Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 422 of 438
Found at i:130658677 original size:26 final size:26
Alignment explanation
Indices: 130658639--130658703 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
130658629 TGGCTATCTA
*
130658639 GAGC-TCCTGATTAAAGGCTCTTCGT
1 GAGCTTCCTGATTAAAAGCTCTTCGT
* * *
130658664 GAGCTTCCTAATTAAAAGTTCTTTGT
1 GAGCTTCCTGATTAAAAGCTCTTCGT
*
130658690 GAACTTCCTGATTA
1 GAGCTTCCTGATTA
130658704 TGACTCTTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 4 0.12
26 29 0.88
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (26 bp):
GAGCTTCCTGATTAAAAGCTCTTCGT
Found at i:130663360 original size:2 final size:2
Alignment explanation
Indices: 130663355--130663404 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
130663345 AAATGAAACC
130663355 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
130663397 AT AT -T AT A
1 AT AT AT AT A
130663405 GTAAAAGTTC
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 46 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:130663880 original size:2 final size:2
Alignment explanation
Indices: 130663873--130663903 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
130663863 TTGAGAAACT
130663873 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
130663904 GTATGCAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:130664799 original size:46 final size:46
Alignment explanation
Indices: 130664618--130664799 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
130664608 TTTGACATGA
* * * * * *
130664618 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
130664664 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
130664710 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
130664756 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
130664800 AGAGCACACT
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.03
46 120 0.97
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:130669150 original size:39 final size:39
Alignment explanation
Indices: 130669096--130669229 Score: 205
Period size: 39 Copynumber: 3.4 Consensus size: 39
130669086 AACAAAGATG
*
130669096 CGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCC
1 CGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCC
* *
130669135 CGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGCC
1 CGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCC
*
130669174 CGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCC
1 CGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAG-CC
* *
130669214 TGAAGGCATTTGTGCG
1 CGAAGGCAATTGTGCG
130669230 GGTTACCATA
Statistics
Matches: 86, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 70 0.81
40 16 0.19
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (39 bp):
CGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCC
Found at i:130672211 original size:14 final size:14
Alignment explanation
Indices: 130672145--130672204 Score: 84
Period size: 14 Copynumber: 4.2 Consensus size: 14
130672135 CCAGAAAAGT
130672145 AAATCATTTTCCAG
1 AAATCATTTTCCAG
* *
130672159 AAATTATTTTTCAGG
1 AAATCATTTTCCA-G
130672174 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
130672188 AAATCATTTTCCGG
1 AAATCATTTTCCAG
130672202 AAA
1 AAA
130672205 ATATTTTACC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
14 28 0.70
15 12 0.30
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:130673215 original size:15 final size:16
Alignment explanation
Indices: 130673191--130673225 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
130673181 TTAAATATTT
130673191 ATATTATATTATTTTA
1 ATATTATATTATTTTA
*
130673207 ATATT-TATTATTTTT
1 ATATTATATTATTTTA
130673222 ATAT
1 ATAT
130673226 ATTTTTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
ATATTATATTATTTTA
Found at i:130673217 original size:20 final size:19
Alignment explanation
Indices: 130673192--130673248 Score: 59
Period size: 17 Copynumber: 3.2 Consensus size: 19
130673182 TAAATATTTA
130673192 TATTATATTATTTTAATATT
1 TATTATATTATTTT-ATATT
*
130673212 TATTAT-TT-TTATATATT
1 TATTATATTATTTTATATT
*
130673229 T-TTATA-TATTTTTTATT
1 TATTATATTATTTTATATT
130673246 TAT
1 TAT
130673249 CAAACTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
16 5 0.16
17 14 0.45
18 4 0.13
19 2 0.06
20 6 0.19
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (19 bp):
TATTATATTATTTTATATT
Found at i:130673217 original size:25 final size:27
Alignment explanation
Indices: 130673178--130673248 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
130673168 TTTTTAAGAT
*
130673178 TTTTTAAATATTTA-TA-TTATAT-TA
1 TTTTTATATATTTATTATTTATATATA
*
130673202 -TTTTA-ATATTTATTATTTTTATATA
1 TTTTTATATATTTATTATTTATATATA
*
130673227 TTTTTATATATTTTTTATTTAT
1 TTTTTATATATTTATTATTTAT
130673249 CAAACTTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
22 7 0.18
23 7 0.18
24 5 0.13
25 2 0.05
26 5 0.13
27 13 0.33
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (27 bp):
TTTTTATATATTTATTATTTATATATA
Found at i:130673221 original size:16 final size:17
Alignment explanation
Indices: 130673190--130673233 Score: 58
Period size: 16 Copynumber: 2.7 Consensus size: 17
130673180 TTTAAATATT
130673190 TATATTATATTA-TTTTA
1 TATATT-TATTATTTTTA
130673207 -ATATTTATTATTTTTA
1 TATATTTATTATTTTTA
130673223 TATATTT-TTAT
1 TATATTTATTAT
130673234 ATATTTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 5 0.20
16 14 0.56
17 6 0.24
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TATATTTATTATTTTTA
Found at i:130673230 original size:10 final size:10
Alignment explanation
Indices: 130673178--130673241 Score: 62
Period size: 10 Copynumber: 6.5 Consensus size: 10
130673168 TTTTTAAGAT
*
130673178 TTTTTAAATA
1 TTTTTATATA
*
130673188 TTTATATTATA
1 TTTTTA-TATA
130673199 TTATTT-TA-A
1 TT-TTTATATA
*
130673208 TATTTAT-TA
1 TTTTTATATA
130673217 TTTTTATATA
1 TTTTTATATA
130673227 TTTTTATATA
1 TTTTTATATA
130673237 TTTTT
1 TTTTT
130673242 TATTTATCAA
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
8 3 0.07
9 10 0.23
10 24 0.55
11 5 0.11
12 2 0.05
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTTATATA
Found at i:130673241 original size:11 final size:11
Alignment explanation
Indices: 130673176--130673244 Score: 50
Period size: 11 Copynumber: 5.8 Consensus size: 11
130673166 ACTTTTTAAG
*
130673176 ATTTTTTAAAT
1 ATTTTTTATAT
130673187 ATTTATATTATATT
1 ATTT-T-TTATA-T
* *
130673201 ATTTTAATATTT
1 ATTTT-TTATAT
130673213 ATTATTTT-TAT
1 ATT-TTTTATAT
130673224 ATATTTTTATAT
1 AT-TTTTTATAT
130673236 ATTTTTTAT
1 ATTTTTTAT
130673245 TTATCAAACT
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
11 19 0.40
12 12 0.26
13 11 0.23
14 5 0.11
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
ATTTTTTATAT
Found at i:130679987 original size:22 final size:23
Alignment explanation
Indices: 130679942--130679992 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
130679932 AAAGGTGTTC
130679942 TTTTTAAAACACAAATTAACAAT
1 TTTTTAAAACACAAATTAACAAT
*
130679965 TTTTTAAAACATAAATTAA-AAT
1 TTTTTAAAACACAAATTAACAAT
130679987 TATTTT
1 T-TTTT
130679993 TTTATGCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (23 bp):
TTTTTAAAACACAAATTAACAAT
Found at i:130680344 original size:2 final size:2
Alignment explanation
Indices: 130680337--130680364 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
130680327 GTAATTTAAA
130680337 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
130680365 GAAATTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:130680345 original size:31 final size:29
Alignment explanation
Indices: 130680271--130680346 Score: 71
Period size: 31 Copynumber: 2.5 Consensus size: 29
130680261 AGGGTAAATC
* *
130680271 TTAAAATTATACATGAATTTTTATTTAAT
1 TTAAAATTATATATGAATTTTGATTTAAT
* * *
130680300 GTATAATTTGATATATGGATTTTGATTGTAAT
1 TTA-AAATT-ATATATGAATTTTGATT-TAAT
130680332 TTAAAATATATATAT
1 TTAAAAT-TATATAT
130680347 ATATATATAT
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
29 2 0.06
30 4 0.11
31 23 0.64
32 7 0.19
ACGTcount: A:0.39, C:0.01, G:0.09, T:0.50
Consensus pattern (29 bp):
TTAAAATTATATATGAATTTTGATTTAAT
Found at i:130680546 original size:30 final size:29
Alignment explanation
Indices: 130680507--130680586 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
130680497 GAACTGAATC
*
130680507 AAATCAAAGTTTTATATATAAAATTGCACA
1 AAATCAAAG-TTCATATATAAAATTGCACA
* * *
130680537 AAATTAAAGTTCATATATAAAGTTGCATA
1 AAATCAAAGTTCATATATAAAATTGCACA
* *
130680566 TTAAACCAAAGTTTATATATA
1 --AAATCAAAGTTCATATATA
130680587 GTTTTAAGAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 17 0.41
30 8 0.20
31 16 0.39
ACGTcount: A:0.49, C:0.09, G:0.07, T:0.35
Consensus pattern (29 bp):
AAATCAAAGTTCATATATAAAATTGCACA
Found at i:130681157 original size:22 final size:22
Alignment explanation
Indices: 130681118--130681176 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
130681108 GTTTTAAGAA
*
130681118 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
130681139 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
130681161 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
130681177 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:130681193 original size:26 final size:24
Alignment explanation
Indices: 130681147--130681206 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
130681137 ATTTGTTTTA
*
130681147 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
130681171 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
130681197 TTTTTTATTT
1 ATATTTATTT
130681207 AATAAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:130682896 original size:19 final size:19
Alignment explanation
Indices: 130682868--130682909 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
130682858 TTTCTAAAAC
130682868 TTTTAAAATT-TATGTTATT
1 TTTTAAAATTATAT-TTATT
*
130682887 TTTTATAATTATATTTATT
1 TTTTAAAATTATATTTATT
130682906 TTTT
1 TTTT
130682910 CTCATCAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 18 0.86
20 3 0.14
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (19 bp):
TTTTAAAATTATATTTATT
Found at i:130691572 original size:26 final size:26
Alignment explanation
Indices: 130691521--130691572 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
130691511 GGATTAGATT
* * *
130691521 TAAAAATTTAAAAAGATTTAAGTTAA
1 TAAAAATTCAAAAAGATTAAAATTAA
*
130691547 TAAAAATTCAAAAATATTAAAATTAA
1 TAAAAATTCAAAAAGATTAAAATTAA
130691573 AAGAATTATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.33
Consensus pattern (26 bp):
TAAAAATTCAAAAAGATTAAAATTAA
Found at i:130694195 original size:51 final size:51
Alignment explanation
Indices: 130694154--130694273 Score: 179
Period size: 51 Copynumber: 2.4 Consensus size: 51
130694144 AAAGTTTTAA
*
130694154 TTTTTAGATACTGATAAAATCTCACAATTATTAAAATTCTAAAAATTAAAG
1 TTTTTAGATACTGATAAAATCTCACAACTATTAAAATTCTAAAAATTAAAG
* * *
130694205 TTTTTAGATAC-GAATAAAATCTCACCACTATCAAAATCCTAAAAATTAAAG
1 TTTTTAGATACTG-ATAAAATCTCACAACTATTAAAATTCTAAAAATTAAAG
*
130694256 TTTTTAGAAACTGATAAA
1 TTTTTAGATACTGATAAA
130694274 TATGATAAAT
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
50 1 0.02
51 60 0.97
52 1 0.02
ACGTcount: A:0.47, C:0.12, G:0.07, T:0.34
Consensus pattern (51 bp):
TTTTTAGATACTGATAAAATCTCACAACTATTAAAATTCTAAAAATTAAAG
Found at i:130703326 original size:15 final size:13
Alignment explanation
Indices: 130703301--130703334 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
130703291 ATAGACACGA
130703301 CCGTGTGACACAC
1 CCGTGTGACACAC
130703314 CCGTGTGACACAC
1 CCGTGTGACACAC
130703327 CCGTGTGA
1 CCGTGTGA
130703335 GGAAGTCTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.21, C:0.35, G:0.26, T:0.18
Consensus pattern (13 bp):
CCGTGTGACACAC
Found at i:130710525 original size:25 final size:25
Alignment explanation
Indices: 130710497--130710549 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
130710487 AGGAATGAAT
130710497 AAAAGAAAAATTAGAAAATAAAA-TA
1 AAAAGAAAAATT-GAAAATAAAAGTA
* *
130710522 AAAATAAAAATTGCAAATAAAAGTA
1 AAAAGAAAAATTGAAAATAAAAGTA
130710547 AAA
1 AAA
130710550 TGGCTAAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.74, C:0.02, G:0.08, T:0.17
Consensus pattern (25 bp):
AAAAGAAAAATTGAAAATAAAAGTA
Found at i:130710550 original size:24 final size:24
Alignment explanation
Indices: 130710494--130710550 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 24
130710484 GTCAGGAATG
*
130710494 AATAAAAGAAAAATTAGAAAATAA
1 AATAAAATAAAAATTAGAAAATAA
*
130710518 AATAAAAATAAAAATT-GCAAATAA
1 AAT-AAAATAAAAATTAGAAAATAA
130710542 AAGTAAAAT
1 AA-TAAAAT
130710551 GGCTAAAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 17 0.59
25 12 0.41
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.19
Consensus pattern (24 bp):
AATAAAATAAAAATTAGAAAATAA
Found at i:130715602 original size:17 final size:17
Alignment explanation
Indices: 130715580--130715612 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
130715570 CACACATATA
130715580 TTTTATTTTTATATAAT
1 TTTTATTTTTATATAAT
*
130715597 TTTTATTTTTTTATAA
1 TTTTATTTTTATATAA
130715613 AAGTTTGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTATTTTTATATAAT
Found at i:130724673 original size:33 final size:33
Alignment explanation
Indices: 130724633--130724710 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
130724623 ATATGTATAC
*
130724633 GTGTAAGACCATAGCTGGGCTATGGCATCT-TGA
1 GTGTAAGACCATAACTGGGCTATGGCAT-TATGA
*
130724666 -TGATAAGACCATAACTGGGTTATGGCATTATGA
1 GTG-TAAGACCATAACTGGGCTATGGCATTATGA
130724699 GTGTAAGACCAT
1 GTGTAAGACCAT
130724711 GGTAGGGTCA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
32 3 0.08
33 35 0.88
34 2 0.05
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.28
Consensus pattern (33 bp):
GTGTAAGACCATAACTGGGCTATGGCATTATGA
Found at i:130725465 original size:19 final size:19
Alignment explanation
Indices: 130725441--130725481 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
130725431 ATAAATTGTT
*
130725441 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
130725460 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
130725479 TTA
1 TTA
130725482 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:130726607 original size:2 final size:2
Alignment explanation
Indices: 130726600--130726625 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
130726590 TGCTTTGATA
130726600 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
130726626 GCAGCCATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:130727926 original size:39 final size:39
Alignment explanation
Indices: 130727868--130727985 Score: 218
Period size: 39 Copynumber: 3.0 Consensus size: 39
130727858 TTATATGATT
* *
130727868 TGGTGTTATATCCGAGCTAAGCCCTGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
130727907 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
130727946 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
130727985 T
1 T
130727986 AACACCATTC
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.27
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:130728017 original size:93 final size:92
Alignment explanation
Indices: 130727898--130728077 Score: 342
Period size: 93 Copynumber: 1.9 Consensus size: 92
130727888 GCCCTGAAGG
130727898 CATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC
1 CATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC
*
130727963 TAAGCCCCGAAGGCATTCGTGCTAACAC
66 TAAG-CCCAAAGGCATTCGTGCTAACAC
130727991 CATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC
1 CATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC
130728056 TAAGCCCAAAGGCATTCGTGCT
66 TAAGCCCAAAGGCATTCGTGCT
130728078 GGTATTATAT
Statistics
Matches: 86, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
92 17 0.20
93 69 0.80
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.27
Consensus pattern (92 bp):
CATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC
TAAGCCCAAAGGCATTCGTGCTAACAC
Found at i:130728019 original size:54 final size:54
Alignment explanation
Indices: 130727937--130728039 Score: 206
Period size: 54 Copynumber: 1.9 Consensus size: 54
130727927 GCCCCGAAGG
130727937 CATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTAACAC
1 CATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTAACAC
130727991 CATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCT
1 CATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCT
130728040 GGTGTTATAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.18, C:0.27, G:0.27, T:0.27
Consensus pattern (54 bp):
CATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTAACAC
Found at i:130728077 original size:38 final size:39
Alignment explanation
Indices: 130727991--130728087 Score: 169
Period size: 39 Copynumber: 2.5 Consensus size: 39
130727981 GTGCTAACAC
*
130727991 CATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGG
1 CATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCAAAGG
130728030 CATTCGTGCTGGTGTTATATCCGGGCTAAG-CCCAAAGG
1 CATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCAAAGG
*
130728068 CATTCGTGCTGGTATTATAT
1 CATTCGTGCTGGTGTTATAT
130728088 TCAGGCTTAA
Statistics
Matches: 56, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
38 26 0.46
39 30 0.54
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.30
Consensus pattern (39 bp):
CATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCAAAGG
Found at i:130733655 original size:27 final size:27
Alignment explanation
Indices: 130733617--130733670 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
130733607 CAAAAACACC
130733617 ATGGAAGAGTTCCCTTAAGCTGGTTTT
1 ATGGAAGAGTTCCCTTAAGCTGGTTTT
130733644 ATGGAAGAGTTCCCTTAAGCTGGTTTT
1 ATGGAAGAGTTCCCTTAAGCTGGTTTT
130733671 TCATATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.15, G:0.26, T:0.37
Consensus pattern (27 bp):
ATGGAAGAGTTCCCTTAAGCTGGTTTT
Found at i:130734246 original size:55 final size:55
Alignment explanation
Indices: 130734180--130734290 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
130734170 TAGAGGATGA
130734180 ATAAAATATGAAATTAAAGCTTATTGAGTCTAGTTTCTTATAAAATAAATTATGT
1 ATAAAATATGAAATTAAAGCTTATTGAGTCTAGTTTCTTATAAAATAAATTATGT
130734235 ATAAAATATGAAATTAAAGCTTATTGAGTCTAGTTTCTTATAAAATAAATTATGT
1 ATAAAATATGAAATTAAAGCTTATTGAGTCTAGTTTCTTATAAAATAAATTATGT
130734290 A
1 A
130734291 AGCAATGGAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.44, C:0.05, G:0.11, T:0.40
Consensus pattern (55 bp):
ATAAAATATGAAATTAAAGCTTATTGAGTCTAGTTTCTTATAAAATAAATTATGT
Found at i:130737992 original size:44 final size:45
Alignment explanation
Indices: 130737902--130738030 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
130737892 GACAGAACGA
*
130737902 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
130737948 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
130737992 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
130738031 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:130743595 original size:44 final size:45
Alignment explanation
Indices: 130743505--130743633 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
130743495 GACAGAACGA
*
130743505 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
130743551 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
130743595 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
130743634 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:130746575 original size:17 final size:15
Alignment explanation
Indices: 130746553--130746587 Score: 52
Period size: 17 Copynumber: 2.2 Consensus size: 15
130746543 ATAGATGAAT
130746553 AATAAACGATATAATAA
1 AATAAACG-TATAA-AA
130746570 AATAAACGTATAAAA
1 AATAAACGTATAAAA
130746585 AAT
1 AAT
130746588 TAGGTAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.28
16 5 0.28
17 8 0.44
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.23
Consensus pattern (15 bp):
AATAAACGTATAAAA
Found at i:130746768 original size:3 final size:3
Alignment explanation
Indices: 130746760--130746898 Score: 165
Period size: 3 Copynumber: 46.3 Consensus size: 3
130746750 AAAAGAAAAT
* * * * *
130746760 ATA ATA ATA ATA GTA ATA AT- ACA ATA GTA ATA ATA ATA GTA ATA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
130746807 ATA AAA ATA ATA GTA ATA ATA ATGG A-A ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
*
130746852 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATTA ATG ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA
130746898 A
1 A
130746899 AGTAGCCAAA
Statistics
Matches: 114, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
2 2 0.02
3 108 0.95
4 4 0.04
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:130748119 original size:130 final size:130
Alignment explanation
Indices: 130747951--130748189 Score: 372
Period size: 130 Copynumber: 1.8 Consensus size: 130
130747941 GTTTTAATGT
* *
130747951 ATTTTTAAAAGACCTGAGTGAAATTTTGAAGGAATATTTGATTATTTTAAACAAACGGGAAATTG
1 ATTTTTAAAAGACATGAGTGAAATTTTGAAGGAATATTTGATTATTTTAAACAAACGCGAAATTG
*
130748016 CAACCCAACACGTTAGGGCACAATTCCACGAGTTGCCAAATATCGCATACCGCTTTCGTTAAGGG
66 CAACCCAACACGTTAGGGCACAATTCCACGAATTGCCAAATATCGCATACCGCTTTCGTTAAGGG
* * * * *
130748081 ATTTTTAAAAGATATGAGTGATATTTTGAAGTG-ATATTTGATTATTTTGAGCAAACTCGAAATT
1 ATTTTTAAAAGACATGAGTGAAATTTTGAAG-GAATATTTGATTATTTTAAACAAACGCGAAATT
* *
130748145 GCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAATATC
65 GCAACCCAACACGTTAGGGCACAATTCCACGAATTGCCAAATATC
130748190 AAATCTCGCC
Statistics
Matches: 98, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
130 97 0.99
131 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (130 bp):
ATTTTTAAAAGACATGAGTGAAATTTTGAAGGAATATTTGATTATTTTAAACAAACGCGAAATTG
CAACCCAACACGTTAGGGCACAATTCCACGAATTGCCAAATATCGCATACCGCTTTCGTTAAGGG
Found at i:130748882 original size:3 final size:3
Alignment explanation
Indices: 130748865--130748931 Score: 118
Period size: 3 Copynumber: 22.3 Consensus size: 3
130748855 TATATGCATA
130748865 AAT AACT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
130748910 AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT A
130748932 TATGCATGAC
Statistics
Matches: 62, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.03
3 57 0.92
4 3 0.05
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:130749076 original size:2 final size:2
Alignment explanation
Indices: 130749069--130749102 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
130749059 AATAGATTAA
130749069 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
130749103 GTAAAATAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:130751211 original size:133 final size:133
Alignment explanation
Indices: 130750975--130751628 Score: 986
Period size: 133 Copynumber: 4.9 Consensus size: 133
130750965 AATCTTGGGT
* *
130750975 CTACTCCACTACAACTTTAGGGAGCTAGGGTGGTGACTTAAATCTGA-TTCGCTGCAACATCAGG
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCT-ACTTCGCTGCAACATCAGG
* * * * * *
130751039 AAACCTAGATCCGTCGTCTTCGATTTGCTTCATTTCAATCTCAGGGAAACAAGATCTACAATCTT
65 AAACCTAGATTCGCCGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTT
130751104 CAAC
130 CAAC
* * * *
130751108 CTACTCCATTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAATATCAAGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTACTTCGCTGCAACATCAGGA
* * * * *
130751173 AGCCTAGATCCACTGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTT
66 AACCTAGATTCGCCGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
130751238 AAC
131 AAC
* *
130751241 CTACTCCACTACAACTTTAGGAAGCTAGGATGGTGGCTTAAATCTGCTTCGCTGCAACATCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTACTTCGCTGCAACATCAGGA
* *
130751306 AACCTAGATTCGCCGTCTTCAATCTGCTCCACTGCAATCTCAGGGAAACAAGATTTACAATCTTC
66 AACCTAGATTCGCCGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
*
130751371 AGC
131 AAC
* *
130751374 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCGCTGCAACATCAGAA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTACTTCGCTGCAACATCAGGA
* * *
130751439 AACCTAGATTCGCCGTCTTTGATCTGATCCACTACAATCTCAGGGAAACAAGATCTACAATCTTC
66 AACCTAGATTCGCCGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
*
130751504 AGC
131 AAC
* * *
130751507 CTACTCCACGACAACTTTAGGGAGCTAGGATGGTGTCTTAAATCTACTTCGATGCAACATCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTACTTCGCTGCAACATCAGGA
* * *
130751572 AACCTAGATTCGCCGTTTTCGATCTGCTCCACTGTAATCTTAGGGAAACAAGATCTA
66 AACCTAGATTCGCCGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTA
130751629 TAATTTTTAG
Statistics
Matches: 473, Mismatches: 47, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
132 1 0.00
133 472 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (133 bp):
CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTACTTCGCTGCAACATCAGGA
AACCTAGATTCGCCGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
AAC
Found at i:130751848 original size:65 final size:65
Alignment explanation
Indices: 130751744--130751868 Score: 205
Period size: 65 Copynumber: 1.9 Consensus size: 65
130751734 GTATCTATGC
*
130751744 TTATGCCAAATAATTAGGATGCTATGATTGAAATAAATCAAATGCTCCTAACTAAATGTGATGAT
1 TTATGCCAAATAATTAGGATGCTATGATCGAAATAAATCAAATGCTCCTAACTAAATGTGATGAT
* * * *
130751809 TTATGTCAAATAATTAGGATGTTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 TTATGCCAAATAATTAGGATGCTATGATCGAAATAAATCAAATGCTCCTAACTAAATGTG
130751869 TCATTATATG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 55 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (65 bp):
TTATGCCAAATAATTAGGATGCTATGATCGAAATAAATCAAATGCTCCTAACTAAATGTGATGAT
Found at i:130763522 original size:131 final size:131
Alignment explanation
Indices: 130763337--130763662 Score: 347
Period size: 131 Copynumber: 2.5 Consensus size: 131
130763327 CGAAAGCCTA
* * ** * * * **
130763337 AAGGAATATTCGATTGTTTTGAACAAGCGAGAAATCACAATCCAACATGATAGGGCATGATTCC-
1 AAGGAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGTTAGGGCACAATTCCA
** ** * *
130763401 CG-GATTGTCAAACACCG-AGTATTATCTTCGTTTTAATGGATTTTTAAAAGACCTGAGTGAAAT
66 CGAG-TTACCAAACACCGCA-TACCATCTTCG-TTTAAGGGATTTTTAAAAGACATGAGTGAAAT
130763464 TTTG
128 TTTG
* * *
130763468 AAGGAATATTTGATTATTTTAAACAAACGGGAAATTGCAACCCAACACGTTAGGGCACAATTCCA
1 AAGGAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGTTAGGGCACAATTCCA
* * * * * *
130763533 CGAGTTACCAAATATCGCATACCGTTTTCGTTTAAGGGATTTTTAAAAGATATGAGTGATATTTT
66 CGAGTTACCAAACACCGCATACCATCTTCGTTTAAGGGATTTTTAAAAGACATGAGTGAAATTTT
130763598 G
131 G
*
130763599 AAGTG-ATATTCGATTATTTTGAGCAAAC-ACGAAATTGCAACCCAACACGTTAGGGCACAATTC
1 AAG-GAATATTCGATTATTTTGAACAAACGA-GAAATTGCAACCCAACACGTTAGGGCACAATTC
130763662 C
64 C
130763663 GCGAATTGCC
Statistics
Matches: 162, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
131 141 0.87
132 19 0.12
133 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.30
Consensus pattern (131 bp):
AAGGAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGTTAGGGCACAATTCCA
CGAGTTACCAAACACCGCATACCATCTTCGTTTAAGGGATTTTTAAAAGACATGAGTGAAATTTT
G
Found at i:130763675 original size:131 final size:132
Alignment explanation
Indices: 130763427--130763679 Score: 375
Period size: 131 Copynumber: 1.9 Consensus size: 132
130763417 GAGTATTATC
* * *
130763427 TTCGTTTTAATGGATTTTTAAAAGACCTGAGTGAAATTTTGAAGGAATATTTGATTATTTTAAAC
1 TTCGTTTTAAGGGATTTTTAAAAGACATGAGTGAAATTTTGAAGGAATATTCGATTATTTTAAAC
** *
130763492 AAACGGGAAATTGCAACCCAACACGTTAGGGCACAATTCCACGAGTTACCAAATATCGCATACCG
66 AAACACGAAATTGCAACCCAACACGTTAGGGCACAATTCCACGAATTACCAAATATCGCATACCG
130763557 TT
131 TT
* * * *
130763559 TTCG-TTTAAGGGATTTTTAAAAGATATGAGTGATATTTTGAAGTG-ATATTCGATTATTTTGAG
1 TTCGTTTTAAGGGATTTTTAAAAGACATGAGTGAAATTTTGAAG-GAATATTCGATTATTTTAAA
* *
130763622 CAAACACGAAATTGCAACCCAACACGTTAGGGCACAATTCCGCGAATTGCCAAATATC
65 CAAACACGAAATTGCAACCCAACACGTTAGGGCACAATTCCACGAATTACCAAATATC
130763680 AAATCTCGCC
Statistics
Matches: 108, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
131 103 0.95
132 5 0.05
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.31
Consensus pattern (132 bp):
TTCGTTTTAAGGGATTTTTAAAAGACATGAGTGAAATTTTGAAGGAATATTCGATTATTTTAAAC
AAACACGAAATTGCAACCCAACACGTTAGGGCACAATTCCACGAATTACCAAATATCGCATACCG
TT
Found at i:130764375 original size:3 final size:3
Alignment explanation
Indices: 130764358--130764390 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
130764348 TATATGCATA
130764358 AAT AACT AA- AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT
130764391 TTGTAAAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 23 0.82
4 3 0.11
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:130766136 original size:13 final size:14
Alignment explanation
Indices: 130766108--130766137 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
130766098 GGTATACATA
130766108 TTTTTTTTTGTGAT
1 TTTTTTTTTGTGAT
130766122 TTTTTTTTTGT-AT
1 TTTTTTTTTGTGAT
130766135 TTT
1 TTT
130766138 CGTTTTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.07, C:0.00, G:0.10, T:0.83
Consensus pattern (14 bp):
TTTTTTTTTGTGAT
Found at i:130767923 original size:51 final size:51
Alignment explanation
Indices: 130767847--130767966 Score: 186
Period size: 51 Copynumber: 2.4 Consensus size: 51
130767837 CTCAAACTTA
* *
130767847 CTTCATACTTCATCCGGAATTATTACCTTGTTGCTCTAACTTCAACAAGAG
1 CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
* * *
130767898 CTTCATATTTCATCCGGAATAATTACTTTGTTGCTCTAGCTTTAACAAGAG
1 CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
*
130767949 CTTCATATTTTATCCGGA
1 CTTCATATTTCATCCGGA
130767967 TAACTTAGTT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.38
Consensus pattern (51 bp):
CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
Found at i:130773096 original size:30 final size:30
Alignment explanation
Indices: 130773060--130773158 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
130773050 CTAGCCTTTG
*
130773060 CCACCACCAACTCCACTAGTCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
130773090 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* * *
130773120 CTACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
130773150 CCACCACCA
1 CCACCACCA
130773159 CTTGTACCTA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.26, C:0.48, G:0.06, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:130773490 original size:17 final size:17
Alignment explanation
Indices: 130773468--130773503 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
130773458 TCTTTTATAC
130773468 GAAAGTAAAAATAAAAG
1 GAAAGTAAAAATAAAAG
130773485 GAAAGTAAAAATAAAAG
1 GAAAGTAAAAATAAAAG
130773502 GA
1 GA
130773504 GGAAGCTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.19, T:0.11
Consensus pattern (17 bp):
GAAAGTAAAAATAAAAG
Found at i:130773762 original size:23 final size:23
Alignment explanation
Indices: 130773736--130773779 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
130773726 ACGTATATAT
*
130773736 ATATATATT-ATACTATTTTATGA
1 ATATAT-TTAATACTATATTATGA
*
130773759 ATATCTTTAATACTATATTAT
1 ATATATTTAATACTATATTAT
130773780 TTATATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 16 0.89
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (23 bp):
ATATATTTAATACTATATTATGA
Found at i:130773825 original size:22 final size:22
Alignment explanation
Indices: 130773800--130773866 Score: 71
Period size: 25 Copynumber: 2.9 Consensus size: 22
130773790 TTTCTACATG
*
130773800 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
130773822 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTA-A
* *
130773847 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
130773867 TAATATTATC
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 11 0.30
23 6 0.16
24 8 0.22
25 12 0.32
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:130773856 original size:25 final size:24
Alignment explanation
Indices: 130773806--130773892 Score: 70
Period size: 24 Copynumber: 3.5 Consensus size: 24
130773796 CATGTTATCT
*
130773806 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
130773832 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-ACTATATTATG
** * *
130773857 TACATA-TTTTTAA-TATTATCACG
1 TATGTATTTTTTAACTA-TATTATG
*
130773880 TATTTATTTTTTA
1 TATGTATTTTTTA
130773893 TATATTTACA
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
22 2 0.04
23 10 0.20
24 17 0.33
25 15 0.29
26 7 0.14
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:130773906 original size:23 final size:24
Alignment explanation
Indices: 130773863--130773909 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
130773853 TATGTACATA
*
130773863 TTTTTAATATTATCACGTATTTAT
1 TTTTTAATATTATCACATATTTAT
130773887 TTTTTATATATT-T-ACATATTTAT
1 TTTTTA-ATATTATCACATATTTAT
130773910 GTAGTATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 9 0.43
24 7 0.33
25 5 0.24
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (24 bp):
TTTTTAATATTATCACATATTTAT
Found at i:130774046 original size:16 final size:15
Alignment explanation
Indices: 130774022--130774069 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
130774012 TAATTATTAT
*
130774022 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
130774038 TATTTTAATATTTTA
1 TATTTTAATATTTTA
*
130774053 TATTTTATATACTTTA
1 TATTTTA-ATATTTTA
130774069 T
1 T
130774070 TATTCACATC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 8 0.28
16 21 0.72
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:130774057 original size:7 final size:8
Alignment explanation
Indices: 130774022--130774073 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
130774012 TAATTATTAT
*
130774022 TATTCTAA
1 TATTTTAA
*
130774030 TATTTTGA
1 TATTTTAA
130774038 TATTTTAA
1 TATTTTAA
130774046 TATTTT-A
1 TATTTTAA
130774053 TATTTTATA
1 TATTTTA-A
* *
130774062 TACTTTAT
1 TATTTTAA
130774070 TATT
1 TATT
130774074 CACATCACTA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 7 0.19
8 22 0.61
9 7 0.19
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (8 bp):
TATTTTAA
Found at i:130781047 original size:85 final size:81
Alignment explanation
Indices: 130780951--130782005 Score: 447
Period size: 73 Copynumber: 13.5 Consensus size: 81
130780941 CTGTTTTCAA
* * *
130780951 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGA-GTCACTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCGCAC-TGCTGAGGT-ACTTTCAA-
130781015 TTTTGTTTTTATGTTTGTTTT
63 --TTGTTTTTATGTTTGTTTT
** * * *
130781036 TTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGGGCA-TGCTGAGGTATTTTCAATTG
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCGCACTGCTGAGGTACTTTCAATTG
* *
130781100 -----CTGTTTG--TC
66 TTTTTATGTTTGTTTT
* * * *
130781109 AAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCGGGGCAC-GCCGAGGTATTTTCAA---
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCGCACTGCTGAGGTACTTTCAATTG
* * * ***
130781170 ATTCTA--CTT-TCAA
66 TTTTTATGTTTGTTTT
* * * *
130781183 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATTGGCTCACGTGTTGA-GTCACTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCGCAC-TGCTGAGGT-ACTTTCAA-
*
130781247 TTCTGTTTTTATGTCTGTTTT
63 -T-TGTTTTTATGTTTGTTTT
** * * * *
130781268 TTAAATCAACTCATATTGCGGGAGGTGAGTTGAGTCTCGGGGCAC-GCTGAGGTATTTTCAATTG
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCGCACTGCTGAGGTACTTTCAATTG
* *
130781332 ---CTA--TTTG--TC
66 TTTTTATGTTTGTTTT
* * *
130781341 AAAAATCAACTCATGTTGCGGGAGGTGAGTTGAGCCTCGG-GTCACATG-TCGAGGTATTTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCG-CAC-TGCT-GAGGTACTTTCAA
* * *
130781404 -----TTTCTG-CT-TTTC
63 TTGTTTTTATGTTTGTTTT
* * *
130781416 AAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-ACA-TGCTGAGGTAATTGCAA--
1 AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCGCACTGCTGAGGTACTTTCAATT
* ***
130781477 ---TTTAT-ATTGTCAA
65 GTTTTTATGTTTGTTTT
* * *
130781490 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCGCAC-TGCTGAGGTACTTTCAATT
* *
130781555 -TCTGTCTCTGTTTG---T
65 GT-T-TTTATGTTTGTTTT
* *
130781570 CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-GCAC-GCTGAGGTATTTTCAA--
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCGCACTGCTGAGGTACTTTCAATT
* ***
130781631 ---TTTCTGTTTGTCAA
65 GTTTTTATGTTTGTTTT
* * * * *
130781645 AAAAACCAACTCATATTGTGAGAAGTGACTTGAGCCTCAGG-GCAC-GCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCGCACTGCTGAGGTACTTTCAATT
* *
130781708 -TCTGTT-TG-TT-TTTA
65 GT-TTTTATGTTTGTTTT
* * *
130781722 AAAAAACAAACTCATATTGCAAGAGGTGAGTTGAGCCTCGG-GTCA-TACGCTGAGGTATTTTTC
1 AAAAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCG-CACT--GCTGAGGTA-CTTTC
* **
130781785 ATTTCTGTTCTTTAAT-TTCTACGGTTCAA
61 A-AT-TGTT-TTT-ATGTT-T---GTT-TT
* * * * *
130781814 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTTGACTGACAC-GTTGAGGTATTTTCAA-
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC-G-CACTGCTGAGGTACTTTCAAT
* ***
130781877 ----TTTCTGCTTT-TCAA
64 TGTTTTTATG-TTTGTTTT
* *
130781891 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC-GCTGAGGTAATTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCGCACTGCTGAGGTACTTTCAATT
* * * ******
130781954 -TCTGTCT-TTCAAAAA
65 GTTTTTATGTTTGTTTT
130781969 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
130782006 TGGGACACGC
Statistics
Matches: 773, Mismatches: 113, Indels: 175
0.73 0.11 0.16
Matches are distributed among these distances:
72 10 0.01
73 153 0.20
74 49 0.06
75 105 0.14
76 60 0.08
77 53 0.07
78 88 0.11
79 6 0.01
80 55 0.07
81 10 0.01
82 12 0.02
83 30 0.04
84 8 0.01
85 76 0.10
86 2 0.00
87 1 0.00
90 6 0.01
91 39 0.05
92 7 0.01
93 3 0.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.33
Consensus pattern (81 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCGCACTGCTGAGGTACTTTCAATTG
TTTTTATGTTTGTTTT
Found at i:130781161 original size:73 final size:73
Alignment explanation
Indices: 130781038--130781793 Score: 718
Period size: 73 Copynumber: 9.9 Consensus size: 73
130781028 TTTGTTTTTT
* * *
130781038 AAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGGGCATGCTGAGGTATTTTCAATTGCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTCTG
130781103 TTTGTCAA
66 TTTGTCAA
* * * *
130781111 AAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTCTG
*
130781176 CTT-TCAAAA
66 TTTGTC--AA
* * ** * *
130781185 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCATTGGCTCACG-TGTTGAGTCACTTTCAATTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTG-AG-GT-ATTTTCAATTT
**
130781249 CTGTTTTTATGTCTGTTTTTT
63 CTG---TT-TGTC------AA
* * * *
130781270 AAATCAACTCATATTGCGGGAGGTGAGTTGAGTCTCGGGGCACGCTGAGGTATTTTCAATTGCTA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTCTG
130781335 TTTGTCAA
66 TTTGTCAA
* * *
130781343 AAATCAACTCATGTTGCGGGAGGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCAATTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC--GCT-GAGGTATTTTCAATTT
130781407 CTGCTTT-TCAA
63 CTG-TTTGTCAA
* * * * *
130781418 AGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACATGCTGAGGTAATTGCAATTTAT
1 A-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTCT
*
130781482 -ATTGTCAAAA
65 GTTTGTC--AA
* **
130781492 AAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC--GCTGAGGTATTTTCAA----
130781557 TGTCTCTGTTTGTC-A
60 T-T-TCTGTTTGTCAA
*
130781572 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTCTG
130781637 TTTGTCAAAA
66 TTTGTC--AA
* * * * *
130781647 AAACCAACTCATATTGTGAGAAGTGACTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTCTG
*
130781712 TTTGTTTTTAAA
66 TTTG----TCAA
* * *
130781724 AAAACAAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCATACGCTGAGGTATTTTTC-ATT
1 AAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGC--ACGCTGAGGTA-TTTTCAATT
130781788 TCTGTT
62 TCTGTT
130781794 CTTTAATTTC
Statistics
Matches: 566, Mismatches: 72, Indels: 83
0.79 0.10 0.12
Matches are distributed among these distances:
71 2 0.00
72 14 0.02
73 152 0.27
74 51 0.09
75 95 0.17
76 61 0.11
77 6 0.01
78 46 0.08
79 6 0.01
80 64 0.11
81 8 0.01
82 2 0.00
83 16 0.03
84 2 0.00
85 39 0.07
86 2 0.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (73 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTCTG
TTTGTCAA
Found at i:130781351 original size:232 final size:230
Alignment explanation
Indices: 130780933--130782147 Score: 979
Period size: 232 Copynumber: 5.2 Consensus size: 230
130780923 TATGTGGATG
*
130780933 TTTC-ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
1 TTTCAATTTCTGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
130780997 TGTTGAGTCACTTTCAATTTTTGTTTTTATGTTTGTTTTTTAAATCAACTCATATTGCGGGAGGT
66 TGTTGAGTCACTTTCAA-TTTTGTTTTTATG-TTGTTTTTTAAATCAACTCATATTGCGGGAGGT
*
130781062 GAGTTGAGCCTCGGGGCATGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATGTTG
129 GAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATGTTG
130781127 CGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTAT
194 CGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTAT
* * *
130781164 TTTCAAATTCTACTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATTGGCTCACG
1 TTTCAATTTCTGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
130781229 TGTTGAGTCACTTTCAATTTCTGTTTTTATGTCTGTTTTTTAAATCAACTCATATTGCGGGAGGT
66 TGTTGAGTCACTTTCAATTT-TGTTTTTATGT-TGTTTTTTAAATCAACTCATATTGCGGGAGGT
* *
130781294 GAGTTGAGTCTCGGGGCACGCTGAGGTATTTTCAATTGCTATTTGTCAAAAATCAACTCATGTTG
129 GAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATGTTG
* * *
130781359 CGGGAGGTGAGTTGAGCCTCGGGTCACATGTCGAGGTAT
194 CGAGAGGTGAGTTGAGCCTCGGGGCAC--GCCGAGGTAT
* *
130781398 TTTCAATTTCTGCTTTTC-AAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---AC
1 TTTCAATTTCTGC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC
* * * * * ***** **
130781459 ATGCTGAGGT-AATTGCAA-------TTTATATTGTCAAAAAAATCAACTCATATTGCAAGAGGT
65 GTGTTGA-GTCACTTTCAATTTTGTTTTTATGTTGTTTTTTAAATCAACTCATATTGCGGGAGGT
**
130781516 GAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAATTTCTGTCTCTGTTTGTC-AAAATCAAC
129 GAGTTGAGCCTCGGGGCAC--GCTGAGGTATTTTCAA--T-TG---CTGTTTGTCAAAAATCAAC
* * *
130781580 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAT
186 TCATGTTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTAT
* * * * * * *
130781625 TTTCAATTTCTGTTTGTCAAAAAAACCAACTCATATTGTGAGAAGTGACTTGAGCCTCAGG-GCA
1 TTTCAATTTCTGCTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCA
* * *** * **
130781689 C--GCTGAGGT-ATTTTCAATTTCTG---TT-TGTT-TTTAAAAAAACAAACTCATATTGCAAGA
64 CGTGTTGA-GTCACTTTCAATTT-TGTTTTTATGTTGTTTTTTAAATC-AACTCATATTGCGGGA
* * *
130781746 GGTGAGTTGAGCCTCGGGTCATACGCTGAGGTATTTTTCATTTCTGTTCTTTAATTTCTACGGTT
126 GGTGAGTTGAGCCTCGGGGC--ACGCTGAGGTA-TTTTCA-AT-TG--C--T--GTT-T---G-T
* * * * * **
130781811 CAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTTGACTGACACGTTGAGGTAT
175 C--AAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCG--GGGCACGCCGAGGTAT
* *
130781871 TTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACA
1 TTTCAATTTCTGC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCA
* * * ****** *
130781935 C--GCTGAGGT-AATTTCAATTTCTGTCTTTCA-----AAAAAAAAATCAACTCATATTGCGAGA
64 CGTGTTGA-GTCACTTTCAATTT-TGT-TTTTATGTTGTTTTTTAAATCAACTCATATTGCGGGA
* * * * * **
130781992 GGTGAGTTGAGCCTTGGGACACGCTGAGATAATTTT-TATTTCTG-TT-TCAAAGTTCAACTCAT
126 GGTGAGTTGAGCCTCGGGGCACGCTGAGGT-ATTTTCAATTGCTGTTTGTCAAAAATCAACTCAT
** * * ** * **
130782054 ACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAT
190 GTTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTAT
* * * *
130782095 TTTCAATTTCTGTCTTTCAAAAAAATTAGCTCATATTGCAAGAAGTGAGTTGA
1 TTTCAATTTCTG-CTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
130782148 ACCTCAAGAC
Statistics
Matches: 838, Mismatches: 93, Indels: 113
0.80 0.09 0.11
Matches are distributed among these distances:
222 41 0.05
223 6 0.01
224 78 0.09
225 1 0.00
226 34 0.04
227 24 0.03
228 35 0.04
229 56 0.07
230 8 0.01
231 23 0.03
232 214 0.26
233 52 0.06
234 68 0.08
235 6 0.01
236 2 0.00
237 2 0.00
239 1 0.00
240 1 0.00
241 3 0.00
242 1 0.00
244 48 0.06
245 1 0.00
246 123 0.15
247 9 0.01
250 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (230 bp):
TTTCAATTTCTGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
TGTTGAGTCACTTTCAATTTTGTTTTTATGTTGTTTTTTAAATCAACTCATATTGCGGGAGGTGA
GTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATGTTGCG
AGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTAT
Found at i:130781544 original size:149 final size:149
Alignment explanation
Indices: 130781270--130782152 Score: 791
Period size: 149 Copynumber: 5.7 Consensus size: 149
130781260 TCTGTTTTTT
* * * * * *
130781270 AAATCAACTCATATTGCGGGAGGTGAGTTGAGTCTCGGGGCACGCTGAGGTATTTTCAATTGCTA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTA
* * *
130781335 TTTGTC--AAAAATCAACTCATGTTGCGGGAGGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTA
66 -TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCAC-TGCT-GAGGTA
130781397 TTTTCAATTTCTGCTTTTCAAA
128 TTTTCAATTTCTGCTTTTCAAA
* * * *
130781419 GAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACATGCTGAGGTAATTGCAATTTATA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTA
*
130781483 TTGTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATT
66 TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCAC-TGCTGAGGTATT
***
130781548 TTCAATTTCTGTCTCTGTTTGTCA
130 TTCAATTTCTG---CT-TTTCAAA
* *
130781572 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT-
* * * * * *
130781637 TTTGTCAAAAAAACCAACTCATATTGTGAGAAGTGACTTGAGCCTCAGG-GCAC-GCTGAGGTAT
65 ATTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACTGCTGAGGTAT
* *
130781700 TTTCAATTTCTGTTTGTTTTTAAA
129 TTTCAATTTCTG---CTTTTCAAA
* * * *
130781724 AAAACAAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCATACGCTGAGGTATTTTTCATTT
1 AAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTA------A---
** * * *
130781789 CTGTTCTTTAATTTCTACGGTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTTGA
54 -T-TTC---AATTTCTATTG-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
*
130781854 CTGACAC-GTTGAGGTATTTTCAATTTCTGCTTTTCAAAA
113 CT--CACTGCTGAGGTATTTTCAATTTCTGCTTTTC-AAA
*
130781893 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTA
* * ** *
130781958 TCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACAC-GCTGAGAT
66 T-TGTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACTGCTGAGGT
*
130782022 AATTTT-TATTTCTG--TTTC-AA
127 -ATTTTCAATTTCTGCTTTTCAAA
** * * * * * * *
130782042 AGTTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTA
* * * * * *
130782107 TCTTTCAAAAAAATTAGCTCATATTGCAAGAAGTGAGTTGAACCTC
66 T-TGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
130782153 AAGACGCTGA
Statistics
Matches: 613, Mismatches: 84, Indels: 77
0.79 0.11 0.10
Matches are distributed among these distances:
146 34 0.06
147 5 0.01
148 22 0.04
149 160 0.26
150 1 0.00
151 4 0.01
152 19 0.03
153 112 0.18
154 27 0.04
155 97 0.16
156 3 0.00
160 1 0.00
165 1 0.00
166 15 0.02
168 38 0.06
169 50 0.08
171 24 0.04
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.32
Consensus pattern (149 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTA
TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACTGCTGAGGTATTT
TCAATTTCTGCTTTTCAAA
Found at i:130781953 original size:75 final size:75
Alignment explanation
Indices: 130781809--130782165 Score: 395
Period size: 78 Copynumber: 4.8 Consensus size: 75
130781799 ATTTCTACGG
* * * * *
130781809 TTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTTGACTGACACGTTGAGGTATTTT
1 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GGACACGCTGAGGTAATTT
130781874 CAATTTCTG-CTT
64 CAATTTCTGTC-T
130781886 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
1 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
130781951 ATTTCTGTCT
66 ATTTCTGTCT
** *
130781961 TTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGATAATT
1 TTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
**
130782026 TTTATTTCTG--T
63 TCAATTTCTGTCT
** * * * * * *
130782037 TTC--AAAGTTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
1 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
130782100 ATTTCTGTCT
66 ATTTCTGTCT
* * * * * *
130782110 TTCAAAAAAATTAGCTCATATTGCAAGAAGTGAGTTGAACCTCA--AGACGCTGAGGT
1 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
130782166 GTTTTCCATT
Statistics
Matches: 241, Mismatches: 31, Indels: 20
0.83 0.11 0.07
Matches are distributed among these distances:
71 54 0.22
73 14 0.06
75 62 0.26
76 7 0.03
77 40 0.17
78 64 0.27
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (75 bp):
TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
ATTTCTGTCT
Found at i:130782003 original size:246 final size:232
Alignment explanation
Indices: 130781270--130782165 Score: 868
Period size: 246 Copynumber: 3.9 Consensus size: 232
130781260 TCTGTTTTTT
** * * *
130781270 AAATCAACTCATATTGCGGGAGGTGAGTTGAGTCTCGGG--GCACGCTGAGGTA-TTTTCA-AT-
1 AAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTTCATTTC
* * * * * * * *
130781330 TG----CTATTTGTCAAAAATCAACTCATGTTGCGGGAGGTGAGTTGAGCCTCGGGTCACATGTC
66 TGTTCTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGATGACACGTT
*
130781391 GAGGTATTTTCAATTTCTGCTTTTC-AAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
130 GAGGTATTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * * * *
130781455 -GGACATGCTGAGGTAATTGCAATTTATATTGTCAAAA
195 AGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAA
* **
130781492 AAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTA-TTTTCAATTT
1 AAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTTC-ATTT
* * * *
130781556 CTG-TCTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCAGGGCACGCT
65 CTGTTCTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGATGACACGTT
* * * *
130781618 GAGGTATTTTCAATTTCTG-TTTGTCAAAAAAACCAACTCATATTGTGAGAAGTGACTTGAGCCT
130 GAGGTATTTTCAATTTCTGCTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* * *
130781682 CAGGGCACGCTGAGGTATTTTCAATTTCTGTTTGTTTTTAAAA
194 CAGGACACGCTGAGGTAATTTCAATTTC----TGTTTTCAAAA
*
130781725 AAA-CAAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCATACGCTGAGGTATTTTTCATTT
1 AAATC-AACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTTCATTT
* * *
130781789 CTGTTCTTTAATTTCTACGGTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTTGA
65 CTGTTCTCT--GTT-T---G-TC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGA
130781854 CTGACACGTTGAGGTATTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGA
121 -TGACACGTTGAGGTATTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGA
130781919 GTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTCTTTCAAAAAAA
185 GTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT-TTTC---AAAA
* * *
130781971 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGG--ACACGCTGAGATAATTTTT-A---
1 AAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGT-ATTTTTCATTT
** * * * * *
130782030 ---TT-TCTG-TT-TCAAAGTTCAACTCATACTGCAAGAAGTGAGTTGAGCC-TCAAGACACGTT
65 CTGTTCTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGATGACACGTT
* * * * *
130782088 GAGGTATTTTCAATTTCTG-TCTTTCAAAAAAATTAGCTCATATTGCAAGAAGTGAGTTGAACCT
130 GAGGTATTTTCAATTTCTGCT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
130782152 CA--AGACGCTGAGGT
194 CAGGACACGCTGAGGT
130782166 GTTTTCCATT
Statistics
Matches: 565, Mismatches: 71, Indels: 76
0.79 0.10 0.11
Matches are distributed among these distances:
222 46 0.08
223 1 0.00
224 82 0.15
225 3 0.01
226 34 0.06
227 26 0.05
228 36 0.06
229 54 0.10
230 8 0.01
232 1 0.00
233 64 0.11
234 10 0.02
236 2 0.00
237 3 0.01
238 2 0.00
240 1 0.00
241 2 0.00
242 3 0.01
243 3 0.01
244 45 0.08
245 8 0.01
246 127 0.22
247 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (232 bp):
AAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTTCATTTC
TGTTCTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGATGACACGTTG
AGGTATTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
GGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAA
Found at i:130782311 original size:90 final size:88
Alignment explanation
Indices: 130782094--130782597 Score: 362
Period size: 87 Copynumber: 5.7 Consensus size: 88
130782084 CGTTGAGGTA
* * * * * * *
130782094 TTTTCAATTTCTGTCTTTCAAAAAAATTAGCTCATATTGCAAGAAGTGAGTTGAACCTCA----A
1 TTTTCAATTTATGT-TTT-TAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCA
* * *
130782155 GACGCTGAGGTGTTTTCCATTTTTGT
64 CACGCTGAGGTATTTTCAATTTTT-T
* * * * * * *
130782181 TCTTCAATTTCTGTGTTTCAAAAAAATTAGCTCATATTGCGAGTGGTGAGTTGAGCCT-TGACTC
1 TTTTCAATTTATGT-TTT-TAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-CTC
130782245 ACACGCTGAGGTATTTTCAATTTTTT
63 ACACGCTGAGGTATTTTCAATTTTTT
* *
130782271 TTTTCAATTTATGTTTGTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCA
1 TTTTCAATTTATGTTT-TT-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCA
*
130782336 CACGCCGAGGTATTTTCAATTGATGTTTTT
64 CACGCTGAGGTATTTTC-A---AT-TTTTT
* ** * *
130782366 TTTTCAATTTATGCTTTGCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCACA
1 TTTTCAATTTATGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACA
** * * * *
130782431 TACCGAGGTATTTTCAAAATCTGT
66 CGCTGAGGTATTTTC-AATTTTTT
* * **
130782455 TTTACAAATTT-TG-TTTT-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCAC
1 TTTTC-AATTTATGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCAC
** * * * *
130782517 GTGCTGAGTTATGTTCAATTTCTA
65 ACGCTGAGGTATTTTCAATTTTTT
* * * * * * **
130782541 TTTT-AATGTCTATTTTTAAAGAGTCAATTCATATTGCGAGAAATGAGTTGAG-CTCAG
1 TTTTCAATTTATGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
130782598 GATCACATGC
Statistics
Matches: 344, Mismatches: 56, Indels: 35
0.79 0.13 0.08
Matches are distributed among these distances:
84 4 0.01
85 1 0.00
86 13 0.04
87 133 0.39
88 3 0.01
89 11 0.03
90 73 0.21
91 24 0.07
93 59 0.17
94 3 0.01
95 20 0.06
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.38
Consensus pattern (88 bp):
TTTTCAATTTATGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACA
CGCTGAGGTATTTTCAATTTTTT
Found at i:130782508 original size:87 final size:91
Alignment explanation
Indices: 130782202--130782508 Score: 301
Period size: 90 Copynumber: 3.4 Consensus size: 91
130782192 TGTGTTTCAA
* * * * * * *
130782202 AAAAATTAGCTCATATTGCGAGTGGTGAGTTGAGCCT-TGACTCACACGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GTCACACACCGAGGTATTTTCAAT
* * *
130782266 -T-T-TTTTTTTCAATTTATG-TTTGTTAA
65 ATATCTGTTTTACAATTTATGCTTTG---C
* *
130782292 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGTATTTTCAA-T
* * * *
130782357 GATGTTTTTTTTTCAATTTATGCTTTGC
65 -ATATCTGTTTTACAATTTATGCTTTGC
* *
130782385 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCACATACCGAGGTATTTTCAA-A
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGTATTTTCAATA
*
130782449 -ATCTGTTTTACAAATTT-TG-TTT-T
66 TATCTGTTTTAC-AATTTATGCTTTGC
*
130782472 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
130782509 TGGCTCACGT
Statistics
Matches: 190, Mismatches: 19, Indels: 19
0.83 0.08 0.08
Matches are distributed among these distances:
87 35 0.18
88 3 0.02
89 9 0.05
90 60 0.32
91 2 0.01
93 60 0.32
94 1 0.01
95 16 0.08
96 4 0.02
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (91 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGTATTTTCAATA
TATCTGTTTTACAATTTATGCTTTGC
Found at i:130784414 original size:39 final size:39
Alignment explanation
Indices: 130784316--130784414 Score: 103
Period size: 39 Copynumber: 2.6 Consensus size: 39
130784306 TATGGTATTT
* * * *
130784316 AAATATATATAT-ATATATATGTATACAATAGTATTTAA
1 AAATATATACATAATATATATATATACAATAGCATTAAA
* * * *
130784354 GAATATATACATAAGAAATATATA-ACTAATGGCATTAAA
1 AAATATATACATAATATATATATATAC-AATAGCATTAAA
130784393 AAATATATACATAATATATATA
1 AAATATATACATAATATATATA
130784415 AAATACCTAA
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
38 12 0.25
39 36 0.75
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.35
Consensus pattern (39 bp):
AAATATATACATAATATATATATATACAATAGCATTAAA
Found at i:130784526 original size:17 final size:17
Alignment explanation
Indices: 130784494--130784527 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
130784484 GGTCACCGGT
* *
130784494 CGTCGTCGGTCGCCGCC
1 CGTCGTCGGCCACCGCC
130784511 CGTCGTCGGCCACCGCC
1 CGTCGTCGGCCACCGCC
130784528 GGCCACCGCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.50, G:0.32, T:0.15
Consensus pattern (17 bp):
CGTCGTCGGCCACCGCC
Found at i:130784953 original size:41 final size:41
Alignment explanation
Indices: 130784908--130784994 Score: 108
Period size: 41 Copynumber: 2.1 Consensus size: 41
130784898 TAGGTTTTTC
130784908 TTTTTCTTCTTT-TTTTTTT-TGGGTTAGTTTTTTTGGG-TAGG
1 TTTTTCTT-TTTCTTTTTTTCTGGGTT--TTTTTTTGGGTTAGG
**
130784949 TTTTTCTTTTTCTTTTTTTCTTTGTTTTTTTTTGGGTTAGG
1 TTTTTCTTTTTCTTTTTTTCTGGGTTTTTTTTTGGGTTAGG
130784990 TTTTT
1 TTTTT
130784995 TTGGGGGGCT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
40 13 0.32
41 24 0.59
42 4 0.10
ACGTcount: A:0.03, C:0.06, G:0.17, T:0.74
Consensus pattern (41 bp):
TTTTTCTTTTTCTTTTTTTCTGGGTTTTTTTTTGGGTTAGG
Found at i:130784966 original size:14 final size:14
Alignment explanation
Indices: 130784949--130784981 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
130784939 TTTGGGTAGG
130784949 TTTTTCTTT-TTCTT
1 TTTTTCTTTGTT-TT
130784963 TTTTTCTTTGTTTT
1 TTTTTCTTTGTTTT
130784977 TTTTT
1 TTTTT
130784982 GGGTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 16 0.89
15 2 0.11
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (14 bp):
TTTTTCTTTGTTTT
Found at i:130785684 original size:88 final size:83
Alignment explanation
Indices: 130785577--130786800 Score: 300
Period size: 88 Copynumber: 14.9 Consensus size: 83
130785567 AACAGACATT
** * *
130785577 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
130785642 TTGATTTTTTGAAACTTAACTTG
65 TTGATTTTTTGAAA---AAC-TG
* * * ** *
130785665 AAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
*
130785729 GTTGA-TTTTTGAAAAACAG
64 GTTGATTTTTTGAAAAACTG
* * * * ** *** *
130785748 AAATTAAAAGA--CT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAAT
1 AAA--AACAGATTTTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAAT
130785809 ATGAGTTGAATTTTTTTG-AAAA---
60 ATGAGTTG-A-TTTTTTGAAAAACTG
** * *
130785831 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
130785896 TTGA-TTTTTGAAAACAGAATTTG
65 TTGATTTTTTG--AA-A-AA-CTG
* * * * * *
130785919 AAAAACAGATTTTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
130785984 TTGATTTTTTTGAAAAA-T-
65 TTGA-TTTTTTGAAAAACTG
* *** *** * *
130786002 --ATA-A-ATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
130786062 GTTGATTTTTTTG--AAA--G
64 GTTGA-TTTTTTGAAAAACTG
* * * * * * *
130786079 ATAGA-A-A--TTGAAAATAGCTCAGCGCATGAGCCAAGGGTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
130786140 TTGATTTTTTG-AAAAC--
65 TTGATTTTTTGAAAAACTG
* * * ** **
130786156 --AGA-A-A--TTGAAAATACCTC-AACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTCGCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAG
*
130786213 TTGA-ATTTTG-AAAAC--
65 TTGATTTTTTGAAAAACTG
* * ** *
130786228 --AGA-A-A--TTGAAATTACCT--CAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTCGCA-CGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
130786285 TTGATTTTTTTTTTGAAAGGCAGAAATTG
65 TTGA----TTTTTTG--A---A-AAACTG
** ** * ** *
130786314 AAAAATGGAAATTGAAAATACCTCG-ACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGA
1 AAAAACAGATTTTGAAAATACCTCGCAC--GTGAGCCAAGGCTCAACTCACCTCTCGCAATATGA
130786378 GTTGACTTTTTTG----AC--
64 GTTGA-TTTTTTGAAAAACTG
** * * *
130786393 ---AACAGAAATTGAAATTACCT--CAGCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCGCA-CGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGA
*
130786452 GTTGATTTTTTTGAAAGGCAAAAATTG
64 GTTGA-TTTTTT-----G-AAAAACTG
* ** * * * * * *
130786479 AAAAACGGAAATTGAAAATACCTCG-GCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGA
1 AAAAACAGATTTTGAAAATACCTCGCACGTGAG-CC-AAGGCTCAACTCACCTCTCGCAATATGA
130786543 GTTGATTTTTT-------TG
64 GTTGATTTTTTGAAAAACTG
* ** * *
130786556 -ACAACAGAAATTGAAATTACCT--CAGCGTG-TCCTAAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCGCA-CGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGA
** *
130786617 GTTTTTTTTTTGAAAGACAGAAATTG
64 GTTGATTTTTT----GA-A-AAACTG
* ** * * * * *
130786643 AAAAACGGAAATT-AAAATACCTCG-GCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGA
1 AAAAACAGATTTTGAAAATACCTCGCACGTGAG-CC-AAGGCTCAACTCACCTCTCGCAATATGA
* * * *
130786706 GTTGATTCTTTAAAACATAATA
64 GTTGATTTTTTGAAA-A-ACTG
** * *
130786728 ATGAAAACAGAAATTGAAAATACCTCG-GCGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATG
1 A--AAAACAGATTTTGAAAATACCTCGCACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATG
*
130786791 AGCTGATTTT
63 AGTTGATTTT
130786801 GAAAAAGTAG
Statistics
Matches: 882, Mismatches: 143, Indels: 224
0.71 0.11 0.18
Matches are distributed among these distances:
71 1 0.00
72 62 0.07
73 34 0.04
74 77 0.09
75 18 0.02
76 50 0.06
77 57 0.06
79 65 0.07
80 3 0.00
81 12 0.01
82 38 0.04
83 16 0.02
84 47 0.05
85 13 0.01
86 42 0.05
87 44 0.05
88 143 0.16
89 58 0.07
90 13 0.01
91 40 0.05
92 12 0.01
93 1 0.00
94 36 0.04
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (83 bp):
AAAAACAGATTTTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACTG
Found at i:130785781 original size:30 final size:30
Alignment explanation
Indices: 130785745--130785806 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
130785735 TTTTGAAAAA
130785745 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
130785775 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
130785805 CA
1 CA
130785807 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:130785925 original size:14 final size:14
Alignment explanation
Indices: 130785902--130785936 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
130785892 TGAGTTGATT
130785902 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
130785915 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
130785929 TTTGAAAA
1 TTTGAAAA
130785937 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:130786244 original size:72 final size:73
Alignment explanation
Indices: 130785954--130786482 Score: 434
Period size: 72 Copynumber: 6.8 Consensus size: 73
130785944 ACATGTAACC
* * * *
130785954 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATAC
* *
130786019 CTCAGTGTGTGAT
62 CTCAGCGTGT-CT
* * *
130786032 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACC
*
130786097 TCAGCGCATGAGC-
63 TCAGCG--TG-TCT
* * *
130786110 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
130786175 ACGTGTCT
66 GCGTGTCT
* ** * *
130786183 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
130786247 GCGTGTCC
66 GCGTGTCT
*
130786255 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGGCAGAAATTGAAAAAT
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTGAAA-ACAGAAATTG----A-
** ** *
130786320 GGAAATTGAAAATACCTCGACGTGTGAT
56 --AAA-T--ACCT-CAGC---GTGT-CT
* * *
130786348 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
130786413 CAGCGTGTC-
64 CAGCGTGTCT
* *
130786422 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAAAATTGAAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
130786483 ACGGAAATTG
Statistics
Matches: 368, Mismatches: 54, Indels: 61
0.76 0.11 0.13
Matches are distributed among these distances:
72 66 0.18
73 30 0.08
74 43 0.12
75 32 0.09
76 14 0.04
77 49 0.13
78 14 0.04
79 51 0.14
80 2 0.01
82 2 0.01
83 2 0.01
85 2 0.01
86 2 0.01
88 2 0.01
89 2 0.01
90 9 0.02
91 9 0.02
92 4 0.01
93 1 0.00
94 32 0.09
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:130786444 original size:74 final size:75
Alignment explanation
Indices: 130786321--130786482 Score: 222
Period size: 74 Copynumber: 2.1 Consensus size: 75
130786311 TTGAAAAATG
*
130786321 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
130786386 TTTTGACAACA
65 TTTTGACAACA
* * *
130786397 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
130786460 TTTTGA-AAGGCA
65 TTTTGACAA--CA
*
130786472 AAAATTGAAAA
1 GAAATTGAAAA
130786483 ACGGAAATTG
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
73 2 0.03
74 42 0.55
75 12 0.16
76 21 0.27
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAACA
Found at i:130786537 original size:165 final size:165
Alignment explanation
Indices: 130786151--130786800 Score: 889
Period size: 165 Copynumber: 3.9 Consensus size: 165
130786141 TGATTTTTTG
* * * ** *
130786151 AAAACAGAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* *
130786214 TGA--ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
66 TGACTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
130786277 AATATGAGTTGATTTTTTTTTTGAAAGGCAGAAATTGA
131 AATATGAGTTGA---TTTTTTTGAAAGGCAGAAATTGA
* *
130786315 AAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
*
130786380 TGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGACTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
*
130786445 AATATGAGTTGATTTTTTTGAAAGGCAAAAATTGA
131 AATATGAGTTGATTTTTTTGAAAGGCAGAAATTGA
* * *
130786480 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
130786545 TGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGC
66 TGACTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
* *
130786610 AATATGAGTT-TTTTTTTTGAAAGACAGAAATTGA
131 AATATGAGTTGATTTTTTTGAAAGGCAGAAATTGA
* *
130786644 AAAACGGAAATT-AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
130786708 TGATTCTTTAAAACATAATAATGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAA
66 TGA--CTTT------T--T--TGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAA
*
130786773 CTCACCTCTCGCAATATGAGCTGATTTT
119 CTCACCTCTCGCAATATGAGTTGATTTT
130786801 GAAAAAGTAG
Statistics
Matches: 438, Mismatches: 31, Indels: 22
0.89 0.06 0.04
Matches are distributed among these distances:
163 54 0.12
164 60 0.14
165 158 0.36
166 31 0.07
168 69 0.16
171 1 0.00
173 1 0.00
175 60 0.14
176 4 0.01
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (165 bp):
AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGACTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTTTGAAAGGCAGAAATTGA
Found at i:130786619 original size:74 final size:75
Alignment explanation
Indices: 130786476--130786646 Score: 220
Period size: 74 Copynumber: 2.3 Consensus size: 75
130786466 AAGGCAAAAA
* * * * *
130786476 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATAC
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGT-ACCTAAGGCTCAACTCACCACTCGCAATAC
130786541 GAGTTGATTTTT
65 GAGTT-ATTTTT
* * * *
130786553 TTGACA-ACAGAAATTGAAATTACCTCAGCGTGT-CCTAAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTACCTAAGGCTCAACTCACCACTCGCAATACG
*
130786616 AGTTTTTTTT
66 AGTTATTTTT
130786626 TTGAAAGACAGAAATTGAAAA
1 TTGAAAGACAGAAATTGAAAA
130786647 ACGGAAATTA
Statistics
Matches: 82, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
73 10 0.12
74 43 0.52
76 24 0.29
77 5 0.06
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (75 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTACCTAAGGCTCAACTCACCACTCGCAATACG
AGTTATTTTT
Found at i:130786781 original size:86 final size:88
Alignment explanation
Indices: 130786558--130786798 Score: 310
Period size: 86 Copynumber: 2.8 Consensus size: 88
130786548 TTTTTTTGAC
* * * * **
130786558 AACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTTTT
1 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
130786623 TTTTTGAAAGACAGAAATTGAAA
66 TCTTTGAAAGACAGAAAATGAAA
* * *
130786646 AACGGAAATT-AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTG
1 AACAGAAATTGAAAATACCTCGGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
130786710 ATTCTTT-AAA-ACATAATAATG-AA
64 ATTCTTTGAAAGACAGAA-AATGAAA
*
130786733 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
130786798 T
66 T
130786799 TTGAAAAAGT
Statistics
Matches: 133, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
86 39 0.29
87 27 0.20
88 28 0.21
89 39 0.29
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (88 bp):
AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TCTTTGAAAGACAGAAAATGAAA
Found at i:130786958 original size:127 final size:124
Alignment explanation
Indices: 130786732--130787041 Score: 525
Period size: 127 Copynumber: 2.5 Consensus size: 124
130786722 ATAATAATGA
* * *
130786732 AAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
1 AAACAGAAATTG-AAATACCTC-TCATG-TCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
130786797 TTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAC
63 TTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAC
130786859 AAACAGAAATTGAAATTACCTCATCATGTTCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
1 AAACAGAAATTGAAA-TACCTC-TCATG-TCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
130786924 TTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAC
63 TTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAC
130786986 AAACAGAAATTGAAATA-C-CTCATGTCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAACAGAAATTGAAATACCTCTCATGTCTGAGGCTCAACTCACCTCTCGCAATATGAG
130787042 TTGAAATTAA
Statistics
Matches: 177, Mismatches: 5, Indels: 7
0.94 0.03 0.04
Matches are distributed among these distances:
122 32 0.18
123 5 0.03
124 1 0.01
125 1 0.01
126 5 0.03
127 133 0.75
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (124 bp):
AAACAGAAATTGAAATACCTCTCATGTCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
TGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAC
Found at i:130787036 original size:68 final size:70
Alignment explanation
Indices: 130786950--130787139 Score: 237
Period size: 72 Copynumber: 2.7 Consensus size: 70
130786940 ATTAAAAGGT
* * * *
130786950 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTG-AAATACCTCA-TG-TC
1 TCAACTCACCTCTCGCAATATGAGTTGATT-TTGAAAAACAAAAATTGAAAATACCTCAGTGCCC
*
130787012 TGAGGC
65 CGAGGC
**
130787018 TCAACTCACCTCTCGCAATATGAGTTGAAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAA-ACAAAAATTGAAAATACCTCA--GTGC
130787082 CCCGAGGC
63 CCCGAGGC
*
130787090 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATT-AAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTGAAAA
130787140 GGCTTAACTC
Statistics
Matches: 105, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
66 3 0.03
67 11 0.10
68 37 0.35
71 6 0.06
72 44 0.42
73 4 0.04
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (70 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTGAAAATACCTCAGTGCCCC
GAGGC
Found at i:130796622 original size:16 final size:15
Alignment explanation
Indices: 130796603--130796638 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
130796593 TTTCTTCTTT
*
130796603 TTTTTTTAGGGTTAGG
1 TTTTTTT-GGGGTAGG
130796619 TTTTTTTGGGGTAGG
1 TTTTTTTGGGGTAGG
130796634 TTTTT
1 TTTTT
130796639 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.61
Consensus pattern (15 bp):
TTTTTTTGGGGTAGG
Found at i:130796622 original size:29 final size:29
Alignment explanation
Indices: 130796548--130796625 Score: 77
Period size: 29 Copynumber: 2.7 Consensus size: 29
130796538 TGGGAAAGTG
*
130796548 GTTAGTGGCTAGGTTTTTTTATCTTTTTTT
1 GTTAG-GGTTAGGTTTTTTTATCTTTTTTT
* ***
130796578 GTTAGGTTTTTCTTTTTTCT-TCTTTTTTT
1 GTTAGGGTTAGGTTTTTT-TATCTTTTTTT
*
130796607 TTTAGGGTTAGGTTTTTTT
1 GTTAGGGTTAGGTTTTTTT
130796626 GGGGTAGGTT
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
28 1 0.03
29 30 0.81
30 6 0.16
ACGTcount: A:0.08, C:0.06, G:0.18, T:0.68
Consensus pattern (29 bp):
GTTAGGGTTAGGTTTTTTTATCTTTTTTT
Found at i:130796652 original size:15 final size:15
Alignment explanation
Indices: 130796634--130796668 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
130796624 TTGGGGTAGG
130796634 TTTTTCTTT-TTCTTT
1 TTTTTCTTTGTT-TTT
130796649 TTTTTCTTTGTTTTT
1 TTTTTCTTTGTTTTT
130796664 TTTTT
1 TTTTT
130796669 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 17 0.89
16 2 0.11
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.89
Consensus pattern (15 bp):
TTTTTCTTTGTTTTT
Found at i:130797366 original size:25 final size:25
Alignment explanation
Indices: 130797242--130797459 Score: 98
Period size: 25 Copynumber: 8.9 Consensus size: 25
130797232 TTTTTTTTGT
* *
130797242 TATTAT-TATATTTC-TTAATATTA
1 TATTATGTATATATCTTTAATACTA
* *
130797265 TA-TATATATATATTCTTT--TAATA
1 TATTATGTATATA-TCTTTAATACTA
* * *
130797288 TATTAGGTATAT-TC-TAAATTCTA
1 TATTATGTATATATCTTTAATACTA
* *
130797311 TATTACGTATATATATATT-ATACTA
1 TATTATGTATATATCT-TTAATACTA
*
130797336 TTTTATGTATATATCTTTAATACTA
1 TATTATGTATATATCTTTAATACTA
* * * **
130797361 TATTATTTATATTTTTTTTTCTACATGTTA
1 TATTATGTATA---TATCTT-TA-ATACTA
*
130797391 TCTTATGTATATAT-TTTAAT--TA
1 TATTATGTATATATCTTTAATACTA
* * * *
130797413 TATTATGTATGTATTTTTTACACTA
1 TATTATGTATATATCTTTAATACTA
* *
130797438 TATTATGTACATATTTTTAATA
1 TATTATGTATATATCTTTAATA
130797460 TTATCATGTA
Statistics
Matches: 146, Mismatches: 31, Indels: 34
0.69 0.15 0.16
Matches are distributed among these distances:
21 1 0.01
22 19 0.13
23 31 0.21
24 14 0.10
25 57 0.39
26 3 0.02
27 2 0.01
28 4 0.03
29 2 0.01
30 13 0.09
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.56
Consensus pattern (25 bp):
TATTATGTATATATCTTTAATACTA
Found at i:130797413 original size:22 final size:22
Alignment explanation
Indices: 130797388--130797495 Score: 80
Period size: 22 Copynumber: 4.9 Consensus size: 22
130797378 TTTCTACATG
*
130797388 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
130797410 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTA-A
* *
130797435 CTATATTATGTACATATTTTTAA
1 TTATATTATGTATATA-TTTTAA
* *
130797458 -TATTATCATGTATTTATTTT--
1 TTA-TATTATGTATATATTTTAA
*
130797478 TTATA-TATGTACATATTT
1 TTATATTATGTATATATTT
130797496 ATGTAGTATT
Statistics
Matches: 69, Mismatches: 11, Indels: 15
0.73 0.12 0.16
Matches are distributed among these distances:
19 10 0.14
20 2 0.03
21 2 0.03
22 17 0.25
23 13 0.19
24 13 0.19
25 12 0.17
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.58
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:130797485 original size:25 final size:24
Alignment explanation
Indices: 130797395--130797485 Score: 66
Period size: 24 Copynumber: 3.8 Consensus size: 24
130797385 ATGTTATCTT
*
130797395 ATGTATATA--TTTTAAT-TATATT
1 ATGTATATATTTTTTAATAT-TATC
* *
130797417 ATGTATGTATTTTTTACACTA-TATT
1 ATGTATATATTTTTTA-A-TATTATC
*
130797442 ATGTACATA-TTTTTAATATTATC
1 ATGTATATATTTTTTAATATTATC
*
130797465 ATGTATTTATTTTTTATATAT
1 ATGTATATATTTTTTA-ATAT
130797486 GTACATATTT
Statistics
Matches: 55, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
22 10 0.18
23 11 0.20
24 17 0.31
25 16 0.29
26 1 0.02
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.58
Consensus pattern (24 bp):
ATGTATATATTTTTTAATATTATC
Found at i:130797494 original size:19 final size:20
Alignment explanation
Indices: 130797436--130797495 Score: 61
Period size: 23 Copynumber: 3.0 Consensus size: 20
130797426 TTTTTTACAC
130797436 TATAT-TATGTACATATTTT
1 TATATATATGTACATATTTT
**
130797455 TAATATTATCATGTATTTATTTT
1 T-ATA-TAT-ATGTACATATTTT
130797478 T-TATATATGTACATATTT
1 TATATATATGTACATATTT
130797496 ATGTAGTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
19 11 0.33
20 6 0.18
21 3 0.09
22 1 0.03
23 12 0.36
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (20 bp):
TATATATATGTACATATTTT
Found at i:130797634 original size:16 final size:15
Alignment explanation
Indices: 130797610--130797657 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
130797600 TAATTATTAT
*
130797610 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
130797626 TATTTTAATATTTTA
1 TATTTTAATATTTTA
*
130797641 TATTTTATATACTTTA
1 TATTTTA-ATATTTTA
130797657 T
1 T
130797658 TATTCACATC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 8 0.28
16 21 0.72
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:130797645 original size:7 final size:8
Alignment explanation
Indices: 130797610--130797661 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
130797600 TAATTATTAT
*
130797610 TATTCTAA
1 TATTTTAA
*
130797618 TATTTTGA
1 TATTTTAA
130797626 TATTTTAA
1 TATTTTAA
130797634 TATTTT-A
1 TATTTTAA
130797641 TATTTTATA
1 TATTTTA-A
* *
130797650 TACTTTAT
1 TATTTTAA
130797658 TATT
1 TATT
130797662 CACATCACTA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 7 0.19
8 22 0.61
9 7 0.19
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (8 bp):
TATTTTAA
Found at i:130799155 original size:51 final size:50
Alignment explanation
Indices: 130798992--130799161 Score: 144
Period size: 51 Copynumber: 3.2 Consensus size: 50
130798982 ATTAATATTC
* * *
130798992 TAAAAATAAAAGTTTTTAGCTATCTG-TAAAATTTCACCATTATCAAAATTT
1 TAAAAATTAAAGTTTTTAGATA-CTGATAAAATTTCA-CACTATCAAAATTT
* * ** * *
130799043 TAAAAATTAAAATTTTTAAATACCAAAAAAATTTCAACACTATCAAAATTCAAGACC
1 TAAAAATTAAAGTTTTTAGATACTGATAAAATTTC-ACACTATCAAAATT------T
* *
130799100 TAAAAATTAAAGTTTTTAGATAATGATAAAATCTCACTACTATCAAAATTT
1 TAAAAATTAAAGTTTTTAGATACTGATAAAATTTCAC-ACTATCAAAATTT
130799151 TAAAAATTAAA
1 TAAAAATTAAA
130799162 ATCTCACCTC
Statistics
Matches: 93, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
50 1 0.01
51 49 0.53
52 1 0.01
56 2 0.02
57 40 0.43
ACGTcount: A:0.50, C:0.12, G:0.04, T:0.34
Consensus pattern (50 bp):
TAAAAATTAAAGTTTTTAGATACTGATAAAATTTCACACTATCAAAATTT
Found at i:130799162 original size:32 final size:34
Alignment explanation
Indices: 130799125--130799198 Score: 100
Period size: 32 Copynumber: 2.2 Consensus size: 34
130799115 TTAGATAATG
130799125 ATAAAATCTCA-CTACTATCA-AAATTTTAAAAAT
1 ATAAAATCTCACCT-CTATCACAAATTTTAAAAAT
*
130799158 -TAAAATCTCACCTCTATCATCAAATTTTAAAGAT
1 ATAAAATCTCACCTCTATCA-CAAATTTTAAAAAT
130799192 ATAAAAT
1 ATAAAAT
130799199 TATTATCATG
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
32 16 0.44
33 2 0.06
34 12 0.33
35 6 0.17
ACGTcount: A:0.49, C:0.16, G:0.01, T:0.34
Consensus pattern (34 bp):
ATAAAATCTCACCTCTATCACAAATTTTAAAAAT
Found at i:130800286 original size:16 final size:18
Alignment explanation
Indices: 130800255--130800288 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
130800245 TGTTTTTAAG
130800255 TATTTATATATAAAATTT
1 TATTTATATATAAAATTT
130800273 TATTTA-AT-TAAAATTT
1 TATTTATATATAAAATTT
130800289 AATACATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 2 0.12
18 6 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TATTTATATATAAAATTT
Found at i:130801130 original size:25 final size:25
Alignment explanation
Indices: 130801084--130801132 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
130801074 AGAAAGATAA
* *
130801084 TTTAAATATTACTTATAAAAAAAAG
1 TTTAAATATCAATTATAAAAAAAAG
130801109 TTTAAATATCAATT-TAAGAAAAAA
1 TTTAAATATCAATTATAA-AAAAAA
130801133 TTATAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (25 bp):
TTTAAATATCAATTATAAAAAAAAG
Found at i:130810818 original size:3 final size:3
Alignment explanation
Indices: 130810810--130810843 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
130810800 ATTTAACTGA
130810810 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
130810844 AAAACTAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:130811434 original size:21 final size:23
Alignment explanation
Indices: 130811399--130811448 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
130811389 AACCAAACTG
*
130811399 CAATTTTCGATTTCAGA-TACTT
1 CAATTTTCGATTTCAGATTAATT
* *
130811421 CAATTTT-TATTTCATATTAATT
1 CAATTTTCGATTTCAGATTAATT
130811443 CAATTT
1 CAATTT
130811449 CAGTTTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.30, C:0.14, G:0.04, T:0.52
Consensus pattern (23 bp):
CAATTTTCGATTTCAGATTAATT
Found at i:130813791 original size:2 final size:2
Alignment explanation
Indices: 130813786--130813824 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
130813776 ATTTATATTT
130813786 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
130813825 TAATACCATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:130814066 original size:17 final size:18
Alignment explanation
Indices: 130814046--130814079 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
130814036 GTGAAGAAGG
*
130814046 ATTTGTAGTG-GGGTGAT
1 ATTTATAGTGTGGGTGAT
130814063 ATTTATAGTGTGGGTGA
1 ATTTATAGTGTGGGTGA
130814080 GGATTAACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (18 bp):
ATTTATAGTGTGGGTGAT
Found at i:130817648 original size:14 final size:16
Alignment explanation
Indices: 130817625--130817656 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
130817615 TTACAAATAA
130817625 TTTAATTTATTAA-AT
1 TTTAATTTATTAAGAT
130817640 TTTAA-TTATTAAGAT
1 TTTAATTTATTAAGAT
130817655 TT
1 TT
130817657 AGTGCTGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TTTAATTTATTAAGAT
Found at i:130819262 original size:3 final size:3
Alignment explanation
Indices: 130819256--130819292 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
130819246 CTTTATTATC
*
130819256 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GTT GCT G
1 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT G
130819293 TAGATATCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.30, G:0.35, T:0.35
Consensus pattern (3 bp):
GCT
Found at i:130821990 original size:23 final size:22
Alignment explanation
Indices: 130821964--130822008 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
130821954 TTAATAGCCA
*
130821964 AAATTAATTAAAAAATAAAAATT
1 AAATTAA-CAAAAAATAAAAATT
* *
130821987 AAATTGACAAAAAATATAAATT
1 AAATTAACAAAAAATAAAAATT
130822009 TTAAAGTCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (22 bp):
AAATTAACAAAAAATAAAAATT
Found at i:130824266 original size:14 final size:13
Alignment explanation
Indices: 130824243--130824285 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
130824233 TAGAAGAAAT
130824243 AAAA-AGAAATAA
1 AAAAGAGAAATAA
130824255 AAATAGAGAAATAA
1 AAA-AGAGAAATAA
130824269 ATAAAGAGGAAATAA
1 A-AAAGA-GAAATAA
130824284 AA
1 AA
130824286 GAAATAAGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 3 0.11
13 1 0.04
14 13 0.48
15 10 0.37
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.12
Consensus pattern (13 bp):
AAAAGAGAAATAA
Found at i:130840495 original size:30 final size:29
Alignment explanation
Indices: 130840433--130840496 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
130840423 TGTCTCTCTT
* *
130840433 TTTTTTTTAATATTTGTGGAATTAAGCCA
1 TTTTTTTTAATATTTCTGGAATTAAGCAA
*
130840462 TTTTTTTTAATATTTCTAGG-ATTAGGCTAA
1 TTTTTTTTAATATTTCT-GGAATTAAGC-AA
130840492 TTTTT
1 TTTTT
130840497 GAAAATGCGC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 22 0.73
30 8 0.27
ACGTcount: A:0.25, C:0.06, G:0.12, T:0.56
Consensus pattern (29 bp):
TTTTTTTTAATATTTCTGGAATTAAGCAA
Found at i:130840770 original size:11 final size:11
Alignment explanation
Indices: 130840754--130840818 Score: 78
Period size: 11 Copynumber: 5.9 Consensus size: 11
130840744 TTTTTTTTTC
*
130840754 CAATTCACTCT
1 CAATTCTCTCT
*
130840765 CAATTCTCTTT
1 CAATTCTCTCT
130840776 CAATTCTCTCT
1 CAATTCTCTCT
*
130840787 -AAGTTCTTTCT
1 CAA-TTCTCTCT
*
130840798 CAATTCACTCT
1 CAATTCTCTCT
130840809 CAATTCTCTC
1 CAATTCTCTC
130840819 AATTTTTATT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
10 2 0.04
11 41 0.91
12 2 0.04
ACGTcount: A:0.22, C:0.32, G:0.02, T:0.45
Consensus pattern (11 bp):
CAATTCTCTCT
Found at i:130840779 original size:22 final size:23
Alignment explanation
Indices: 130840754--130840817 Score: 89
Period size: 22 Copynumber: 2.9 Consensus size: 23
130840744 TTTTTTTTTC
130840754 CAATTCACTCTCAATTCTCTT-T
1 CAATTCACTCTCAATTCTCTTCT
*
130840776 CAATTCTCTCT-AAGTTCT-TTCT
1 CAATTCACTCTCAA-TTCTCTTCT
130840798 CAATTCACTCTCAATTCTCT
1 CAATTCACTCTCAATTCTCT
130840818 CAATTTTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
21 4 0.11
22 29 0.81
23 3 0.08
ACGTcount: A:0.22, C:0.31, G:0.02, T:0.45
Consensus pattern (23 bp):
CAATTCACTCTCAATTCTCTTCT
Found at i:130845657 original size:34 final size:34
Alignment explanation
Indices: 130845614--130845682 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
130845604 GCATCTAATG
130845614 AAATTAAAAGTTCCTAGTTCATGCCTACAAGCTA
1 AAATTAAAAGTTCCTAGTTCATGCCTACAAGCTA
130845648 AAATTAAAAGTTCCTAGTTCATGCCTACAAGCTA
1 AAATTAAAAGTTCCTAGTTCATGCCTACAAGCTA
130845682 A
1 A
130845683 CATTCACATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (34 bp):
AAATTAAAAGTTCCTAGTTCATGCCTACAAGCTA
Found at i:130850907 original size:76 final size:76
Alignment explanation
Indices: 130850803--130850951 Score: 244
Period size: 76 Copynumber: 2.0 Consensus size: 76
130850793 TTAGATTTCG
* * * * *
130850803 AAATTTAGATTCAATTGTTAATGTTGTAATAAATTTAAGTTTAACAAAATAGTTTTAACACCGAT
1 AAATTTAGATTCAATTATTAACGCTGTAATAAACTTAAGTTTAACAAAATAATTTTAACACCGAT
130850868 AATAATTAGAT
66 AATAATTAGAT
*
130850879 AAATTTAGATTCAATTATTAACGCTGTAATGAACTTAAGTTTAACAAAATAATTTTAACACCGAT
1 AAATTTAGATTCAATTATTAACGCTGTAATAAACTTAAGTTTAACAAAATAATTTTAACACCGAT
130850944 AATAATTA
66 AATAATTA
130850952 AATATAAATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
76 67 1.00
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (76 bp):
AAATTTAGATTCAATTATTAACGCTGTAATAAACTTAAGTTTAACAAAATAATTTTAACACCGAT
AATAATTAGAT
Found at i:130850991 original size:30 final size:29
Alignment explanation
Indices: 130850951--130851026 Score: 77
Period size: 29 Copynumber: 2.6 Consensus size: 29
130850941 GATAATAATT
130850951 AAATATAAATTTTGAAATAGA-AAAAATA-AA
1 AAAT-TAAATTTT-AAATA-ATAAAAATACAA
*
130850981 AGAATTAAATTTTTAAA-AATAAAAATACAT
1 A-AATTAAA-TTTTAAATAATAAAAATACAA
130851011 AAATTAAATTTTAAAT
1 AAATTAAATTTTAAAT
130851027 TTACTAACCG
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
28 8 0.20
29 15 0.38
30 10 0.25
31 7 0.17
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (29 bp):
AAATTAAATTTTAAATAATAAAAATACAA
Found at i:130859144 original size:17 final size:17
Alignment explanation
Indices: 130859102--130859145 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
130859092 AATCCAATGG
130859102 ATAGTTATAAAAATTAA
1 ATAGTTATAAAAATTAA
* *
130859119 ATA-TCTATAAATATTGA
1 ATAGT-TATAAAAATTAA
130859136 ATAGTTATAA
1 ATAGTTATAA
130859146 GAGTCTTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 1 0.04
17 21 0.91
18 1 0.04
ACGTcount: A:0.52, C:0.02, G:0.07, T:0.39
Consensus pattern (17 bp):
ATAGTTATAAAAATTAA
Found at i:130867587 original size:21 final size:21
Alignment explanation
Indices: 130867546--130867587 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
130867536 TAGGGTTATT
*
130867546 TTTCTCTTATTTTTCGTCAGA
1 TTTCTCTTATTTTTCGACAGA
*
130867567 TTTCATCTTGTTTTT-GACAGA
1 TTTC-TCTTATTTTTCGACAGA
130867588 ATAGTACAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.17, C:0.17, G:0.12, T:0.55
Consensus pattern (21 bp):
TTTCTCTTATTTTTCGACAGA
Found at i:130881780 original size:65 final size:64
Alignment explanation
Indices: 130881703--130881831 Score: 204
Period size: 65 Copynumber: 2.0 Consensus size: 64
130881693 CATATAATGA
*
130881703 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAACATCCTAATTATTTGACATAAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAACATCCTAATTATTTGACAT-AAGCAT
* * * *
130881768 CACATTTAGTTAGGAGCATTTGATTTATTTCAATCATAGCATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAACATCCTAATTATTTGACATAAGCAT
130881832 AGATTAATGA
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
64 6 0.10
65 53 0.90
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAACATCCTAATTATTTGACATAAGCAT
Found at i:130882173 original size:133 final size:133
Alignment explanation
Indices: 130881932--130882463 Score: 758
Period size: 133 Copynumber: 4.0 Consensus size: 133
130881922 GAGGCAACAA
* * ** * *
130881932 GCTGAAAATTGTAGATCTTGTTTCCCCGAGATTTTAGTGGATCAGATCGAAGACGGCGAATCTAG
1 GCTGAAGATTGTAGATCTTGTTTCCCTGAGATTGCAGTAGAGCAGATCGAAGACGGCGAATCTAG
* * * *
130881997 GTTTTCTGATGTTGCAGCGAAGCAGATTTAAGCCACCATCCTAGCTCTCTAAAGTTGTAGTGGAG
66 GTTTCCTGATATTGCAGCGAAGCAGATTTAAGCCACCACCCTAGCTCCCTAAAGTTGTAGTGGAG
130882062 TAG
131 TAG
* *
130882065 GCTGAAGATTGTAGATCTTGTTTCCCTGAGATTGTAGTAGATCAGATCGAAGACGGCGAATCTAG
1 GCTGAAGATTGTAGATCTTGTTTCCCTGAGATTGCAGTAGAGCAGATCGAAGACGGCGAATCTAG
* * * * *
130882130 GTTTCCTAATGTTGCAGTGAAGTAGATTTAAGCCACCACCCTAGCTCCCTAAAGTTGTAATGGAG
66 GTTTCCTGATATTGCAGCGAAGCAGATTTAAGCCACCACCCTAGCTCCCTAAAGTTGTAGTGGAG
130882195 TAG
131 TAG
* * *
130882198 GCTGAAGATTGTAGATCTTGTTTCTCTGAGATTGCAGTAGAGCAGATCGAAGACAGCGGATCTAG
1 GCTGAAGATTGTAGATCTTGTTTCCCTGAGATTGCAGTAGAGCAGATCGAAGACGGCGAATCTAG
* * * * *
130882263 GCTTCCTGATATTGCAGTGAAGCAGATTTAAGCCATCATCCTAGCTCTCTAAAGTTGTAGTGGAG
66 GTTTCCTGATATTGCAGCGAAGCAGATTTAAGCCACCACCCTAGCTCCCTAAAGTTGTAGTGGAG
130882328 TAG
131 TAG
** * * * *
130882331 ATTGAAGATTATAGATCTTGTTTCCCTGGGATTGCAGTGGAGCAGATCGAAGACGGCGGATCTAG
1 GCTGAAGATTGTAGATCTTGTTTCCCTGAGATTGCAGTAGAGCAGATCGAAGACGGCGAATCTAG
* * *
130882396 GTTTCTTGATATTGCAGCGAAGTAGATTTAAGTCACCACCCTAGCTCCCTAAAGTTGTAGTGGAG
66 GTTTCCTGATATTGCAGCGAAGCAGATTTAAGCCACCACCCTAGCTCCCTAAAGTTGTAGTGGAG
130882461 TAG
131 TAG
130882464 ACCCAAGATT
Statistics
Matches: 360, Mismatches: 39, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
133 360 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (133 bp):
GCTGAAGATTGTAGATCTTGTTTCCCTGAGATTGCAGTAGAGCAGATCGAAGACGGCGAATCTAG
GTTTCCTGATATTGCAGCGAAGCAGATTTAAGCCACCACCCTAGCTCCCTAAAGTTGTAGTGGAG
TAG
Found at i:130882619 original size:45 final size:46
Alignment explanation
Indices: 130882563--130882678 Score: 135
Period size: 45 Copynumber: 2.5 Consensus size: 46
130882553 ATAGGATCTC
** * * *
130882563 GTCTCCCTGAAGTTGCAGTGGAGCAAGATCGAAATCA-CGATCCTT
1 GTCTCCCTGAAGTTGCAGTGGAGCAAGATAAAAAACAGCGAACCAT
** * * *
130882608 GTCTCTTTGAAGTTGCAGTAGAGCAGGATAAAAAACAGTGAACCAT
1 GTCTCCCTGAAGTTGCAGTGGAGCAAGATAAAAAACAGCGAACCAT
130882654 GTCTCCCTGAAGTTGCAGTGGAGCA
1 GTCTCCCTGAAGTTGCAGTGGAGCA
130882679 TATTGAAGCT
Statistics
Matches: 57, Mismatches: 13, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
45 30 0.53
46 27 0.47
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (46 bp):
GTCTCCCTGAAGTTGCAGTGGAGCAAGATAAAAAACAGCGAACCAT
Found at i:130884614 original size:2 final size:2
Alignment explanation
Indices: 130884607--130884641 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
130884597 AAATACTATT
130884607 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
130884642 TTGTTAACTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:130890208 original size:33 final size:35
Alignment explanation
Indices: 130890113--130890209 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
130890103 TTAATATTTT
*
130890113 AATATATGAAATATAAATTTTAAATATTT--TTAAGC
1 AATATAT-AAAT-TATATTTTAAATATTTAATTAAGC
* *
130890148 AATAAATATTAATTAT-TTATAAA-ATTTAATT-AG-
1 AAT--ATATAAATTATATTTTAAATATTTAATTAAGC
130890181 AATATATAAATTATATTTTAAATATTTAA
1 AATATATAAATTATATTTTAAATATTTAA
130890210 ATATAACCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 10 0.20
32 6 0.12
33 13 0.25
34 8 0.16
35 7 0.14
36 3 0.06
37 4 0.08
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (35 bp):
AATATATAAATTATATTTTAAATATTTAATTAAGC
Found at i:130890552 original size:27 final size:25
Alignment explanation
Indices: 130890509--130890560 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 25
130890499 GAACAGACCC
130890509 TTAATCTAATTACATTATATAATATTT
1 TTAATCTAATTACATTAT-T-ATATTT
*
130890536 TTAATTTAATTTA-ATTATTATATTT
1 TTAATCTAA-TTACATTATTATATTT
130890561 ATACTTCACT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 6 0.26
26 1 0.04
27 13 0.57
28 3 0.13
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (25 bp):
TTAATCTAATTACATTATTATATTT
Found at i:130902191 original size:30 final size:30
Alignment explanation
Indices: 130902114--130902192 Score: 97
Period size: 29 Copynumber: 2.6 Consensus size: 30
130902104 TCTCAACATG
* *
130902114 ATACATCAATTTTGATTTAATGTGTAATTTT
1 ATACATAAAATTTGATTT-ATGTGTAATTTT
* *
130902145 ATACATACACTTTGATTT-TGTGTAATTTT
1 ATACATAAAATTTGATTTATGTGTAATTTT
130902174 ATACATAAAAATTTGATTT
1 ATACAT-AAAATTTGATTT
130902193 GATCGAATTC
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
29 17 0.40
30 10 0.24
31 15 0.36
ACGTcount: A:0.34, C:0.08, G:0.09, T:0.49
Consensus pattern (30 bp):
ATACATAAAATTTGATTTATGTGTAATTTT
Found at i:130902695 original size:27 final size:25
Alignment explanation
Indices: 130902650--130902737 Score: 79
Period size: 31 Copynumber: 3.2 Consensus size: 25
130902640 AACTTGACAA
*
130902650 TTTTTTC-TAATTTGATACTTAAGC
1 TTTTTTCTTAATTTGGTACTTAAGC
*
130902674 TTTTTTCATTCAATTTGGTACTTGAACTTGA
1 TTTTTTC-TT-AATTTGGTACTT-AA---GC
130902705 TACTTTTTCTTAATTTGGTACTTAAGC
1 T--TTTTTCTTAATTTGGTACTTAAGC
130902732 TTTTTT
1 TTTTTT
130902738 AGGTTCAATT
Statistics
Matches: 52, Mismatches: 3, Indels: 17
0.72 0.04 0.24
Matches are distributed among these distances:
24 7 0.13
25 5 0.10
26 1 0.02
27 13 0.25
28 2 0.04
30 2 0.04
31 14 0.27
32 2 0.04
33 6 0.12
ACGTcount: A:0.22, C:0.12, G:0.10, T:0.56
Consensus pattern (25 bp):
TTTTTTCTTAATTTGGTACTTAAGC
Found at i:130903216 original size:60 final size:60
Alignment explanation
Indices: 130903082--130903274 Score: 186
Period size: 59 Copynumber: 3.3 Consensus size: 60
130903072 AACGTTTGAC
* * *
130903082 AAGTTTAAGTACC--ATTGGA-CAAAAAAGA-TTAAGTACTAAATTGGGAA-AAAAAGTGTC-
1 AAGTTTAAGTACCAAATTGGACCAAAAAATATTTAACTACCAAATT---AAGAAAAAGTGTCT
* ** **
130903139 AAGTTTAGGTATAAAATTGGACCCAAAAAATA-TTAACTTTCAAATTAAGAAAAAGTGTCT
1 AAGTTTAAGTACCAAATTGGA-CCAAAAAATATTTAACTACCAAATTAAGAAAAAGTGTCT
* * *
130903199 AAGTTTAAGTACCAAATTGGACTAAAAAATATTTAAGTACCAAATTAAGAAAAAATGT-T
1 AAGTTTAAGTACCAAATTGGACCAAAAAATATTTAACTACCAAATTAAGAAAAAGTGTCT
*
130903258 AAGTTTAAATACCAAAT
1 AAGTTTAAGTACCAAAT
130903275 ATTATATTAA
Statistics
Matches: 112, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
57 10 0.09
58 2 0.02
59 42 0.38
60 40 0.36
61 18 0.16
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.28
Consensus pattern (60 bp):
AAGTTTAAGTACCAAATTGGACCAAAAAATATTTAACTACCAAATTAAGAAAAAGTGTCT
Found at i:130903230 original size:59 final size:61
Alignment explanation
Indices: 130903129--130903274 Score: 183
Period size: 60 Copynumber: 2.5 Consensus size: 61
130903119 AAATTGGGAA
* ** **
130903129 AAAAAGTGTC-AAGTTTAGGTATAAAATTGGACCCAAAAAATA-TTAACTTTCAAATTAAG
1 AAAAAGTGTCTAAGTTTAAGTACCAAATTGGACCCAAAAAATATTTAACTACCAAATTAAG
* *
130903188 AAAAAGTGTCTAAGTTTAAGTACCAAATTGGA-CTAAAAAATATTTAAGTACCAAATTAAG
1 AAAAAGTGTCTAAGTTTAAGTACCAAATTGGACCCAAAAAATATTTAACTACCAAATTAAG
* *
130903248 AAAAAATGT-TAAGTTTAAATACCAAAT
1 AAAAAGTGTCTAAGTTTAAGTACCAAAT
130903275 ATTATATTAA
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
59 36 0.47
60 40 0.53
ACGTcount: A:0.49, C:0.10, G:0.12, T:0.29
Consensus pattern (61 bp):
AAAAAGTGTCTAAGTTTAAGTACCAAATTGGACCCAAAAAATATTTAACTACCAAATTAAG
Found at i:130903259 original size:25 final size:27
Alignment explanation
Indices: 130903203--130903261 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 27
130903193 GTGTCTAAGT
** *
130903203 TTAAGTACCAAATTGGACTAAAAAATAT
1 TTAAGTACCAAATT-GAAGAAAAAATAG
130903231 TTAAGTACCAAATT-AAGAAAAAAT-G
1 TTAAGTACCAAATTGAAGAAAAAATAG
130903256 TTAAGT
1 TTAAGT
130903262 TTAAATACCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 6 0.21
26 8 0.29
28 14 0.50
ACGTcount: A:0.51, C:0.08, G:0.12, T:0.29
Consensus pattern (27 bp):
TTAAGTACCAAATTGAAGAAAAAATAG
Found at i:130904243 original size:27 final size:29
Alignment explanation
Indices: 130904205--130904272 Score: 86
Period size: 27 Copynumber: 2.4 Consensus size: 29
130904195 AAATCTTTAT
* *
130904205 ATTTTATTTTTGT-AATATTATACATAA-
1 ATTTTAATTTTGTAAATATTATAAATAAC
*
130904232 ATTTTAATTTTGTACAATTTTATAAATAAC
1 ATTTTAATTTTGTA-AATATTATAAATAAC
130904262 ATTTTAATTTT
1 ATTTTAATTTT
130904273 ATTTGATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
27 12 0.34
29 12 0.34
30 11 0.31
ACGTcount: A:0.37, C:0.04, G:0.03, T:0.56
Consensus pattern (29 bp):
ATTTTAATTTTGTAAATATTATAAATAAC
Found at i:130904282 original size:30 final size:30
Alignment explanation
Indices: 130904222--130904289 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
130904212 TTTTGTAATA
* *
130904222 TTATACATAAATTTTAATTTTGTACAA-TT
1 TTATAAATAAATTTTAATTTTATACAATTT
***
130904251 TTATAAATAACATTTTAATTTTATTTGATTT
1 TTATAAATAA-ATTTTAATTTTATACAATTT
130904282 TTATAAAT
1 TTATAAAT
130904290 TGTCAATACC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 9 0.28
30 13 0.41
31 10 0.31
ACGTcount: A:0.38, C:0.04, G:0.03, T:0.54
Consensus pattern (30 bp):
TTATAAATAAATTTTAATTTTATACAATTT
Done.