Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 42 of 438
Found at i:10544815 original size:9 final size:9
Alignment explanation
Indices: 10544803--10544898 Score: 54
Period size: 9 Copynumber: 10.6 Consensus size: 9
10544793 TCTTTTATGA
10544803 ATTTTATAT
1 ATTTTATAT
10544812 ATTTT-TAT
1 ATTTTATAT
*
10544820 ATTTTTTAT
1 ATTTTATAT
* *
10544829 -TTTTTTACG
1 ATTTTATA-T
** *
10544838 GCTTTATAAA
1 ATTTTAT-AT
10544848 ATTTTATAAT
1 ATTTTAT-AT
* *
10544858 TTTTTCTAT
1 ATTTTATAT
10544867 ATTTCTATAT
1 ATTT-TATAT
*
10544877 ATTTTTTAT
1 ATTTTATAT
10544886 ATTTTATA-
1 ATTTTATAT
10544894 ATTTT
1 ATTTT
10544899 TAATAAATTT
Statistics
Matches: 69, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
8 20 0.29
9 24 0.35
10 24 0.35
11 1 0.01
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (9 bp):
ATTTTATAT
Found at i:10544833 original size:8 final size:9
Alignment explanation
Indices: 10544804--10544920 Score: 51
Period size: 9 Copynumber: 12.7 Consensus size: 9
10544794 CTTTTATGAA
10544804 TTTTATATAT
1 TTTTATAT-T
10544814 TTTTATATT
1 TTTTATATT
10544823 TTTTAT-TT
1 TTTTATATT
***
10544831 TTTTA-CGG
1 TTTTATATT
* **
10544839 CTTTATAAAA
1 TTTTAT-ATT
10544849 TTTTATAATTT
1 TTTTAT-A-TT
10544860 TTTCTATATT
1 TTT-TATATT
*
10544870 TCTATATATT
1 T-TTTATATT
10544880 TTTTATATT
1 TTTTATATT
*
10544889 TTATA-ATT
1 TTTTATATT
* **
10544897 TTTAATAAA
1 TTTTATATT
*
10544906 TTTTAAATT
1 TTTTATATT
10544915 TTTTAT
1 TTTTAT
10544921 TAAAATTTAA
Statistics
Matches: 79, Mismatches: 21, Indels: 15
0.69 0.18 0.13
Matches are distributed among these distances:
8 17 0.22
9 29 0.37
10 25 0.32
11 5 0.06
12 3 0.04
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (9 bp):
TTTTATATT
Found at i:10544909 original size:10 final size:10
Alignment explanation
Indices: 10544886--10544948 Score: 51
Period size: 10 Copynumber: 6.6 Consensus size: 10
10544876 TATTTTTTAT
10544886 ATTTT-ATAA
1 ATTTTAATAA
*
10544895 TTTTTAATAA
1 ATTTTAATAA
*
10544905 ATTTTAA-AT
1 ATTTTAATAA
* *
10544914 TTTTTATTAA
1 ATTTTAATAA
*
10544924 AATTTAATAA
1 ATTTTAATAA
10544934 ATTTT-ATAA
1 ATTTTAATAA
*
10544943 CTTTTA
1 ATTTTA
10544949 TTGATTTTTA
Statistics
Matches: 40, Mismatches: 11, Indels: 5
0.71 0.20 0.09
Matches are distributed among these distances:
9 18 0.45
10 22 0.55
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (10 bp):
ATTTTAATAA
Found at i:10544924 original size:19 final size:19
Alignment explanation
Indices: 10544840--10544930 Score: 62
Period size: 19 Copynumber: 4.8 Consensus size: 19
10544830 TTTTTACGGC
*
10544840 TTTATAAAATTTTATAATTT
1 TTTATTAAATTTTA-AATTT
* * * *
10544860 TTT-CTATATTTCTATATAT
1 TTTATTAAATTT-TAAATTT
*
10544879 TTT-TTATATTTTATAA-TT
1 TTTATTAAATTTTA-AATTT
*
10544897 TTTAATAAATTTTAAATTT
1 TTTATTAAATTTTAAATTT
*
10544916 TTTATTAAAATTTAA
1 TTTATTAAATTTTAA
10544931 TAAATTTTAT
Statistics
Matches: 55, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
18 8 0.15
19 42 0.76
20 5 0.09
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTATTAAATTTTAAATTT
Found at i:10544958 original size:29 final size:29
Alignment explanation
Indices: 10544887--10544958 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
10544877 ATTTTTTATA
*
10544887 TTTTA-TAATTTTTAATAAATTTTAAATT
1 TTTTATTAATTTTTAATAAATTTTAAATC
**
10544915 TTTTATTAAAATTTAATAAATTTTATAA-C
1 TTTTATTAATTTTTAATAAATTTTA-AATC
*
10544944 TTTTATTGATTTTTA
1 TTTTATTAATTTTTA
10544959 TTTTTTTATC
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
28 5 0.14
29 29 0.81
30 2 0.06
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (29 bp):
TTTTATTAATTTTTAATAAATTTTAAATC
Found at i:10545404 original size:6 final size:6
Alignment explanation
Indices: 10545393--10545418 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
10545383 TGAAGATTAA
10545393 TTAATT TTAATT TTAATT TTAATT TT
1 TTAATT TTAATT TTAATT TTAATT TT
10545419 TTGAATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTAATT
Found at i:10552412 original size:19 final size:19
Alignment explanation
Indices: 10552388--10552436 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
10552378 TTCAAGGATC
* *
10552388 AATTTTTAAAAAAATATAA
1 AATTTTGAAAAAAATAGAA
* *
10552407 AATTTTGGAAAAACTAGAA
1 AATTTTGAAAAAAATAGAA
10552426 AATTTTGAAAA
1 AATTTTGAAAA
10552437 TAAGGGTCAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.57, C:0.02, G:0.08, T:0.33
Consensus pattern (19 bp):
AATTTTGAAAAAAATAGAA
Found at i:10561822 original size:16 final size:16
Alignment explanation
Indices: 10561801--10561838 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
10561791 TTGCATAACA
10561801 TTTTCAATC-AAAACCC
1 TTTTCAATCGAAAA-CC
*
10561817 TTTTCAATCGATAACC
1 TTTTCAATCGAAAACC
10561833 TTTTCA
1 TTTTCA
10561839 TCATTTTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 17 0.85
17 3 0.15
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.39
Consensus pattern (16 bp):
TTTTCAATCGAAAACC
Found at i:10563900 original size:22 final size:21
Alignment explanation
Indices: 10563859--10563900 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
10563849 ACCACCATTT
*
10563859 TTTCTATTTCCATCGTGTCTA
1 TTTCTATTTCCATCATGTCTA
10563880 TTTCTATCTTCC-TCATAGTCT
1 TTTCTAT-TTCCATCAT-GTCT
10563901 CCCCCACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.14, C:0.26, G:0.07, T:0.52
Consensus pattern (21 bp):
TTTCTATTTCCATCATGTCTA
Found at i:10567513 original size:2 final size:2
Alignment explanation
Indices: 10567506--10567531 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10567496 ATTTTAACCA
10567506 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
10567532 TCCTCAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10575179 original size:5 final size:5
Alignment explanation
Indices: 10575165--10575202 Score: 67
Period size: 5 Copynumber: 7.4 Consensus size: 5
10575155 TCTTTAGTTT
10575165 ATATA TATATA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA -ATATA ATATA ATATA ATATA ATATA ATATA AT
10575203 TAAAACATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 27 0.84
6 5 0.16
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:10584393 original size:34 final size:34
Alignment explanation
Indices: 10584320--10584404 Score: 82
Period size: 34 Copynumber: 2.4 Consensus size: 34
10584310 GCTCCCCATA
**
10584320 TTATTTTTTAATTTTAAAAAAATATATTTATATT
1 TTATTTTTTAATTTTAAAAAAATATATACATATT
* * * *
10584354 ATATTTTTTAATATTT-AATAATTATATACATTTT
1 TTATTTTTTAAT-TTTAAAAAAATATATACATATT
10584388 TTATTTATTTGAATTTT
1 TTATTT-TTT-AATTTT
10584405 TTATATAATC
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
34 29 0.71
35 9 0.22
36 3 0.07
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.61
Consensus pattern (34 bp):
TTATTTTTTAATTTTAAAAAAATATATACATATT
Found at i:10586195 original size:19 final size:20
Alignment explanation
Indices: 10586171--10586209 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
10586161 AATGTATATA
*
10586171 AATATATCAAATTA-AAATT
1 AATATATAAAATTACAAATT
10586190 AATATATAAAATTACAAATT
1 AATATATAAAATTACAAATT
10586210 GTATCAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (20 bp):
AATATATAAAATTACAAATT
Found at i:10587708 original size:20 final size:19
Alignment explanation
Indices: 10587667--10587708 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
10587657 TTTAAAAAAA
*
10587667 TATAAATTTTATAATTTTT
1 TATAAATTTTATAATTTGT
10587686 TATAAATATTT-TGAATTTGT
1 TATAAAT-TTTAT-AATTTGT
10587706 TAT
1 TAT
10587709 GTGATTTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (19 bp):
TATAAATTTTATAATTTGT
Found at i:10590638 original size:34 final size:34
Alignment explanation
Indices: 10590595--10590663 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
10590585 TATTTCAAAA
*
10590595 AACACAATGCTTAGATTATTCAGCAAGATATGAT
1 AACACAATGCTTAGATTATTCAGCAAAATATGAT
10590629 AACACAATGCTTAGATTATTCAGCAAAATATGAT
1 AACACAATGCTTAGATTATTCAGCAAAATATGAT
10590663 A
1 A
10590664 GTTTTTTTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.43, C:0.14, G:0.13, T:0.29
Consensus pattern (34 bp):
AACACAATGCTTAGATTATTCAGCAAAATATGAT
Found at i:10591313 original size:4 final size:4
Alignment explanation
Indices: 10591306--10591337 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
10591296 AATAAAATAA
*
10591306 AAAG AAAG ACAG AAAG AAAG AAAG AAAG AAAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
10591338 CAAGTCAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.72, C:0.03, G:0.25, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:10592012 original size:5 final size:5
Alignment explanation
Indices: 10592004--10592029 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
10591994 AAAATTTGAT
10592004 TTTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC TTTTC TTTTC TTTTC TTTTC T
10592030 GGGTATTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:10595131 original size:19 final size:22
Alignment explanation
Indices: 10595100--10595147 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 22
10595090 TAAATTTTAC
*
10595100 AATTTTT-ATAAA-TATTTTG-
1 AATTTTTGATAAATTATATTGT
10595119 AATTTTTGA-AAATTATATTGT
1 AATTTTTGATAAATTATATTGT
10595140 AATTTTTG
1 AATTTTTG
10595148 TTAAGAGAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 10 0.40
20 7 0.28
21 8 0.32
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.56
Consensus pattern (22 bp):
AATTTTTGATAAATTATATTGT
Found at i:10596316 original size:17 final size:17
Alignment explanation
Indices: 10596296--10596328 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10596286 CTTAAATTAA
*
10596296 TAAATTAATTTCTCAAT
1 TAAATAAATTTCTCAAT
10596313 TAAATAAATTTCTCAA
1 TAAATAAATTTCTCAA
10596329 CTCAATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (17 bp):
TAAATAAATTTCTCAAT
Found at i:10598816 original size:46 final size:46
Alignment explanation
Indices: 10598688--10598898 Score: 230
Period size: 46 Copynumber: 4.5 Consensus size: 46
10598678 ATGCAAATGC
* * * *
10598688 CATGTCCCAGACATGGTCTTACACTGACTCTCACATATCCG-TGCCGATG
1 CATGTCCTAGACAT-GTCTTACACTGGCT-T-ACAT-TTCGAAGCCGATG
* * * * *
10598737 CCGTGTCCCAGACATGGTCTTACACTGAC--ACATTTTGTAGCCGATG
1 -CATGTCCTAGACAT-GTCTTACACTGGCTTACATTTCGAAGCCGATG
*
10598783 CATGTCCTAGACATGTCTTACATTGGCTTACATTTCGAAGCCGATG
1 CATGTCCTAGACATGTCTTACACTGGCTTACATTTCGAAGCCGATG
*
10598829 CATGTCTTAGACATGTCTTACACTGGCTTACATTTCGAAGCCGATG
1 CATGTCCTAGACATGTCTTACACTGGCTTACATTTCGAAGCCGATG
* *
10598875 CATGTCTTAGACATGTTTTACACT
1 CATGTCCTAGACATGTCTTACACT
10598899 AGCATACAAT
Statistics
Matches: 145, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 93 0.64
50 27 0.19
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (46 bp):
CATGTCCTAGACATGTCTTACACTGGCTTACATTTCGAAGCCGATG
Found at i:10599610 original size:13 final size:13
Alignment explanation
Indices: 10599592--10599616 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10599582 CTAAAATTGC
10599592 AAAAATCATCAAG
1 AAAAATCATCAAG
10599605 AAAAATCATCAA
1 AAAAATCATCAA
10599617 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:10606419 original size:46 final size:48
Alignment explanation
Indices: 10606170--10606485 Score: 243
Period size: 46 Copynumber: 6.8 Consensus size: 48
10606160 CATAGGGTAT
* *
10606170 AATGCCAATGCCATGTCCCAGACATGGTCTTACATTGGCTCATC-TATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATATC
* * *
10606218 AA-GTCGATGCCATGTCCCAGACATGGTCTTTCACTGACTCTCACATATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT--CATATC
** * * *
10606267 CGTGCCGATGCCATGTCCCAGACATGGTCTTACACT-GAT-ACATTTTGC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-TAT-C
** *
10606315 -A-GCCGATG-CATGTAACAGACAT-GTCTTACACTGGCT-TACATCTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATATC
* * * *
10606359 GA-GACCGATG-CATGTCCCAGACAT-GTATTACACTAGCTCT-TTATC
1 AATG-CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC
* *
10606404 AATGCCGATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCGTA--
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC
* *
10606450 ATGTGGCCAATG-CATGTCCCAGACAT-GTCTTACACT
1 A-AT-GCCGATGCCATGTCCCAGACATGGTCTTACACT
10606486 AGTACACAAT
Statistics
Matches: 219, Mismatches: 32, Indels: 36
0.76 0.11 0.13
Matches are distributed among these distances:
44 11 0.05
45 28 0.13
46 67 0.31
47 65 0.30
48 12 0.05
49 5 0.02
50 31 0.14
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC
Found at i:10608064 original size:22 final size:21
Alignment explanation
Indices: 10608038--10608081 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
10608028 TTCACCCGTT
10608038 AGGCTTCAGTGTCGCGACACCC
1 AGGCTTCAGTGTCGCGAC-CCC
**
10608060 AGGCTTTGGTGTCGCGACCCC
1 AGGCTTCAGTGTCGCGACCCC
10608081 A
1 A
10608082 CGACAGTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.16, C:0.34, G:0.30, T:0.20
Consensus pattern (21 bp):
AGGCTTCAGTGTCGCGACCCC
Found at i:10611613 original size:48 final size:47
Alignment explanation
Indices: 10611544--10611672 Score: 197
Period size: 48 Copynumber: 2.7 Consensus size: 47
10611534 GTGCGAGCGA
10611544 TACCTTGATTTGGCTATGGGCCATGGTATAGGTATTTCGGAGA-AGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTATTTCGG-GATA-AGT
* *
10611592 TACCTTGATTTAGCTACGGGCCATGGTATAGGTATTTCGGGATAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTATTTCGGGATAAGT
* *
10611639 TACATAGATTTGGCTATGGGCCATGGTATAGGTA
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTA
10611673 CTTATCGATT
Statistics
Matches: 74, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
47 35 0.47
48 39 0.53
ACGTcount: A:0.24, C:0.13, G:0.29, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTATTTCGGGATAAGT
Found at i:10611660 original size:47 final size:48
Alignment explanation
Indices: 10611550--10611672 Score: 187
Period size: 47 Copynumber: 2.6 Consensus size: 48
10611540 GCGATACCTT
* *
10611550 GATTTGGCTATGGGCCATGGTATAGGTATTTCGGAGAAGAGTTACCTT
1 GATTTGGCTATGGGCCATGGTATAGGTATTTCGGAGAAGAGTTACATA
* *
10611598 GATTTAGCTACGGGCCATGGTATAGGTATTTCGG-GATA-AGTTACATA
1 GATTTGGCTATGGGCCATGGTATAGGTATTTCGGAGA-AGAGTTACATA
10611645 GATTTGGCTATGGGCCATGGTATAGGTA
1 GATTTGGCTATGGGCCATGGTATAGGTA
10611673 CTTATCGATT
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
47 35 0.51
48 33 0.49
ACGTcount: A:0.24, C:0.12, G:0.31, T:0.33
Consensus pattern (48 bp):
GATTTGGCTATGGGCCATGGTATAGGTATTTCGGAGAAGAGTTACATA
Found at i:10616110 original size:22 final size:22
Alignment explanation
Indices: 10616085--10616126 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
10616075 GAATGGTATT
10616085 TGAA-TATGAATGCATAAATGTA
1 TGAATTATGAATG-ATAAATGTA
*
10616107 TGAATTATGTATGATAAATG
1 TGAATTATGAATGATAAATG
10616127 AGGTGTATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.43, C:0.02, G:0.19, T:0.36
Consensus pattern (22 bp):
TGAATTATGAATGATAAATGTA
Found at i:10619467 original size:104 final size:104
Alignment explanation
Indices: 10619286--10619490 Score: 302
Period size: 104 Copynumber: 2.0 Consensus size: 104
10619276 CTGTCTGTTT
* * * *
10619286 TTGTCCCCTCAAATAGTCCAGATTGCACATGTTATTTCCTTGTACTTATCCTTAGAATGCACAAA
1 TTGTCCCCGCAAATAGCCCAGATTGCACATGTTATTTACTTGCACTTATCCTTAGAATGCACAAA
10619351 GAACAACCAGTCCATCCACTGTCTGTATCTCTCATTCAA
66 GAACAACCAGTCCATCCACTGTCTGTATCTCTCATTCAA
* * *
10619390 TTGTCCCCGCAAATAGCCCAGATTGCACATGTTATTTATTTGCACTTATCCTTAGACTGCATAAA
1 TTGTCCCCGCAAATAGCCCAGATTGCACATGTTATTTACTTGCACTTATCCTTAGAATGCACAAA
* * * * *
10619455 GAATAGCTAGTCCATCCATTGTTTGTATCTCTCATT
66 GAACAACCAGTCCATCCACTGTCTGTATCTCTCATT
10619491 AAACTAATTT
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
104 89 1.00
ACGTcount: A:0.27, C:0.26, G:0.13, T:0.35
Consensus pattern (104 bp):
TTGTCCCCGCAAATAGCCCAGATTGCACATGTTATTTACTTGCACTTATCCTTAGAATGCACAAA
GAACAACCAGTCCATCCACTGTCTGTATCTCTCATTCAA
Found at i:10624609 original size:23 final size:23
Alignment explanation
Indices: 10624541--10624611 Score: 87
Period size: 21 Copynumber: 3.3 Consensus size: 23
10624531 CCTGATCAGT
** *
10624541 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACGAGGTGCCTGAA
10624563 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACGAGGTGCCTGAA
10624583 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTGAA
10624606 ATACGA
1 ATACGA
10624612 TACATAAAGT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
20 1 0.02
21 34 0.81
22 1 0.02
23 6 0.14
ACGTcount: A:0.38, C:0.25, G:0.23, T:0.14
Consensus pattern (23 bp):
ATACGACACACGAGGTGCCTGAA
Found at i:10624623 original size:23 final size:23
Alignment explanation
Indices: 10624541--10624627 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
10624531 CCTGATCAGT
*
10624541 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
10624563 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
10624583 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
* *
10624606 ATACGATACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
10624628 TCGATAAAGC
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.63
22 1 0.02
23 18 0.33
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.16
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:10628847 original size:26 final size:26
Alignment explanation
Indices: 10628811--10628920 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
10628801 TGATACAAAT
10628811 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
10628837 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
10628863 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
10628889 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
10628915 TGATAA
1 TGATAA
10628921 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:10632514 original size:2 final size:2
Alignment explanation
Indices: 10632507--10632536 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10632497 ATTTAAAAGA
10632507 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10632537 GATAAATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10632637 original size:16 final size:16
Alignment explanation
Indices: 10632618--10632667 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
10632608 TATCATAAAT
*
10632618 TATATGTATAATAACA
1 TATATATATAATAACA
* *
10632634 TATATATATAAGAATA
1 TATATATATAATAACA
* *
10632650 TTTAAATATAATAACA
1 TATATATATAATAACA
10632666 TA
1 TA
10632668 CAAAATAAGA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (16 bp):
TATATATATAATAACA
Found at i:10633200 original size:34 final size:33
Alignment explanation
Indices: 10633162--10633226 Score: 76
Period size: 34 Copynumber: 1.9 Consensus size: 33
10633152 TAAAACTTGC
*
10633162 TTTAAATATCATTTTTTTGCTTTAAAGAAAACAT
1 TTTAAATATCATTTTTTT-CTTTAAAAAAAACAT
* * * *
10633196 TTTAACTTTGATTTTTTTTTTTAAAAAAAAC
1 TTTAAATATCATTTTTTTCTTTAAAAAAAAC
10633227 CCTAAAGTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
33 11 0.42
34 15 0.58
ACGTcount: A:0.37, C:0.08, G:0.05, T:0.51
Consensus pattern (33 bp):
TTTAAATATCATTTTTTTCTTTAAAAAAAACAT
Found at i:10634358 original size:45 final size:45
Alignment explanation
Indices: 10634274--10634360 Score: 104
Period size: 45 Copynumber: 1.9 Consensus size: 45
10634264 CTAAAATCTG
* * *
10634274 CTCCACAGCCGATACATGGAGATAATACTCTCCATTTTCAGTTTA
1 CTCCACAGCCGATACATGGAGATAAGACTCTCAACTTTCAGTTTA
* * *
10634319 CTCCATAGTCGATACATGGAGATAAGA-TCTGTAACTTTCAGT
1 CTCCACAGCCGATACATGGAGATAAGACTCT-CAACTTTCAGT
10634361 CTGCTTCTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
44 3 0.09
45 32 0.91
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (45 bp):
CTCCACAGCCGATACATGGAGATAAGACTCTCAACTTTCAGTTTA
Found at i:10634396 original size:178 final size:176
Alignment explanation
Indices: 10634092--10634535 Score: 589
Period size: 178 Copynumber: 2.5 Consensus size: 176
10634082 AAGGTCAGTG
* *
10634092 GCTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTT--TTT-T-C-T-GTTC
1 GCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCTCCATTTTCGTTTCTCCATAG-TC
* * *
10634151 CATACATGGAGATAAGATCTGTAACTTTCAATTTGCTTCCTTGCTACCTCAGGAAGACAATACTT
65 GATACATGGAGATAAGATCTGTAACTTTCAATCTGCTTCCTTGCTACCTCAGGAAGACAAGACTT
*
10634216 GTATCTCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTA
130 GTATCTCCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTA
* *
10634263 GCTAAAATCTGCTCCACAGCCGATACATGGAGATAATACTCTCCATTTTCAGTTTACTCCATAGT
1 GCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCTCCATTTTC-GTTT-CTCCATAGT
* * * *
10634328 CGATACATGGAGATAAGATCTGTAACTTTCAGTCTGCTTCTTTGCTACCTGAGGAAGATAAGACT
64 CGATACATGGAGATAAGATCTGTAACTTTCAATCTGCTTCCTTGCTACCTCAGGAAGACAAGACT
* *
10634393 TGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTG
129 TGTATCTCCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTA
* * * * *
10634441 GCTAAAATTTGCTCCATAGCCGATACATAGAGATAAGA-TTTGCCATCTTCGATCTGCTCCATAG
1 GCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCT-CCATTTTCG-T-TTCTCCATAG
* *
10634505 CCGATACATGGAGATAAGATCTGCAA-TTTCA
63 TCGATACATGGAGATAAGATCTGTAACTTTCA
10634536 CTGATGTCGC
Statistics
Matches: 239, Mismatches: 23, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
171 45 0.19
174 3 0.01
176 1 0.00
177 9 0.04
178 179 0.75
179 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (176 bp):
GCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCTCCATTTTCGTTTCTCCATAGTCG
ATACATGGAGATAAGATCTGTAACTTTCAATCTGCTTCCTTGCTACCTCAGGAAGACAAGACTTG
TATCTCCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTA
Found at i:10639196 original size:21 final size:21
Alignment explanation
Indices: 10639171--10639214 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
10639161 GAAATGCAAG
*
10639171 AAAAGAAAATTTGCTCAAGAT
1 AAAAGAAAATTTGCTCAAAAT
*
10639192 AAAAGAATATTTGCTCAAAAT
1 AAAAGAAAATTTGCTCAAAAT
10639213 AA
1 AA
10639215 GACATAAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.55, C:0.09, G:0.11, T:0.25
Consensus pattern (21 bp):
AAAAGAAAATTTGCTCAAAAT
Found at i:10646048 original size:100 final size:99
Alignment explanation
Indices: 10645875--10646073 Score: 371
Period size: 100 Copynumber: 2.0 Consensus size: 99
10645865 AAGTGTGTGC
* *
10645875 ACAACTCGAGTTGGATTTTAGGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCACGTT
1 ACAACTCAAGTTGGATTTTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCACGTT
10645940 AGGACACGATATTTTAAGCCTCCAAAAAACTGAGA
66 AGGACACGATATTTTAAGCCTCC-AAAAACTGAGA
10645975 ACAACTCAAGTTGGATTTTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCACGTT
1 ACAACTCAAGTTGGATTTTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCACGTT
10646040 AGGACACGATATTTTAAGCCTCCAAAAACTGAGA
66 AGGACACGATATTTTAAGCCTCCAAAAACTGAGA
10646074 TCACCACATG
Statistics
Matches: 97, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
99 11 0.11
100 86 0.89
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (99 bp):
ACAACTCAAGTTGGATTTTAAGATTCACTCGTTCCAAAGGAATAAAATACCACATCCAGCACGTT
AGGACACGATATTTTAAGCCTCCAAAAACTGAGA
Found at i:10646753 original size:2 final size:2
Alignment explanation
Indices: 10646748--10646773 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10646738 AAAAAAAAAA
10646748 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
10646774 GATAAATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10648090 original size:3 final size:3
Alignment explanation
Indices: 10648082--10648158 Score: 77
Period size: 3 Copynumber: 26.0 Consensus size: 3
10648072 ATAAAAGATG
* * * * * *
10648082 ATA ATA ATA ATA ATG ATA ATA ATA AT- GTA GTA CCT- ATG ATA CTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
10648126 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10648159 CTATTATTGA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
2 2 0.03
3 60 0.95
4 1 0.02
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:10648427 original size:14 final size:14
Alignment explanation
Indices: 10648385--10648428 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
10648375 AACAACTATA
10648385 AGTATATACATAAAT
1 AGTATATACAT-AAT
*
10648400 AGATATATA-GTAAT
1 AG-TATATACATAAT
10648414 AGTATATACATAAT
1 AGTATATACATAAT
10648428 A
1 A
10648429 TAGTTATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 6 0.24
14 10 0.40
15 3 0.12
16 6 0.24
ACGTcount: A:0.52, C:0.05, G:0.09, T:0.34
Consensus pattern (14 bp):
AGTATATACATAAT
Found at i:10648457 original size:26 final size:25
Alignment explanation
Indices: 10648384--10648473 Score: 83
Period size: 26 Copynumber: 3.4 Consensus size: 25
10648374 AAACAACTAT
10648384 AAGTATATACATAA-ATAGATATATAGTA
1 AAGTATATACATAAGATAG-TATA-A--A
* *
10648412 ATAGTATATACATAATATAGTTATTAA
1 A-AGTATATACATAAGATAG-TATAAA
*
10648439 AAGTATATACGTAAGATAGTATAAA
1 AAGTATATACATAAGATAGTATAAA
10648464 AATGTATATA
1 AA-GTATATA
10648474 ATATAGTATC
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
25 7 0.13
26 23 0.43
27 2 0.04
28 1 0.02
29 14 0.26
30 7 0.13
ACGTcount: A:0.51, C:0.03, G:0.11, T:0.34
Consensus pattern (25 bp):
AAGTATATACATAAGATAGTATAAA
Found at i:10650564 original size:43 final size:43
Alignment explanation
Indices: 10650466--10650622 Score: 154
Period size: 43 Copynumber: 3.6 Consensus size: 43
10650456 AACTTCAGCT
* * *** *
10650466 TGTTACCCTACTACTTAGGGGGTTAA-AGCTCGTTGCCTTCGATC
1 TGTTACCCTACTGCTTAGGGGGTTAAGATCT-G-TAAATTCGACC
*
10650510 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCGACC
1 TGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCGACC
* * * * ***
10650553 TGTTACCCTACTGCTTAGGGGTTTAAGGTCTATAAATTTGGGT
1 TGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCGACC
*
10650596 TGCTACCCTACTGCTTAGGGGGTTAAG
1 TGTTACCCTACTGCTTAGGGGGTTAAG
10650623 GCCTGTGAAT
Statistics
Matches: 95, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
43 67 0.71
44 25 0.26
45 3 0.03
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (43 bp):
TGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCGACC
Found at i:10660051 original size:48 final size:48
Alignment explanation
Indices: 10659990--10660633 Score: 1006
Period size: 48 Copynumber: 13.3 Consensus size: 48
10659980 ATATACACAC
* * *
10659990 ATCTCCTATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
10660038 ATCTCATGCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
10660086 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
*
10660136 TTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
*
10660186 TTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
10660234 ATCTCAT-CTATATTTCACAGTAGCCATTCGGCTTTGCCACATATACAT
1 ATCTCATAC-ATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
10660282 ATCTCATATATTTTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
10660330 ATCTCATACTTATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
* *
10660380 TTCTCATACATATTTCACATTAGCCATTCGGCTTTACCATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
10660428 ATCTCAT-CTATATTTCACAGTAGCCATTCGGCTTTGCCACATATACAT
1 ATCTCATAC-ATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
10660476 ATCTCATATAT-TTTCACAGTAGCCATTCGGCTTTACCACATATACCT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
10660523 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
10660571 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
10660619 ATCTCATATATATTT
1 ATCTCATACATATTT
10660634 ATCTTGTACA
Statistics
Matches: 556, Mismatches: 31, Indels: 18
0.92 0.05 0.03
Matches are distributed among these distances:
47 46 0.08
48 368 0.66
50 142 0.26
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:10666755 original size:3 final size:3
Alignment explanation
Indices: 10666740--10666783 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
10666730 TGTAGTACCT
* *
10666740 ATA ATA CTA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TTA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
10666784 GACATTATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:10667044 original size:14 final size:14
Alignment explanation
Indices: 10667002--10667045 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
10666992 AACAACTATA
10667002 AGTATATACATAAAT
1 AGTATATACAT-AAT
*
10667017 AGATATATA-GTAAT
1 AG-TATATACATAAT
10667031 AGTATATACATAAT
1 AGTATATACATAAT
10667045 A
1 A
10667046 TAGTTATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 6 0.24
14 10 0.40
15 3 0.12
16 6 0.24
ACGTcount: A:0.52, C:0.05, G:0.09, T:0.34
Consensus pattern (14 bp):
AGTATATACATAAT
Found at i:10667074 original size:26 final size:25
Alignment explanation
Indices: 10667001--10667090 Score: 74
Period size: 26 Copynumber: 3.4 Consensus size: 25
10666991 AAACAACTAT
10667001 AAGTATATACATAA-ATAGATATATAGTA
1 AAGTATATACATAAGATAG-TATA-A--A
* *
10667029 ATAGTATATACATAATATAGTTATTAA
1 A-AGTATATACATAAGATAG-TATAAA
**
10667056 AAGTATATATGTAAGATAGTATAAA
1 AAGTATATACATAAGATAGTATAAA
10667081 AATGTATATA
1 AA-GTATATA
10667091 ATATAGTATC
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
25 7 0.13
26 22 0.42
27 2 0.04
28 1 0.02
29 14 0.26
30 7 0.13
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (25 bp):
AAGTATATACATAAGATAGTATAAA
Found at i:10669196 original size:13 final size:13
Alignment explanation
Indices: 10669178--10669202 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10669168 AACTTGGCTT
10669178 GTATTTTGGGCCA
1 GTATTTTGGGCCA
10669191 GTATTTTGGGCC
1 GTATTTTGGGCC
10669203 GGGTTTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.16, G:0.32, T:0.40
Consensus pattern (13 bp):
GTATTTTGGGCCA
Found at i:10670633 original size:2 final size:2
Alignment explanation
Indices: 10670626--10670655 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10670616 ACCATCACAA
10670626 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10670656 TTGAAACCGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10671357 original size:4 final size:4
Alignment explanation
Indices: 10671350--10671382 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
10671340 TTTCTTCTTC
10671350 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
10671383 AATAACACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:10677616 original size:19 final size:18
Alignment explanation
Indices: 10677576--10677635 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 18
10677566 GTATGAACTC
* * *
10677576 TTTTTTTAGTTTTGAATT
1 TTTTTTTAATTTTAAATA
10677594 TTTTTTTAATTTTCAAATA
1 TTTTTTTAATTTT-AAATA
*
10677613 TTTTTATAATTTTTAAATTA
1 TTTTTTTAA-TTTTAAA-TA
10677633 TTT
1 TTT
10677636 GTTGATATGA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
18 12 0.34
19 14 0.40
20 9 0.26
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTTTTTAATTTTAAATA
Found at i:10677811 original size:4 final size:4
Alignment explanation
Indices: 10677802--10677826 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
10677792 AAATAAAAGC
10677802 TAAA TAAA TAAA TAAA TAAA TAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA T
10677827 GTTAAAACCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:10679122 original size:10 final size:10
Alignment explanation
Indices: 10679090--10679132 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
10679080 TACATATATT
*
10679090 AAAACATAAA
1 AAAAAATAAA
*
10679100 AGAAAATACAA
1 AAAAAATA-AA
10679111 AAAAAATAAA
1 AAAAAATAAA
*
10679121 AAAATATAAA
1 AAAAAATAAA
10679131 AA
1 AA
10679133 TATAAATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
10 19 0.68
11 9 0.32
ACGTcount: A:0.81, C:0.05, G:0.02, T:0.12
Consensus pattern (10 bp):
AAAAAATAAA
Found at i:10679242 original size:11 final size:11
Alignment explanation
Indices: 10679228--10679262 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
10679218 TCCCCTTCCC
10679228 CTCCCTTCTCT
1 CTCCCTTCTCT
10679239 CTCCCTTCTCT
1 CTCCCTTCTCT
10679250 CTTCCC-TCTCT
1 C-TCCCTTCTCT
10679261 CT
1 CT
10679263 TCTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:10679746 original size:3 final size:3
Alignment explanation
Indices: 10679738--10679795 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
10679728 TGTATTTCAA
10679738 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
10679786 TAT TAT TAT T
1 TAT TAT TAT T
10679796 GTACATTAGT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:10679910 original size:124 final size:125
Alignment explanation
Indices: 10679771--10680002 Score: 310
Period size: 124 Copynumber: 1.9 Consensus size: 125
10679761 TTATTATTAT
* * * * *
10679771 TATTATTATTATTATTATTATTATTGTACATTAGTGTATA-TCTTCATGT-ATGTATATATATAT
1 TATTATTATTATTATTATTATCATT-AACATTACTATATATTCTT-AT-TAATGTATATATACAT
* * *
10679834 GTAGTAATGTTTTT-ATTACTTTATTTTAATAT-TTTTTATTATAATAGCTTTTGTATTTCAA
63 ATAGTAATGTTTTTAATGACTTTATTTTAATATCATTTTATTATAATAGCTTTTGTATTTCAA
10679895 TATTATTATTATTATTATTATCATTAACATTACTATATATTCTTATTAGATGTATATATACATAT
1 TATTATTATTATTATTATTATCATTAACATTACTATATATTCTTATTA-ATGTATATATACATAT
* *
10679960 ATTACTGTTTTTAATGACTTTATTTTAATATCATTTTATTATA
65 AGTAATGTTTTTAATGACTTTATTTTAATATCATTTTATTATA
10680003 TTTACTTTTT
Statistics
Matches: 93, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
122 1 0.01
123 13 0.14
124 52 0.56
125 17 0.18
126 10 0.11
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (125 bp):
TATTATTATTATTATTATTATCATTAACATTACTATATATTCTTATTAATGTATATATACATATA
GTAATGTTTTTAATGACTTTATTTTAATATCATTTTATTATAATAGCTTTTGTATTTCAA
Found at i:10680220 original size:2 final size:2
Alignment explanation
Indices: 10680213--10680248 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
10680203 TACTGTTATT
*
10680213 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10680249 AGTATGTGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10680332 original size:11 final size:11
Alignment explanation
Indices: 10680316--10680342 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
10680306 GTACGTATTG
10680316 TATATGTTCTA
1 TATATGTTCTA
10680327 TATATGTTCTA
1 TATATGTTCTA
10680338 TATAT
1 TATAT
10680343 TTTTAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (11 bp):
TATATGTTCTA
Found at i:10693044 original size:75 final size:75
Alignment explanation
Indices: 10692937--10693150 Score: 329
Period size: 75 Copynumber: 2.9 Consensus size: 75
10692927 TATGTTTTCC
* * * *
10692937 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGTACGCTGAGGTATTTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTA
* **
10693002 TGTTTTTCAA
66 TGCTGGTCAA
* * *
10693012 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTA
10693077 TGCTGGTCAA
66 TGCTGGTCAA
*
10693087 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCGATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
10693151 CTTGCTTTCC
Statistics
Matches: 125, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
75 125 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTA
TGCTGGTCAA
Found at i:10693448 original size:73 final size:72
Alignment explanation
Indices: 10693266--10693569 Score: 270
Period size: 72 Copynumber: 4.0 Consensus size: 72
10693256 GTTTTTTTTT
* * * ** ** *
10693266 AAATCAACTTATAATTGCGAAAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTGACCTCC
1 AAATCAACTCAT-ATCGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
10693331 GTTTTCGA
65 GTTTTCAA
*
10693339 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
10693404 TTTGTCAA
66 TTT-TCAA
* * *
10693412 AAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAGCTCACATGCTGAGGTCTTTTCAATTTT
1 AAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGG-----T-AA----
*
10693477 TTTTTAATTTCTGTTTTTCAA
54 -TTTCAATTTCTG-TTTTCAA
* *
10693498 AAAAATCAACTCATA-CTGCGAGAGGTAAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATCT
1 AA--ATCAACTCATATC-GCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT-T
10693562 T-TGTTTTC
62 TCTGTTTTC
10693570 TCCAATTTAT
Statistics
Matches: 195, Mismatches: 17, Indels: 37
0.78 0.07 0.15
Matches are distributed among these distances:
72 50 0.26
73 50 0.26
74 5 0.03
75 18 0.09
76 2 0.01
80 3 0.02
81 3 0.02
86 28 0.14
87 4 0.02
88 32 0.16
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (72 bp):
AAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
TTTTCAA
Found at i:10693505 original size:161 final size:158
Alignment explanation
Indices: 10693338--10693885 Score: 448
Period size: 161 Copynumber: 3.4 Consensus size: 158
10693328 TCCGTTTTCG
*
10693338 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
** * *
10693403 GTTTGTCAAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAGCTCACATGCTGAGGTCTT
66 GTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA-GCTGAGGTATT
10693468 TTCAATTTTTTTTTAATTTCTGTTTTTCAAA
129 TTCAATTTTTTTTTAATTT-TGTTTTTCAAA
* *
10693499 AAAATCAACTCATACTGCGAGAGGTAAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATCTTT
1 AAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA-----
* * *
10693564 GTTTTCTCCAATTTATGTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTAAGCCTCAGGG
61 ---TT-T-C------TG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
* * *
10693629 CAC-GCTGAGGTATTCTCGATTTCTGTTTTTCAATTTATG--TTTC-CA
114 CACAGCTGAGGTATTTTCAATTT-T-TTTTT-AATTT-TGTTTTTCAAA
* *** * * * * * * *
10693674 AAAATCAATTCATAGCACTAAAGGTGAA-TTAAGCCTCGGGTCACATAGC-AAGGTATTTTCAAT
1 AAAATCAACTCATATTGCGAGAGGT-AAGTTGAGCCTCAGG--ACA-CGCTGAGGTAATTTCAAT
* *
10693737 TTATG-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGT
62 TTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA-GCTGAGGT
*
10693801 GTTTTCAA------TTT-A---TGTTTTTCAAA
126 ATTTTCAATTTTTTTTTAATTTTGTTTTTCAAA
*
10693824 AAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTC-GGAGCACGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGA-CACGCTGAGGTAATTTCAATT
10693886 AATGTTTTTT
Statistics
Matches: 312, Mismatches: 43, Indels: 77
0.72 0.10 0.18
Matches are distributed among these distances:
147 5 0.02
148 16 0.05
149 8 0.03
150 28 0.09
151 1 0.00
153 3 0.01
159 45 0.14
161 72 0.23
168 1 0.00
169 4 0.01
170 1 0.00
171 1 0.00
175 46 0.15
176 7 0.02
177 62 0.20
178 12 0.04
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (158 bp):
AAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAGCTGAGGTATTTT
CAATTTTTTTTTAATTTTGTTTTTCAAA
Found at i:10693609 original size:89 final size:85
Alignment explanation
Indices: 10693392--10693687 Score: 328
Period size: 89 Copynumber: 3.4 Consensus size: 85
10693382 GCTGAGGTAA
* * ** *
10693392 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAGCTCACAT
1 TTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACAT
*
10693457 GCTGAGGTCTTTTCAATTTT-TT
64 GCTGAGGT-ATTTCAATTTTGTT
* * *
10693479 TTT-AATTTCTGTTTTTCAAAAAAATCAACTCATACTGCGAGAGGTAAGTTGAGCCTCAGGACAT
1 TTTCAATTTATGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAT
10693543 GCTGAGGTAATTTCAATCTTTGTT
64 GCTGAGGT-ATTTCAAT-TTTGTT
* * * *
10693567 TTCTCCAATTTATGTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCAC
1 TT-T-CAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAT
*
10693632 GCTGAGGTATTCTCGATTTCTGTT
64 GCTGAGGTATT-TCAATTT-TGTT
* *
10693656 TTTCAATTTATG-TTTCCAAAAATCAATTCATA
1 TTTCAATTTATGTTTTTCAAAAATCAACTCATA
10693688 GCACTAAAGG
Statistics
Matches: 181, Mismatches: 19, Indels: 19
0.83 0.09 0.09
Matches are distributed among these distances:
86 49 0.27
87 15 0.08
88 46 0.25
89 58 0.32
91 13 0.07
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (85 bp):
TTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGC
TGAGGTATTTCAATTTTGTT
Found at i:10693706 original size:86 final size:89
Alignment explanation
Indices: 10693395--10693710 Score: 226
Period size: 86 Copynumber: 3.6 Consensus size: 89
10693385 GAGGTAATTT
* * * * * * *
10693395 CAATTTCTGTTTGT-CAAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAGCTCACATGC
1 CAATTTATGTTT-TCCAAAAATCAACTCATAGCACGAAAGGTGAATTAAGCCTCAG--GACACGC
**
10693459 TGAGGTCTTTTCAAT-TTT-TTTT-T-
63 TGAGGTAATTTCAATCTTTGTTTTCTC
* * * * * *
10693482 -AATTTCTGTTTTTCAAAAAAATCAACTCATA-CTGCGAGAGGT-AAGTTGAGCCTCAGGACATG
1 CAATTTATG-TTTTC-CAAAAATCAACTCATAGC-ACGAAAGGTGAA-TTAAGCCTCAGGACACG
10693544 CTGAGGTAATTTCAATCTTTGTTTTCTC
62 CTGAGGTAATTTCAATCTTTGTTTTCTC
* * *** * * *
10693572 CAATTTATGTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCACGCTGA
1 CAATTTATGTTTTCCAAAAATCAACTCATAGCACGAAAGGTGAATTAAGCCTCAGGACACGCTGA
*
10693637 GGT-ATTCTCGAT-TTCTGTTTT-T-
66 GGTAATT-TCAATCTT-TGTTTTCTC
* *
10693659 CAATTTATG-TTTCCAAAAATCAATTCATAGCACTAAAGGTGAATTAAGCCTC
1 CAATTTATGTTTTCCAAAAATCAACTCATAGCACGAAAGGTGAATTAAGCCTC
10693711 GGGTCACATA
Statistics
Matches: 190, Mismatches: 25, Indels: 29
0.78 0.10 0.12
Matches are distributed among these distances:
86 62 0.33
87 17 0.09
88 44 0.23
89 55 0.29
90 5 0.03
91 7 0.04
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (89 bp):
CAATTTATGTTTTCCAAAAATCAACTCATAGCACGAAAGGTGAATTAAGCCTCAGGACACGCTGA
GGTAATTTCAATCTTTGTTTTCTC
Found at i:10693795 original size:411 final size:406
Alignment explanation
Indices: 10692922--10694071 Score: 1120
Period size: 411 Copynumber: 2.8 Consensus size: 406
10692912 CTGTTTTCTA
*
10692922 CAATTTATGTTTTCCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGT--ACGCT
1 CAATTTATGTTTT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGTACACGCT
*
10692985 GAGGTATTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
64 GAGGTATTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * * *
10693050 AGGACATGCTGAGGTAATTTCAA------TTT-ATGCTG--GTCAAAAAAATCAACTCATATTGC
128 AGCACATGCTGAGGTATTTTCAATTTTTTTTTAATTCTGTTTTCAAAAAAATCAACTCATATTGC
* * * * *
10693106 GAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCGATTTCTTG-CTTTCCAATTTCTGC
193 GAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCAATAT-TTGTTTTTCCAATTT-TG-
* * * *
10693170 CTTTCAAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGTCACTT
255 TTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGCGCACG-GCTGAGTCACTT
* * * **** *** * *
10693235 TCAATTTCTGTTTTTATGTTTGTTTTTTTTTAAATCAACTTATAATTGCGAAAGGTGAGTTGAGC
318 TCAATTTCTGTTTTTATATTTATGTTTCCAAAAATCAACTTATAAGCACGAAAGGTGAATTAAGC
* *
10693300 CTCAGGACACGCTGAGGTAATTTT
383 CTCAGGACAAGCTAAGGTAATTTT
* ** ** * *
10693324 -GACCTCCGTTTTCGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGA
1 CAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTACACGCTGA
* * **
10693387 GGTAATTTCAATTTCTGTTTGTC-AAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAGC
66 GGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-
* *
10693451 TCACATGCTGAGGTCTTTTCAATTTTTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATACTG
130 -CACATGCTGAGGTATTTTCAATTTTTTTTTAA-TTCTG-TTTTCAAAAAAATCAACTCATATTG
* * *
10693516 CGAGAGGTAAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATCTTTGTTTTCTCCAATTTATG
192 CGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCAATATTTGTTTT-TCCAATTT-TG
* *
10693581 TTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTAAGCCTCAGG-GCAC-GCTGAGGT-A-T
255 -TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGCGCACGGCTGA-GTCACT
* *
10693642 TCTCGATTTCTGTTTTTCA-ATTTATGTTTCCAAAAATCAA-TTCAT-AGCACTAAAGGTGAATT
317 T-TCAATTTCTGTTTTT-ATATTTATGTTTCCAAAAATCAACTT-ATAAGCACGAAAGGTGAATT
*
10693704 AAGCCTCGGGTCACATAGC-AAGGT-ATTTT
379 AAGCCTCAGG--ACA-AGCTAAGGTAATTTT
10693733 CAATTTATG-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTG
1 CAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT-ACACGCTG
* * *
10693797 AGGTGTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCG
65 AGGTATTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-
*
10693862 GAGCAC--GCTGAGGTATTTTCAATTAATGTTTTTTCAATTCATGCTTTTC--AAGAATCAACTC
128 -AGCACATGCTGAGGTATTTTCAATT--T-TTTTTT-AATTC-TG-TTTTCAAAAAAATCAACTC
* ** * * * * * * *
10693923 ATATTACGAGAAATGAGTTGAGCCTCGGGTCACATACCGAGGTATTTTCAAAATCTGTTTTACAA
186 ATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACATGCTGAGGTATTTTCAATATTTGTTTTTCCA
* * ** *
10693988 ATTTTGTTTT-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTTACGTGCTAAG-
249 ATTTTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGCGCACG-GCTGAGT
*
10694051 CTATTTTCAATTTCTGTTTTT
313 C-ACTTTCAATTTCTGTTTTT
10694072 GATTTCTGTT
Statistics
Matches: 613, Mismatches: 90, Indels: 79
0.78 0.12 0.10
Matches are distributed among these distances:
398 38 0.06
399 2 0.00
400 82 0.13
401 7 0.01
406 3 0.00
407 1 0.00
408 28 0.05
409 84 0.14
410 18 0.03
411 183 0.30
412 21 0.03
413 94 0.15
414 17 0.03
415 35 0.06
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (406 bp):
CAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTACACGCTGA
GGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGC
ACATGCTGAGGTATTTTCAATTTTTTTTTAATTCTGTTTTCAAAAAAATCAACTCATATTGCGAG
AGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCAATATTTGTTTTTCCAATTTTGTTTTCA
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGCGCACGGCTGAGTCACTTTCAATTTC
TGTTTTTATATTTATGTTTCCAAAAATCAACTTATAAGCACGAAAGGTGAATTAAGCCTCAGGAC
AAGCTAAGGTAATTTT
Found at i:10693854 original size:77 final size:75
Alignment explanation
Indices: 10693655--10693894 Score: 262
Period size: 73 Copynumber: 3.2 Consensus size: 75
10693645 CGATTTCTGT
* * *** * * *
10693655 TTTTCAATTTATG-TTTCCAAAAATCAATTCATAGCACTAAAGGTGAA-TTAAGCCTCGGGTCAC
1 TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGT-AAGTTGAGCCTCGGGTCAC
* *
10693718 ATAGC-AAGGTA
65 A-CGCTGAGGTA
*
10693729 TTTTCAATTTATG--TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
1 TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGGTCACA
*
10693792 CGCTGAGGTG
66 CGCTGAGGTA
10693802 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTC-GG--A
1 TTTTCAATTTATGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGGTCA
10693864 GCACGCTGAGGTA
64 -CACGCTGAGGTA
*
10693877 TTTTCAATTAATGTTTTT
1 TTTTCAATTTATGTTTTT
10693895 TCAATTCATG
Statistics
Matches: 144, Mismatches: 15, Indels: 13
0.84 0.09 0.08
Matches are distributed among these distances:
72 3 0.02
73 56 0.39
74 14 0.10
75 32 0.22
76 2 0.01
77 37 0.26
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (75 bp):
TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGGTCACA
CGCTGAGGTA
Found at i:10693882 original size:75 final size:73
Alignment explanation
Indices: 10693724--10693894 Score: 249
Period size: 77 Copynumber: 2.3 Consensus size: 73
10693714 TCACATAGCA
*
10693724 AGGTATTTTCAATTTATG--TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
1 AGGTATTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGG
10693787 TCACACGCTG
66 --ACACGCTG
*
10693797 AGGTGTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTC-
1 AGGTATTTTCAATTTATGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCG
10693861 GGAGCACGCTG
64 GGA-CACGCTG
*
10693872 AGGTATTTTCAATTAATGTTTTT
1 AGGTATTTTCAATTTATGTTTTT
10693895 TCAATTCATG
Statistics
Matches: 89, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
73 17 0.19
74 1 0.01
75 32 0.36
76 2 0.02
77 37 0.42
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (73 bp):
AGGTATTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGG
ACACGCTG
Found at i:10693982 original size:90 final size:84
Alignment explanation
Indices: 10693802--10694034 Score: 238
Period size: 88 Copynumber: 2.6 Consensus size: 84
10693792 CGCTGAGGTG
* *
10693802 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGAGCA
1 TTTTCAA-TTATG-TTTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGAGCA
* *
10693867 CGCTGAGGTATTTTCAATTAATGTT
62 CACCGAGGTATTTTCAA-TAATG-T
* * *
10693892 TTTTCAATTCATGCTTTTCAAGAATCAACTCATATTACGAGAAATGAGTTGAGCCTCGG-GTCAC
1 TTTTCAATT-ATG-TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGAG-CAC
10693956 ATACCGAGGTATTTTCAA-AATCTGT
63 --ACCGAGGTATTTTCAATAA--TGT
* *
10693981 TTTACAAATTTTGTTTT-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 TTTTC-AATTATGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
10694035 TGGCTTACGT
Statistics
Matches: 123, Mismatches: 13, Indels: 17
0.80 0.08 0.11
Matches are distributed among these distances:
87 35 0.28
88 44 0.36
89 9 0.07
90 35 0.28
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.36
Consensus pattern (84 bp):
TTTTCAATTATGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGAGCACACC
GAGGTATTTTCAATAATGT
Found at i:10694004 original size:325 final size:330
Alignment explanation
Indices: 10693386--10694012 Score: 781
Period size: 325 Copynumber: 1.9 Consensus size: 330
10693376 GGACACGCTG
*
10693386 AGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAGC
1 AGGTAATTTCAATTTATGTTTGTCAAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAGC
*
10693451 TCACATGCTGAGGTCTTTTCAATTTTTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATACTG
66 TCACACGCTGAGGTCTTTTCAA-----TTTTAA--T-TGTTTTTCAAAAAAATCAACTCATACTG
* * *
10693516 CGAGAGGTAAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATCTTTGTTTTCTCCAATTTATG
123 CGAGAGGTAAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATCTATGTTTTCTCCAATTCATG
* * * ** * *
10693581 TTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCACGCTGAGGTATTCTC
188 CTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTAAGCCTCAGGGCACACCGAGGTATTCTC
* ** * *
10693646 GATTTCTGTTTTTCAATTTATGTTTCCAAAAATCAATTCATAGCACTAAAGGTGAATTAAGCCTC
253 AAAATCTGTTTTACAATTTATGTTTCCAAAAATCAACTCATAGCACTAAAGGTGAATTAAGCCTC
10693711 GGGTCACATAGCA
318 GGGTCACATAGCA
* ** * *
10693724 AGGTATTTTCAATTTATG-TT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
1 AGGTAATTTCAATTTATGTTTGTCAAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAGC
* *
10693787 TCACACGCTGAGGTGTTTTCAA-TTT-A-TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGT
66 TCACACGCTGAGGTCTTTTCAATTTTAATTGTTTTTCAAAAAAATCAACTCATACTGCGAGAGGT
* *
10693849 AAGTTGAGCCTC-GGAGCACGCTGAGGTATTTTCAAT-TAATGTTTT-TTCAATTCATGCTTTTC
131 AAGTTGAGCCTCAGGA-CACGCTGAGGTAATTTCAATCT-ATGTTTTCTCCAATTCATGCTTTTC
* * *
10693911 AAGAATCAACTCATATTACGAGAAATGAGTTGAGCCTC-GGGTCACATACCGAGGTATTTTCAAA
194 AAAAATCAACTCATATTACGAGAAATGAGTTAAGCCTCAGGG-CAC--ACCGAGGTATTCTCAAA
*
10693975 ATCTGTTTTACAAATTT-TGTTT-TAAAAATCAACTCATA
256 ATCTGTTTTAC-AATTTATGTTTCCAAAAATCAACTCATA
10694013 TTGCGAGAAG
Statistics
Matches: 253, Mismatches: 30, Indels: 25
0.82 0.10 0.08
Matches are distributed among these distances:
323 3 0.01
324 53 0.21
325 85 0.34
326 26 0.10
327 5 0.02
329 1 0.00
330 3 0.01
336 59 0.23
337 2 0.01
338 16 0.06
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35
Consensus pattern (330 bp):
AGGTAATTTCAATTTATGTTTGTCAAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAGC
TCACACGCTGAGGTCTTTTCAATTTTAATTGTTTTTCAAAAAAATCAACTCATACTGCGAGAGGT
AAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATCTATGTTTTCTCCAATTCATGCTTTTCAA
AAATCAACTCATATTACGAGAAATGAGTTAAGCCTCAGGGCACACCGAGGTATTCTCAAAATCTG
TTTTACAATTTATGTTTCCAAAAATCAACTCATAGCACTAAAGGTGAATTAAGCCTCGGGTCACA
TAGCA
Found at i:10694020 original size:87 final size:86
Alignment explanation
Indices: 10693800--10694137 Score: 254
Period size: 87 Copynumber: 3.8 Consensus size: 86
10693790 CACGCTGAGG
* ** *
10693800 TGTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGAG
1 TGTTTTCAATTT-TGCTTTT---AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGG-G
* * *
10693865 -CAC--GCTGAGGTATTTTCAATTAATG
61 TCACATACCGAGGTATTTTCAA--AATC
* * * *
10693890 TTTTTTCAATTCATGCTTTTCAAGAATCAACTCATATTACGAGAAATGAGTTGAGCCTCGGGTCA
1 TGTTTTCAATT-TTGCTTTT-AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGTCA
10693955 CATACCGAGGTATTTTCAAAATC
64 CATACCGAGGTATTTTCAAAATC
* * * *
10693978 TGTTTTACAAATTTTG-TTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTTA
1 TGTTTT-C-AATTTTGCTTTTAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGTCA
* * ** * **
10694042 CGTGCTAAGCTATTTTCAATTTC
64 CATACCGAGGTATTTTCAAAATC
** * * * * *
10694065 TGTTTTTGATTTCTGTTTTTAAAAGTCAATTCATATTGCGAAAAATGAGTTGAG-CTCAGGATCA
1 TGTTTTCAATTT-TGCTTTTAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-GGGTCA
*
10694129 CACACCGAG
64 CATACCGAG
10694138 TAAAGAATAA
Statistics
Matches: 198, Mismatches: 41, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
85 4 0.02
86 4 0.02
87 103 0.52
88 50 0.25
89 3 0.02
90 34 0.17
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (86 bp):
TGTTTTCAATTTTGCTTTTAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGTCACA
TACCGAGGTATTTTCAAAATC
Found at i:10694058 original size:325 final size:326
Alignment explanation
Indices: 10693338--10694069 Score: 779
Period size: 325 Copynumber: 2.2 Consensus size: 326
10693328 TCCGTTTTCG
* * *
10693338 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC-AC-GCTGAGGTAATTTCAATTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-AGG-CTACTGCTAAGGTATTTTCAATTT
*
10693401 CTGTTTGTCAAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAGCTCACATGCTGAGGTC
64 CTG-TT-TCAAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTC
10693466 TTTTCAATTTTTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATACTGCGAGAGGTAAGTTGA
127 TTTTCAA-----TTTTAA--T-TGTTTTTCAAAAAAATCAACTCATACTGCGAGAGGTAAGTTGA
* * * * *
10693531 GCCTCAGGACATGCTGAGGTAATTTCAATCTTTGTTTTCTCCAATTTATGTTTTTCAAAAATCAG
184 GCCTCAGGACACGCTGAGGTAATTTCAATCTATGTTTTCTCCAATTCATGCTTTTCAAAAATCAA
* ** * * * ** *
10693596 CTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCACGCTGAGGTATTCTCGATTTCTGTTTTTCA
249 CTCATATTACGAGAAATGAGTTAAGCCTCAGGGCACACCGAGGTATTCTCAAAATCTGTTTTACA
10693661 ATTTATGTTTCCA
314 ATTTATGTTTCCA
* *** * * * * *
10693674 AAAATCAATTCATAGCACTA-AAGGTGAATTAAGCCTCGGGTCACATAGC-AAGGTATTTTCAAT
1 AAAATCAACTCATATTGCGAGAA-GTGAGTTGAGCCTAGGCT-AC-T-GCTAAGGTATTTTCAAT
* ** * * *
10693737 TTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTG
62 TTCTGTTTCAAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTC
*
10693802 TTTTCAA-TTT-A-TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTC-GG
127 TTTTCAATTTTAATTGTTTTTCAAAAAAATCAACTCATACTGCGAGAGGTAAGTTGAGCCTCAGG
* * *
10693863 AGCACGCTGAGGTATTTTCAAT-TAATGTTTT-TTCAATTCATGCTTTTCAAGAATCAACTCATA
192 A-CACGCTGAGGTAATTTCAATCT-ATGTTTTCTCCAATTCATGCTTTTCAAAAATCAACTCATA
* *
10693926 TTACGAGAAATGAGTTGAGCCTC-GGGTCACATACCGAGGTATTTTCAAAATCTGTTTTACAAAT
255 TTACGAGAAATGAGTTAAGCCTCAGGG-CAC--ACCGAGGTATTCTCAAAATCTGTTTTAC-AAT
*
10693990 TT-TGTTT-TA
316 TTATGTTTCCA
* *
10693999 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTTACGTGCTAAGCTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTAGGC-TAC-TGCTAAGGTATTTTCAATTT
10694064 CTGTTT
64 CTGTTT
10694070 TTGATTTCTG
Statistics
Matches: 329, Mismatches: 52, Indels: 41
0.78 0.12 0.10
Matches are distributed among these distances:
323 3 0.01
324 55 0.17
325 123 0.37
326 29 0.09
327 5 0.02
329 1 0.00
330 3 0.01
335 3 0.01
336 87 0.26
337 2 0.01
338 16 0.05
339 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (326 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTAGGCTACTGCTAAGGTATTTTCAATTTCT
GTTTCAAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTCTTTT
CAATTTTAATTGTTTTTCAAAAAAATCAACTCATACTGCGAGAGGTAAGTTGAGCCTCAGGACAC
GCTGAGGTAATTTCAATCTATGTTTTCTCCAATTCATGCTTTTCAAAAATCAACTCATATTACGA
GAAATGAGTTAAGCCTCAGGGCACACCGAGGTATTCTCAAAATCTGTTTTACAATTTATGTTTCC
A
Found at i:10694076 original size:13 final size:13
Alignment explanation
Indices: 10694060--10694084 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10694050 GCTATTTTCA
10694060 ATTTCTGTTTTTG
1 ATTTCTGTTTTTG
10694073 ATTTCTGTTTTT
1 ATTTCTGTTTTT
10694085 AAAAGTCAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.08, G:0.12, T:0.72
Consensus pattern (13 bp):
ATTTCTGTTTTTG
Found at i:10695039 original size:17 final size:18
Alignment explanation
Indices: 10695019--10695052 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
10695009 AAGAAAATAC
10695019 AAATAAAAAAAT-TAAAA
1 AAATAAAAAAATATAAAA
*
10695036 AAATATAAAAATATAAA
1 AAATAAAAAAATATAAA
10695053 TTTTTACCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (18 bp):
AAATAAAAAAATATAAAA
Found at i:10695174 original size:11 final size:11
Alignment explanation
Indices: 10695155--10695189 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
10695145 CCCCTTCCCC
10695155 CTCCCTTCTCT
1 CTCCCTTCTCT
10695166 CTCCCTTCTCT
1 CTCCCTTCTCT
10695177 CTTCCC-TCTCT
1 C-TCCCTTCTCT
10695188 CT
1 CT
10695190 TCTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:10695677 original size:3 final size:3
Alignment explanation
Indices: 10695669--10695729 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
10695659 TGTATTTCAA
10695669 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
10695717 TAT TAT TAT TAT T
1 TAT TAT TAT TAT T
10695730 GTACATTAGT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:10695834 original size:123 final size:124
Alignment explanation
Indices: 10695705--10695935 Score: 308
Period size: 123 Copynumber: 1.9 Consensus size: 124
10695695 TTATTATTAT
* * * * *
10695705 TATTATTATTATTATTATTATTATTGTACATTAGTGTATA-TCTTCATGT-ATGTATATATATAT
1 TATTATTATTATTATTATTATCATT-AACATTACTATATATTCTT-AT-TAATGTATATATACAT
* *
10695768 GTAGTAATGTTTTT-ATTACTTTATTTTAATAT-TTTTATTATAATAGCTTTTGTATTTCAA
63 ATAGTAATGTTTTTAATGACTTTATTTTAATATATTTTATTATAATAGCTTTTGTATTTCAA
10695828 TATTATTATTATTATTATTATCATTAACATTACTATATATTCTTATTAGATGTATATATACATAT
1 TATTATTATTATTATTATTATCATTAACATTACTATATATTCTTATTA-ATGTATATATACATAT
* *
10695893 ATTACTGTTTTTAATGACTTTATTTTAATATCATTTTATTATA
65 AGTAATGTTTTTAATGACTTTATTTTAATAT-ATTTTATTATA
10695936 TTTACTTTTT
Statistics
Matches: 93, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
121 1 0.01
122 13 0.14
123 52 0.56
124 17 0.18
126 10 0.11
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (124 bp):
TATTATTATTATTATTATTATCATTAACATTACTATATATTCTTATTAATGTATATATACATATA
GTAATGTTTTTAATGACTTTATTTTAATATATTTTATTATAATAGCTTTTGTATTTCAA
Found at i:10696357 original size:2 final size:2
Alignment explanation
Indices: 10696350--10696376 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10696340 TACTATACTG
10696350 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
10696377 TTTCTTAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10700252 original size:2 final size:2
Alignment explanation
Indices: 10700245--10700281 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
10700235 GAGAAACTTT
10700245 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10700282 GTATGCACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10701777 original size:32 final size:32
Alignment explanation
Indices: 10701711--10701778 Score: 77
Period size: 32 Copynumber: 2.1 Consensus size: 32
10701701 TTTTTGTTAA
* * *
10701711 TGTTGGATTCTGAAATTTTAGTTTATTATGTT
1 TGTTGGATTCTAAAATTTTAGTCTATGATGTT
10701743 TGTTGGATTCTAAAATTATTATGTCT-TGAT-TT
1 TGTTGGATTCTAAAATT-TTA-GTCTATGATGTT
10701775 TGTT
1 TGTT
10701779 AGATATTGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
32 22 0.71
33 6 0.19
34 3 0.10
ACGTcount: A:0.22, C:0.04, G:0.18, T:0.56
Consensus pattern (32 bp):
TGTTGGATTCTAAAATTTTAGTCTATGATGTT
Found at i:10701804 original size:27 final size:27
Alignment explanation
Indices: 10701774--10701846 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 27
10701764 TGTCTTGATT
10701774 TTGTTAGATATTGATTATGTTTCAAGC
1 TTGTTAGATATTGATTATGTTTCAAGC
*
10701801 TTGTTAGATATTGAATTTATTATGTTTTAAGC
1 TTGTTAGATATTG-----ATTATGTTTCAAGC
*
10701833 TTGTTGGATATTGA
1 TTGTTAGATATTGA
10701847 AATGATTGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
27 14 0.36
32 25 0.64
ACGTcount: A:0.26, C:0.04, G:0.19, T:0.51
Consensus pattern (27 bp):
TTGTTAGATATTGATTATGTTTCAAGC
Found at i:10701826 original size:32 final size:32
Alignment explanation
Indices: 10701787--10701847 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
10701777 TTAGATATTG
10701787 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
1 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
* *
10701819 ATTATGTTTTAAGCTTGTTGGATATTGAA
1 ATTATGTTTCAAGCTTGTTAGATATTGAA
10701848 ATGATTGACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.28, C:0.05, G:0.18, T:0.49
Consensus pattern (32 bp):
ATTATGTTTCAAGCTTGTTAGATATTGAATTT
Found at i:10702850 original size:43 final size:43
Alignment explanation
Indices: 10702789--10702874 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
10702779 GAAGATATTG
* *
10702789 ATAATGTGGTGTAATATTAGTTCTGCACTTGGACAATGTTGTT
1 ATAATGTGCTGTAATATTAGTTATGCACTTGGACAATGTTGTT
*
10702832 ATAATGTGCTGTAATATTAGTTATGCACTTGGATAATGTTGTT
1 ATAATGTGCTGTAATATTAGTTATGCACTTGGACAATGTTGTT
10702875 GTTATCATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43
Consensus pattern (43 bp):
ATAATGTGCTGTAATATTAGTTATGCACTTGGACAATGTTGTT
Found at i:10702892 original size:46 final size:43
Alignment explanation
Indices: 10702789--10702914 Score: 146
Period size: 46 Copynumber: 2.8 Consensus size: 43
10702779 GAAGATATTG
* *
10702789 ATAATGTGGTGTAATATTAGTTCTGCACTTGGACAA-TGTTGTT
1 ATAATGT-GTGTAATATTAGTTATGCACTTGGATAATTGTTGTT
10702832 ATAATGTGCTGTAATATTAGTTATGCACTTGGATAATGTTGTTGTT
1 ATAATGTG-TGTAATATTAGTTATGCACTTGGATAA--TTGTTGTT
* * * *
10702878 ATCATGTAGTGTAATACTAATTATGCATTTGGATAAT
1 ATAATGT-GTGTAATATTAGTTATGCACTTGGATAAT
10702915 ATTATTAATT
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
42 1 0.01
43 32 0.44
44 1 0.01
46 37 0.51
47 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.43
Consensus pattern (43 bp):
ATAATGTGTGTAATATTAGTTATGCACTTGGATAATTGTTGTT
Found at i:10703366 original size:29 final size:29
Alignment explanation
Indices: 10703305--10703364 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
10703295 CCAGAAAAGT
*
10703305 AAATCATTTTCCAGAAATTATTTTCCAGG
1 AAATCATTTTCCAGAAATCATTTTCCAGG
10703334 AAATCATTTTCCAGAAATCATTTTCC-GG
1 AAATCATTTTCCAGAAATCATTTTCCAGG
10703362 AAA
1 AAA
10703365 ATATTTTACC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 5 0.17
29 25 0.83
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (29 bp):
AAATCATTTTCCAGAAATCATTTTCCAGG
Found at i:10703371 original size:14 final size:14
Alignment explanation
Indices: 10703305--10703364 Score: 93
Period size: 14 Copynumber: 4.2 Consensus size: 14
10703295 CCAGAAAAGT
10703305 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
10703319 AAATTATTTTCCAGG
1 AAATCATTTTCCA-G
10703334 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
10703348 AAATCATTTTCCGG
1 AAATCATTTTCCAG
10703362 AAA
1 AAA
10703365 ATATTTTACC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
14 29 0.69
15 13 0.31
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:10706105 original size:30 final size:31
Alignment explanation
Indices: 10706062--10706122 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
10706052 AATGCTAAAC
* *
10706062 TTTAAAATTTAAAAAATA-AATGAATTAAATT
1 TTTAAAATATAAAAAATATAAAG-ATTAAATT
10706093 TTTAAAA-ATAAAAAATATAAAGATTAAATT
1 TTTAAAATATAAAAAATATAAAGATTAAATT
10706123 CTATTTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 17 0.63
31 10 0.37
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (31 bp):
TTTAAAATATAAAAAATATAAAGATTAAATT
Found at i:10706113 original size:23 final size:23
Alignment explanation
Indices: 10706063--10706113 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
10706053 ATGCTAAACT
*
10706063 TTAAAATTTAAAAAATAAATGAA
1 TTAAAATTTAAAAAATAAATAAA
* *
10706086 TTAAATTTTTAAAAATAAA-AAA
1 TTAAAATTTAAAAAATAAATAAA
10706108 TATAAA
1 T-TAAA
10706114 GATTAAATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 3 0.12
23 21 0.88
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
TTAAAATTTAAAAAATAAATAAA
Found at i:10709578 original size:20 final size:20
Alignment explanation
Indices: 10709553--10709592 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
10709543 TTAAGAACAA
10709553 AGATAATTAAAAATTAGCAG
1 AGATAATTAAAAATTAGCAG
10709573 AGATAATTAAAAATTAGCAG
1 AGATAATTAAAAATTAGCAG
10709593 TTAAGGAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.15, T:0.25
Consensus pattern (20 bp):
AGATAATTAAAAATTAGCAG
Found at i:10716404 original size:14 final size:15
Alignment explanation
Indices: 10716377--10716421 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
10716367 GTTTGTGTGC
*
10716377 ATGA-TTTGTACATT
1 ATGATTTTGTGCATT
10716391 ATG-TTTTGTGCATT
1 ATGATTTTGTGCATT
10716405 AATGATTTT-TGCATT
1 -ATGATTTTGTGCATT
10716420 AT
1 AT
10716422 CCGTGCATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 14 0.52
15 9 0.33
16 4 0.15
ACGTcount: A:0.24, C:0.07, G:0.16, T:0.53
Consensus pattern (15 bp):
ATGATTTTGTGCATT
Found at i:10716833 original size:186 final size:186
Alignment explanation
Indices: 10716619--10716967 Score: 470
Period size: 186 Copynumber: 1.9 Consensus size: 186
10716609 GATGATAATC
* * **
10716619 ATGATCATGAAGCAGCGGCAACTACGACTCTT-ACTGTACTTACACTTATATGCTTTTTTTTCCT
1 ATGATCATGAAGCAGCGACAACTACGACT-TTCACTGTACTTACACTTACACACTTTTTTTTCCT
* * * * * * * *
10716683 TTCT-TATTTCAATTAATGGTTTTGTCATTTGTGTTCTTTTGTTACATATATGTACACATTCGCA
65 TT-TGTATTTCAATTAATGGTTTTGTCATTTCTGTTCTTCTGTGACACATAAGTAAACACTCACA
*
10716747 TTTACTTTTTCATTTTA-CCATGAACATGTAAAAGTGTGGAAATTCGATGATAATGATG
129 CTTACTTTTTC-TTTTATCCATGAACATGTAAAAGTGTGGAAATTCGATGATAATGATG
* * * *
10716805 ATGATTATGAAGCAGCGACAGCTACGACTTTCACTTTGCTTACACTTACACACTTTTTTTTCCTT
1 ATGATCATGAAGCAGCGACAACTACGACTTTCACTGTACTTACACTTACACACTTTTTTTTCCTT
* *
10716870 TTGTATTTCAATTAATGGTTTTGTCGTTTCTTTTCTTCTGTGACACATAAGTAAACACTCACACT
66 TTGTATTTCAATTAATGGTTTTGTCATTTCTGTTCTTCTGTGACACATAAGTAAACACTCACACT
*
10716935 TACTTTTTCTTTTATCCGTGAACATGTAAAAGT
131 TACTTTTTCTTTTATCCATGAACATGTAAAAGT
10716968 ATAAAACCCC
Statistics
Matches: 140, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
185 8 0.06
186 132 0.94
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.43
Consensus pattern (186 bp):
ATGATCATGAAGCAGCGACAACTACGACTTTCACTGTACTTACACTTACACACTTTTTTTTCCTT
TTGTATTTCAATTAATGGTTTTGTCATTTCTGTTCTTCTGTGACACATAAGTAAACACTCACACT
TACTTTTTCTTTTATCCATGAACATGTAAAAGTGTGGAAATTCGATGATAATGATG
Found at i:10717609 original size:410 final size:412
Alignment explanation
Indices: 10716831--10717616 Score: 1080
Period size: 410 Copynumber: 1.9 Consensus size: 412
10716821 GACAGCTACG
* * *
10716831 ACTTTCACTTTGCTTACACTTACACACTTTTTTTTCCTTTTGTATTTCAATTAATGGTTTTGTCG
1 ACTTTCACTTTACTTACACTTACACACATTTTTTTCCTTATGTATTTCAATTAATGGTTTTGTCG
*
10716896 TTTCTTTTCTTCTGTGACACATAAGTAAACACTCACACTTACTTTTTCTTTTATCCGTGAACATG
66 TTTCTTTTCTTCTATGACACATAAGTAAACACTCACACTTACTTTTTCTTTTATCCGTGAACATG
* * ** * * *
10716961 TAAAAGTATAAAACCCCTTATGGCTCACATGTGCACGCGTATACTCTATCTTACTTACCTTTCCC
131 TAAAACTATAAAACCCCTCATGGCTCACACATGCACACGTATACTCTACCTTACTTACCCTTCCC
* * * ** *
10717026 CCTACCCCATTTATTTTTCGTTATTGTTTAGTTTTATTCTATGAACAAAAATTAATTTCTAAATA
196 CCTACCCCATTTATTTTTCATTATTCTTCAGTTTTATTCTACAAACAAAAATTAATTCCTAAATA
* * * * *
10717091 GTATTATAATTATGGCGTAAAGAAAAACAAAGCATTGGAGAGGCTGATATTGTTTGGAAGTGGCA
261 GTATTATAATAATGGCGTAAAGAAAAACAAAGCATTGGAGAGGCTGATACTATTTGGAAATGGAA
* * * *
10717156 GGAAATGATCTACTTCAAAAGGCAAGCATTAAAACTGTTATGTGCATGATTTGTGAATGATTCAT
326 AGAAATGATCTACTTCAAAAGGCAAGAATCAAAACTATTATGTGCATGATTTGTGAATGATTCAT
10717221 GTATTATGATGCATCAACAATA
391 GTATTATGATGCATCAACAATA
* *
10717243 ACTTTCACTTTACTTACACTTATACACATTTTTTTCCTTATGTA-TTCAAATTAGTGGTTTT-TC
1 ACTTTCACTTTACTTACACTTACACACATTTTTTTCCTTATGTATTTC-AATTAATGGTTTTGTC
* * * * * ** *
10717306 TTTTGTTTTCTTCTATTATACATACA-TATACACTTGCACTTATTTTTTCTTTT-TACCGTGAAC
65 GTTTCTTTTCTTCTATGACACATA-AGTAAACACTCACACTTACTTTTTCTTTTAT-CCGTGAAC
* *
10717369 ATGTAAAACTATAAAACCCCCTCATGGCTCCCACATGCATACGTATACTCTACCTTACTTACCCT
128 ATGTAAAACTATAAAA-CCCCTCATGGCTCACACATGCACACGTATACTCTACCTTACTTACCCT
*
10717434 TCCCCC-ACCCCTTTTATTTTTCATTA-TCTTCAGTTTTATTCTACAAACAAAAATTAATTCCTA
192 TCCCCCTACCCCATTTATTTTTCATTATTCTTCAGTTTTATTCTACAAACAAAAATTAATTCCTA
* * * * *
10717497 GATAGTATTATGATAATGGCGTAAAGAAAAATAAAGCATTGGTGAGGTTGATACTATTTGGAAAT
257 AATAGTATTATAATAATGGCGTAAAGAAAAACAAAGCATTGGAGAGGCTGATACTATTTGGAAAT
* *
10717562 GGAAAGAAATGATCTATTTCAAAAGGCAAGAATCAGAACTATTATGTGCATGATT
322 GGAAAGAAATGATCTACTTCAAAAGGCAAGAATCAAAACTATTATGTGCATGATT
10717617 CGTGCATTAT
Statistics
Matches: 324, Mismatches: 46, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
410 137 0.42
411 88 0.27
412 99 0.31
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (412 bp):
ACTTTCACTTTACTTACACTTACACACATTTTTTTCCTTATGTATTTCAATTAATGGTTTTGTCG
TTTCTTTTCTTCTATGACACATAAGTAAACACTCACACTTACTTTTTCTTTTATCCGTGAACATG
TAAAACTATAAAACCCCTCATGGCTCACACATGCACACGTATACTCTACCTTACTTACCCTTCCC
CCTACCCCATTTATTTTTCATTATTCTTCAGTTTTATTCTACAAACAAAAATTAATTCCTAAATA
GTATTATAATAATGGCGTAAAGAAAAACAAAGCATTGGAGAGGCTGATACTATTTGGAAATGGAA
AGAAATGATCTACTTCAAAAGGCAAGAATCAAAACTATTATGTGCATGATTTGTGAATGATTCAT
GTATTATGATGCATCAACAATA
Found at i:10717777 original size:24 final size:24
Alignment explanation
Indices: 10717745--10717791 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
10717735 CACTCGCACC
10717745 TACTTTTTTTTTGTCGCAAACATG
1 TACTTTTTTTTTGTCGCAAACATG
*
10717769 TACTTTTTTTTTGTTGCAAACAT
1 TACTTTTTTTTTGTCGCAAACAT
10717792 ATAAACTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.15, G:0.11, T:0.53
Consensus pattern (24 bp):
TACTTTTTTTTTGTCGCAAACATG
Found at i:10720202 original size:53 final size:53
Alignment explanation
Indices: 10720119--10720224 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
10720109 CCCCTTATTG
*
10720119 CCTTTGTATGTGTGTGTGTGTGATTTGTGCATTATGTTTTGTGCATTAATGAT
1 CCTTTGTATGTGTGTGTGTGTGATTCGTGCATTATGTTTTGTGCATTAATGAT
10720172 CCTTTGTATGTGTGTGTGTGTGATTCGTGCATTATGTTTTGTGCATTAATGAT
1 CCTTTGTATGTGTGTGTGTGTGATTCGTGCATTATGTTTTGTGCATTAATGAT
10720225 TCATGCATTA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.15, C:0.08, G:0.26, T:0.50
Consensus pattern (53 bp):
CCTTTGTATGTGTGTGTGTGTGATTCGTGCATTATGTTTTGTGCATTAATGAT
Found at i:10720610 original size:188 final size:187
Alignment explanation
Indices: 10720271--10720610 Score: 484
Period size: 188 Copynumber: 1.8 Consensus size: 187
10720261 CAGCTATAAC
* *
10720271 TCTCATTGTACTTACACATACGCTTTTGTTTTCCTTCCCTATTTCAATTAATGGTTTTGTCGTTT
1 TCTCACTGTACTTACACATACACTTTTGTTTTCCTTCCCTATTTCAATTAATGGTTTTGTCGTTT
* * ** * * *
10720336 GTTTTCTTTTGTTACACATACGCACACATGTGCACTTGCTTTTTCTTTTTGCTGCAAACATGTAA
66 GTTTTCTTTTATTACACATACGCACACACGCACACTTACTTTTTCTTTTTGCCGCAAACATATAA
* *
10720401 AAGTGTACAAACTCAATGATGACGATATGATGATTATGAAACAAAGGCAGCTATGGG
131 AAGTGAAAAAACTCAATGATGACGATATGATGATTATGAAACAAAGGCAGCTATGGG
* * *
10720458 TCTCACTGTACTTACACTTGCACACTTTT-TTTTCTTTCCCTATTTCAATTAATGGTTTTTTCGT
1 TCTCACTGTACTTACACAT--ACACTTTTGTTTTCCTTCCCTATTTCAATTAATGGTTTTGTCGT
* **
10720522 TTGTTTTCTTTTATTACACATACGTACACACGCACACTTACTTTTTCTTTTTGCCGCGGACATAT
64 TTGTTTTCTTTTATTACACATACGCACACACGCACACTTACTTTTTCTTTTTGCCGCAAACATAT
**
10720587 AAAAGTGAAAAAACTTGATGATGA
129 AAAAGTGAAAAAACTCAATGATGA
10720611 TGGTGATCAT
Statistics
Matches: 132, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
187 17 0.13
188 108 0.82
189 7 0.05
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41
Consensus pattern (187 bp):
TCTCACTGTACTTACACATACACTTTTGTTTTCCTTCCCTATTTCAATTAATGGTTTTGTCGTTT
GTTTTCTTTTATTACACATACGCACACACGCACACTTACTTTTTCTTTTTGCCGCAAACATATAA
AAGTGAAAAAACTCAATGATGACGATATGATGATTATGAAACAAAGGCAGCTATGGG
Found at i:10726927 original size:6 final size:6
Alignment explanation
Indices: 10726916--10726945 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
10726906 TCCTCTTGAG
10726916 CATTCA CATTCA CATTCA CATTCA CATTCA
1 CATTCA CATTCA CATTCA CATTCA CATTCA
10726946 TGCGTCTACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (6 bp):
CATTCA
Found at i:10736853 original size:19 final size:19
Alignment explanation
Indices: 10736816--10736853 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
10736806 CAAGTAAGAA
*
10736816 TTGCACACGGCTTGAGCAC
1 TTGCACACGGCGTGAGCAC
10736835 TTGCACACGAGCGTG-GCAC
1 TTGCACACG-GCGTGAGCAC
10736854 ACGGCAGTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (19 bp):
TTGCACACGGCGTGAGCAC
Found at i:10741054 original size:30 final size:30
Alignment explanation
Indices: 10741006--10741096 Score: 166
Period size: 30 Copynumber: 3.1 Consensus size: 30
10740996 CAAATAGGCG
10741006 AAGCTAG-TTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
*
10741035 AAGCTAGTTTAAATGGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
10741065 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
10741095 AA
1 AA
10741097 ACTTTCGTTT
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
29 7 0.12
30 52 0.88
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACTTAGTGCCA
Found at i:10752232 original size:12 final size:12
Alignment explanation
Indices: 10752215--10752243 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
10752205 GCCACATAGG
10752215 CGTGTGGTCGGC
1 CGTGTGGTCGGC
10752227 CGTGTGGTCGGC
1 CGTGTGGTCGGC
10752239 CGTGT
1 CGTGT
10752244 AATAGAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.24, G:0.48, T:0.28
Consensus pattern (12 bp):
CGTGTGGTCGGC
Found at i:10752574 original size:2 final size:2
Alignment explanation
Indices: 10752567--10752594 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
10752557 TGTTTGATTG
10752567 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10752595 TTACATGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10759421 original size:18 final size:18
Alignment explanation
Indices: 10759398--10759441 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
10759388 TGTGGTAGGC
*
10759398 CGTGTGATGGAACACGGG
1 CGTGTGATGGAACACGGA
10759416 CGTGTGATGGAACACGGA
1 CGTGTGATGGAACACGGA
10759434 CGTGTGAT
1 CGTGTGAT
10759442 CGACGAGCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.23, C:0.16, G:0.41, T:0.20
Consensus pattern (18 bp):
CGTGTGATGGAACACGGA
Found at i:10760014 original size:18 final size:19
Alignment explanation
Indices: 10759977--10760015 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
10759967 TATGATTTGA
* *
10759977 TACTGTATATCTGTTACTG
1 TACTGAATATCTGATACTG
10759996 TACTGAATAT-TGATACTG
1 TACTGAATATCTGATACTG
10760014 TA
1 TA
10760016 ATGGGCCAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (19 bp):
TACTGAATATCTGATACTG
Found at i:10760839 original size:11 final size:11
Alignment explanation
Indices: 10760823--10760847 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10760813 GTGTGTTTAA
10760823 AATGGTTAATT
1 AATGGTTAATT
10760834 AATGGTTAATT
1 AATGGTTAATT
10760845 AAT
1 AAT
10760848 AGGTATAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (11 bp):
AATGGTTAATT
Found at i:10769125 original size:17 final size:18
Alignment explanation
Indices: 10769103--10769141 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
10769093 TTAGTTACAA
10769103 ATTTAAAA-AAATTATCT
1 ATTTAAAATAAATTATCT
10769120 ATTTAAAATTCAAATTATCT
1 ATTTAAAA-T-AAATTATCT
10769140 AT
1 AT
10769142 ATAATAACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
20 11 0.58
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTTAAAATAAATTATCT
Found at i:10769670 original size:19 final size:18
Alignment explanation
Indices: 10769619--10769672 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
10769609 TATTAAATAT
10769619 TATAATATTATGTTAT-AC
1 TATAATATTA-GTTATAAC
*
10769637 TATATATTTTA-TTATAATC
1 TATA-ATATTAGTTATAA-C
10769656 TATAATATTAGTTATAA
1 TATAATATTAGTTATAA
10769673 ATAGGCATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
17 4 0.13
18 10 0.33
19 16 0.53
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.52
Consensus pattern (18 bp):
TATAATATTAGTTATAAC
Found at i:10775182 original size:45 final size:45
Alignment explanation
Indices: 10775118--10775291 Score: 208
Period size: 45 Copynumber: 3.8 Consensus size: 45
10775108 TGTAACCCGC
*
10775118 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
*
10775163 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * *
10775209 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
10775256 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
10775292 ATGCCAAATA
Statistics
Matches: 109, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 36 0.33
46 33 0.30
47 32 0.29
49 3 0.03
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:10775284 original size:93 final size:92
Alignment explanation
Indices: 10775126--10775296 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 92
10775116 GCCCATAAGT
*
10775126 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
10775191 GAGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
* *
10775218 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
10775283 CGAGTTCGGATGCC
65 CGAGCTCGGATGCC
10775297 AAATATCCTA
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 27 0.36
93 47 0.64
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:10777692 original size:15 final size:15
Alignment explanation
Indices: 10777666--10777721 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
10777656 CAAGGAAACC
10777666 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
10777681 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
10777696 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
10777711 GAATAAAGAAA
1 GAATAAAGAAA
10777722 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:10782225 original size:46 final size:44
Alignment explanation
Indices: 10782158--10782331 Score: 161
Period size: 46 Copynumber: 3.8 Consensus size: 44
10782148 GTAACCCGCC
* *
10782158 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAAT
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGC-AT
* *
10782204 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTAGCAT
*** * ** *
10782249 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCAT
1 -CATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
*
10782296 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 -CATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
10782332 ATGCCCAAAT
Statistics
Matches: 104, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
45 2 0.02
46 67 0.64
47 33 0.32
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (44 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTAGCAT
Found at i:10782276 original size:93 final size:93
Alignment explanation
Indices: 10782164--10782336 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
10782154 CGCCCATAAG
** *
10782164 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAAT-CATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGC-ATCCATAAGTGAACTCGGACTCAACTC
10782228 AACGAGCTCGGATGCCTAGTTACATCTCT
65 AACGAGCTCGGATGCCTAGTTACATCTCT
* *
10782257 CGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
10782322 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
10782337 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:10793926 original size:51 final size:50
Alignment explanation
Indices: 10793767--10793923 Score: 242
Period size: 51 Copynumber: 3.1 Consensus size: 50
10793757 ACTTCTGATC
* *
10793767 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATA
1 AGTGACAAGTGATAAGTGGTAG-CTTAGCTACACTTATCTGATCAGTGACA
* *
10793818 AGTGACAAATGATAAGTGGTAGCTTAGCTACTCTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
* *
10793868 AGTGATAAGTGATAAGTGGTAGCTTTAGCTGCACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAGTGACA
10793919 AGTGA
1 AGTGA
10793924 TAAATGTGAT
Statistics
Matches: 97, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
50 46 0.47
51 51 0.53
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.29
Consensus pattern (50 bp):
AGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
Found at i:10801724 original size:51 final size:50
Alignment explanation
Indices: 10801565--10801721 Score: 251
Period size: 51 Copynumber: 3.1 Consensus size: 50
10801555 ACTTCTGATC
* *
10801565 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATA
1 AGTGACAAGTGATAAGTGGTAG-CTTAGCTACACTTATCTGATCAGTGACA
* *
10801616 AGTGACAAATGATAAGTGGTAGCTTAGCTACTCTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
*
10801666 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAGTGACA
10801717 AGTGA
1 AGTGA
10801722 TAAATGTGAT
Statistics
Matches: 98, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
50 46 0.47
51 52 0.53
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (50 bp):
AGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
Found at i:10806410 original size:73 final size:73
Alignment explanation
Indices: 10806158--10806592 Score: 483
Period size: 74 Copynumber: 5.9 Consensus size: 73
10806148 CTGTTTTCAA
* *
10806158 AAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATT
1 AAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC-AATT
****
10806223 CTACT-TTAAAA
64 -TA-TGTTTTTC
* ** * *
10806234 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGTTTACG-TGTTGAGTCACTTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-GCACGCTG-AG-GT-ATTTTCAA
*
10806297 TTTCTGTTTTT-
62 TTTATGTTTTTC
* *
10806308 ----ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACACTGAGGCATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTA
10806369 TGTTTTTC
66 TGTTTTTC
* *
10806377 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTA
* *
10806442 TGCTTTCC
66 TGTTTTTC
* *
10806450 AAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTGA-TTTCAATT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGT-ATTTTCAATT
*
10806514 TATGTTTGTC
64 TATGTTTTTC
10806524 AAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
1 -----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
10806589 ATTT
61 ATTT
10806593 CTGCTTTCCA
Statistics
Matches: 307, Mismatches: 33, Indels: 36
0.82 0.09 0.10
Matches are distributed among these distances:
68 17 0.06
69 1 0.00
70 36 0.12
71 4 0.01
73 63 0.21
74 68 0.22
75 31 0.10
76 20 0.07
77 6 0.02
78 61 0.20
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTA
TGTTTTTC
Found at i:10806892 original size:89 final size:87
Alignment explanation
Indices: 10806673--10807085 Score: 465
Period size: 89 Copynumber: 4.6 Consensus size: 87
10806663 GCTGAGGTAA
* ** *
10806673 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATCACGAGAGGTGAGTTAAGCCTCGGCTCACAT
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--CACAT
*
10806738 GCTGAGGTCTTTTCAATTTCTATT
64 GCTGAGGTATTTTCAATTTCTATT
* *
10806762 TTT-AATTTCTGTTTTTCAAAAATCAACTCATACTGCAAGAGGTGAGTTGAGCCTCAGG-ACATG
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACATG
*
10806825 CTGAGGTAATTTCAATTTCTATT
65 CTGAGGTATTTTCAATTTCTATT
* *
10806848 TTCTCCAATTTATGTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
1 TT-T-CAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--GGCAC
*
10806913 --GCTGAGGTATTTTCAATTTCTGTT
62 ATGCTGAGGTATTTTCAATTTCTATT
* * * * *
10806937 TTTCAATTTCCGCTTTTCAAAAAAAAAACCAACTCATATTACGAAAGGTGAGTTGAGCCTCGGCT
1 TTTCAATTTCTGTTTTTC-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--
* * *
10807002 CACATGCTAAGGTATTTTCAATTTATGTTT
59 CACATGCTGAGGTATTTTCAATTTCT-ATT
* * *
10807032 TTTCAATTTATATTTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
10807086 GTGGGTTCAC
Statistics
Matches: 275, Mismatches: 33, Indels: 31
0.81 0.10 0.09
Matches are distributed among these distances:
86 28 0.10
87 13 0.05
88 47 0.17
89 77 0.28
90 36 0.13
91 2 0.01
92 37 0.13
94 19 0.07
95 16 0.06
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (87 bp):
TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACATGC
TGAGGTATTTTCAATTTCTATT
Found at i:10806941 original size:14 final size:14
Alignment explanation
Indices: 10806922--10806956 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
10806912 CGCTGAGGTA
* *
10806922 TTTTCAATTTCTGT
1 TTTTCAATTTCCGC
10806936 TTTTCAATTTCCGC
1 TTTTCAATTTCCGC
10806950 TTTTCAA
1 TTTTCAA
10806957 AAAAAAAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGC
Found at i:10807036 original size:15 final size:15
Alignment explanation
Indices: 10807016--10807048 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
10807006 TGCTAAGGTA
*
10807016 TTTTCAATTTATGTT
1 TTTTCAATTTATATT
10807031 TTTTCAATTTATATT
1 TTTTCAATTTATATT
10807046 TTT
1 TTT
10807049 CAAAGATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.06, G:0.03, T:0.70
Consensus pattern (15 bp):
TTTTCAATTTATATT
Found at i:10808909 original size:53 final size:53
Alignment explanation
Indices: 10808852--10808952 Score: 145
Period size: 53 Copynumber: 1.9 Consensus size: 53
10808842 TACTTGGGTA
10808852 TTATATTATAT-ATATATTTTTATATGTTATA-TA-TATACTTTTAATATTGTATT
1 TTATA-TATATCATATATTTTTA-ATGTTATATTATTATA-TTTTAATATTGTATT
*
10808905 TTATATATATCATATATTTTTAATGTTGTATTATTATATTTTAATATT
1 TTATATATATCATATATTTTTAATGTTATATTATTATATTTTAATATT
10808953 ATACTACATA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
52 12 0.27
53 28 0.64
54 4 0.09
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (53 bp):
TTATATATATCATATATTTTTAATGTTATATTATTATATTTTAATATTGTATT
Found at i:10808926 original size:32 final size:32
Alignment explanation
Indices: 10808879--10808943 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
10808869 TTTTATATGT
10808879 TATATATATACTTTTAATATTGTATT-TTATA
1 TATATATATACTTTTAATATTGTATTATTATA
* *
10808910 TATATCATATATTTTTAATGTTGTATTATTATA
1 TATAT-ATATACTTTTAATATTGTATTATTATA
10808943 T
1 T
10808944 TTTAATATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 5 0.17
32 19 0.63
33 6 0.20
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (32 bp):
TATATATATACTTTTAATATTGTATTATTATA
Found at i:10808964 original size:53 final size:52
Alignment explanation
Indices: 10808858--10808965 Score: 130
Period size: 53 Copynumber: 2.1 Consensus size: 52
10808848 GGTATTATAT
* * **
10808858 TATATATATATTTTTATATGTTATATATATACTTTTAATATTGTATTTTATA
1 TATATATATATTTTTATATGTTATATATATACTTTTAATATTATACTACATA
*
10808910 TATATCATATATTTTTA-ATGTTGTATTATTATA-TTTTAATATTATACTACATA
1 TATAT-ATATATTTTTATATGTTATA-TA-TATACTTTTAATATTATACTACATA
10808963 TAT
1 TAT
10808966 TTTCATATTA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
52 12 0.25
53 32 0.67
54 4 0.08
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (52 bp):
TATATATATATTTTTATATGTTATATATATACTTTTAATATTATACTACATA
Found at i:10808992 original size:26 final size:26
Alignment explanation
Indices: 10808950--10809038 Score: 90
Period size: 26 Copynumber: 3.3 Consensus size: 26
10808940 ATATTTTAAT
10808950 ATTATACTACATATATTTTCATATTAC
1 ATTATA-TACATATATTTTCATATTAC
* *
10808977 ATTATATACATATATTTTTATA-TAT
1 ATTATATACATATATTTTCATATTAC
** *
10809002 ATTATCATGTATATATTTTGATATTAC
1 ATTAT-ATACATATATTTTCATATTAC
10809029 TAGTTATATA
1 -A-TTATATA
10809039 TTACTTATAT
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
25 7 0.14
26 29 0.57
27 8 0.16
28 3 0.06
29 4 0.08
ACGTcount: A:0.37, C:0.08, G:0.03, T:0.52
Consensus pattern (26 bp):
ATTATATACATATATTTTCATATTAC
Found at i:10810402 original size:8 final size:8
Alignment explanation
Indices: 10810389--10810427 Score: 69
Period size: 8 Copynumber: 4.9 Consensus size: 8
10810379 GAAAAAGAGA
10810389 GAAGAAGG
1 GAAGAAGG
10810397 GAAGAAGG
1 GAAGAAGG
10810405 GAAGAAGG
1 GAAGAAGG
*
10810413 GAAGAAGA
1 GAAGAAGG
10810421 GAAGAAG
1 GAAGAAG
10810428 AAGAAAGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (8 bp):
GAAGAAGG
Found at i:10810441 original size:16 final size:17
Alignment explanation
Indices: 10810376--10810443 Score: 50
Period size: 19 Copynumber: 3.8 Consensus size: 17
10810366 CATTTTCAGC
10810376 AAAGAA-AAAGAGAGAAG
1 AAAGAAGAAAGA-AGAAG
* *
10810393 AAGGGAAGAAGGGAAGAAGG
1 AA-AGAAGAA-AGAAGAA-G
*
10810413 GAAGAAGAGAAGAAGAAG
1 AAAGAAGA-AAGAAGAAG
10810431 AAAGAA-AAAGAAG
1 AAAGAAGAAAGAAG
10810444 GAGAGGAGGA
Statistics
Matches: 40, Mismatches: 6, Indels: 11
0.70 0.11 0.19
Matches are distributed among these distances:
16 6 0.15
17 3 0.08
18 9 0.22
19 17 0.43
20 5 0.12
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (17 bp):
AAAGAAGAAAGAAGAAG
Found at i:10810529 original size:14 final size:14
Alignment explanation
Indices: 10810480--10810542 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
10810470 TGAGAGAAGA
10810480 AAAAAGAA--AAAG
1 AAAAAGAAGGAAAG
10810492 AAAAAGAGAAGGAGAAG
1 -AAAA-AGAAGGA-AAG
* * *
10810509 AAGAAGAGGGAAGG
1 AAAAAGAAGGAAAG
10810523 AAAAAGAAGGAAAG
1 AAAAAGAAGGAAAG
10810537 AAAAAG
1 AAAAAG
10810543 GTAATTTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
13 4 0.10
14 23 0.57
15 6 0.15
16 4 0.10
17 3 0.08
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (14 bp):
AAAAAGAAGGAAAG
Done.