATCCCGC
176 GTAGATTTTGAAACCTTGGGCTAACTCTAGTATTTGATTTCTTTCTTGGGTCAGCTGCATCCCAC
126826622 ATCTTCTCAAATTTTGGTAGATTTTGGAACCTCGGGCTAACTCTAGTATTTGATATCTTTGTCGA
241 ATCTTCTCAAATTTTGGTAGATTTTGGAACCTCGGGCTAACTC---TATTTGATATCTTTGTCGA
* * * *
126826687 GTCAGTTTCATTCCGTATCTTCACAATCTTTGAGTTA
303 GGCAGTTGCATCCCGTATCTTCACAATCTTGGAGTTA
* **
126826724 GGGCTAGCTCTAGTATTTGATTTCTTTCCTGAGTCAGTTGCATTCCTTATCTTCTCAATGTTTGA
1 GGGCTAACTCTAGTATTTGAAATCTTTCCTGAGTCAGTTGCATTCCTTATCTTCTCAATGTTTGA
* * * * * * **
126826789 GTTCCCAACATTTAGTAGATTTTGAAACCTTGGGCTAACTCTAGTATTTAATGTTTTTCTTGATT
66 GTTCTCAACATTTGGTAGATTTTGGAACCTTGGGCTAACTCTAGTATTTGATGTCTTTGTTGAGA
** * * * * * * * * *
126826854 TTGTTGCATTCCAT-ATCTTCTCAATGTTCGATTTACCACCGTTTGGTAGATTTTGAAACCTTGG
131 GAGCTGCATCCCTTAAT-TTCTCATTATTGGAGTTACCACCATTAGGTAGATTTTGAAACCTTGG
*
126826918 ACTAACTCT
195 GCTAACTCT
126826927 TCGCTGTATT
Statistics
Matches: 438, Mismatches: 88, Indels: 59
0.75 0.15 0.10
Matches are distributed among these distances:
336 5 0.01
337 3 0.01
339 1 0.00
340 6 0.01
341 8 0.02
342 120 0.27
343 3 0.01
344 2 0.00
345 7 0.02
346 1 0.00
347 1 0.00
348 5 0.01
349 1 0.00
350 3 0.01
351 204 0.47
352 7 0.02
353 8 0.02
354 45 0.10
356 3 0.01
357 5 0.01
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.42
Consensus pattern (339 bp):
GGGCTAACTCTAGTATTTGAAATCTTTCCTGAGTCAGTTGCATTCCTTATCTTCTCAATGTTTGA
GTTCTCAACATTTGGTAGATTTTGGAACCTTGGGCTAACTCTAGTATTTGATGTCTTTGTTGAGA
GAGCTGCATCCCTTAATTTCTCATTATTGGAGTTACCACCATTAGGTAGATTTTGAAACCTTGGG
CTAACTCTAGTATTTGATTTCTTTCTTGGGTCAGCTGCATCCCACATCTTCTCAAATTTTGGTAG
ATTTTGGAACCTCGGGCTAACTCTATTTGATATCTTTGTCGAGGCAGTTGCATCCCGTATCTTCA
CAATCTTGGAGTTA
Found at i:126826860 original size:96 final size:96
Alignment explanation
Indices: 126826724--126826926 Score: 264
Period size: 96 Copynumber: 2.1 Consensus size: 96
126826714 CTTTGAGTTA
* * * *
126826724 GGGCTAGCTCTAGTATTTGATTTCTTTCCTGAGTCAGTTGCATTCCTTATCTTCTCAATGTTTGA
1 GGGCTAACTCTAGTATTTAATTTCTTTCCTGAGTCAGTTGCATTCCATATCTTCTCAATGTTCGA
*
126826789 GTTCCCAACATTTAGTAGATTTTGAAACCTT
66 GTTACCAACATTTAGTAGATTTTGAAACCTT
* * **
126826820 GGGCTAACTCTAGTATTTAATGTT-TTTCTTGATTTTGTTGCATTCCATATCTTCTCAATGTTCG
1 GGGCTAACTCTAGTATTTAAT-TTCTTTCCTGAGTCAGTTGCATTCCATATCTTCTCAATGTTCG
* * * *
126826884 ATTTACCACCGTTTGGTAGATTTTGAAACCTT
65 AGTTACCAACATTTAGTAGATTTTGAAACCTT
*
126826916 GGACTAACTCT
1 GGGCTAACTCT
126826927 TCGCTGTATT
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
96 90 0.98
97 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.16, T:0.43
Consensus pattern (96 bp):
GGGCTAACTCTAGTATTTAATTTCTTTCCTGAGTCAGTTGCATTCCATATCTTCTCAATGTTCGA
GTTACCAACATTTAGTAGATTTTGAAACCTT
Found at i:126828088 original size:11 final size:11
Alignment explanation
Indices: 126828043--126828096 Score: 54
Period size: 11 Copynumber: 4.5 Consensus size: 11
126828033 ATTATACATA
126828043 AATTTTAATTT
1 AATTTTAATTT
*
126828054 AATATATAATATT
1 AAT-TTTAAT-TT
126828067 ATATATTTAATTT
1 A-AT-TTTAATTT
*
126828080 AATTTTAATTC
1 AATTTTAATTT
126828091 AATTTT
1 AATTTT
126828097 CACAATATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
11 16 0.43
12 7 0.19
13 6 0.16
14 8 0.22
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (11 bp):
AATTTTAATTT
Found at i:126836328 original size:7 final size:7
Alignment explanation
Indices: 126836316--126836343 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
126836306 TCCCTTCCTG
126836316 GTGGCGA
1 GTGGCGA
126836323 GTGGCGA
1 GTGGCGA
126836330 GTGGCGA
1 GTGGCGA
126836337 GTGGCGA
1 GTGGCGA
126836344 CTACCTTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.14, G:0.57, T:0.14
Consensus pattern (7 bp):
GTGGCGA
Found at i:126846059 original size:26 final size:24
Alignment explanation
Indices: 126846020--126846078 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
126846010 TTATTTCATT
* *
126846020 AAATAAA-AAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
126846043 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
126846069 AAATAAATAT
1 AAATAAATAT
126846079 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 10 0.32
25 7 0.23
26 14 0.45
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:126846090 original size:22 final size:22
Alignment explanation
Indices: 126846049--126846107 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
126846039 ATAATAAATC
* *
126846049 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
126846069 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
126846091 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
126846108 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:126846410 original size:27 final size:27
Alignment explanation
Indices: 126846366--126846417 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
126846356 ATGATCAGCT
** *
126846366 CTAGTCGAGCCTGTCAGGTAGGCACGA
1 CTAGTCGAGCCTAACAGGCAGGCACGA
*
126846393 CTAGTCGTGCCTAACAGGCAGGCAC
1 CTAGTCGAGCCTAACAGGCAGGCAC
126846418 AACACCCTGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.23, C:0.29, G:0.31, T:0.17
Consensus pattern (27 bp):
CTAGTCGAGCCTAACAGGCAGGCACGA
Found at i:126846898 original size:106 final size:108
Alignment explanation
Indices: 126846762--126846976 Score: 398
Period size: 107 Copynumber: 2.0 Consensus size: 108
126846752 AAAAAACACG
*
126846762 TCAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAA-TTTATTATTT
1 TCAAAAATTTTATCAGAGTAATTAACAAAAACTTTAATACAATTTTGTTAGAAATTTTATTATTT
126846826 AAAACTTATTCTAACTTAACATATCATTGTTTTGTTAAACTAA
66 AAAACTTATTCTAACTTAACATATCATTGTTTTGTTAAACTAA
*
126846869 TCAAAAATTTTAT-AGAGTAATTAACAAAAACTTTAATACAATTTTGTTTGAAATTTTATTATTT
1 TCAAAAATTTTATCAGAGTAATTAACAAAAACTTTAATACAATTTTGTTAGAAATTTTATTATTT
126846933 AAAACTTATTCTAACTTAACATATCATTGTTTTGTTAAACTAA
66 AAAACTTATTCTAACTTAACATATCATTGTTTTGTTAAACTAA
126846976 T
1 T
126846977 TTTTTGTTTA
Statistics
Matches: 105, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
106 38 0.36
107 67 0.64
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (108 bp):
TCAAAAATTTTATCAGAGTAATTAACAAAAACTTTAATACAATTTTGTTAGAAATTTTATTATTT
AAAACTTATTCTAACTTAACATATCATTGTTTTGTTAAACTAA
Found at i:126847227 original size:27 final size:27
Alignment explanation
Indices: 126847189--126847262 Score: 130
Period size: 27 Copynumber: 2.7 Consensus size: 27
126847179 TGTGCAGGGT
126847189 GTTGTGCCTACCTGTCAGGCACGACTA
1 GTTGTGCCTACCTGTCAGGCACGACTA
126847216 GTTGTGCCTACCTGTCAGGCACGACTA
1 GTTGTGCCTACCTGTCAGGCACGACTA
* *
126847243 GTCGTGCCTACCTGACAGGC
1 GTTGTGCCTACCTGTCAGGC
126847263 TTGATCCGTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.18, C:0.31, G:0.27, T:0.24
Consensus pattern (27 bp):
GTTGTGCCTACCTGTCAGGCACGACTA
Found at i:126848803 original size:2 final size:2
Alignment explanation
Indices: 126848798--126848824 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
126848788 ACATAAATAT
126848798 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
126848825 ACGTATTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:126849000 original size:26 final size:29
Alignment explanation
Indices: 126848942--126849001 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 29
126848932 TCTTTTAAAT
* * *
126848942 TTATTTTTATTATTTTAAATGAATATTAT
1 TTATTTTTATTATTATAAATGAATATAAG
126848971 TTATTTTTA-TATTATAAAT-AA-ATAAG
1 TTATTTTTATTATTATAAATGAATATAAG
126848997 TTATT
1 TTATT
126849002 ATAAATAAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 8 0.29
27 2 0.07
28 9 0.32
29 9 0.32
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (29 bp):
TTATTTTTATTATTATAAATGAATATAAG
Found at i:126849003 original size:29 final size:29
Alignment explanation
Indices: 126848940--126848994 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
126848930 AGTCTTTTAA
* *
126848940 ATTTATTTTTATTATTTTAAATGAATATT
1 ATTTATTTTTATTATTATAAATAAATATT
126848969 ATTTATTTTTA-TATTATAAATAAATA
1 ATTTATTTTTATTATTATAAATAAATA
126848995 AGTTATTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (29 bp):
ATTTATTTTTATTATTATAAATAAATATT
Found at i:126855236 original size:18 final size:18
Alignment explanation
Indices: 126855202--126855479 Score: 168
Period size: 18 Copynumber: 15.1 Consensus size: 18
126855192 TCATTAACAA
* *
126855202 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAATTAT
* *
126855219 TCAGTGACAATCACTTAT
1 TCAGTAACAATCAATTAT
*
126855237 TCCGTAACAATCAATTAT
1 TCAGTAACAATCAATTAT
* * *
126855255 TCAATAATAA-CTAGTTAT
1 TCAGTAACAATC-AATTAT
*
126855273 TCAGTATCGATCAATTAATCGGTTAT
1 TCAGTA---A-CAATCAA----TTAT
* *
126855299 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCAATTAT
*
126855317 TTAGTAA-AATCAGA-TAT
1 TCAGTAACAATCA-ATTAT
* *
126855334 TCAGTAGCAATTAAGTTAT
1 TCAGTAACAATCAA-TTAT
* *
126855353 TCAGTAACAGTCATTTAT
1 TCAGTAACAATCAATTAT
* *
126855371 TCAGTGACAATCAGTTAT
1 TCAGTAACAATCAATTAT
**
126855389 TCAGTAATGATCAATTAT
1 TCAGTAACAATCAATTAT
* * *
126855407 TCAGTAATATTCAGTTAT
1 TCAGTAACAATCAATTAT
* *
126855425 TCAGTAACAGTCTATTAT
1 TCAGTAACAATCAATTAT
* *
126855443 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCAATTAT
* *
126855461 TCAGTAATAATCAGTTAT
1 TCAGTAACAATCAATTAT
126855479 T
1 T
126855480 TTATACCTTT
Statistics
Matches: 199, Mismatches: 47, Indels: 29
0.72 0.17 0.11
Matches are distributed among these distances:
17 18 0.09
18 149 0.75
19 13 0.07
21 1 0.01
22 8 0.04
23 1 0.01
26 9 0.05
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (18 bp):
TCAGTAACAATCAATTAT
Found at i:126855709 original size:45 final size:45
Alignment explanation
Indices: 126855652--126855757 Score: 149
Period size: 45 Copynumber: 2.4 Consensus size: 45
126855642 GAACAGTAAT
* **
126855652 AGTAACAGTAACAGTATTTAACACACAAAGTGCTGAATCGATAAC
1 AGTAACAGTAACAGTATTCAACACACAAAGTGCCAAATCGATAAC
* * * *
126855697 GGTAATAGTAACAGTATTCGACACACAAAGTGCCAAATCGGTAAC
1 AGTAACAGTAACAGTATTCAACACACAAAGTGCCAAATCGATAAC
126855742 AGTAACAGTAACAGTA
1 AGTAACAGTAACAGTA
126855758 GTCGGCACAT
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21
Consensus pattern (45 bp):
AGTAACAGTAACAGTATTCAACACACAAAGTGCCAAATCGATAAC
Found at i:126856820 original size:21 final size:21
Alignment explanation
Indices: 126856796--126856835 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
126856786 CCAGTCCCAT
126856796 GCATCAG-ATAATAACAACATG
1 GCATCAGTA-AATAACAACATG
*
126856817 GCATGAGTAAATAACAACA
1 GCATCAGTAAATAACAACA
126856836 GTCAAACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.50, C:0.17, G:0.15, T:0.17
Consensus pattern (21 bp):
GCATCAGTAAATAACAACATG
Found at i:126856884 original size:25 final size:27
Alignment explanation
Indices: 126856847--126856899 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
126856837 TCAAACATGC
126856847 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
126856873 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
126856899 A
1 A
126856900 AAATTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:126858415 original size:32 final size:32
Alignment explanation
Indices: 126858378--126858442 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
126858368 AATGCTTACC
*
126858378 ATGCCCATCGTCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
126858410 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
126858442 A
1 A
126858443 AATGCATACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.37, C:0.25, G:0.08, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:126859292 original size:13 final size:13
Alignment explanation
Indices: 126859272--126859309 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
126859262 CCTTTTCTCC
126859272 CTTT-CTTTCTTT
1 CTTTCCTTTCTTT
126859284 CTTTCCTTTCTTT
1 CTTTCCTTTCTTT
*
126859297 CTCTCCTGTTCTT
1 CTTTCCT-TTCTT
126859310 CTCTGTTTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 4 0.17
13 14 0.61
14 5 0.22
ACGTcount: A:0.00, C:0.32, G:0.03, T:0.66
Consensus pattern (13 bp):
CTTTCCTTTCTTT
Found at i:126859311 original size:13 final size:13
Alignment explanation
Indices: 126859276--126859313 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
126859266 TTCTCCCTTT
*
126859276 CTTTCTTTCTTTC
1 CTTTCTTTCTCTC
126859289 CTTTCTTTCTCTC
1 CTTTCTTTCTCTC
126859302 CTGTTC-TTCTCT
1 CT-TTCTTTCTCT
126859314 GTTTCGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 20 0.87
14 3 0.13
ACGTcount: A:0.00, C:0.34, G:0.03, T:0.63
Consensus pattern (13 bp):
CTTTCTTTCTCTC
Found at i:126859368 original size:17 final size:18
Alignment explanation
Indices: 126859342--126859375 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
126859332 TTTCTTTTTC
126859342 ATTTCTTTTATTTCATTT
1 ATTTCTTTTATTTCATTT
126859360 ATTTC-TTTATTTCATT
1 ATTTCTTTTATTTCATT
126859376 ATTAAACTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.71
Consensus pattern (18 bp):
ATTTCTTTTATTTCATTT
Found at i:126859370 original size:8 final size:9
Alignment explanation
Indices: 126859342--126859375 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
126859332 TTTCTTTTTC
*
126859342 ATTTCTTTT
1 ATTTCATTT
126859351 ATTTCATTT
1 ATTTCATTT
126859360 ATTTC-TTT
1 ATTTCATTT
126859368 ATTTCATT
1 ATTTCATT
126859376 ATTAAACTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.71
Consensus pattern (9 bp):
ATTTCATTT
Found at i:126862887 original size:29 final size:30
Alignment explanation
Indices: 126862840--126862907 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
126862830 TGGCCCAAGA
* *
126862840 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
126862870 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
126862900 GAAAATAT
1 GTAAATAT
126862908 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.49, C:0.04, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:126863184 original size:8 final size:8
Alignment explanation
Indices: 126863171--126863207 Score: 58
Period size: 8 Copynumber: 4.6 Consensus size: 8
126863161 TTTTAAATGA
126863171 TATTTTAT
1 TATTTTAT
126863179 TATTTTAT
1 TATTTTAT
126863187 TATTTTAT
1 TATTTTAT
126863195 TATTATT-T
1 TATT-TTAT
126863203 TATTT
1 TATTT
126863208 AATATATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 1 0.04
8 25 0.89
9 2 0.07
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:126865051 original size:46 final size:46
Alignment explanation
Indices: 126864997--126865421 Score: 469
Period size: 46 Copynumber: 9.0 Consensus size: 46
126864987 GTGTACTCTC
** *
126864997 TGATATGAAATGTGTAAGACCATTGTTGAAAGATACCATGGCAATC-
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAA-CA
* ** *
126865043 TAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAATC-
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAA-CA
* ** * *
126865089 TGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
126865135 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
*** *
126865181 TGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
*
126865227 TGATATGAAATGAATAAGACCATGGTTGAAAGATATGAAAGATACCATGGCATCA
1 TGATATGAAATGAATAAGACCA----TG---G-T-TGAAAGATACCATGGCAACA
*** *
126865282 TGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
*
126865328 TGATATGAAATGAATAAGACTATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * * *
126865374 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
126865420 TG
1 TG
126865422 TCAAAGATAA
Statistics
Matches: 332, Mismatches: 36, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
45 2 0.01
46 285 0.86
47 1 0.00
48 1 0.00
50 2 0.01
51 2 0.01
53 1 0.00
54 1 0.00
55 37 0.11
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.23
Consensus pattern (46 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:126865292 original size:55 final size:55
Alignment explanation
Indices: 126865207--126865316 Score: 175
Period size: 55 Copynumber: 2.0 Consensus size: 55
126865197 AGACCATGGT
* * *
126865207 TGAAAGATACCATGGCAACGTGATATGAAATGAATAAGACCATGGTTGAAAGATA
1 TGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGATA
* *
126865262 TGAAAGATACCATGGCATCATGACGGGAAATGAATAAGACCATGGTTGAAAGATA
1 TGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGATA
126865317 CCATGGCAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 50 1.00
ACGTcount: A:0.43, C:0.12, G:0.25, T:0.21
Consensus pattern (55 bp):
TGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGATA
Found at i:126865336 original size:101 final size:101
Alignment explanation
Indices: 126865161--126865362 Score: 386
Period size: 101 Copynumber: 2.0 Consensus size: 101
126865151 AGACCATGGT
126865161 TGAAAGATACCATGGCAACATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 TGAAAGATACCATGGCAACATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
126865226 GTGATATGAAATGAATAAGACCATGGTTGAAAGATA
66 GTGATATGAAATGAATAAGACCATGGTTGAAAGATA
*
126865262 TGAAAGATACCATGGCATCATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 TGAAAGATACCATGGCAACATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
*
126865327 GTGATATGAAATGAATAAGACTATGGTTGAAAGATA
66 GTGATATGAAATGAATAAGACCATGGTTGAAAGATA
126865363 CCATGGCAAC
Statistics
Matches: 99, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
101 99 1.00
ACGTcount: A:0.42, C:0.12, G:0.25, T:0.21
Consensus pattern (101 bp):
TGAAAGATACCATGGCAACATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
GTGATATGAAATGAATAAGACCATGGTTGAAAGATA
Found at i:126865385 original size:147 final size:147
Alignment explanation
Indices: 126865141--126865406 Score: 435
Period size: 147 Copynumber: 1.8 Consensus size: 147
126865131 AACGTGATAT
*
126865141 GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAATAAGACCATGG
1 GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGG
* * *
126865206 TTGAAAGATACCATGGCAACGTGATATGAAATGAATAAGACCATGGTTGAAAGATATGAAAGATA
66 TTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATAGTTGAAAGATATGAAAGATA
126865271 CCATGGCATCATGACGG
131 CCATGGCATCATGACGG
* * * *
126865288 GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAATAAGACTATGG
1 GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGG
*
126865353 TTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
66 TTGAAAGATACCATGGCAACATGACATG-AAATGAATAAGACCATAGTTGAAAGA
126865407 CACTATGGCA
Statistics
Matches: 109, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
146 1 0.01
147 108 0.99
ACGTcount: A:0.43, C:0.13, G:0.24, T:0.20
Consensus pattern (147 bp):
GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGG
TTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATAGTTGAAAGATATGAAAGATA
CCATGGCATCATGACGG
Found at i:126865723 original size:16 final size:17
Alignment explanation
Indices: 126865702--126865734 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
126865692 ATGATGGAGC
126865702 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
126865718 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
126865735 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:126865915 original size:43 final size:43
Alignment explanation
Indices: 126865868--126866009 Score: 203
Period size: 43 Copynumber: 3.3 Consensus size: 43
126865858 TATTTTTAAA
* * *
126865868 AAACGCCGCTAAAGGTCATGGCCTTTACCGACGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTCTCAC
126865911 AAACGCCGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTCTCAC
1 AAACGCCGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTCTCAC
* * * * *
126865954 AAACGCTGCTAAAAGTCGTGACCTTTAGCGGTGCTTTTCTCAC
1 AAACGCCGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTCTCAC
*
126865997 AAACGCCACTAAA
1 AAACGCCGCTAAA
126866010 AGCCTTGAAA
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 89 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTCTCAC
Found at i:126866075 original size:17 final size:20
Alignment explanation
Indices: 126866040--126866075 Score: 51
Period size: 17 Copynumber: 1.9 Consensus size: 20
126866030 ATATATTATA
126866040 AAAATATTATAAATGTCATG
1 AAAATATTATAAATGTCATG
126866060 AAAA-ATTA-AAAT-TCAT
1 AAAATATTATAAATGTCAT
126866076 TATCAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 3
0.84 0.00 0.16
Matches are distributed among these distances:
17 4 0.25
18 4 0.25
19 4 0.25
20 4 0.25
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.33
Consensus pattern (20 bp):
AAAATATTATAAATGTCATG
Found at i:126866324 original size:19 final size:19
Alignment explanation
Indices: 126866279--126866325 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
126866269 TAAATATTAA
*
126866279 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
126866298 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
126866317 AATAAAAAT
1 AATAAAAAT
126866326 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:126871256 original size:7 final size:7
Alignment explanation
Indices: 126871244--126871371 Score: 66
Period size: 7 Copynumber: 18.0 Consensus size: 7
126871234 CTAATTAATT
126871244 TAAACCC
1 TAAACCC
126871251 TAAACCTC
1 TAAACC-C
*
126871259 TTAACCCC
1 -TAAACCC
*
126871267 T-ATCCC
1 TAAACCC
*
126871273 ATAAACAC
1 -TAAACCC
126871281 TAAACCC
1 TAAACCC
*
126871288 TAAACCT
1 TAAACCC
*
126871295 TTAACCC
1 TAAACCC
*
126871302 TTAACCC
1 TAAACCC
*
126871309 CAAACCC
1 TAAACCC
* *
126871316 TTACACCT
1 -TAAACCC
126871324 TAAACTCC
1 TAAAC-CC
126871332 --AACCC
1 TAAACCC
126871337 T-AACCC
1 TAAACCC
126871343 TTAAACCC
1 -TAAACCC
* *
126871351 TAAATCA
1 TAAACCC
*
126871358 TAATCCC
1 TAAACCC
126871365 TAAACCC
1 TAAACCC
126871372 ATAATTCATC
Statistics
Matches: 91, Mismatches: 21, Indels: 18
0.70 0.16 0.14
Matches are distributed among these distances:
5 2 0.02
6 12 0.13
7 57 0.63
8 15 0.16
9 5 0.05
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.22
Consensus pattern (7 bp):
TAAACCC
Found at i:126871417 original size:7 final size:7
Alignment explanation
Indices: 126871407--126871455 Score: 53
Period size: 7 Copynumber: 7.0 Consensus size: 7
126871397 CTAGTTAACT
126871407 CTTAAAC
1 CTTAAAC
126871414 CTTAAAC
1 CTTAAAC
*
126871421 CCTAAAC
1 CTTAAAC
* * *
126871428 CATATAT
1 CTTAAAC
126871435 CTTAAAC
1 CTTAAAC
*
126871442 CATAAAC
1 CTTAAAC
126871449 CTTAAAC
1 CTTAAAC
126871456 TATAATGATA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.27
Consensus pattern (7 bp):
CTTAAAC
Found at i:126871426 original size:14 final size:14
Alignment explanation
Indices: 126871407--126871460 Score: 63
Period size: 14 Copynumber: 3.9 Consensus size: 14
126871397 CTAGTTAACT
*
126871407 CTTAAACCTTAAAC
1 CTTAAACCATAAAC
* * *
126871421 CCTAAACCATATAT
1 CTTAAACCATAAAC
126871435 CTTAAACCATAAAC
1 CTTAAACCATAAAC
*
126871449 CTTAAACTATAA
1 CTTAAACCATAA
126871461 TGATAATTAA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.28
Consensus pattern (14 bp):
CTTAAACCATAAAC
Found at i:126871673 original size:41 final size:41
Alignment explanation
Indices: 126871616--126871742 Score: 177
Period size: 41 Copynumber: 3.1 Consensus size: 41
126871606 GTTATATGAC
126871616 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
126871657 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-AT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
126871697 TTTTAGTGGCGTTTTTTACTAAAA-CGCCGCTATTGCTCTGTGT
1 TTTTAGCGGCG--TTTTACCAAAAGCGCCGCTAATGCTCTG-GT
126871740 TTT
1 TTT
126871743 ACAATTTTTG
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
40 11 0.14
41 52 0.68
42 10 0.13
43 4 0.05
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Done.