Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 425 of 438
Found at i:131432842 original size:18 final size:18
Alignment explanation
Indices: 131432819--131432905 Score: 147
Period size: 18 Copynumber: 4.8 Consensus size: 18
131432809 TGGTAATCTG
131432819 GGAAGTGGCGGAAGATTA
1 GGAAGTGGCGGAAGATTA
131432837 GGAAGTGGCGGAAGATTA
1 GGAAGTGGCGGAAGATTA
*
131432855 GGAAGTGGTGGAAGATTA
1 GGAAGTGGCGGAAGATTA
*
131432873 GGAAGTGGCGGAAGGTTA
1 GGAAGTGGCGGAAGATTA
*
131432891 GGAAGTGGTGGAAGA
1 GGAAGTGGCGGAAGA
131432906 ACAATGATAG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.32, C:0.03, G:0.47, T:0.17
Consensus pattern (18 bp):
GGAAGTGGCGGAAGATTA
Found at i:131434557 original size:21 final size:20
Alignment explanation
Indices: 131434505--131434558 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
131434495 AAAAAAACGA
* *
131434505 AAATACAAAAGAATATCAAC
1 AAATTCAAAAAAATATCAAC
* *
131434525 AAATTCAGAAAAATATCAAAT
1 AAATTCAAAAAAATATC-AAC
*
131434546 AAATTTAAAAAAA
1 AAATTCAAAAAAA
131434559 AAATGGAAAG
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.67, C:0.09, G:0.04, T:0.20
Consensus pattern (20 bp):
AAATTCAAAAAAATATCAAC
Found at i:131435039 original size:24 final size:24
Alignment explanation
Indices: 131434988--131435041 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
131434978 AATAAATTAT
* * *
131434988 ATTTTATTTATATTTTAAATGAAT
1 ATTTTACTTATATTTTAAATAAAA
**
131435012 ATTTTACTTATATTTTCTATAAAA
1 ATTTTACTTATATTTTAAATAAAA
131435036 ATTTTA
1 ATTTTA
131435042 TACGAGCCTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (24 bp):
ATTTTACTTATATTTTAAATAAAA
Found at i:131435088 original size:21 final size:21
Alignment explanation
Indices: 131435050--131435090 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
131435040 TATACGAGCC
*
131435050 TAAATTAATCATATTCAATAA
1 TAAATTAATAATATTCAATAA
131435071 TAAATTAAATAATA-TCAATA
1 TAAATT-AATAATATTCAATA
131435091 TCAATATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (21 bp):
TAAATTAATAATATTCAATAA
Found at i:131436888 original size:42 final size:42
Alignment explanation
Indices: 131436832--131436921 Score: 135
Period size: 42 Copynumber: 2.1 Consensus size: 42
131436822 AACATGCTTT
* * *
131436832 AAAACATAGACTTGCATAGGAGCATGCGTAAAACATATCTTC
1 AAAACACAGACTTGCATAGGAGCATGCATAAAACATATATTC
* *
131436874 AAAACACAGGCTTGCATAGGAGCATGCATAAAACATATATTT
1 AAAACACAGACTTGCATAGGAGCATGCATAAAACATATATTC
131436916 AAAACA
1 AAAACA
131436922 TAGCTTAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.44, C:0.18, G:0.16, T:0.22
Consensus pattern (42 bp):
AAAACACAGACTTGCATAGGAGCATGCATAAAACATATATTC
Found at i:131436920 original size:13 final size:13
Alignment explanation
Indices: 131436902--131436947 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
131436892 GGAGCATGCA
*
131436902 TAAAACATATATT
1 TAAAACATATCTT
*
131436915 TAAAACATAGCTT
1 TAAAACATATCTT
*
131436928 AAAAACATATCTT
1 TAAAACATATCTT
*
131436941 GAAAACA
1 TAAAACA
131436948 GAGTATTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.54, C:0.13, G:0.04, T:0.28
Consensus pattern (13 bp):
TAAAACATATCTT
Found at i:131436958 original size:26 final size:26
Alignment explanation
Indices: 131436902--131436959 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
131436892 GGAGCATGCA
* *
131436902 TAAAACATATATTTAAAACATAGCTT
1 TAAAACATATATTGAAAACAGAGCTT
* *
131436928 AAAAACATATCTTGAAAACAGAG-TAT
1 TAAAACATATATTGAAAACAGAGCT-T
131436954 TAAAAC
1 TAAAAC
131436960 TTTAAAAAAC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.53, C:0.12, G:0.07, T:0.28
Consensus pattern (26 bp):
TAAAACATATATTGAAAACAGAGCTT
Found at i:131437464 original size:24 final size:24
Alignment explanation
Indices: 131437436--131437486 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
131437426 TATTTAACTT
131437436 AGGAACCCTATTCAGTTTAAAATA
1 AGGAACCCTATTCAGTTTAAAATA
131437460 AGGAACCCTATTCAGTTTAAAATA
1 AGGAACCCTATTCAGTTTAAAATA
131437484 AGG
1 AGG
131437487 TTACGTGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (24 bp):
AGGAACCCTATTCAGTTTAAAATA
Found at i:131440203 original size:20 final size:18
Alignment explanation
Indices: 131440161--131440203 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
131440151 TTCAATCAAA
* *
131440161 ATTTTGTTGTGTTTGATT
1 ATTTTGGTGTGTTTGACT
131440179 ATTTTGGTGTGTTTCGACCT
1 ATTTTGGTGTGTTT-GA-CT
131440199 ATTTT
1 ATTTT
131440204 TGTCAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 13 0.62
19 2 0.10
20 6 0.29
ACGTcount: A:0.12, C:0.07, G:0.21, T:0.60
Consensus pattern (18 bp):
ATTTTGGTGTGTTTGACT
Found at i:131440515 original size:29 final size:29
Alignment explanation
Indices: 131440483--131440564 Score: 82
Period size: 29 Copynumber: 2.8 Consensus size: 29
131440473 TTAAAAATTG
131440483 CAAAAGTTATAAAATTATATAAAAATGA-A
1 CAAAA-TTATAAAATTATATAAAAATGATA
*
131440512 CAAAATTAAAAAAATTAGTAT--AAATGATA
1 CAAAATT-ATAAAATTA-TATAAAAATGATA
*
131440541 CAAAAATATATAAATTAT-TAAAAA
1 CAAAATTATA-AAATTATATAAAAA
131440565 ATTGAAAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
27 1 0.02
28 11 0.25
29 29 0.66
30 3 0.07
ACGTcount: A:0.63, C:0.04, G:0.05, T:0.28
Consensus pattern (29 bp):
CAAAATTATAAAATTATATAAAAATGATA
Found at i:131440625 original size:18 final size:18
Alignment explanation
Indices: 131440604--131440646 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
131440594 ATAATAAATT
*
131440604 AAATATATATAAAT-TAAA
1 AAATATA-AAAAATGTAAA
131440622 AAATATAAAAAATGTAAA
1 AAATATAAAAAATGTAAA
131440640 AGAATAT
1 A-AATAT
131440647 TTTAAAACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 5 0.23
18 12 0.55
19 5 0.23
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (18 bp):
AAATATAAAAAATGTAAA
Found at i:131440629 original size:14 final size:14
Alignment explanation
Indices: 131440586--131440630 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 14
131440576 TAAAAAAAGC
131440586 TTAAAATAATAATAAA
1 TTAAAA-AAT-ATAAA
*
131440602 TTAAATATATATAAA
1 TTAAA-AAATATAAA
131440617 TTAAAAAATATAAA
1 TTAAAAAATATAAA
131440631 AAATGTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 8 0.31
15 10 0.38
16 7 0.27
17 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
TTAAAAAATATAAA
Found at i:131441395 original size:7 final size:7
Alignment explanation
Indices: 131441385--131441414 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
131441375 TTAATAAATA
131441385 ATATTAT
1 ATATTAT
131441392 ATATTAT
1 ATATTAT
131441399 ATATTAT
1 ATATTAT
*
131441406 ACATTAT
1 ATATTAT
131441413 AT
1 AT
131441415 GTATTACGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (7 bp):
ATATTAT
Found at i:131441800 original size:12 final size:12
Alignment explanation
Indices: 131441783--131441824 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
131441773 ACTTTTTGTA
131441783 TTCACAATTATG
1 TTCACAATTATG
131441795 TTCACAA-TAT-
1 TTCACAATTATG
**
131441805 AACACAATTATG
1 TTCACAATTATG
131441817 TTCACAAT
1 TTCACAAT
131441825 ATAAAACATA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
10 5 0.21
11 6 0.25
12 13 0.54
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (12 bp):
TTCACAATTATG
Found at i:131441810 original size:22 final size:22
Alignment explanation
Indices: 131441785--131441828 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
131441775 TTTTTGTATT
131441785 CACAATTATGTTCACAATATAA
1 CACAATTATGTTCACAATATAA
131441807 CACAATTATGTTCACAATATAA
1 CACAATTATGTTCACAATATAA
131441829 AACATAACTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (22 bp):
CACAATTATGTTCACAATATAA
Found at i:131444122 original size:51 final size:51
Alignment explanation
Indices: 131444046--131444147 Score: 177
Period size: 51 Copynumber: 2.0 Consensus size: 51
131444036 AGACTTTGTC
*
131444046 GTCCTCACTAATGTTGGCCACTGCCCTCAGGTTTGCTCTCTCATGAAACTA
1 GTCCTCACCAATGTTGGCCACTGCCCTCAGGTTTGCTCTCTCATGAAACTA
* *
131444097 GTCCTCCCCAATGTTGGCCACTGCCCTCAGGTTTGCTCTTTCATGAAACTA
1 GTCCTCACCAATGTTGGCCACTGCCCTCAGGTTTGCTCTCTCATGAAACTA
131444148 TGGTTCGGCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.19, C:0.32, G:0.18, T:0.31
Consensus pattern (51 bp):
GTCCTCACCAATGTTGGCCACTGCCCTCAGGTTTGCTCTCTCATGAAACTA
Found at i:131450956 original size:24 final size:24
Alignment explanation
Indices: 131450922--131450987 Score: 114
Period size: 24 Copynumber: 2.8 Consensus size: 24
131450912 ACTACAATGG
131450922 CGAGGAAGACAAACCTAAACCTGA
1 CGAGGAAGACAAACCTAAACCTGA
*
131450946 CTAGGAAGACAAACCTAAACCTGA
1 CGAGGAAGACAAACCTAAACCTGA
*
131450970 CGAGTAAGACAAACCTAA
1 CGAGGAAGACAAACCTAA
131450988 GCCAGATCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.47, C:0.24, G:0.18, T:0.11
Consensus pattern (24 bp):
CGAGGAAGACAAACCTAAACCTGA
Found at i:131451171 original size:3 final size:3
Alignment explanation
Indices: 131451163--131451187 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
131451153 ATTTATTAAG
131451163 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
131451188 GTAATCTCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:131451568 original size:3 final size:3
Alignment explanation
Indices: 131451560--131451600 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
131451550 TGATGTGGAA
* * *
131451560 ATT ATT ATT ATT AAT ATT AAT ATT GTT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
131451601 GTAATCTCTG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:131451688 original size:21 final size:21
Alignment explanation
Indices: 131451658--131451707 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 21
131451648 GTGGTATATG
131451658 GTTAGTCAAGTGGTTAGTATTT
1 GTTA-TCAAGTGGTTAGTATTT
*
131451680 GTTATCAAGTGGTTAGTGTTT
1 GTTATCAAGTGGTTAGTATTT
131451701 GTTATCA
1 GTTATCA
131451708 CTCACTAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.22, C:0.06, G:0.26, T:0.46
Consensus pattern (21 bp):
GTTATCAAGTGGTTAGTATTT
Found at i:131452077 original size:3 final size:3
Alignment explanation
Indices: 131452069--131452116 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
131452059 ATGCATTAAG
131452069 TTA TTA TTA TTA TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
131452116 T
1 T
131452117 GTAATCTCCA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 42 0.95
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:131452501 original size:3 final size:3
Alignment explanation
Indices: 131452493--131452524 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
131452483 TGTGGAAATA
131452493 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
131452525 GTAATCTCTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:131452611 original size:21 final size:21
Alignment explanation
Indices: 131452582--131452631 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
131452572 CTGGTATACG
131452582 GTTAGTCAAGTGGTTAATATTT
1 GTTA-TCAAGTGGTTAATATTT
* *
131452604 GTTATCAAGTGGTTAGTGTTT
1 GTTATCAAGTGGTTAATATTT
131452625 GTTATCA
1 GTTATCA
131452632 CTCACTAGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.24, C:0.06, G:0.24, T:0.46
Consensus pattern (21 bp):
GTTATCAAGTGGTTAATATTT
Found at i:131452834 original size:42 final size:42
Alignment explanation
Indices: 131452779--131452876 Score: 133
Period size: 42 Copynumber: 2.3 Consensus size: 42
131452769 AGAAGGAAGC
* *
131452779 AGCACAGGGTCCTTAGAGATACTTGTAGGTGAAGAAGGGAAT
1 AGCACAGGATCCTTAGAGATACTTGCAGGTGAAGAAGGGAAT
* * *
131452821 AGCACATGATCCTTAGAGATACTTGCAGGTGAAGAATGGAGT
1 AGCACAGGATCCTTAGAGATACTTGCAGGTGAAGAAGGGAAT
* *
131452863 AGCACGGGGTCCTT
1 AGCACAGGATCCTT
131452877 TTCAAGTAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.31, C:0.15, G:0.32, T:0.22
Consensus pattern (42 bp):
AGCACAGGATCCTTAGAGATACTTGCAGGTGAAGAAGGGAAT
Found at i:131453015 original size:64 final size:65
Alignment explanation
Indices: 131452943--131453074 Score: 239
Period size: 64 Copynumber: 2.0 Consensus size: 65
131452933 AATTGATGGA
* *
131452943 ATTAATAATTTAAAAGATATTAATAAATGGGAAAGTAAAAAAAA-TGTTTTGATGATGATACGTT
1 ATTAATAATTTAAAAGATATTAATAAATAGGAAAGTAAAAAAAATTGTTTTGATGATGATACATT
131453007 ATTAATAATTTAAAAGATATTAATAAATAGGAAAGTAAAAAAAATTGTTTTGATGATGATACATT
1 ATTAATAATTTAAAAGATATTAATAAATAGGAAAGTAAAAAAAATTGTTTTGATGATGATACATT
131453072 ATT
1 ATT
131453075 TTATTATTAT
Statistics
Matches: 65, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
64 43 0.66
65 22 0.34
ACGTcount: A:0.49, C:0.02, G:0.14, T:0.36
Consensus pattern (65 bp):
ATTAATAATTTAAAAGATATTAATAAATAGGAAAGTAAAAAAAATTGTTTTGATGATGATACATT
Found at i:131453493 original size:3 final size:3
Alignment explanation
Indices: 131453485--131453525 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
131453475 TGGTGTGGAA
*
131453485 ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
131453526 GTAATCTCCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:131453612 original size:21 final size:21
Alignment explanation
Indices: 131453583--131453632 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
131453573 CTGATATATG
131453583 GTTAGTCAAGTCGTTAGTATTT
1 GTTA-TCAAGTCGTTAGTATTT
* *
131453605 GTTATCAAGTGGTTAGTGTTT
1 GTTATCAAGTCGTTAGTATTT
131453626 GTTATCA
1 GTTATCA
131453633 CTCACTAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.22, C:0.08, G:0.24, T:0.46
Consensus pattern (21 bp):
GTTATCAAGTCGTTAGTATTT
Found at i:131453831 original size:42 final size:42
Alignment explanation
Indices: 131453769--131453861 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
131453759 GCAAAAAGGA
* * * *
131453769 AAGAAAGGAGCAACATAAGGTCCTTAGAGATACTTGCAGGTG
1 AAGAAGGGAACAACACAAGGTCCTTAGAGATACTTGCAAGTG
*
131453811 AAGAAGGGAACAACACAAGGTTCTTAGAGATACTTGCAAGTG
1 AAGAAGGGAACAACACAAGGTCCTTAGAGATACTTGCAAGTG
131453853 AAGAAGGGA
1 AAGAAGGGA
131453862 GCAGCACAGG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.41, C:0.13, G:0.29, T:0.17
Consensus pattern (42 bp):
AAGAAGGGAACAACACAAGGTCCTTAGAGATACTTGCAAGTG
Found at i:131453904 original size:10 final size:10
Alignment explanation
Indices: 131453889--131453914 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
131453879 TCAAGTAAAT
131453889 ATTTCATGCG
1 ATTTCATGCG
131453899 ATTTCATGCG
1 ATTTCATGCG
131453909 ATTTCA
1 ATTTCA
131453915 AGTAAAGACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.19, G:0.15, T:0.42
Consensus pattern (10 bp):
ATTTCATGCG
Found at i:131454045 original size:3 final size:3
Alignment explanation
Indices: 131454037--131454073 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
131454027 ATGTATTAAT
131454037 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
131454074 GTAATCGCTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:131454550 original size:21 final size:21
Alignment explanation
Indices: 131454506--131454564 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
131454496 AGTTACAATC
* *
131454506 TAGTATATGGTTACTCAAGTGGT
1 TAGTAT-TTGTTA-TCATGTGGT
*
131454529 TAGTATTTTTTATCATGTGGT
1 TAGTATTTGTTATCATGTGGT
*
131454550 TAGTGTTTGTTATCA
1 TAGTATTTGTTATCA
131454565 CTCACTAGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 21 0.68
22 4 0.13
23 6 0.19
ACGTcount: A:0.22, C:0.07, G:0.22, T:0.49
Consensus pattern (21 bp):
TAGTATTTGTTATCATGTGGT
Found at i:131456608 original size:19 final size:19
Alignment explanation
Indices: 131456583--131456673 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
131456573 ATAATCTTCA
131456583 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
131456602 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
131456621 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
131456638 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
131456656 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
131456674 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:131456623 original size:14 final size:15
Alignment explanation
Indices: 131456604--131456659 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
131456594 TCTTAGATGT
131456604 GATATG-CAATCTTA
1 GATATGACAATCTTA
131456618 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
131456635 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
131456653 GATATGA
1 GATATGA
131456660 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:131456653 original size:35 final size:37
Alignment explanation
Indices: 131456583--131456680 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 37
131456573 ATAATCTTCA
*
131456583 ATGATATGCAATCTTAGATGTGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
131456621 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
131456656 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
131456681 ATTTTGTAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
35 22 0.39
36 18 0.32
37 10 0.18
38 6 0.11
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:131456699 original size:22 final size:22
Alignment explanation
Indices: 131456583--131456696 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
131456573 ATAATCTTCA
131456583 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
131456602 GTGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
131456621 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
131456638 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
131456656 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
131456678 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
131456697 GATTTAATTT
Statistics
Matches: 84, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 32 0.38
22 8 0.10
23 12 0.14
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:131462340 original size:10 final size:10
Alignment explanation
Indices: 131462325--131462389 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 10
131462315 TTTTTTTCAA
131462325 AAAAAAAG-G
1 AAAAAAAGAG
* *
131462334 GAAAAAAGAA
1 AAAAAAAGAG
131462344 AAAAAAAGAG
1 AAAAAAAGAG
* *
131462354 AAAAAAATAA
1 AAAAAAAGAG
*
131462364 AAAGAAAAAAG
1 AAA-AAAAGAG
131462375 AGAAAAAAGA-
1 A-AAAAAAGAG
131462385 AAAAA
1 AAAAA
131462390 GAAAAATGGA
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
9 11 0.25
10 20 0.45
11 11 0.25
12 2 0.05
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (10 bp):
AAAAAAAGAG
Found at i:131462344 original size:7 final size:7
Alignment explanation
Indices: 131462334--131462395 Score: 67
Period size: 7 Copynumber: 8.9 Consensus size: 7
131462324 AAAAAAAAGG
131462334 GAAAAAA
1 GAAAAAA
131462341 G-AAAAA
1 GAAAAAA
*
131462347 -AAAAGA
1 GAAAAAA
131462353 GAAAAAA
1 GAAAAAA
131462360 -ATAAAAA
1 GA-AAAAA
131462367 GAAAAAAGA
1 G-AAAAA-A
131462376 GAAAAAA
1 GAAAAAA
131462383 GAAAAAA
1 GAAAAAA
131462390 GAAAAA
1 GAAAAA
131462396 TGGAGAGGCC
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
6 10 0.21
7 25 0.53
8 9 0.19
9 3 0.06
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.02
Consensus pattern (7 bp):
GAAAAAA
Found at i:131462371 original size:23 final size:23
Alignment explanation
Indices: 131462326--131462395 Score: 87
Period size: 23 Copynumber: 3.2 Consensus size: 23
131462316 TTTTTTCAAA
*
131462326 AAAAAAGGGAAAAAAG---AAA-
1 AAAAAAGAGAAAAAAGAAAAAAG
131462345 AAAAAAGAGAAAAAA-ATAAAAAG
1 AAAAAAGAGAAAAAAGA-AAAAAG
131462368 AAAAAAGAGAAAAAAGAAAAAAG
1 AAAAAAGAGAAAAAAGAAAAAAG
131462391 AAAAA
1 AAAAA
131462396 TGGAGAGGCC
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
19 14 0.32
22 3 0.07
23 26 0.59
24 1 0.02
ACGTcount: A:0.83, C:0.00, G:0.16, T:0.01
Consensus pattern (23 bp):
AAAAAAGAGAAAAAAGAAAAAAG
Found at i:131462383 original size:9 final size:9
Alignment explanation
Indices: 131462326--131462389 Score: 57
Period size: 9 Copynumber: 7.6 Consensus size: 9
131462316 TTTTTTCAAA
*
131462326 AAAAAAGGG
1 AAAAAAGAG
131462335 AAAAAAGA-
1 AAAAAAGAG
*
131462343 AAAAAAAAG
1 AAAAAAGAG
131462352 AGAAAAA-A-
1 A-AAAAAGAG
*
131462360 ATAAAA-AG
1 AAAAAAGAG
131462368 AAAAAAGAG
1 AAAAAAGAG
131462377 AAAAAAGA-
1 AAAAAAGAG
131462385 AAAAA
1 AAAAA
131462390 GAAAAATGGA
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
7 5 0.11
8 18 0.38
9 19 0.40
10 5 0.11
ACGTcount: A:0.83, C:0.00, G:0.16, T:0.02
Consensus pattern (9 bp):
AAAAAAGAG
Found at i:131463445 original size:41 final size:41
Alignment explanation
Indices: 131463399--131463531 Score: 116
Period size: 41 Copynumber: 3.3 Consensus size: 41
131463389 GATCTTATCT
*
131463399 CCCTAAGAAATAGTGGAGCAGATCGAAGACTTGCCTTAATC
1 CCCTAAGAAGTAGTGGAGCAGATCGAAGACTTGCCTTAATC
* * * *
131463440 CCCTAAGTAGTAG-GGTAACAGGTTCGCAGA--T--CTT-ATC
1 CCCTAAGAAGTAGTGG-AGCA-GATCGAAGACTTGCCTTAATC
* *
131463477 TCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
1 -CCCTAAGAAGTAGTGGAGCAGATCGAAGACTTGCCTTAATC
* *
131463519 CCTTAAGCAGTAG
1 CCCTAAGAAGTAG
131463532 GGTAACAGGT
Statistics
Matches: 72, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
37 10 0.14
38 18 0.25
39 2 0.03
40 3 0.04
41 29 0.40
42 10 0.14
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (41 bp):
CCCTAAGAAGTAGTGGAGCAGATCGAAGACTTGCCTTAATC
Found at i:131463583 original size:43 final size:43
Alignment explanation
Indices: 131463517--131463828 Score: 288
Period size: 43 Copynumber: 7.3 Consensus size: 43
131463507 CTCGCCTTAA
131463517 TCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
1 TCCC-TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
* *
131463561 TCTCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTATC
1 TCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
*
131463604 TCCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTATC
1 TCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
* * ** * *
131463647 TCCCTAAGCAGTAGTGG-AGCA-GATCGA--TGACTCG-CCTTAATC
1 TCCCTAAGCAGTAG-GGTAACAGGTTAAATTTG-C-AGATCTT-ATC
*
131463689 -CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATC
1 TCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
* * * * * *
131463731 TCCTTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C-G-CCTTAATC
1 TCCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATC
* * *
131463773 -CCCTAAGCGGTAGGGTAATAGGTTAAATTTGTAGATCTTATC
1 TCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
131463815 TCCCTAAGCAGTAG
1 TCCCTAAGCAGTAG
131463829 TGGAGCAGAT
Statistics
Matches: 214, Mismatches: 34, Indels: 41
0.74 0.12 0.14
Matches are distributed among these distances:
39 1 0.00
40 9 0.04
41 37 0.17
42 20 0.09
43 134 0.63
44 12 0.06
45 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (43 bp):
TCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
Found at i:131463727 original size:84 final size:84
Alignment explanation
Indices: 131463346--131463880 Score: 742
Period size: 84 Copynumber: 6.4 Consensus size: 84
131463336 CAAAATTCAG
* * * * *
131463346 CGCCTTAATCGCCTAAGCGGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGAAATA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
131463411 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* * *
131463430 TGCCTTAATCCCCTAAGTAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
131463490 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
131463509 CGCCTTAATCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCTCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * ** ***
131463574 G-GGTAACAGGTTAAATTTGT
66 GTGG-AGCAGATCGAA-GACT
* * *
131463594 AGATCTT-ATCTCCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAG
1 CG-CCTTAATC-CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAG
*
131463658 TAGTGGAGCAGATCGATGACT
64 TAGTGGAGCAGATCGAAGACT
* *
131463679 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCTTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
131463744 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* * *
131463763 CGCCTTAATCCCCTAAGCGGTAGGGTAATAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
131463828 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
*
131463847 CGCCTTAATCCTCTAAGCAGTAGGGTAACAGGTT
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTT
131463881 CGCAGATCTT
Statistics
Matches: 393, Mismatches: 47, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
79 72 0.18
83 2 0.01
84 245 0.62
85 10 0.03
86 62 0.16
87 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACT
Found at i:131463827 original size:254 final size:249
Alignment explanation
Indices: 131463357--131463828 Score: 755
Period size: 254 Copynumber: 1.9 Consensus size: 249
131463347 GCCTTAATCG
*
131463357 CCTAAGCGGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGAAATAGTGGAGCAGAT
1 CCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGAAATAGTGGAGCAGAT
* * *
131463422 CGAAGACTTGCCTTAATCCCCTAAGTAGTAGGGTAACAGGTTCGCAGATCTTATCTCCCTAAGCA
66 CGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCGCAAATCTTATCTCCCTAAGCA
*
131463487 GTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCA
131 GTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA
*
131463552 GATCTTATCTCTCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTC
196 GATCTTATCTCCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTC
** * *
131463606 CCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
1 CCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGAAATAGTGGAGCAGAT
* * *
131463671 CGATGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCTT
66 CGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTCGCAAATCTTATCTCCCT
* *
131463736 AAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCGGTAGGGTAATAGGTTAAAT
126 AAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAAT
*
131463801 TTGTAGATCTTATCTCCCTAAGCAGTAG
191 TTGCAGATCTTATCTCCCTAAGCAGTAG
131463829 TGGAGCAGAT
Statistics
Matches: 202, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
249 97 0.48
254 105 0.52
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (249 bp):
CCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGAAATAGTGGAGCAGAT
CGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCGCAAATCTTATCTCCCTAAGCA
GTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA
GATCTTATCTCCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTC
Found at i:131465568 original size:29 final size:28
Alignment explanation
Indices: 131465536--131465638 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
131465526 GTGACGAGAT
* *
131465536 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
131465565 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
131465594 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
131465623 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
131465639 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:131473604 original size:29 final size:29
Alignment explanation
Indices: 131473545--131473647 Score: 93
Period size: 29 Copynumber: 3.6 Consensus size: 29
131473535 GTGACGAGAT
* * * *
131473545 TGGCACTGAGCGTGTGAGCTTGTAAT-GTA
1 TGGCACTAAGTGTGCGAGCTTG-AATCATA
* *
131473574 TGGCACTAAGTGTGCGAGTTTGGA-CTATA
1 TGGCACTAAGTGTGCGAGCTTGAATC-ATA
* * *
131473603 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAATCATA
131473632 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
131473648 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 12, Indels: 6
0.77 0.16 0.08
Matches are distributed among these distances:
28 1 0.02
29 57 0.97
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAATCATA
Found at i:131475274 original size:84 final size:84
Alignment explanation
Indices: 131475111--131475318 Score: 276
Period size: 84 Copynumber: 2.5 Consensus size: 84
131475101 GGTGTGTTAC
* * * * * *
131475111 ATCTTATCTCCCTAAGAAGTAGCAGAGCAAATTGACGACGACTCGCCTTAATCCCCTAAGTAGTA
1 ATCTTATCTCCCTAAGCAGTAGCGGAGCAGA-T--CGAAGACCCGCCTTAATCCCCTAAGCAGTA
* *
131475176 GGGTAACAGGTTAAATTTGCAG
63 AGGTAACAAGTTAAATTTGCAG
* *
131475198 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCTTTAATCCCCTAAGCAGTAAGG
1 ATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACCCGCCTTAATCCCCTAAGCAGTAAGG
*
131475263 TAACAAGTTAAATTTGTAG
66 TAACAAGTTAAATTTGCAG
131475282 ATCTTA--TCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
1 ATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
131475319 AATGCACCTT
Statistics
Matches: 109, Mismatches: 12, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
82 30 0.28
84 51 0.47
86 1 0.01
87 27 0.25
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (84 bp):
ATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACCCGCCTTAATCCCCTAAGCAGTAAGG
TAACAAGTTAAATTTGCAG
Found at i:131476114 original size:19 final size:19
Alignment explanation
Indices: 131476090--131476168 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
131476080 AATCTTTAAG
131476090 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
131476109 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
131476128 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
131476145 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
131476166 GAT
1 GAT
131476169 CTTGTAATCT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
21 9 0.17
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:131476137 original size:36 final size:37
Alignment explanation
Indices: 131476096--131476168 Score: 121
Period size: 36 Copynumber: 2.0 Consensus size: 37
131476086 TAAGGATATG
131476096 CAATCTTAGATATGATATGCAATATT-AGATATGATA
1 CAATCTTAGATATGATATGCAATATTAAGATATGATA
*
131476132 CAATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 CAATCTTAGATATGATATGCAATATT-AAGATATGAT
131476169 CTTGTAATCT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 25 0.74
38 9 0.26
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.36
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATATTAAGATATGATA
Found at i:131477625 original size:19 final size:19
Alignment explanation
Indices: 131477575--131477631 Score: 84
Period size: 18 Copynumber: 3.2 Consensus size: 19
131477565 TGGTTTCGAC
131477575 AGATATGATA--CAATCTT
1 AGATATGATATGCAATCTT
*
131477592 AGATATTAT-TGCAATCTT
1 AGATATGATATGCAATCTT
131477610 AGATATGATATGCAATCTT
1 AGATATGATATGCAATCTT
131477629 AGA
1 AGA
131477632 AGATATGATT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.23
18 15 0.43
19 12 0.34
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.37
Consensus pattern (19 bp):
AGATATGATATGCAATCTT
Found at i:131477638 original size:22 final size:23
Alignment explanation
Indices: 131477610--131477654 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
131477600 TTGCAATCTT
131477610 AGATATGA-TATGCAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
* *
131477632 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
131477655 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (23 bp):
AGATATGATTATGCAATCTTAGA
Found at i:131479287 original size:39 final size:39
Alignment explanation
Indices: 131479233--131479509 Score: 448
Period size: 39 Copynumber: 7.1 Consensus size: 39
131479223 CATAAACAAA
131479233 ATATAACACCAGCACGAATGCCTTC-GAGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCAG-GACTTAGCCCGG
* *
131479272 ATATAGCACCAGCACGAATGCCTTCAGGATTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCAGGACTTAGCCCGG
*
131479311 ATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCAGGACTTAGCCCGG
* * *
131479350 ATTTAGCACCAGCACGAATGCCTTCGGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCAGGACTTAGCCCGG
*
131479389 ATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCAGGACTTAGCCCGG
*
131479428 ATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCAGGACTTAGCCCGG
**
131479467 ATATAACACCAGCACGAATGCCTTTGGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCAGGACTTAGCCCGG
131479506 ATAT
1 ATAT
131479510 TTTTCCAGCA
Statistics
Matches: 221, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 220 1.00
40 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (39 bp):
ATATAACACCAGCACGAATGCCTTCAGGACTTAGCCCGG
Found at i:131479545 original size:39 final size:39
Alignment explanation
Indices: 131479502--131479592 Score: 121
Period size: 39 Copynumber: 2.3 Consensus size: 39
131479492 GGGACTTAGC
* *
131479502 CCGGATATTTTTCCAGCACT-TAGCCTGCGGACTTTAAGT
1 CCGGATATTTTTCCAGCA-TAAAGCCTGCGGACTTCAAGT
* *
131479541 CCGGATATATTTCCAGCATAAAGCCTGTGGACTTCAAGT
1 CCGGATATTTTTCCAGCATAAAGCCTGCGGACTTCAAGT
131479580 CCGGATATATTTT
1 CCGGATAT-TTTT
131479593 TCCAATACCA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
38 1 0.02
39 41 0.91
40 3 0.07
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATAAAGCCTGCGGACTTCAAGT
Found at i:131482258 original size:42 final size:42
Alignment explanation
Indices: 131482207--131482286 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
131482197 AAGGGAGTAG
* *
131482207 CACAAGGTCCTTATAGATACTTGTAGGTGAAGAAGGGAACAA
1 CACAAGGTCCTTAGAGATACTTGCAGGTGAAGAAGGGAACAA
* *
131482249 CACAGGGTCCTTAGAGATACTTGCAGTTGAAGAAGGGA
1 CACAAGGTCCTTAGAGATACTTGCAGGTGAAGAAGGGA
131482287 GCAGCACGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (42 bp):
CACAAGGTCCTTAGAGATACTTGCAGGTGAAGAAGGGAACAA
Found at i:131482455 original size:3 final size:3
Alignment explanation
Indices: 131482447--131482479 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
131482437 ATGTATTAAG
131482447 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
131482480 AATTTCTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:131482863 original size:3 final size:3
Alignment explanation
Indices: 131482848--131482897 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
131482838 TGGTGTGGAA
*
131482848 ATT ATT ATC ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
131482896 AT
1 AT
131482898 GTAATCTCCG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:131483002 original size:21 final size:21
Alignment explanation
Indices: 131482955--131483004 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
131482945 CTGGTATATG
131482955 GTTAGTCAAGTGGTTAGCATTT
1 GTTA-TCAAGTGGTTAGCATTT
* **
131482977 TTTATCAAGTGGTTAGTGTTT
1 GTTATCAAGTGGTTAGCATTT
131482998 GTTATCA
1 GTTATCA
131483005 CTTACTAGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.22, C:0.08, G:0.24, T:0.46
Consensus pattern (21 bp):
GTTATCAAGTGGTTAGCATTT
Found at i:131483785 original size:3 final size:3
Alignment explanation
Indices: 131483777--131483817 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
131483767 TGGTGTGGAA
131483777 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
131483818 GTAATCTCCG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:131483904 original size:21 final size:21
Alignment explanation
Indices: 131483875--131483924 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
131483865 CTGGTATATG
131483875 GTTAGTCAAGTAGTTAGTATTT
1 GTTA-TCAAGTAGTTAGTATTT
* * *
131483897 GTTATCAAGTGGTTCGTGTTT
1 GTTATCAAGTAGTTAGTATTT
131483918 GTTATCA
1 GTTATCA
131483925 CTCACTAGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.22, C:0.08, G:0.24, T:0.46
Consensus pattern (21 bp):
GTTATCAAGTAGTTAGTATTT
Found at i:131484115 original size:42 final size:42
Alignment explanation
Indices: 131484051--131484133 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
131484041 ACGAAAAGGA
* * * *
131484051 AAGAAGGGAGCAACAAATGGTCCTTCGAGGTACTTGCAGGTG
1 AAGAAGGGAACAACAAAGGGTCCTTAGAGATACTTGCAGGTG
* *
131484093 AAGAAGGGAACAACACAGGGTCCTTAGAGATACTTGGAGGT
1 AAGAAGGGAACAACAAAGGGTCCTTAGAGATACTTGCAGGT
131484134 AAAAAATGAG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.34, C:0.16, G:0.33, T:0.18
Consensus pattern (42 bp):
AAGAAGGGAACAACAAAGGGTCCTTAGAGATACTTGCAGGTG
Found at i:131484315 original size:3 final size:3
Alignment explanation
Indices: 131484307--131484331 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
131484297 ATGTATTAAG
131484307 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
131484332 GTAATCTTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:131484718 original size:3 final size:3
Alignment explanation
Indices: 131484712--131484737 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
131484702 GAAATTATTA
131484712 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
131484738 ATTATTATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:131484840 original size:21 final size:21
Alignment explanation
Indices: 131484815--131484855 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
131484805 GGTTTGTCAA
131484815 GTGGTTAGTATTTGTTATCAT
1 GTGGTTAGTATTTGTTATCAT
*
131484836 GTGGTTAGTGTTTGTTATCA
1 GTGGTTAGTATTTGTTATCA
131484856 CTCACTAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.05, G:0.27, T:0.51
Consensus pattern (21 bp):
GTGGTTAGTATTTGTTATCAT
Found at i:131485100 original size:42 final size:41
Alignment explanation
Indices: 131485012--131485100 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 41
131485002 TAGCAAAGGG
* *
131485012 TCCTTAGAGGTACTTGCAGGTGAAGAAGGTAACCACACAGGG
1 TCCTTAGAGATACTTGCAGGTGAAGAAGG-AACCACACAGGA
*
131485054 TCCTTAGAGATACTTGCAGGTGAAGAA-GAGACCAGCACTGGA
1 TCCTTAGAGATACTTGCAGGTGAAGAAGGA-ACCA-CACAGGA
131485096 TCCTT
1 TCCTT
131485101 TTCAAGTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
40 1 0.02
41 5 0.12
42 36 0.86
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.21
Consensus pattern (41 bp):
TCCTTAGAGATACTTGCAGGTGAAGAAGGAACCACACAGGA
Found at i:131485650 original size:3 final size:3
Alignment explanation
Indices: 131485642--131485673 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
131485632 TGGTGTGGAA
131485642 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
131485674 GTAATCTCTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:131485760 original size:21 final size:21
Alignment explanation
Indices: 131485731--131485780 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
131485721 CTGGTATATG
*
131485731 GTTAGTCAAGTGGTTAGC-ATTT
1 GTTA-TCAAATGGTTA-CTATTT
*
131485753 GTTATCAAATGGTTACTGTTT
1 GTTATCAAATGGTTACTATTT
131485774 GTTATCA
1 GTTATCA
131485781 CTCACTAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 20 0.80
22 4 0.16
ACGTcount: A:0.24, C:0.10, G:0.22, T:0.44
Consensus pattern (21 bp):
GTTATCAAATGGTTACTATTT
Found at i:131486022 original size:42 final size:41
Alignment explanation
Indices: 131485917--131486022 Score: 140
Period size: 42 Copynumber: 2.5 Consensus size: 41
131485907 GCAAAAAAGA
*
131485917 AAGAAGGAAGCAACACAGGGTCCTTAGAGATACTTGCAAGTG
1 AAGAAGG-AGCAACACAGGGTCCTTAGACATACTTGCAAGTG
* *
131485959 AAGAAGGGAGCAACAAAGGGTCCTTAGACATACTTGCAGGTG
1 AAGAA-GGAGCAACACAGGGTCCTTAGACATACTTGCAAGTG
* *
131486001 AAGATAGGAGCAGCACGGGGTC
1 AAGA-AGGAGCAACACAGGGTC
131486023 TTTTTCAAGT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
42 53 0.95
43 3 0.05
ACGTcount: A:0.36, C:0.17, G:0.32, T:0.15
Consensus pattern (41 bp):
AAGAAGGAGCAACACAGGGTCCTTAGACATACTTGCAAGTG
Found at i:131486127 original size:925 final size:923
Alignment explanation
Indices: 131482107--131489297 Score: 7166
Period size: 925 Copynumber: 7.6 Consensus size: 923
131482097 GTTACACTAG
* * * *
131482107 TGATACTAAGAATATTCAGCAAATACTATTCTCTGTATTTCGTTCATTATCACTTT-TTTAGTAT
1 TGATATTAAGAATATTCAGCAAATACTATTCTCTGTATTTCGTTCATTATC-GTTTCTTCAATAT
* * * * * * *
131482171 AGTTCTAACAAGGACGAAAAGGAAAGAAGGGAGTAGCACAA-GGTCCTTATAGATACTTGTAGGT
65 ACTTCTAACAAGGACAAAAAAGAAAGAAGGGAGCAACA-AAGGGTCCTTAGAGATACTTGCAGGT
* * * * *
131482235 GAAGAAGGGAACAACACAGGGTCCTTAGAGATACTTGCAGTTGAAGAAGGGAGCAGCACGAGTTC
129 GAAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTGCAGGTGAAGAA-GGAGCAGCACGGGGTC
* *
131482300 ATTTTCAAG--AA-A----AT---ATTTCATGCGATTTCAAGTAAAGACTTTTAAATCAAATTGA
193 CTTTTCAAGTAAATATTTCATGCGATTTCATGAGATTTCAAGTAAAGACTTTTAAATCAAATTGA
* * * **
131482355 TGGAAATAATAATTTAAAAGATATTAATAAATGGGAAAGTAAAAAAA-TATTTTG--A-TGATTT
258 TGGAATTAATAATTTAAAAGATATTAATAAATGAGAAAGTAAAAAAATTGTTTTGATAGTGATAC
*
131482416 GTTATTTTATTATTATGTGAAATGTATTAAGTTATTATTATTATTATTATTATTATTATTATTAA
323 GTTATTTTATTATTATGTGAAATGTATTAAG----------------T-TTATTATTA-T-GT-A
* ** * * * * *
131482481 ATTTCTATTGTTTCCTTTTCACTGCAATCAAAATCGGTGGAATCTTACGATATTAGACATCACCA
368 ATCTCCGTTGATTCCTTTGCACTGCAATCAAAGTCGGTGGAATCCTACGATATTAGACATCTCCA
* **
131482546 GCAATCTGTGATCCCATGACGTACTGTTCATCTTCTTCCTCCCCTTA-AAA-AAAAAAGTTCAAA
433 GCAATCTGTGATCCCATGCCGTACTGTTCATCTTCTTCCTCCCCTTACAAACAAAAAAGGCCAAA
131482609 CACACAATTATCACTAGGATTCAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGAAAAGG
498 CACACAATTATCACTAGGATTCAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGAAAAGG
* * **
131482674 AGCATTAAGGATAAAAGGAAGAAGGTACGTAGCATAAGTGAAGAAAGGTGATGAAGGGAGCAGTA
563 AGCATTAAGGACAAAAGGAAGAAGGTACGTAGCATAAGTGAAGAAAGGTGAAGAAGGGAGCAACA
* *
131482739 ATTGTTTGCTCAACAGTGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCC
628 ATTGTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCC
*
131482804 AAATTGTATCATTGTCCTCTGTGGAAATTATTTTTGGTGTGGAAATTATTATCATTATTATTATT
693 AAATTGTATCATAGTCCTCTGT-GAAATTATTTTTGGTGTGG--------------A--A--ATT
*
131482869 ATTATTATTATTATTATTATTATTATTATGTAATCTCCGTAGATTCCTTTGCACTGCAATCACAG
739 ATTATTATTATTATTATTATTATTATTATGTAATCTCCGTTGATTCCTTTGCACTGCAATCACAG
* *
131482934 TAAGTTACAATCTGGTATATGGTTAGTCAAGTGGTTAGCATTTTTTATCAAGTGGTTAGTGTTTG
804 TCAGTTACAATCTGGTATATGGTTAGTCAAGTGGTTAGCATTTGTTATCAAGTGGTTAGTGTTTG
* *
131482999 TTATCACTTACTAGTGTATATAAGTATCATTTTTGTACAGGCTCACCAAAGCTAA
869 TTATCACTCACTAGTGTATATAAGTATCATTTCTGTACAGGCTCACCAAAGCTAA
* *
131483054 TGATATTAAGAATATTCAGTAAATACTATTCTCTGTATTTCGTTCATTATCATTTCTTCAATATA
1 TGATATTAAGAATATTCAGCAAATACTATTCTCTGTATTTCGTTCATTATCGTTTCTTCAATATA
* * * * *
131483119 CTTCTAACAAGGGCAAAAAACAAAGAAGAGAGCAATACAA-GGTCCTTAGAGATACATGCAGGTG
66 CTTCTAACAAGGACAAAAAAGAAAGAAGGGAGCAACA-AAGGGTCCTTAGAGATACTTGCAGGTG
* * * * * * ** * *
131483183 AAGAAGGGAGCAGC-ACGAGATCCTTCTAAAGTAAATA-TTTCATGTGATTTCATACGATTC--C
130 AAGAAGGGAGCAACAAAG-GGTCC-T-T--AG-AGATACTTGCAGGTGA--AGA-AGGA-GCAGC
* ******* * * * * * * *
131483244 AAGAAAAGAATTTAAAATCAA-A-TTGATG-GAATTAAT-A-ATTT--A--AAAGA-TATT-AAT
185 ACGGGGTCCTTTTCAAGTAAATATTTCATGCGATTTCATGAGATTTCAAGTAAAGACTTTTAAAT
* * * * * * **
131483298 -AAA-TGA-GAAAGTAA-AA---AAATTG-TTTTGAT-ATTGATACGTTAGTAAAAAAATTGTTT
250 CAAATTGATGGAATTAATAATTTAAA-AGATATTAATAAATG--A-GAAAGTAAAAAAATTGTTT
* ** * *
131483354 TGATATTGATATATTATTTTCTTATTATGTGAAAAGTATTAAGTTATTATTATTATTATGTAATC
311 TGATAGTGATACGTTATTTTATTATTATGTGAAATGTATTAAG----T-TTATTATTATGTAATC
* * *
131483419 TCCGTTGATTCCTTTGCACTGCAATCAAAATCGGTGGAATCATACGATATTAGACAAT-TCTAGC
371 TCCGTTGATTCCTTTGCACTGCAATCAAAGTCGGTGGAATCCTACGATATTAGAC-ATCTCCAGC
*
131483483 AATCTGTGATCCCATGACGTACTGTTCATCTTCTTCC-CCCACTTACAAACAAAAAAGGCCAAAA
435 AATCTGTGATCCCATGCCGTACTGTTCATCTTCTTCCTCCC-CTTACAAACAAAAAAGGCC-AAA
*
131483547 CACATAATTATCACTAGGATTCAAAATCTCTAATATCTG--AT---AT----AA-AATGAAAAGG
498 CACACAATTATCACTAGGATTCAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGAAAAGG
* * *
131483602 AGCATTAAGGAAAAAAAAGAAGAAGGTACGTAGCATAGGTGAAGAAAGGTGAAGAAGGGAGCAAC
563 AGCATTAAGG-ACAAAAGGAAGAAGGTACGTAGCATAAGTGAAGAAAGGTGAAGAAGGGAGCAAC
* * *
131483667 AATTGTCTGTTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGAAAATATTTCATGTGATTTC
627 AATTGTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTC
*
131483732 CAAACTGTATCATAGTCCTCTGTGAAAATTATTTTTGGTGTGGAAATTATTATTATTATTATTAT
692 CAAATTGTATCATAGTCCTCTGTG-AAATTATTTTTGGTGTGG-----A--A--ATTATTATTAT
* * *
131483797 TATTATTATTATTATTATTATGTAATCTCCGTTAATTCCTTTACACTGCAATCACAGTCAGTTAG
747 TATTATTATTATTATTATTATGTAATCTCCGTTGATTCCTTTGCACTGCAATCACAGTCAGTTAC
* * *
131483862 AATCTGGTATATGGTTAGTCAAGTAGTTAGTATTTGTTATCAAGTGGTTCGTGTTTGTTATCACT
812 AATCTGGTATATGGTTAGTCAAGTGGTTAGCATTTGTTATCAAGTGGTTAGTGTTTGTTATCACT
*
131483927 CAC---------T-AGTATCATTTCTGTACAGGCTCACCGAAGCTAA
877 CACTAGTGTATATAAGTATCATTTCTGTACAGGCTCACCAAAGCTAA
* * * *
131483964 TGATACTAAGAATATTCAGCAAATATTATTCTCTGTATTTCGTTCATTATCGTTTCTGCATTATA
1 TGATATTAAGAATATTCAGCAAATACTATTCTCTGTATTTCGTTCATTATCGTTTCTTCAATATA
* * * * * * *
131484029 TTTCTAACAAGTACGAAAAGGAAAGAAGGGAGCAACAAATGGTCCTTCGAGGTACTTGCAGGTGA
66 CTTCTAACAAGGACAAAAAAGAAAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTGCAGGTGA
* * * * * * *
131484094 AGAAGGGAACAACACAGGGTCCTTAGAGATACTTGGAGGTAAAAAATGAGAAGCACGGGGTCCTT
131 AGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTGCAGGTGAAGAAGGAGCAGCACGGGGTCCTT
*
131484159 TTCAAGTAAATATTTCAT--G----C--GA-A-TTCAAGTAAAGAATTTTAAATCAAATTGATGG
196 TTCAAGTAAATATTTCATGCGATTTCATGAGATTTCAAGTAAAGACTTTTAAATCAAATTGATGG
* * * *
131484214 AATTAATAATTTAAAAGATATTCATAAATGGGAAAGTAAAAAAATTGTTTTGATAATGATACGCT
261 AATTAATAATTTAAAAGATATTAATAAATGAGAAAGTAAAAAAATTGTTTTGATAGTGATACGTT
* *
131484279 ATTTTATTATTATATGAAATGTATTAAGTTATTATTATTATTATTATTATTATGTAATCTTCGTT
326 ATTTTATTATTATGTGAAATGTATTAAG-------------T-TTATTATTATGTAATCTCCGTT
* *
131484344 GATTCCTTCGCACTGCAATCAAAGTCGGTGGAATCCTACGATATTAGACATCTCCAGCAATCTAT
377 GATTCCTTTGCACTGCAATCAAAGTCGGTGGAATCCTACGATATTAGACATCTCCAGCAATCTGT
* * *
131484409 GATCCCATGCCGTCCTGTTCATCTTCATCCTCCCCTTACAAACAAAAAAGGCCAAGCACACAATT
442 GATCCCATGCCGTACTGTTCATCTTCTTCCTCCCCTTACAAACAAAAAAGGCCAAACACACAATT
* * *
131484474 ATCATTAGGATTCAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGCAAATGAGCATTAAG
507 ATCACTAGGATTCAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGAAAAGGAGCATTAAG
* * ** **
131484539 GGCAAAAAGGAAGAAGGTACGTAGCATAAGTGAAGAAAAGTGAAGAAAAGAGCAGTAATTGTCTG
572 GAC-AAAAGGAAGAAGGTACGTAGCATAAGTGAAGAAAGGTGAAGAAGGGAGCAACAATTGTCTG
* **
131484604 CTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGGGATTTCTGAATTGTA
636 CTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTA
* * * *
131484669 TCATAGTCCACTGTGAAAATTATTTTTGGTGTGGAAATTATTATTGTTGTTGTTGTTGTTGTTGT
701 TCATAGTCCTCTGTG-AAATTATTTTTGGTGTGGAAATTATTA------------TTATTATTAT
* * * * *
131484734 TGTTATTATTATTATGTAATCTCCATTGATTCATTTGCATTGCAATCACAGTCAGTTATAATCTG
753 TATTATTATTATTATGTAATCTCCGTTGATTCCTTTGCACTGCAATCACAGTCAGTTACAATCTG
* * * *
131484799 ATATATGGTTTGTCAAGTGGTTAGTATTTGTTATCATGTGGTTAGTGTTTGTTATCACTCACTAG
818 GTATATGGTTAGTCAAGTGGTTAGCATTTGTTATCAAGTGGTTAGTGTTTGTTATCACTCACTAG
*
131484864 TGTATATAAGTATCATTTCTCTACAGGCTCACCAAAGCTAA
883 TGTATATAAGTATCATTTCTGTACAGGCTCACCAAAGCTAA
* * * * *
131484905 TTG-TACTAAGAATATTCAGCAAATGCTATTCTCTGTATTTCATTTATTATCGTTTCTTCATTAT
1 -TGATATTAAGAATATTCAGCAAATACTATTCTCTGTATTTCGTTCATTATCGTTTCTTCAATAT
* * * * * *
131484969 AGTTCTAACAAGGACCAAAAGGAAAGAAGGGAGTAGCAAAGGGTCCTTAGAGGTACTTGCAGGTG
65 ACTTCTAACAAGGACAAAAAAGAAAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTGCAGGTG
* * * * * * *
131485034 AAGAAGGTAACCACACAGGGTCCTTAGAGATACTTGCAGGTGAAGAAGAGACCAGCACTGGATCC
130 AAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTGCAGGTGAAGAAG-GAGCAGCACGGGGTCC
* * *
131485099 TTTTCAAGTAAATATTTCATGCGATTCCATGCGATTTCAAATAAAGACTTTTAAATCAAATTGAT
194 TTTTCAAGTAAATATTTCATGCGATTTCATGAGATTTCAAGTAAAGACTTTTAAATCAAATTGAT
* * *
131485164 AGAATTAATAATTTAAAAGATATTAATAAATAAGAAAGTAAAAAAATTGTTTTGATAATGATACG
259 GGAATTAATAATTTAAAAGATATTAATAAATGAGAAAGTAAAAAAATTGTTTTGATAGTGATACG
*
131485229 TTATTTTATTATTATGTGAAATGTATTAAG-TTATTATTATGTAATCTCTGTTGATTCCTTTGCA
324 TTATTTTATTATTATGTGAAATGTATTAAGTTTATTATTATGTAATCTCCGTTGATTCCTTTGCA
* * *
131485293 CTGCAATCAAAGTCTGTGGAATCCAACGATATTAGACACCTCCAGCAATCTGTGATCCCATGCCG
389 CTGCAATCAAAGTCGGTGGAATCCTACGATATTAGACATCTCCAGCAATCTGTGATCCCATGCCG
* * * *
131485358 TACTGTTCATCTTCTTCCTCCCTTTACAAACAAAAAATGCCAAACACAGAATTATCACTAGGGTT
454 TACTGTTCATCTTCTTCCTCCCCTTACAAACAAAAAAGGCCAAACACACAATTATCACTAGGATT
*
131485423 CAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGGAAAGGAGCATTAAGGACAAAAGGTAA
519 CAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAGG-AA
* * * * * *
131485488 GAAGGTACGTAGCATAGGTGAAGAAATGTGATGAAGGGAGCATCAATTGTCTACTCAACAAGGTC
583 GAAGGTACGTAGCATAAGTGAAGAAAGGTGAAGAAGGGAGCAACAATTGTCTGCTCAACAGGGTC
* * * * *
131485553 CTTAGAAATATTTGCCTTTTCAAGTAAATATTTCATTCGATTTCCAAATTGTATCATAATCCTCC
648 CTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGTCCTCT
*
131485618 GTGAAATCTATTTTTGGTGTGGAAATTATTATTATTATTATTATTATTATTATTATGTAATCTCT
713 GTGAAAT-TATTTTTGGTGTGGAAATTATTATTATTATTATTATTATTATTATTATGTAATCTCC
* *
131485683 GTTGATTCATTTGCACTGCAATCACAGTCAGTTATAATCTGGTATATGGTTAGTCAAGTGGTTAG
777 GTTGATTCCTTTGCACTGCAATCACAGTCAGTTACAATCTGGTATATGGTTAGTCAAGTGGTTAG
* * * *
131485748 CATTTGTTATCAAATGGTTACTGTTTGTTATCACTCACTAGTGTATATAACTATCATTTCCGTAC
842 CATTTGTTATCAAGTGGTTAGTGTTTGTTATCACTCACTAGTGTATATAAGTATCATTTCTGTAC
*
131485813 AGGTTCACCAAAGCTAA
907 AGGCTCACCAAAGCTAA
* *
131485830 TGATATTAAGAATATTTAGTAAATACTATTCTCTGTATTTCGTTCATTATCGTTTCTTCAATATA
1 TGATATTAAGAATATTCAGCAAATACTATTCTCTGTATTTCGTTCATTATCGTTTCTTCAATATA
* * * *
131485895 CTTCTAACAAGGGCAAAAAAGAAAGAAGGAAGCAACACAGGGTCCTTAGAGATACTTGCAAGTGA
66 CTTCTAACAAGGACAAAAAAGAAAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTGCAGGTGA
* *
131485960 AGAAGGGAGCAACAAAGGGTCCTTAGACATACTTGCAGGTGAAGATAGGAGCAGCACGGGGTCTT
131 AGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTGCAGGTGAAGA-AGGAGCAGCACGGGGTCCT
* *
131486025 TTTCAAGTAAATATTTCATGCAATTTAATGAGATTTCAAGTAAAGACTTTTAAATCAAATTGATG
195 TTTCAAGTAAATATTTCATGCGATTTCATGAGATTTCAAGTAAAGACTTTTAAATCAAATTGATG
* * ** *
131486090 GAATTAATAATTTAAAAGATATTGATAAACGAGAAAGTAAAAAAATTGTTTCCATAGTGATACGC
260 GAATTAATAATTTAAAAGATATTAATAAATGAGAAAGTAAAAAAATTGTTTTGATAGTGATACGT
131486155 TATTTTATTATTATGTGAAATGTATTAAGTTATTATTATTCTTATGTAATCTCCGTTGATTCCTT
325 TATTTTATTATTATGTGAAATGTATTAAG-T-TTATTA---TTATGTAATCTCCGTTGATTCCTT
* ** * * *
131486220 TGCACTGCAATCAAATTCGGTTTAATCCTACGATATTAGACACCTCTAGTAATCTGTGATCCCAT
385 TGCACTGCAATCAAAGTCGGTGGAATCCTACGATATTAGACATCTCCAGCAATCTGTGATCCCAT
* *
131486285 GCCGTACTGTTCATCTTCTTGCTCCCCTTACAAATAAAAAAGGCCAAACACACAATTATCACTAG
450 GCCGTACTGTTCATCTTCTTCCTCCCCTTACAAACAAAAAAGGCCAAACACACAATTATCACTAG
* *
131486350 GATTCAAAATCTCTAATATCTGATTTAAAATGAAAAAGAATGAAAAGGATCATTAAGGACAAAAA
515 GATTCAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGAAAAGGAGCATTAAGGAC-AAAA
* * * * * *
131486415 GGAAAAAGGTACGTAACGTAGGTGAAGAAAGGTGAAGAAGGGAGCAACAATTTTCTGCTCAATAG
579 GGAAGAAGGTACGTAGCATAAGTGAAGAAAGGTGAAGAAGGGAGCAACAATTGTCTGCTCAACAG
*
131486480 GGTCCATAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGTC
644 GGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGTC
*
131486545 CACTGTCGAAATTATTTTTGGTGTGG-AA--ATTATTATTATTA-T-TT-TTATTATTATGTAAT
709 CTCTGT-GAAATTATTTTTGGTGTGGAAATTATTATTATTATTATTATTATTATTATTATGTAAT
* * * *
131486604 CTCCGTTGATTCCTTTACACTGCAATCACAGTCAGTTACAATCTAGTATATTGTTAGTCTAGTGG
773 CTCCGTTGATTCCTTTGCACTGCAATCACAGTCAGTTACAATCTGGTATATGGTTAGTCAAGTGG
*
131486669 TTAGTATTTGTTATCAAGTGGTTAGTGTTTGTTATCACT--CTAGTGTATATAAGTATCATTTCT
838 TTAGCATTTGTTATCAAGTGGTTAGTGTTTGTTATCACTCACTAGTGTATATAAGTATCATTTCT
131486732 GTACAGGCTCACCAAAGCTAA
903 GTACAGGCTCACCAAAGCTAA
* *
131486753 TGATATTAAGAATATTCAGCAAATACTATTCTCTGTATTTCTTTCATTATCGTTTCTTCATTATA
1 TGATATTAAGAATATTCAGCAAATACTATTCTCTGTATTTCGTTCATTATCGTTTCTTCAATATA
* * * * *
131486818 GTTCTAACAAGGACGAAAAGGAAAGAAGGGAGCATCAAAGGGTCCTTAGAGGTACTTGCAGGTGA
66 CTTCTAACAAGGACAAAAAAGAAAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTGCAGGTGA
* *
131486883 AGAAGGGAACAGAACAAA--GTCCTTAGAGATACTTGGAGGTGAA-AAGAGAGCAGCACGGGGTC
131 AGAAGGGAGC--AACAAAGGGTCCTTAGAGATACTTGCAGGTGAAGAAG-GAGCAGCACGGGGTC
* *
131486945 CTTTTCAGGTAAATATTTCATGCGATTTCATGCGATTTCAAGTAAAGACTTTTAAATCAAATTGA
193 CTTTTCAAGTAAATATTTCATGCGATTTCATGAGATTTCAAGTAAAGACTTTTAAATCAAATTGA
* * *
131487010 TGGAATTAATAATTTAAAAGATATTAATAAATGGGAAAGT-----AATTTTTTTTATAGTGATAC
258 TGGAATTAATAATTTAAAAGATATTAATAAATGAGAAAGTAAAAAAATTGTTTTGATAGTGATAC
* *
131487070 GTTATTTTATTTTTATGTGAAATGTATTAAGTTATTATTATTATTATTATTATGTAATCTCCATT
323 GTTATTTTATTATTATGTGAAATGTATTAAG----------T-TTATTATTATGTAATCTCCGTT
* * * * *
131487135 TATTCCTTTGCACTGCAATCAAGGTCAGTTGAATCCTACAATATTAGACATCTCCAGCAATCTGT
377 GATTCCTTTGCACTGCAATCAAAGTCGGTGGAATCCTACGATATTAGACATCTCCAGCAATCTGT
131487200 GATCCCATGCCGTACTGTTCATCTTCTTCCTCCCCTTACAAACAAAAAAGGCCAAACACACAATT
442 GATCCCATGCCGTACTGTTCATCTTCTTCCTCCCCTTACAAACAAAAAAGGCCAAACACACAATT
* *
131487265 ATCACTAGGATTCAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGCAAATGAGCATTAAG
507 ATCACTAGGATTCAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGAAAAGGAGCATTAAG
* * * * *
131487330 GACAAAAAGGAAGAAGGTATGTAGCATAAGTGAAGAAAAGTGAAGAAAGGAGCAGCAATTGTTTG
572 GAC-AAAAGGAAGAAGGTACGTAGCATAAGTGAAGAAAGGTGAAGAAGGGAGCAACAATTGTCTG
* * **
131487395 CTCAACGGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGGGATTTCTGAATTGTA
636 CTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTA
*
131487460 TCATAGTCCACTGTGGAAATTATTTTTGGTGTGGAAATTATTATTATTATTATTATTATTATTAT
701 TCATAGTCCTCTGT-GAAATTATTTTTGGTGTGGAAATTATTATTATTATTATTATTATTATTAT
* * ** * *** **** * ** * * * *
131487525 TATTGT--TGT-TGTTG-TTGTTGTTG--TTGTTGTTGTTGT-TGTT--GTTGTTGT-TGTTGTT
765 TA-TGTAATCTCCGTTGATTCCT-TTGCACTGCAATCACAGTCAGTTACAATCTGGTATATGGTT
* * * * * * * * * *
131487580 -GT--TGTTGTT-G-TTGTTGTTATGTAATCTCCGTTGATTCATTTG-CACTGCAATCAC-AGTC
828 AGTCAAGTGGTTAGCAT-TTGTTAT-CAA-GT-GGTT-AGT-GTTTGTTA-T-CACTCACTAGT-
* * * *** *
131487638 AGT-TATAATTTGATTTATGGTT-TGT-CAAG-T-A-GTTAG-TATT
884 -GTATATAA-GT-A-TCAT--TTCTGTACAGGCTCACCAAAGCTA-A
* ** ** ** ** * **
131487678 TGTTATCATGTGGTTAGTGTTTG-TTATCACTCA--CTAGTGTATATAAGTATCATTTCTATACA
1 TGATAT--TAAGAATA-T-TCAGCAAAT-ACT-ATTCT-CTGTAT-TTCGT-TCA--T-TAT-C-
** ** * * *** * * ****
131487740 GGCTCACCAA-AGCTAATTAT-ACTAA-GA-ATATTCAGCAAATACGATTCTCTATATTTTGTTC
52 GTTTCTTCAATA--TACTTCTAAC-AAGGACA-AAAAAG-AAAGAAG-GGAGC-A-A-------C
** * * * * **
131487801 ATTATCGTTTCTTCAGTATAGTTCTAACAAGGACGAAAATGAAAGAAGGGAGCAACACAGGGTCC
102 A--AAGGGTCCTT-AG-AGA-TACTTGC-A-G--G----TG-AAGAA-GG-G------A--G--C
131487866 TTAGAGATGCTTTCAGGTGAATAAGGGAATAGCACAAGGTCCTTAGAGATACTTGCAGGTGAAGA
141 ----A-A------C-------------AA-AG-----GGTCCTTAGAGATACTTGCAGGTGAAGA
* * *
131487931 AGGGAGCAGCGCAGGGTCCTTTTCAAGTAAATATTTCATGTGATTTCATGCA-ATTTCAAGTAAA
176 A-GGAGCAGCACGGGGTCCTTTTCAAGTAAATATTTCATGCGATTTCATG-AGATTTCAAGTAAA
* * *
131487995 GCCTTTTAAATCAAATTGATGGAATTAACAATATAAAAGATATTAATAAATGAGAAAGTAAAAAA
239 GACTTTTAAATCAAATTGATGGAATTAATAATTTAAAAGATATTAATAAATGAGAAAGT---AAA
*
131488060 AAAATTGTTTTGTTAGTGATACGTTATTTTATTATTATGTGAAATGTATTAAGTTATTATTATTA
301 AAAATTGTTTTGATAGTGATACGTTATTTTATTATTATGTGAAATGTATTAAG-T-TTATTATTA
* ** * * * *
131488125 TATAATCTTTGTTGATTCCTTTGCATTGCAAACAATGTCGGTGGAATCCTACGATATTAGACACC
364 TGTAATCTCCGTTGATTCCTTTGCACTGCAATCAAAGTCGGTGGAATCCTACGATATTAGACATC
* * * *
131488190 TCCAGCCATTTGTGATCCCGTGCCGTACTGTTCATCTTCTTCCTCCCCTTTCAAACAAAAAAGGC
429 TCCAGCAATCTGTGATCCCATGCCGTACTGTTCATCTTCTTCCTCCCCTTACAAACAAAAAAGGC
* *
131488255 TAAACACACAATTATCACTAGGACTT-AAAATCTCTAATATCTGATATCAAATGAAAAAGAATGA
494 CAAACACACAATTATCACTAGGA-TTCAAAATCTCTAATATCTGATATAAAATGAAAAAGAATGA
* *
131488319 AAATGAGCATTAAGGACAAAAGGAAGAAGGTACGTAGCATAAGTGAAGAAAGGTGATGAAGGGAG
558 AAAGGAGCATTAAGGACAAAAGGAAGAAGGTACGTAGCATAAGTGAAGAAAGGTGAAGAAGGGAG
* * *
131488384 CAACAATTATCTGCTCAACAGGGTCCTTAGAAATATTTGCCTTTTCAAGTAAATATTTCATGCGA
623 CAACAATTGTCTGCTCAACAGGGTCCTTAGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGA
*
131488449 TTTCCAAATTGTATCATAGTCCTTTGTGAAAATTATTTTTGGTGTGGAAATTATTATTATTATTA
688 TTTCCAAATTGTATCATAGTCCTCTGTG-AAATTATTTTTGGTGTGG------------------
* *
131488514 TTATTATTATTATTATTATTATTATTATTATTATTATTATAATATAATCTTCGTTGATTCCTTTG
734 --A--A--ATTATTATTATTATTATTATTATTATTA-T-T-ATGTAATCTCCGTTGATTCCTTTG
* * *
131488579 AACTGTAATCACAGTTAGTTACAATCTGGTATATGGTTAGTCAAGTGGTTAGCATTTGTTATCAA
790 CACTGCAATCACAGTCAGTTACAATCTGGTATATGGTTAGTCAAGTGGTTAGCATTTGTTATCAA
* * * *
131488644 GTGGTTAGTGTTTGTTATCACTCACTAGTGTATATAACTATCATTTCTGGACAGGTTCACTAAAG
855 GTGGTTAGTGTTTGTTATCACTCACTAGTGTATATAAGTATCATTTCTGTACAGGCTCACCAAAG
131488709 CTAA
920 CTAA
* * *
131488713 TGATATTAAGAATATTCAGCAAATACTATTCTCTGTATTTCGTTCATTATCATTTCTTTAACATA
1 TGATATTAAGAATATTCAGCAAATACTATTCTCTGTATTTCGTTCATTATCGTTTCTTCAATATA
* * * *
131488778 CTTCTAACAATGG-CGAAAAAGAAAGAAGGGAGCAACACATGGTCCTTAGAGATACTTGCTGGTG
66 CTTCTAACAA-GGACAAAAAAGAAAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTGCAGGTG
* * ****
131488842 AAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTACAGGTGAAGAACGGGGCAGCATAATGTCC
130 AAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTGCAGGTGAAGAA-GGAGCAGCACGGGGTCC
*
131488907 TTTTCAAGTAAATATTTCATGCGATTTTATGAGATTTCAAGTAAAGACTTTTAAATCAAATTGAT
194 TTTTCAAGTAAATATTTCATGCGATTTCATGAGATTTCAAGTAAAGACTTTTAAATCAAATTGAT
* **
131488972 GGAATTAATAATTTAAAAGATATTAATAAATGTGAAAGTAAAAAAATTGTTTCCATAGTGATACG
259 GGAATTAATAATTTAAAAGATATTAATAAATGAGAAAGTAAAAAAATTGTTTTGATAGTGATACG
* *
131489037 CTATTTTATTATTATGTGAAATGTATTAAGTTATTATTATTCTTATGTAATCTCCATTGATTCCT
324 TTATTTTATTATTATGTGAAATGTATTAAG-T-TTATTA---TTATGTAATCTCCGTTGATTCCT
* * * *
131489102 TTGCACTGCAATCAAATTCGGTTGAATCCTACGATATTAGACATCTTCAGCAATTTGTGATCCCA
384 TTGCACTGCAATCAAAGTCGGTGGAATCCTACGATATTAGACATCTCCAGCAATCTGTGATCCCA
*
131489167 TGTCGTACTGTTCATCTTCTTCCTCCCCTTACAAACAAAAAAGGCCAAACACACAATTATCACTA
449 TGCCGTACTGTTCATCTTCTTCCTCCCCTTACAAACAAAAAAGGCCAAACACACAATTATCACTA
* * **
131489232 GGATTCAAAACCTCTAATATCTGATTTAAAATGAAAAAAGAATGAAAATAAGCATTAAGGACAAA
514 GGATTCAAAATCTCTAATATCTGATATAAAATG-AAAAAGAATGAAAAGGAGCATTAAGGACAAA
131489297 A
578 A
131489298 AGGAGAAATG
Statistics
Matches: 5243, Mismatches: 676, Indels: 639
0.80 0.10 0.10
Matches are distributed among these distances:
899 2 0.00
900 2 0.00
901 1 0.00
903 8 0.00
904 15 0.00
905 9 0.00
906 15 0.00
907 3 0.00
908 7 0.00
909 5 0.00
910 209 0.04
911 3 0.00
912 8 0.00
913 3 0.00
916 1 0.00
917 54 0.01
918 48 0.01
919 138 0.03
920 153 0.03
921 12 0.00
922 122 0.02
923 539 0.10
924 12 0.00
925 606 0.12
926 33 0.01
927 16 0.00
928 219 0.04
929 171 0.03
930 10 0.00
931 453 0.09
932 11 0.00
933 3 0.00
934 6 0.00
935 100 0.02
936 29 0.01
937 363 0.07
938 57 0.01
939 1 0.00
940 1 0.00
941 187 0.04
942 34 0.01
943 3 0.00
944 9 0.00
945 1 0.00
946 15 0.00
947 134 0.03
948 8 0.00
949 11 0.00
950 39 0.01
951 14 0.00
952 138 0.03
953 9 0.00
954 67 0.01
955 1 0.00
956 4 0.00
957 306 0.06
958 31 0.01
959 5 0.00
960 2 0.00
961 5 0.00
962 4 0.00
963 3 0.00
969 1 0.00
973 1 0.00
975 3 0.00
976 2 0.00
982 2 0.00
983 1 0.00
987 1 0.00
989 1 0.00
991 1 0.00
995 2 0.00
996 1 0.00
997 1 0.00
998 2 0.00
999 5 0.00
1000 2 0.00
1001 1 0.00
1002 143 0.03
1003 225 0.04
1004 115 0.02
1005 1 0.00
1006 1 0.00
1008 4 0.00
1009 2 0.00
1010 2 0.00
1011 5 0.00
1012 47 0.01
1013 2 0.00
1020 1 0.00
1021 1 0.00
1022 2 0.00
1023 12 0.00
1024 10 0.00
1025 3 0.00
1026 31 0.01
1027 2 0.00
1028 3 0.00
1029 4 0.00
1030 8 0.00
1031 19 0.00
1032 14 0.00
1033 12 0.00
1034 7 0.00
1035 18 0.00
1036 14 0.00
1037 8 0.00
1038 5 0.00
1039 1 0.00
1040 7 0.00
1041 8 0.00
1042 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (923 bp):
TGATATTAAGAATATTCAGCAAATACTATTCTCTGTATTTCGTTCATTATCGTTTCTTCAATATA
CTTCTAACAAGGACAAAAAAGAAAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTGCAGGTGA
AGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTGCAGGTGAAGAAGGAGCAGCACGGGGTCCTT
TTCAAGTAAATATTTCATGCGATTTCATGAGATTTCAAGTAAAGACTTTTAAATCAAATTGATGG
AATTAATAATTTAAAAGATATTAATAAATGAGAAAGTAAAAAAATTGTTTTGATAGTGATACGTT
ATTTTATTATTATGTGAAATGTATTAAGTTTATTATTATGTAATCTCCGTTGATTCCTTTGCACT
GCAATCAAAGTCGGTGGAATCCTACGATATTAGACATCTCCAGCAATCTGTGATCCCATGCCGTA
CTGTTCATCTTCTTCCTCCCCTTACAAACAAAAAAGGCCAAACACACAATTATCACTAGGATTCA
AAATCTCTAATATCTGATATAAAATGAAAAAGAATGAAAAGGAGCATTAAGGACAAAAGGAAGAA
GGTACGTAGCATAAGTGAAGAAAGGTGAAGAAGGGAGCAACAATTGTCTGCTCAACAGGGTCCTT
AGAGATACTTGCCTTTTCAAGTAAATATTTCATGCGATTTCCAAATTGTATCATAGTCCTCTGTG
AAATTATTTTTGGTGTGGAAATTATTATTATTATTATTATTATTATTATTATGTAATCTCCGTTG
ATTCCTTTGCACTGCAATCACAGTCAGTTACAATCTGGTATATGGTTAGTCAAGTGGTTAGCATT
TGTTATCAAGTGGTTAGTGTTTGTTATCACTCACTAGTGTATATAAGTATCATTTCTGTACAGGC
TCACCAAAGCTAA
Found at i:131486688 original size:21 final size:21
Alignment explanation
Indices: 131486647--131486705 Score: 82
Period size: 21 Copynumber: 2.7 Consensus size: 21
131486637 AGTTACAATC
*
131486647 TAGTATATTGTTAGTCTAGTGGT
1 TAGTAT-TTGTTA-TCAAGTGGT
131486670 TAGTATTTGTTATCAAGTGGT
1 TAGTATTTGTTATCAAGTGGT
*
131486691 TAGTGTTTGTTATCA
1 TAGTATTTGTTATCA
131486706 CTCTAGTGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 22 0.65
22 6 0.18
23 6 0.18
ACGTcount: A:0.22, C:0.05, G:0.24, T:0.49
Consensus pattern (21 bp):
TAGTATTTGTTATCAAGTGGT
Found at i:131486974 original size:10 final size:10
Alignment explanation
Indices: 131486959--131486984 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
131486949 TCAGGTAAAT
131486959 ATTTCATGCG
1 ATTTCATGCG
131486969 ATTTCATGCG
1 ATTTCATGCG
131486979 ATTTCA
1 ATTTCA
131486985 AGTAAAGACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.19, G:0.15, T:0.42
Consensus pattern (10 bp):
ATTTCATGCG
Found at i:131487504 original size:3 final size:3
Alignment explanation
Indices: 131487496--131487528 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
131487486 TGGTGTGGAA
131487496 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
131487529 GTTGTTGTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:131487533 original size:3 final size:3
Alignment explanation
Indices: 131487527--131487597 Score: 142
Period size: 3 Copynumber: 23.7 Consensus size: 3
131487517 ATTATTATTA
131487527 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
131487575 TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TT
131487598 ATGTAATCTC
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:131487949 original size:42 final size:42
Alignment explanation
Indices: 131487843--131487951 Score: 146
Period size: 42 Copynumber: 2.6 Consensus size: 42
131487833 ACGAAAATGA
* * *
131487843 AAGAAGGGAGCAACACAGGGTCCTTAGAGATGCTTTCAGGTG
1 AAGAAGGGAGCAGCACAGGGTCCTTAGAGATACTTGCAGGTG
* ** *
131487885 AATAAGGGAATAGCACAAGGTCCTTAGAGATACTTGCAGGTG
1 AAGAAGGGAGCAGCACAGGGTCCTTAGAGATACTTGCAGGTG
*
131487927 AAGAAGGGAGCAGCGCAGGGTCCTT
1 AAGAAGGGAGCAGCACAGGGTCCTT
131487952 TTCAAGTAAA
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.32, C:0.17, G:0.33, T:0.18
Consensus pattern (42 bp):
AAGAAGGGAGCAGCACAGGGTCCTTAGAGATACTTGCAGGTG
Found at i:131488506 original size:3 final size:3
Alignment explanation
Indices: 131488498--131488553 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
131488488 TGGTGTGGAA
131488498 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
131488546 ATT ATT AT
1 ATT ATT AT
131488554 AATATAATCT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:131488643 original size:21 final size:21
Alignment explanation
Indices: 131488614--131488663 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
131488604 CTGGTATATG
131488614 GTTAGTCAAGTGGTTAGCATTT
1 GTTA-TCAAGTGGTTAGCATTT
**
131488636 GTTATCAAGTGGTTAGTGTTT
1 GTTATCAAGTGGTTAGCATTT
131488657 GTTATCA
1 GTTATCA
131488664 CTCACTAGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.22, C:0.08, G:0.26, T:0.44
Consensus pattern (21 bp):
GTTATCAAGTGGTTAGCATTT
Found at i:131488908 original size:42 final size:42
Alignment explanation
Indices: 131488800--131488888 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
131488790 GCGAAAAAGA
* * * *
131488800 AAGAAGGGAGCAACACATGGTCCTTAGAGATACTTGCTGGTG
1 AAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTACAGGTG
131488842 AAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTACAGGTG
1 AAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTACAGGTG
131488884 AAGAA
1 AAGAA
131488889 CGGGGCAGCA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.37, C:0.15, G:0.30, T:0.18
Consensus pattern (42 bp):
AAGAAGGGAGCAACAAAGGGTCCTTAGAGATACTTACAGGTG
Found at i:131490065 original size:26 final size:26
Alignment explanation
Indices: 131490036--131490091 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
131490026 TGATACAAAT
131490036 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
131490062 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
131490088 TGAT
1 TGAT
131490092 GGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:131490994 original size:31 final size:31
Alignment explanation
Indices: 131490952--131491020 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
131490942 TAACGGCACT
*
131490952 TGATTTGGAGTTTCGTAGCTCCAGTTATAAA
1 TGATTTAGAGTTTCGTAGCTCCAGTTATAAA
131490983 TGATTTAGAGTTTCGTAGCTCCAGTTATAAA
1 TGATTTAGAGTTTCGTAGCTCCAGTTATAAA
131491014 TGATTTA
1 TGATTTA
131491021 ATGACTGTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.41
Consensus pattern (31 bp):
TGATTTAGAGTTTCGTAGCTCCAGTTATAAA
Found at i:131493802 original size:17 final size:17
Alignment explanation
Indices: 131493747--131493802 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
131493737 TAAATTTAAA
131493747 ATATAATATATAATAAAA-
1 ATATAAT-TAT-ATAAAAT
131493765 ATAT-ATT-TATAAGAAT
1 ATATAATTATATAA-AAT
131493781 A-ATAATTATATAAAAT
1 ATATAATTATATAAAAT
131493797 ATATAA
1 ATATAA
131493803 AATATATTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
14 4 0.12
15 5 0.15
16 9 0.27
17 11 0.33
18 4 0.12
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (17 bp):
ATATAATTATATAAAAT
Found at i:131494308 original size:19 final size:19
Alignment explanation
Indices: 131494284--131494374 Score: 134
Period size: 19 Copynumber: 4.9 Consensus size: 19
131494274 AATCATATCT
*
131494284 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
131494303 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
131494321 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
131494338 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
*
131494357 TCTAAGATTGAATATCAT
1 TCTAAGATTGCATATCAT
131494375 TGAAGATTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 33 0.51
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:131494342 original size:35 final size:37
Alignment explanation
Indices: 131494284--131494374 Score: 141
Period size: 35 Copynumber: 2.5 Consensus size: 37
131494274 AATCATATCT
*
131494284 TCTAAGATTGTATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCACA
131494321 TCTAAGATTG-TATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGATATCATATCTAAGATTGCATATCACA
131494357 TCTAAGATTGAATATCAT
1 TCTAAGATTG-ATATCAT
131494375 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.38
36 15 0.30
37 10 0.20
38 6 0.12
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCACA
Found at i:131494353 original size:14 final size:15
Alignment explanation
Indices: 131494298--131494353 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
131494288 AGATTGTATA
131494298 TCATATCTAAGATTG
1 TCATATCTAAGATTG
131494313 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
131494331 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
131494348 -CATATC
1 TCATATC
131494354 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:131495344 original size:205 final size:205
Alignment explanation
Indices: 131494737--131495444 Score: 1220
Period size: 205 Copynumber: 3.5 Consensus size: 205
131494727 AAATTAACTT
* * * * * **
131494737 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAATAC
* *
131494802 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
* * *
131494867 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCCATGTATCTACTCTCCATTGAAGTGG
131 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTACTCTCTATTGAAGTAG
131494932 AGATGCCAGA
196 AGATGCCAGA
*
131494942 CTTCGATTTGTTCTCTGACACTACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAATAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAATAC
131495007 GTGAAAGCCAAATCAGCTATGTCTT-GATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
*
131495071 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTACTCTCTATTGAATTAG
131 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTACTCTCTATTGAAGTAG
131495136 AGATGCCAGA
196 AGATGCCAGA
* *
131495146 CTTCGATTTGTTCTCTGACACTACAGAGACGACAAATCATCTTAGATTTGCTTCACCGTAAATAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAATAC
*
131495211 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATATCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
*
131495276 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTATTGAAGTAG
131 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTACTCTCTATTGAAGTAG
131495341 AGATGCCAGA
196 AGATGCCAGA
* * *
131495351 CTTCGATTTGTTCTCTAACAATACAGGGACGACAAATCATCTTAGATTTGCTTTATCGTAAATAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAATAC
131495416 GTGAAAGCCAAATCAGCTATGTCTTCGAT
66 GTGAAAGCCAAATCAGCTATGTCTTCGAT
131495445 CTGCTCTCCG
Statistics
Matches: 479, Mismatches: 23, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
204 197 0.41
205 282 0.59
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAATAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTACTCTCTATTGAAGTAG
AGATGCCAGA
Found at i:131495493 original size:44 final size:44
Alignment explanation
Indices: 131495437--131495521 Score: 134
Period size: 44 Copynumber: 1.9 Consensus size: 44
131495427 ATCAGCTATG
*
131495437 TCTTCGATCTGCTCTCCGCCAATACAGAGATGCCAAATCTGGTA
1 TCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTGGTA
* * *
131495481 TCTTCGATCTGCTCTCTGACAATACAGAGATGTCGAATCTG
1 TCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTG
131495522 CTGTTTTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTGGTA
Found at i:131502547 original size:37 final size:36
Alignment explanation
Indices: 131502487--131502586 Score: 98
Period size: 37 Copynumber: 2.8 Consensus size: 36
131502477 TAATAAATTT
*
131502487 AAAATATAATATAT--AATAAAAAATATATT-TATAAG
1 AAAA-ATAATATATAAAATATAAAATATATTGT-TAAG
* *
131502522 AATAATAATTATATAAAATATAAAATATATTGGTTTAG
1 AAAAATAA-TATATAAAATATAAAATATATT-GTTAAG
* *
131502560 AAAAATAATGTATAAAATATCAAATAT
1 AAAAATAATATATAAAATATAAAATAT
131502587 GTAAAAGAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
34 4 0.07
35 8 0.15
37 31 0.57
38 10 0.19
39 1 0.02
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (36 bp):
AAAAATAATATATAAAATATAAAATATATTGTTAAG
Found at i:131503080 original size:17 final size:18
Alignment explanation
Indices: 131503027--131503152 Score: 157
Period size: 19 Copynumber: 6.9 Consensus size: 18
131503017 AATCATATCT
*
131503027 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
131503046 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
131503064 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
* *
131503081 TCTAAGATTGCAATAATA
1 TCTAAGATTGCTATCATA
131503099 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
131503116 TCTAAGATTGCATATCACA
1 TCTAAGATTGC-TATCATA
*
131503135 TATAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
131503153 TGAAGATTAT
Statistics
Matches: 94, Mismatches: 10, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
17 31 0.33
18 31 0.33
19 32 0.34
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:131503085 original size:35 final size:35
Alignment explanation
Indices: 131503027--131503144 Score: 182
Period size: 35 Copynumber: 3.3 Consensus size: 35
131503017 AATCATATCT
131503027 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
*
131503064 TCTAAGATTGTATCATATCTAAGATTGCAATAATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
131503099 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
*
131503135 TATAAGATTG
1 TCTAAGATTG
131503145 CATATCATTG
Statistics
Matches: 76, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
35 53 0.70
36 13 0.17
37 10 0.13
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:131503160 original size:17 final size:18
Alignment explanation
Indices: 131503029--131503149 Score: 57
Period size: 17 Copynumber: 6.7 Consensus size: 18
131503019 TCATATCTTC
*
131503029 TAAGATTGTATAT-CATA
1 TAAGATTGCATATACATA
131503046 TCTAAGATTGCA-AT-CATA
1 --TAAGATTGCATATACATA
131503064 TCTAAGATTG--TAT-CATA
1 --TAAGATTGCATATACATA
131503081 TCTAAGATTGCA-ATA-ATA
1 --TAAGATTGCATATACATA
131503099 TCTAAGATTG--TAT-CATA
1 --TAAGATTGCATATACATA
131503116 TCTAAGATTGCATATCACATA
1 --TAAGATTGCATAT-ACATA
131503137 TAAGATTGCATAT
1 TAAGATTGCATAT
131503150 CATTGAAGAT
Statistics
Matches: 91, Mismatches: 1, Indels: 20
0.81 0.01 0.18
Matches are distributed among these distances:
17 31 0.34
18 31 0.34
19 25 0.27
21 4 0.04
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (18 bp):
TAAGATTGCATATACATA
Found at i:131503658 original size:42 final size:42
Alignment explanation
Indices: 131503553--131503661 Score: 146
Period size: 42 Copynumber: 2.6 Consensus size: 42
131503543 ACGAAAATGA
* *
131503553 AAGAAGGGAGCAGCAAAGGGTCCTTAGAGGTACTTGCAGGTG
1 AAGAAGGGAGCAGCACAGGGTCCTTAGAGATACTTGCAGGTG
* * * *
131503595 AAGAAGGGAACAACACAGGGTCTTTAGAGATCCTTGCAGGTG
1 AAGAAGGGAGCAGCACAGGGTCCTTAGAGATACTTGCAGGTG
* *
131503637 AAGAAGGGAGCAGTACGGGGTCCTT
1 AAGAAGGGAGCAGCACAGGGTCCTT
131503662 TTCAAGTAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.31, C:0.16, G:0.36, T:0.17
Consensus pattern (42 bp):
AAGAAGGGAGCAGCACAGGGTCCTTAGAGATACTTGCAGGTG
Found at i:131504324 original size:21 final size:21
Alignment explanation
Indices: 131504300--131504340 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
131504290 ATGGTTAGTC
*
131504300 AAGTGCTTAGTATTTGTTATT
1 AAGTGCTTAATATTTGTTATT
* *
131504321 AAGTGGTTAATGTTTGTTAT
1 AAGTGCTTAATATTTGTTAT
131504341 CACTCACTAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.02, G:0.22, T:0.51
Consensus pattern (21 bp):
AAGTGCTTAATATTTGTTATT
Found at i:131504543 original size:42 final size:42
Alignment explanation
Indices: 131504479--131504578 Score: 146
Period size: 42 Copynumber: 2.4 Consensus size: 42
131504469 ACAAAAAGGA
* * *
131504479 AAGAAGGGAGCAGCATAGGGTCCTTAGAGATACTTGCAGGTG
1 AAGAAGGGAACAGCACAAGGTCCTTAGAGATACTTGCAGGTG
*
131504521 AAGAAGGGAATAGCACAAGGTCCTTAGAGATACTTGCAGGTG
1 AAGAAGGGAACAGCACAAGGTCCTTAGAGATACTTGCAGGTG
* *
131504563 AAAAAGGGAGCAGCAC
1 AAGAAGGGAACAGCAC
131504579 GGGGTTCTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.36, C:0.15, G:0.33, T:0.16
Consensus pattern (42 bp):
AAGAAGGGAACAGCACAAGGTCCTTAGAGATACTTGCAGGTG
Found at i:131504614 original size:10 final size:10
Alignment explanation
Indices: 131504599--131504624 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
131504589 TCAAGTAAAT
131504599 ATTTCATGCG
1 ATTTCATGCG
131504609 ATTTCATGCG
1 ATTTCATGCG
131504619 ATTTCA
1 ATTTCA
131504625 AGTAAAGACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.19, G:0.15, T:0.42
Consensus pattern (10 bp):
ATTTCATGCG
Found at i:131505788 original size:25 final size:26
Alignment explanation
Indices: 131505739--131505844 Score: 175
Period size: 25 Copynumber: 4.2 Consensus size: 26
131505729 TGATACAAAT
131505739 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
131505764 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
131505789 TGATAAT-GGTTAGGTAAA-GTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
131505813 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
131505839 TGATAA
1 TGATAA
131505845 GAATTTCATG
Statistics
Matches: 78, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
24 26 0.33
25 40 0.51
26 12 0.15
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:131507357 original size:26 final size:26
Alignment explanation
Indices: 131507328--131507380 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
131507318 TTTACAGTTT
131507328 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
131507354 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
131507380 T
1 T
131507381 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:131511617 original size:26 final size:24
Alignment explanation
Indices: 131511525--131511630 Score: 176
Period size: 24 Copynumber: 4.2 Consensus size: 24
131511515 TGATACAAAT
131511525 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAAT-GGTTAGGTAAATGTTCA
131511550 TGATAATGGTTAGGTAAATGTTCA
1 TGATAATGGTTAGGTAAATGTTCA
131511574 TGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATG-TTCA
131511599 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATG-TTCA
131511625 TGATAA
1 TGATAA
131511631 GAATTTCATG
Statistics
Matches: 79, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
24 37 0.47
25 18 0.23
26 24 0.30
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.38
Consensus pattern (24 bp):
TGATAATGGTTAGGTAAATGTTCA
Found at i:131515840 original size:18 final size:19
Alignment explanation
Indices: 131515817--131515855 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
131515807 TATACCCTCT
131515817 TTACTAATAG-TTTTTTAA
1 TTACTAATAGTTTTTTTAA
131515835 TTACTAATAGTTTTTTTAA
1 TTACTAATAGTTTTTTTAA
131515854 TT
1 TT
131515856 TTAAAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (19 bp):
TTACTAATAGTTTTTTTAA
Found at i:131517792 original size:26 final size:26
Alignment explanation
Indices: 131517752--131517807 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
131517742 ATATAATAAT
131517752 AATATAATAAATAATACA-AATTTAAA
1 AATATAATAAATAATA-ATAATTTAAA
** *
131517778 AATATAATACTTAATAATAATTTCAA
1 AATATAATAAATAATAATAATTTAAA
131517804 AATA
1 AATA
131517808 GCATTTACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (26 bp):
AATATAATAAATAATAATAATTTAAA
Found at i:131519382 original size:21 final size:21
Alignment explanation
Indices: 131519358--131519403 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
131519348 CATTTGTAAA
*
131519358 ATTTTATTACTTTATTTATTT
1 ATTTTAGTACTTTATTTATTT
131519379 ATTTTAGTACTTTATTTATTT
1 ATTTTAGTACTTTATTTATTT
131519400 -TTTT
1 ATTTT
131519404 CATTTTTAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (21 bp):
ATTTTAGTACTTTATTTATTT
Found at i:131520567 original size:22 final size:22
Alignment explanation
Indices: 131520541--131520596 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
131520531 ACAAAATAAA
131520541 TTATATTATTATAAATATATTT
1 TTATATTATTATAAATATATTT
131520563 TTATATTATTATAAATATATTT
1 TTATATTATTATAAATATATTT
*
131520585 TTATATTTTTAT
1 TTATATTATTAT
131520597 CTAAACTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
TTATATTATTATAAATATATTT
Found at i:131522158 original size:17 final size:17
Alignment explanation
Indices: 131522138--131522170 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
131522128 ATTAATAATT
*
131522138 ATATTTTAACTAATAAA
1 ATATTTTAAATAATAAA
131522155 ATATTTTAAATAATAA
1 ATATTTTAAATAATAA
131522171 TCACATTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
ATATTTTAAATAATAAA
Found at i:131524513 original size:36 final size:38
Alignment explanation
Indices: 131524472--131524550 Score: 108
Period size: 36 Copynumber: 2.1 Consensus size: 38
131524462 AATCTTTAAG
*
131524472 GATATGCAATCTTAAATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAAATATAATAGCAATCTTAAGATAT
*
131524508 GATATGCAATCTTAGATATAATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAAATATAATA-GCAATCTT-AAGATAT
131524548 GAT
1 GAT
131524551 CTTGTAATCT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
36 21 0.57
38 7 0.19
40 9 0.24
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAAATATAATAGCAATCTTAAGATAT
Found at i:131524519 original size:19 final size:19
Alignment explanation
Indices: 131524472--131524550 Score: 108
Period size: 19 Copynumber: 4.2 Consensus size: 19
131524462 AATCTTTAAG
*
131524472 GATATGCAATCTTAAATAT
1 GATATGCAATCTTAGATAT
131524491 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
131524508 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
131524527 AATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
131524548 GAT
1 GAT
131524551 CTTGTAATCT
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.55
21 8 0.15
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:131524963 original size:16 final size:15
Alignment explanation
Indices: 131524935--131524986 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 15
131524925 TCTATGCATG
131524935 TATATAT-ATTATAT
1 TATATATCATTATAT
131524949 TATATATCATGTATAT
1 TATATATCAT-TATAT
131524965 CGTATATCATCTATTATAT
1 --TATAT-ATC-ATTATAT
131524984 TAT
1 TAT
131524987 TTATGTTTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
14 7 0.22
15 2 0.06
16 5 0.16
17 3 0.09
18 5 0.16
19 8 0.25
20 2 0.06
ACGTcount: A:0.37, C:0.08, G:0.04, T:0.52
Consensus pattern (15 bp):
TATATATCATTATAT
Found at i:131526162 original size:18 final size:17
Alignment explanation
Indices: 131526139--131526201 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
131526129 TATTTGTAAC
131526139 ATTATATATATAAATTTT
1 ATTATAT-TATAAATTTT
*
131526157 ATTATATGTTATATATTTTT
1 ATTATA--TTATA-AATTTT
**
131526177 ATTATATTATTTATTTT
1 ATTATATTATAAATTTT
131526194 ATTATATT
1 ATTATATT
131526202 TTTATATGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
17 12 0.32
18 10 0.26
19 4 0.11
20 12 0.32
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
ATTATATTATAAATTTT
Found at i:131526169 original size:23 final size:20
Alignment explanation
Indices: 131526153--131526200 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 20
131526143 TATATATAAA
131526153 TTTTATTATATGTTATATAT
1 TTTTATTATATGTTATATAT
*
131526173 TTTTATTATA--TTATTTA-
1 TTTTATTATATGTTATATAT
131526190 TTTTATTATAT
1 TTTTATTATAT
131526201 TTTTATATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 10 0.38
18 6 0.23
20 10 0.38
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTTATTATATGTTATATAT
Found at i:131526178 original size:20 final size:18
Alignment explanation
Indices: 131526139--131526208 Score: 79
Period size: 18 Copynumber: 3.8 Consensus size: 18
131526129 TATTTGTAAC
* *
131526139 ATTATATATATAAATTTT
1 ATTATATTTATATATTTT
131526157 ATTATATGTTATATATTTTT
1 ATTATAT-TTATATA-TTTT
*
131526177 ATTATA-TTATTTATTTT
1 ATTATATTTATATATTTT
*
131526194 ATTATATTTTTATAT
1 ATTATATTTATATAT
131526209 GTAAAATATT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
17 10 0.23
18 19 0.43
19 5 0.11
20 10 0.23
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (18 bp):
ATTATATTTATATATTTT
Found at i:131526207 original size:25 final size:28
Alignment explanation
Indices: 131526155--131526208 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
131526145 TATATAAATT
*
131526155 TTATTATATGTTATATATTTTTATTATA
1 TTATTATATGTTATATATATTTATTATA
*
131526183 TTATT-TATTTTAT-TATATTT-TTATA
1 TTATTATATGTTATATATATTTATTATA
131526208 T
1 T
131526209 GTAAAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 6 0.25
26 6 0.25
27 7 0.29
28 5 0.21
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (28 bp):
TTATTATATGTTATATATATTTATTATA
Found at i:131540851 original size:136 final size:136
Alignment explanation
Indices: 131540607--131540891 Score: 552
Period size: 136 Copynumber: 2.1 Consensus size: 136
131540597 CATTGGGCCT
**
131540607 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
131540672 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
131540737 ATATGC
131 ATATGC
131540743 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
131540808 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
131540873 ATATGC
131 ATATGC
131540879 AAGCCCATTTGGG
1 AAGCCCATTTGGG
131540892 GAGACTACTC
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
136 147 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:131542696 original size:26 final size:26
Alignment explanation
Indices: 131542660--131542795 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
131542650 CATGATATTC
131542660 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
131542686 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
131542712 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
131542738 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
131542764 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
131542790 TTATCA
1 TTATCA
131542796 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:131545405 original size:26 final size:26
Alignment explanation
Indices: 131545376--131545429 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
131545366 TGATAAAAAT
131545376 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
131545402 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
131545428 TG
1 TG
131545430 GTAGGCATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.07, G:0.28, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:131546933 original size:25 final size:26
Alignment explanation
Indices: 131546904--131546955 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
131546894 TTTATAGTTT
131546904 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
131546929 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
131546955 T
1 T
131546956 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:131550356 original size:15 final size:16
Alignment explanation
Indices: 131550336--131550369 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
131550326 AAGGATGAGG
131550336 TTCGC-GGAGTGTGCT
1 TTCGCGGGAGTGTGCT
131550351 TTCGCGGGAGTGTGCT
1 TTCGCGGGAGTGTGCT
131550367 TTC
1 TTC
131550370 TGAAATGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.06, C:0.21, G:0.38, T:0.35
Consensus pattern (16 bp):
TTCGCGGGAGTGTGCT
Found at i:131550447 original size:46 final size:46
Alignment explanation
Indices: 131550374--131550738 Score: 455
Period size: 46 Copynumber: 8.0 Consensus size: 46
131550364 GCTTTCTGAA
* *
131550374 ATGAAATGTGTAAGACCATGATGGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
131550420 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
131550466 GTAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
131550512 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
131550558 ATAAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAATATGA-
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * ** ** * *
131550603 CGGGAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * *
131550649 ATGAAATGAGCAAGACCATGGTTGAAAGATACCATGGCAACCTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * *
131550695 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
131550739 TCAAAGATAA
Statistics
Matches: 279, Mismatches: 38, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
45 37 0.13
46 242 0.87
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:131550680 original size:137 final size:138
Alignment explanation
Indices: 131550374--131550733 Score: 488
Period size: 137 Copynumber: 2.6 Consensus size: 138
131550364 GCTTTCTGAA
* * *
131550374 ATGAAATGTGTAAGACCATGATGGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACCAT
* * **
131550439 GGTTGAAAGATACCATGGCAACAGGATGTAAAATGTGTAAGACCATGGTTGAAAGATACCATGGC
66 AGTTGAAAGATACCATGGCAACAGGACGTAAAATGAATAAGACCATGGTTGAAAGATACCATGGC
* *
131550504 AACATGAT
131 AACATAAC
* *
131550512 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACAGGATATAAAATGTGTAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACCAT
* * **
131550577 AGTTGAAAGATACCATGGCAATATGACG-GGAATGAATAAGACCATGGTTGAAAGATACCATGGC
66 AGTTGAAAGATACCATGGCAACAGGACGTAAAATGAATAAGACCATGGTTGAAAGATACCATGGC
**
131550641 AATGTAAC
131 AACATAAC
* * * * * *
131550649 ATGAAATGAGCAAGACCATGGTTGAAAGATACCATGGCAACCTGACAGAAAATGAGTAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACCAT
* *
131550714 AGTTGAAAGACACTATGGCA
66 AGTTGAAAGATACCATGGCA
131550734 TCATGTCAAA
Statistics
Matches: 195, Mismatches: 27, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
137 111 0.57
138 84 0.43
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (138 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACCAT
AGTTGAAAGATACCATGGCAACAGGACGTAAAATGAATAAGACCATGGTTGAAAGATACCATGGC
AACATAAC
Found at i:131551040 original size:16 final size:17
Alignment explanation
Indices: 131551019--131551051 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
131551009 ATGATGGAGC
131551019 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
131551035 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
131551052 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:131553296 original size:24 final size:26
Alignment explanation
Indices: 131553260--131553308 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
131553250 TCAAACATGC
131553260 ATTTAGGTCAATTTAAC-CCTAGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGT
* *
131553285 ATTTCGGT-AATTTATCTCCTAGGG
1 ATTTAGGTCAATTTAACTCCTAGGG
131553309 GTAAAACTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.39
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACTCCTAGGGT
Found at i:131554826 original size:26 final size:26
Alignment explanation
Indices: 131554790--131554925 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
131554780 GACATGATTC
131554790 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
131554816 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
131554842 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
131554868 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
131554894 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
131554920 TTATCA
1 TTATCA
131554926 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:131555927 original size:32 final size:32
Alignment explanation
Indices: 131555886--131555951 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
131555876 GTTCTGAATA
131555886 GAGACATCAAAATTTTTCTAAAAATTAGCTGG
1 GAGACATCAAAATTTTTCTAAAAATTAGCTGG
*
131555918 GAGACATCAAAATTTTTCTGAAAATTAGCTGG
1 GAGACATCAAAATTTTTCTAAAAATTAGCTGG
131555950 GA
1 GA
131555952 TATACAGTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (32 bp):
GAGACATCAAAATTTTTCTAAAAATTAGCTGG
Found at i:131559959 original size:137 final size:137
Alignment explanation
Indices: 131559713--131559999 Score: 520
Period size: 137 Copynumber: 2.1 Consensus size: 137
131559703 TATTGGGCCT
**
131559713 AAGCCCATTCAGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
131559778 AACCCCTTATTCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
66 AACCCCTTATTCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
131559843 CATATGC
131 CATATGC
*
131559850 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* * *
131559915 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AACCCCTTATTCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
131559980 CATATGC
131 CATATGC
131559987 AAGCCCATTTGGG
1 AAGCCCATTTGGG
131560000 GAGACTACTC
Statistics
Matches: 144, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 144 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AACCCCTTATTCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:131560284 original size:25 final size:27
Alignment explanation
Indices: 131560247--131560299 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
131560237 TCAAACATGC
131560247 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
131560273 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
131560299 A
1 A
131560300 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:131561873 original size:25 final size:26
Alignment explanation
Indices: 131561779--131561887 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
131561769 CATGAAATTC
131561779 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
131561805 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
131561831 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
131561857 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
131561882 TTATCA
1 TTATCA
131561888 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 23 0.28
26 58 0.72
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Done.