Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 427 of 438
Found at i:131773790 original size:67 final size:66
Alignment explanation
Indices: 131773650--131773847 Score: 281
Period size: 67 Copynumber: 2.9 Consensus size: 66
131773640 TGAGACGTAG
* * *
131773650 AAATTAAAAGGTTCAACTCACCTCTCGCAATATGAGTTAATAATTTGAAAAGTAGATTTCGAAAA
1 AAATT-AAAGGCTCAACTCACCTCTCGCAATATGAGTT-AT-CTTTGAAAAGTAGATTTTGAAAA
131773715 ACGA
63 ACGA
*
131773719 AAATTAAAGGCTCAACTCACCTCTCGCAATGTGAGTTGATCTTTGAAAAGTAGATTTTGAAAAAC
1 AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTT-ATCTTTGAAAAGTAGATTTTGAAAAAC
131773784 GA
65 GA
* * *
131773786 AAATTAAAGGCTCAACTCACCTCTCGCAATATGAATTAACTTTTGAAAA-TAGAATTTGAAAA
1 AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTATC-TTTGAAAAGTAGATTTTGAAAA
131773848 TACCTTAGCG
Statistics
Matches: 119, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
66 14 0.12
67 68 0.57
68 32 0.27
69 5 0.04
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (66 bp):
AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTATCTTTGAAAAGTAGATTTTGAAAAACG
A
Found at i:131773959 original size:71 final size:72
Alignment explanation
Indices: 131773725--131773971 Score: 231
Period size: 71 Copynumber: 3.5 Consensus size: 72
131773715 ACGAAAATTA
* * * *
131773725 AAGGCTCAACTCACCTCTCGCAATGTGAGTTGATCTTTGAAAAGTAGATTTTGAAAA-A-C-GAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-TAGAATTTGAAAATACCTTAA
** **
131773787 AAT---TA
65 CGTGCCGC
* * * *
131773792 AAGGCTCAACTCACCTCTCGCAATATGAATTAACTTTTGAAAATAGAATTTGAAAATACCTTAGC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAATTTGAAAATACCTTAAC
131773857 GTGCCGC
66 GTGCCGC
* * * *
131773864 AAGGTTCAACTCACTTCTCACAATATGAGTTGATTTTTGAAACATA-AA-TTGAAATTACCTTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-ATAGAATTTGAAAATACCTTAA
* **
131773927 CGTGTCTT
65 CGTGCCGC
* *
131773935 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
131773972 CTTGGAAAAC
Statistics
Matches: 145, Mismatches: 28, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
66 12 0.08
67 39 0.27
68 1 0.01
69 2 0.01
71 50 0.34
72 38 0.26
73 3 0.02
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.31
Consensus pattern (72 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAATTTGAAAATACCTTAAC
GTGCCGC
Found at i:131774105 original size:160 final size:160
Alignment explanation
Indices: 131773841--131774543 Score: 1273
Period size: 160 Copynumber: 4.4 Consensus size: 160
131773831 AAAATAGAAT
* * * *
131773841 TTGAAAATACCTTAGCGTGCCGC-AAGGTTCAACTCACTTCTCACAATATGAGTTGATTTTTGAA
1 TTGAAAATACCTCAGCGTGCC-CTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAA
*
131773905 ACATAAATTGAAATTACCTTAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
65 ACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
131773970 TTCTTGGAAAACATGAATTAAAAAGCAAAAA
130 TTCTTGGAAAACATGAATTAAAAAGCAAAAA
*
131774001 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTGAAA
1 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAA
*
131774066 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTT
66 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
*
131774131 TCTTGGAAAACATGAATTAAAAAGGCAGAAA
131 TCTTGGAAAACATGAATTAAAAA-GCAAAAA
131774162 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAA
1 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAA
131774227 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
66 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
131774292 TCTTGGAAAACATGAATTAAAAAGCAAAAA
131 TCTTGGAAAACATGAATTAAAAAGCAAAAA
131774322 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAA
1 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAA
*
131774387 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCTCAATATGAGCTGATTT
66 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
* *
131774452 TCTTGGAAAACATGAATTAAAAAGTAGAAA
131 TCTTGGAAAACATGAATTAAAAAGCAAAAA
*
131774482 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCGATATGAGTTGATTTTTG
1 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
131774544 GAAAAAACAA
Statistics
Matches: 526, Mismatches: 15, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
159 1 0.00
160 368 0.70
161 157 0.30
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.30
Consensus pattern (160 bp):
TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAA
CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
TCTTGGAAAACATGAATTAAAAAGCAAAAA
Found at i:131774114 original size:71 final size:70
Alignment explanation
Indices: 131773998--131774131 Score: 196
Period size: 71 Copynumber: 1.9 Consensus size: 70
131773988 TAAAAAGCAA
* * * *
131773998 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG-TTTTTG
131774063 AAACAT
65 AAACAT
* * *
131774069 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTTT
131774132 CTTGGAAAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
70 5 0.09
71 51 0.91
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.32
Consensus pattern (70 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTTTGA
AACAT
Found at i:131774217 original size:321 final size:320
Alignment explanation
Indices: 131773836--131774543 Score: 1292
Period size: 321 Copynumber: 2.2 Consensus size: 320
131773826 TTTTGAAAAT
* * * * *
131773836 AGAATTTGAAAATACCTTAGCGTGCCGC-AAGGTTCAACTCACTTCTCACAATATGAGTTGATTT
1 AGAAATTGAAAATACCTCAGCGTGCC-CTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
*
131773900 TTGAAACATAAATTGAAATTACCTTAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGC
65 TTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGC
131773965 TGATTTTCTTGGAAAACATGAATTAAAAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCT
130 TGATTTTCTTGGAAAACATGAATTAAAAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCT
*
131774030 CAACTTACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
195 CAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
*
131774095 GAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTTTCTTGGAAAACATGAATTAAAAAGGC
260 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAA-GC
131774157 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
131774222 TGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCT
66 TGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCT
131774287 GATTTTCTTGGAAAACATGAATTAAAAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTC
131 GATTTTCTTGGAAAACATGAATTAAAAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTC
131774352 AACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
196 AACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
* *
131774417 AGGCTCAACTCACCTCTCTCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGT
261 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGC
*
131774477 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCGATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
131774542 TG
66 TG
131774544 GAAAAAACAA
Statistics
Matches: 375, Mismatches: 11, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
320 68 0.18
321 307 0.82
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.30
Consensus pattern (320 bp):
AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
TGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCT
GATTTTCTTGGAAAACATGAATTAAAAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTC
AACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGC
Found at i:131774275 original size:71 final size:71
Alignment explanation
Indices: 131774159--131774292 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
131774149 AAAAAGGCAG
* * *
131774159 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
131774224 AAACAT
66 AAACAT
* * *
131774230 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
131774293 CTTGGAAAAC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:131774440 original size:71 final size:71
Alignment explanation
Indices: 131774319--131774452 Score: 205
Period size: 71 Copynumber: 1.9 Consensus size: 71
131774309 TAAAAAGCAA
* * *
131774319 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
131774384 AAACAT
66 AAACAT
* * * *
131774390 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCTCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
131774453 CTTGGAAAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 56 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:131791443 original size:18 final size:18
Alignment explanation
Indices: 131791417--131791467 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
131791407 ATAATAGTTT
*
131791417 TAAAAAAATAATATATAG
1 TAAATAAATAATATATAG
131791435 TAAATAAATAAT-TA-A-
1 TAAATAAATAATATATAG
*
131791450 TTAATAAA-AATATATAG
1 TAAATAAATAATATATAG
131791467 T
1 T
131791468 GTGAGTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
14 3 0.11
15 9 0.32
16 2 0.07
17 3 0.11
18 11 0.39
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (18 bp):
TAAATAAATAATATATAG
Found at i:131793605 original size:20 final size:22
Alignment explanation
Indices: 131793571--131793610 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
131793561 AAATATATAC
*
131793571 ATATATCATATTAAA-AAAAGA
1 ATATATCATAATAAATAAAAGA
131793592 ATATA-CATAATAAATAAAA
1 ATATATCATAATAAATAAAA
131793611 AAACATGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.28
Consensus pattern (22 bp):
ATATATCATAATAAATAAAAGA
Found at i:131793916 original size:26 final size:28
Alignment explanation
Indices: 131793864--131793916 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 28
131793854 TATACGTATA
***
131793864 ATATAGTTATATAAAAAATACGTACAAC
1 ATATAGTTATATAAAAAATAAACACAAC
131793892 ATATAG-TAT-TAAAAAATAAACACAA
1 ATATAGTTATATAAAAAATAAACACAA
131793917 TATAGATGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 13 0.59
27 3 0.14
28 6 0.27
ACGTcount: A:0.58, C:0.09, G:0.06, T:0.26
Consensus pattern (28 bp):
ATATAGTTATATAAAAAATAAACACAAC
Found at i:131794534 original size:22 final size:22
Alignment explanation
Indices: 131794478--131794524 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
131794468 ATAATATTAG
* *
131794478 AATAATAATGACAATATTTAAT
1 AATAATAATAAAAATATTTAAT
131794500 AATAATAATAAAAATATTTAAT
1 AATAATAATAAAAATATTTAAT
131794522 AAT
1 AAT
131794525 GAAACAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (22 bp):
AATAATAATAAAAATATTTAAT
Found at i:131795571 original size:26 final size:26
Alignment explanation
Indices: 131795542--131795649 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
131795532 TGATACAAAT
131795542 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
131795568 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
131795594 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
131795620 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
131795646 TGAT
1 TGAT
131795650 GGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:131799544 original size:40 final size:40
Alignment explanation
Indices: 131799489--131799692 Score: 194
Period size: 40 Copynumber: 5.1 Consensus size: 40
131799479 TGAATGATAC
* *
131799489 CCGGGCTAAGTCCCGAAGACAATTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGTAATTATAT
* * * *
131799529 CCGGGGTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGTAATTATAT
* * **
131799569 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-ATGCTAGTAATTATAT
* * * * ** *
131799609 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGTAATTATAT
* * * **
131799649 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGTAATTATAT
131799689 CCGG
1 CCGG
131799693 TTAAATCCCG
Statistics
Matches: 136, Mismatches: 26, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 2 0.01
40 132 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTATGCTAGTAATTATAT
Found at i:131799624 original size:80 final size:80
Alignment explanation
Indices: 131799489--131799692 Score: 230
Period size: 80 Copynumber: 2.5 Consensus size: 80
131799479 TGAATGATAC
* * * * ** * *
131799489 CCGGGCTAAGTCCCGAAGACAATTATGCTAGTAATTATATCCGGGGTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTTA
* ** *
131799554 TGCTAGTGATTATAT
66 TGCAAGTGACCAAAT
*
131799569 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTT
* *
131799633 GTGCAAGTTACCAAAT
65 ATGCAAGTGACCAAAT
* **
131799649 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATATCCGG
131799693 TTAAATCCCG
Statistics
Matches: 104, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 3 0.03
80 98 0.94
81 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCAAGTGACCAAAT
Found at i:131804445 original size:9 final size:9
Alignment explanation
Indices: 131804431--131804456 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
131804421 GCCAAAAGAA
131804431 AAGAAAAAG
1 AAGAAAAAG
131804440 AAGAAAAAG
1 AAGAAAAAG
131804449 AAGAAAAA
1 AAGAAAAA
131804457 AACAAATTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (9 bp):
AAGAAAAAG
Found at i:131805878 original size:22 final size:21
Alignment explanation
Indices: 131805835--131805906 Score: 78
Period size: 23 Copynumber: 3.5 Consensus size: 21
131805825 CTTCTATTTC
131805835 AAAA-AAAAAG-GAAAAAAG-
1 AAAAGAAAAAGAGAAAAAAGA
*
131805853 AAAAGAAAAAGAGAAAATAATA
1 AAAAGAAAAAGAGAAAA-AAGA
* *
131805875 AAAATAAAAAAGAGAAAAAAGG
1 AAAA-GAAAAAGAGAAAAAAGA
131805897 AAAAGAAAAA
1 AAAAGAAAAA
131805907 TGGAGAGGCC
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
18 4 0.09
19 6 0.14
20 5 0.11
21 7 0.16
22 10 0.23
23 12 0.27
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (21 bp):
AAAAGAAAAAGAGAAAAAAGA
Found at i:131806995 original size:84 final size:84
Alignment explanation
Indices: 131806854--131807550 Score: 1039
Period size: 84 Copynumber: 8.3 Consensus size: 84
131806844 CAAAATTCAG
*
131806854 CGCCTTAATCCCCTAACCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
131806919 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
131806938 CGCCTTAATCCCCCAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
131807003 GTGGAGTAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
**** *
131807022 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTTTAAAAGCAGCA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
131807087 GTGGAGTAGATTGAAGACT
66 GTGGAGCAGATCGAAGACT
*
131807106 CGCCTTAATCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
131807171 GCGGAGCAGATCGACGACT
66 GTGGAGCAGATCGAAGACT
* * *
131807190 CGCCTTAATCCCCTAAGCGGGAGGGTAATAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
131807255 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
*
131807274 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
131807334 GCGGAGCAGATCGACGATGACT
66 GTGGAGCAGATCGA--A-GACT
* * *
131807356 CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAACCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
131807421 GTGGAGCAGATCGAAGACC
66 GTGGAGCAGATCGAAGACT
* *
131807440 CGTCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--TCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
131807503 GCGGAGCAGATCGAAGACGAT
66 GTGGAGCAGATCGAAGAC--T
* *
131807524 GCACCTTAACCCCCTAAGCAGTAGGGT
1 -CGCCTTAATCCCCTAAGCAGTAGGGT
131807551 CCAAGATGAT
Statistics
Matches: 552, Mismatches: 50, Indels: 21
0.89 0.08 0.03
Matches are distributed among these distances:
79 40 0.07
81 1 0.00
82 64 0.12
84 386 0.70
85 23 0.04
87 38 0.07
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACT
Found at i:131807036 original size:41 final size:41
Alignment explanation
Indices: 131806907--131807462 Score: 158
Period size: 41 Copynumber: 13.3 Consensus size: 41
131806897 GATCTTATCT
131806907 CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
* * * * * * *
131806948 CCCCAAGTAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C-G-CCTTAATC
*
131806990 TCCCTAAGCAGTAGTGGAGTAGATCGAAGACTCGCCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
* * * * *
131807032 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-AT-
1 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C-G-CCTTAATC
** * * *
131807073 CTTTAAAAGCAGCAGTGGAGTAGATTGAAGACTCGCCTTAATC
1 CCCT--AAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
* * * * * *
131807116 CCTTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C-G-CCTTAATC
* *
131807158 TCCCTAAGCAGTAGCGGAGCAGATCGACGACTCGCCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
* * ** * * * *
131807200 CCCTAAGCGGGAG-GGTAATAGGT-TAA-ATTTGCAGATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C-G-CCTTAATC
131807242 TCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
* * *
131807284 CCCTAAGCAGTAG-GGTAACAGGTTCGCAGA-T---CTT-ATC
1 CCCTAAGCAGTAGTGG-AGCA-GATCGAAGACTCGCCTTAATC
* *
131807321 TCCCTAAGCAGTAGCGGAGCAGATCGACGATGACTCACCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGATCGA--A-GACTCGCCTTAATC
* * * * *
131807366 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTACAGATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C-G-CCTTAATC
* * *
131807408 TCCCTAACCAGTAGTGGAGCAGATCGAAGACCCGTCTTAATC
1 -CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
*
131807450 CCCTAAGTAGTAG
1 CCCTAAGCAGTAG
131807463 GGTAACAGGT
Statistics
Matches: 369, Mismatches: 82, Indels: 128
0.64 0.14 0.22
Matches are distributed among these distances:
37 7 0.02
38 19 0.05
39 8 0.02
40 24 0.07
41 113 0.31
42 44 0.12
43 102 0.28
44 44 0.12
45 8 0.02
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (41 bp):
CCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATC
Found at i:131809172 original size:27 final size:27
Alignment explanation
Indices: 131809142--131809258 Score: 164
Period size: 27 Copynumber: 4.3 Consensus size: 27
131809132 TACTGAAATG
*
131809142 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
131809169 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
*
131809196 CCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
**
131809223 CCCTC-AGTTTACAAAATTACTGTTTTA
1 CCCTCGA-TTTACAAAATTACCATTTTA
131809250 CCCTCGATT
1 CCCTCGATT
131809259 GTGAAATTAC
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 1 0.01
27 78 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:131809320 original size:27 final size:27
Alignment explanation
Indices: 131809290--131809413 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
131809280 TGTAGGATAG
*
131809290 AATTACTAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
131809317 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
131809344 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
131809371 AATTACCGAAATA-CCTTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
131809398 AATTACCAAAATACCC
1 AATTACCAAAATACCC
131809414 ATGATTTACA
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.02
27 80 0.95
28 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:131809332 original size:54 final size:53
Alignment explanation
Indices: 131809257--131809412 Score: 150
Period size: 54 Copynumber: 2.9 Consensus size: 53
131809247 TTACCCTCGA
* * * * *
131809257 TTGTGAAATTACTAAAATACCCTTGTAGGATAGAATTACTAAAATACCCCTAGT
1 TTGTGAAATTACCAAAATACCCTAGTAGG-TAAAATTACCAAAATACCACTAGT
* ** * *
131809311 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTGGT
1 TTGTGAAATTACCAAAATA-CCCTAGTAGGTAAAATTACCAAAATACCACTAGT
* * * **
131809365 TTGTGAAATTACCGAAATACCTTCAATTTGTAAAATTACCAAAATACC
1 TTGTGAAATTACCAAAATACCCT-AGTAGGTAAAATTACCAAAATACC
131809413 CATGATTTAC
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 3 0.04
54 75 0.88
55 7 0.08
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.31
Consensus pattern (53 bp):
TTGTGAAATTACCAAAATACCCTAGTAGGTAAAATTACCAAAATACCACTAGT
Found at i:131809420 original size:27 final size:27
Alignment explanation
Indices: 131809290--131809440 Score: 141
Period size: 27 Copynumber: 5.6 Consensus size: 27
131809280 TGTAGGATAG
* *
131809290 AATTACTAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCATAGTTTGTAA
*
131809317 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCATAGTTTGTAA
* * *
131809344 AATTACCGAAATA-CCACTGGTTTGTGA
1 AATTACCAAAATACCCA-TAGTTTGTAA
*
131809371 AATTACCGAAATACCTTCA-A-TTTGTAA
1 AATTACCAAAATACC--CATAGTTTGTAA
**
131809398 AATTACCAAAATACCCAT-GATTTACAA
1 AATTACCAAAATACCCATAG-TTTGTAA
131809425 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
131809441 TTGACTTTCT
Statistics
Matches: 106, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
25 2 0.02
26 4 0.04
27 97 0.92
28 1 0.01
30 2 0.02
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCATAGTTTGTAA
Found at i:131809428 original size:54 final size:54
Alignment explanation
Indices: 131809315--131809496 Score: 145
Period size: 54 Copynumber: 3.3 Consensus size: 54
131809305 CCTAGTTTGT
* * * * **
131809315 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTGGTTTGT
1 AAAATTACCGAAATACCCCTAATTTGTAAAATTACCAAAATACCACTGATTTAC
* *
131809369 GAAATTACCGAAATA-CCTTCAATTTGTAAAATTACCAAAATACC-CATGATTTAC
1 AAAATTACCGAAATACCCCT-AATTTGTAAAATTACCAAAATACCAC-TGATTTAC
* * * * * * * *
131809423 AAAATTACAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATGCCATTGGTTTAC
1 AAAATTACCGAAATACCCCT-AATTTGT-AAAATTACCA-AAATACCACTGATTTAC
*
131809479 AAAATTACTGAAATACCC
1 AAAATTACCGAAATACCC
131809497 TTGGTTTGTA
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
53 4 0.04
54 53 0.51
55 10 0.10
56 37 0.36
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (54 bp):
AAAATTACCGAAATACCCCTAATTTGTAAAATTACCAAAATACCACTGATTTAC
Found at i:131809491 original size:27 final size:27
Alignment explanation
Indices: 131809418--131809503 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 27
131809408 ATACCCATGA
* * *
131809418 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTATAGAAATACCATTG-G
*
131809446 TTT-CTAAAAATTATAGAAATGCCATTGG
1 TTTAC--AAAATTATAGAAATACCATTGG
*
131809474 TTTACAAAATTACT-GAAATACCCTTGG
1 TTTACAAAATTA-TAGAAATACCATTGG
131809501 TTT
1 TTT
131809504 GTAGATTTAC
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
27 22 0.46
28 7 0.15
29 19 0.40
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCATTGG
Found at i:131810513 original size:24 final size:25
Alignment explanation
Indices: 131810432--131810500 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
131810422 GGAAGTGCTA
* *
131810432 AAAGGGCTTTGCCTCAGTTTA-CCG
1 AAAGGGCTTTGCCCCAGTTTATCAG
* *
131810456 AAAAGGCCTATGCCCCAGTTTATCAG
1 -AAAGGGCTTTGCCCCAGTTTATCAG
131810482 AAAGGGCTTTGCCCCAGTT
1 AAAGGGCTTTGCCCCAGTT
131810501 ATTAAAAGAG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
25 35 0.95
26 2 0.05
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAGGGCTTTGCCCCAGTTTATCAG
Found at i:131810707 original size:42 final size:42
Alignment explanation
Indices: 131810648--131810781 Score: 259
Period size: 42 Copynumber: 3.2 Consensus size: 42
131810638 TAGTCTCCCC
131810648 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
131810690 AAATGGGCTTACATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
131810732 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
131810774 AAATGGGC
1 AAATGGGC
131810782 CTAAGGGCCA
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 90 1.00
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:131810840 original size:31 final size:31
Alignment explanation
Indices: 131810805--131810888 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
131810795 CGTTTACAGT
*
131810805 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
131810836 AAAGGCTTCGGCCTAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
131810867 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
131810889 TCAAGACTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:131812550 original size:84 final size:84
Alignment explanation
Indices: 131812409--131813186 Score: 1201
Period size: 84 Copynumber: 9.3 Consensus size: 84
131812399 CAAAATTCAG
131812409 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
131812474 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* * *
131812493 CGCCTTAATCCCTTAAGCAGTAGGATAACAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
131812558 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* * *
131812577 CTCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTTCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
131812642 GTGGAGTAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
131812661 CGCCTTAATCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCCGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
131812726 GTGGAGTAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* * *
131812745 CGCCTTAATCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTTCCTAAGCAATA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
131812810 GCGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
131812829 CGCCTTAATCCTCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
131812894 GTGGAGTAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
*
131812913 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
131812973 GTGAAGCAGATCGACGACGACT
66 GTGGAGCAGATCGA--A-GACT
*
131812995 CGCCTTAATCCCCTAAGCAGTAGGATAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * *
131813060 GTGGAGGAGATCGAAAACC
66 GTGGAGCAGATCGAAGACT
**
131813079 CGTTTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--TCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
131813142 GCGGAGCAGATCGAAGACGAT
66 GTGGAGCAGATCGAAGAC--T
* *
131813163 GCACCTTAACCCCCTAAGCAGTAG
1 -CGCCTTAATCCCCTAAGCAGTAG
131813187 AGTCTAAGAT
Statistics
Matches: 634, Mismatches: 49, Indels: 21
0.90 0.07 0.03
Matches are distributed among these distances:
79 39 0.06
81 1 0.00
82 63 0.10
84 472 0.74
85 20 0.03
87 39 0.06
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACT
Found at i:131813134 original size:41 final size:41
Alignment explanation
Indices: 131813005--131813142 Score: 113
Period size: 41 Copynumber: 3.3 Consensus size: 41
131812995 CGCCTTAATC
*
131813005 CCCTAAGCAGTAGGATAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--T
** * * ** * *
131813048 CCCTAAGCAGTAGTGG-AGGAGATCGAAA--ACCCG-TTTTAAT
1 CCCTAAGCAGTAG-GGTAACAGGT-TAAATTTGCAGATCTT-AT
131813088 CCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTAT
1 -CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTAT
131813130 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
131813143 CGGAGCAGAT
Statistics
Matches: 70, Mismatches: 17, Indels: 18
0.67 0.16 0.17
Matches are distributed among these distances:
40 6 0.09
41 33 0.47
42 7 0.10
43 20 0.29
44 4 0.06
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (41 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTAT
Found at i:131814810 original size:84 final size:84
Alignment explanation
Indices: 131814701--131815381 Score: 953
Period size: 84 Copynumber: 8.2 Consensus size: 84
131814691 AGATCTTATC
*
131814701 TCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
1 TCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
131814766 GATCGAAGACTCGCCTTAA
66 GATCGAAGACTCGCCTTAA
* * * * * *
131814785 TCCCATAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTTTCCTATGCAATAGTGGAGCA
1 TCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
131814850 GATCGAAGACTCGCCTTAA
66 GATCGAAGACTCGCCTTAA
*
131814869 TCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAAG-AGTAGTGGAGG
1 TCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCT-AAGCAGTAGTGGAGC
131814933 AGATCGAAGACTCGCCTTAA
65 AGATCGAAGACTCGCCTTAA
* * *
131814953 TCCCTTAAGCAGTAGAGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGCGGAGCA
1 TCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
*
131815018 GATCGAAGACTTGCCTTAA
66 GATCGAAGACTCGCCTTAA
* *
131815037 T-CCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCTTAAGCAGTAGTGGAGCA
1 TCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
131815101 GATCGAAGACTCGCCTTAA
66 GATCGAAGACTCGCCTTAA
* * *
131815120 TCCCCTAAGTAGTAGGGTAACAGG------TT-C-G--C--ATCTCCCTAAGCAGTAGCGGAGCC
1 TCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
131815173 GATCGACGACGACTCGCCTTAA
66 GATCGA--A-GACTCGCCTTAA
* *
131815195 TCCCCTAAACAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAATGGAGCA
1 TCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
* **
131815260 GATCGAAAACTCGTATTAA
66 GATCGAAGACTCGCCTTAA
* *
131815279 TCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTA--TCCCTAAGCAGTAGCGGAGCA
1 TCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
*
131815342 GATCGAAGACGATGCACCTTAA
66 GATCGAAGAC--T-CGCCTTAA
*
131815364 CCCCCTAAGCAGTAGGGT
1 TCCCCTAAGCAGTAGGGT
131815382 CCAAGATGAT
Statistics
Matches: 530, Mismatches: 46, Indels: 41
0.86 0.07 0.07
Matches are distributed among these distances:
72 27 0.05
74 2 0.00
75 34 0.06
76 1 0.00
77 1 0.00
78 2 0.00
81 2 0.00
82 29 0.05
83 81 0.15
84 298 0.56
85 26 0.05
87 27 0.05
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (84 bp):
TCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
GATCGAAGACTCGCCTTAA
Found at i:131814810 original size:128 final size:127
Alignment explanation
Indices: 131814573--131815093 Score: 502
Period size: 128 Copynumber: 4.1 Consensus size: 127
131814563 AGCGCCTTAA
* * *
131814573 TCCCCTAACCAGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
1 TCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
131814638 GATCGAAGACTCGCCTTAATCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
66 GATCGAAGACTCGCCTTAATCCC-TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
131814701 TCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
1 TCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
* *
131814766 GATCGAAGACTCGCCTTAATCCCATAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATT
66 GATCGAAGACTCGCCTTAATCCC-TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
* * * * * * * *
131814829 TTCC-TATGCAATAGTGG-AGCAGATCGAAGA-CT-C-G-CCTTAATC-CCCTAAGCAGTAG-GG
1 TCCCTTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATCTCCCTAAGCAGTAGTGG
* * * * * * ** * * *
131814886 TAACAGGT-TAA-ATTTGCAGATCTTATCTCCCTAAAG-AGTAGTGG-AGGAGATCGAAGA-CT-
62 -AGCAGATCGAAGA-CT-C-G-CCTTA-ATCCCT-AAGCAGTAG-GGTAACAGGT-TAA-ATTTG
* *
131814945 C-G-CCTTA-A
117 CAGATCTTATC
* *
131814953 TCCCTTAAGCAGTAGAGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGCGGAGCA
1 TCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
* *
131815018 GATCGAAGACTTGCCTTAATCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
66 GATCGAAGACTCGCCTTAATCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
131815080 T-CCTTAAGCAGTAG
1 TCCCTTAAGCAGTAG
131815094 TGGAGCAGAT
Statistics
Matches: 311, Mismatches: 51, Indels: 64
0.73 0.12 0.15
Matches are distributed among these distances:
122 1 0.00
123 10 0.03
124 26 0.08
125 45 0.14
126 28 0.09
127 51 0.16
128 147 0.47
129 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (127 bp):
TCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
GATCGAAGACTCGCCTTAATCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
Found at i:131815211 original size:75 final size:72
Alignment explanation
Indices: 131815077--131815304 Score: 222
Period size: 75 Copynumber: 3.0 Consensus size: 72
131815067 TGCAGATCTT
* * **
131815077 ATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGTAGTAGGGTAACA
1 ATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAACAGTAGGGTAACA
131815142 GGTTCGC
66 GGTTCGC
*
131815149 ATCTCCCTAAGCAGTAGCGGAGCCGATCGACGACGACTCGCCTTAATCCCCTAAACAGTAGGGTA
1 ATCTCCCTAAGCAGTAGCGGAGCAGATCGA--A-GACTCGCCTTAATCCCCTAAACAGTAGGGTA
131815214 ACAGGTTAAATTTGCAGATC
63 ACAGG------TT-C-G--C
** * ** *
131815234 TTATCTCCCTAAGCAGTAATGGAGCAGATCGAAAACTCGTATTAATCCCCTAAGCAGTAGGGTAA
1 --ATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAACAGTAGGGTAA
131815299 CAGGTT
64 CAGGTT
131815305 AAATTTGTAG
Statistics
Matches: 129, Mismatches: 12, Indels: 24
0.78 0.07 0.15
Matches are distributed among these distances:
72 27 0.21
74 1 0.01
75 34 0.26
78 2 0.02
81 2 0.02
82 1 0.01
83 1 0.01
84 32 0.25
85 2 0.02
87 27 0.21
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (72 bp):
ATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAACAGTAGGGTAACA
GGTTCGC
Found at i:131815326 original size:41 final size:41
Alignment explanation
Indices: 131815197--131815334 Score: 113
Period size: 41 Copynumber: 3.3 Consensus size: 41
131815187 CGCCTTAATC
* *
131815197 CCCTAAACAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTA--T
* * * * * * *
131815240 CCCTAAGCAGTAATGG-AGCAGATCGAAAACTCGT--AT-TAAT
1 CCCTAAGCAGT-AGGGTAACAGGT--TAAATTTGTAGATCTTAT
131815280 CCCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTAT
1 -CCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTAT
131815322 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
131815335 CGGAGCAGAT
Statistics
Matches: 71, Mismatches: 16, Indels: 18
0.68 0.15 0.17
Matches are distributed among these distances:
39 6 0.08
40 4 0.06
41 31 0.44
42 5 0.07
43 17 0.24
44 3 0.04
45 5 0.07
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (41 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTAT
Found at i:131815785 original size:8 final size:7
Alignment explanation
Indices: 131815772--131815825 Score: 51
Period size: 7 Copynumber: 7.9 Consensus size: 7
131815762 TAAGTTCAAA
131815772 AAAAAAGG
1 AAAAAA-G
131815780 AAAAAAG
1 AAAAAAG
*
131815787 AAAATA-
1 AAAAAAG
*
131815793 AAAAGAG
1 AAAAAAG
131815800 AAAAAA-
1 AAAAAAG
131815806 ATAAAAA-
1 A-AAAAAG
131815813 AAAAAAG
1 AAAAAAG
131815820 AAAAAA
1 AAAAAA
131815826 AATAGAGGGG
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
6 11 0.28
7 23 0.57
8 6 0.15
ACGTcount: A:0.85, C:0.00, G:0.11, T:0.04
Consensus pattern (7 bp):
AAAAAAG
Found at i:131815785 original size:11 final size:10
Alignment explanation
Indices: 131815780--131815827 Score: 60
Period size: 11 Copynumber: 4.5 Consensus size: 10
131815770 AAAAAAAAGG
131815780 AAAAAAGAAA
1 AAAAAAGAAA
131815790 ATAAAAAGAGAA
1 A-AAAAAGA-AA
*
131815802 AAAAATAAAAA
1 AAAAA-AGAAA
131815813 AAAAAAGAAA
1 AAAAAAGAAA
131815823 AAAAA
1 AAAAA
131815828 TAGAGGGGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
10 10 0.30
11 18 0.55
12 5 0.15
ACGTcount: A:0.88, C:0.00, G:0.08, T:0.04
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:131815795 original size:21 final size:20
Alignment explanation
Indices: 131815769--131815826 Score: 80
Period size: 21 Copynumber: 2.9 Consensus size: 20
131815759 AAATAAGTTC
*
131815769 AAAAAAAAAGGAAAAAAGAA
1 AAAAAAAAAGAAAAAAAGAA
* *
131815789 AATAAAAAGAGAAAAAAATAA
1 AA-AAAAAAAGAAAAAAAGAA
131815810 AAAAAAAAAGAAAAAAA
1 AAAAAAAAAGAAAAAAA
131815827 ATAGAGGGGC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 16 0.48
21 17 0.52
ACGTcount: A:0.86, C:0.00, G:0.10, T:0.03
Consensus pattern (20 bp):
AAAAAAAAAGAAAAAAAGAA
Found at i:131815802 original size:20 final size:18
Alignment explanation
Indices: 131815769--131815827 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 18
131815759 AAATAAGTTC
131815769 AAAAAAAAAG-GAAAAAA
1 AAAAAAAAAGAGAAAAAA
131815786 GAAAATAAAAAGAGAAAAAAA
1 -AAAA-AAAAAGAG-AAAAAA
*
131815807 TAAAAAAAAAAAGAAAAAA
1 -AAAAAAAAAGAGAAAAAA
131815826 AA
1 AA
131815828 TAGAGGGGCC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
18 6 0.17
19 12 0.33
20 8 0.22
21 10 0.28
ACGTcount: A:0.86, C:0.00, G:0.10, T:0.03
Consensus pattern (18 bp):
AAAAAAAAAGAGAAAAAA
Found at i:131815805 original size:22 final size:19
Alignment explanation
Indices: 131815769--131815827 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 19
131815759 AAATAAGTTC
*
131815769 AAAAAAAAAGGAAAAAAGAA
1 AAAAAAAAAAGAAAAAA-AA
* *
131815789 AATAAAAAGAGAAAAAAATA
1 AAAAAAAAAAGAAAAAAA-A
131815809 AAAAAAAAAAGAAAAAAAA
1 AAAAAAAAAAGAAAAAAAA
131815828 TAGAGGGGCC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.86, C:0.00, G:0.10, T:0.03
Consensus pattern (19 bp):
AAAAAAAAAAGAAAAAAAA
Found at i:131816917 original size:84 final size:84
Alignment explanation
Indices: 131816776--131817716 Score: 1273
Period size: 84 Copynumber: 11.4 Consensus size: 84
131816766 AAATTCAACA
* *
131816776 CCTTAATCCCCTAACCAGTAGAGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
131816841 GGAGCAGATCGAAGACTCG
66 GGAGCAGATCGAAGACTCG
* * *
131816860 CCTTAATCCCTTAAGCAATAGGGTAACAGGTTAAATTAGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
131816925 GGAGCAGATCGAA-A-TC-
66 GGAGCAGATCGAAGACTCG
*
131816941 CC----T----TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTTCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
131816998 GGAGCAGATCGAAGACTCA
66 GGAGCAGATCGAAGACTCG
* * *
131817017 CCTTAATCCCCTAAGTAGTAGGGTAATAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
* *
131817082 GGAGCAGATCAAAAACTCG
66 GGAGCAGATCGAAGACTCG
* * * *
131817101 GCTTAATCCCCTAAGCAGTAGGATAACAGG-----TTCGCAGATCTTATCTCCGTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
131817161 GGAGCAGATCGACGACGACTCA
66 GGAGCAGATCGA--A-GACTCG
*
131817183 CCTTAATCCCCTAAGCAGTAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
131817248 GGAGCAGATCGAAGACTCA
66 GGAGCAGATCGAAGACTCG
* * *
131817267 CCTTAATTCCCTAAGCAGTAGGGTAACAGGTTAAATTTCCAGATCTTATCTCCCTAAGTAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
* *
131817332 GGAGCAGATCGAAGGCTTG
66 GGAGCAGATCGAAGACTCG
* * *
131817351 CTTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAATAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
131817416 GGAGCAGATCGAAGACTTG
66 GGAGCAGATCGAAGACTCG
* * * *
131817435 CCTTAATCCCCTAAGCAGTAAGGTAATAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTAGC
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
131817495 GGAGCAGATCGACGACGACTCG
66 GGAGCAGATCGA--A-GACTCG
*
131817517 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
131817582 GGAGCAGATCGAAGAC-CC
66 GGAGCAGATCGAAGACTCG
* * * *
131817600 CCTTAATCCCCTAAGCGGTAGAGTAACAGGTTAAATTTACAGATCTTA--TCCCTAAGCAGTAGC
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
131817663 GGAGCAGATCGAAGGAGATACG
66 GGAGCAGATCGAA-GA-CT-CG
*
131817685 CCTTAACCCCCTAAGCAGTAGGGTAACAGGTT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTT
131817717 GAAGACATAG
Statistics
Matches: 758, Mismatches: 68, Indels: 61
0.85 0.08 0.07
Matches are distributed among these distances:
73 64 0.08
74 1 0.00
75 2 0.00
76 2 0.00
77 1 0.00
79 77 0.10
80 1 0.00
81 31 0.04
82 68 0.09
83 46 0.06
84 354 0.47
85 32 0.04
87 79 0.10
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (84 bp):
CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
GGAGCAGATCGAAGACTCG
Found at i:131816991 original size:43 final size:43
Alignment explanation
Indices: 131816939--131817410 Score: 176
Period size: 43 Copynumber: 11.2 Consensus size: 43
131816929 CAGATCGAAA
131816939 TCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
1 TCCC-TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
* * * * * *
131816983 TTCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C--ACCTTAATC
1 TCCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATC
* *
131817025 -CCCTAAGTAGTAGGGTAATAGGTTAAATTTGCAGATCTTATC
1 TCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
* * * * ** *
131817067 TCCCTAAGTAGTAGTGG-AGCAGATCAAAAACT-C-G-GCTTAATC
1 TCCCTAAGCAGTAG-GGTAACAGGT-TAAATTTGCAGATCTT-ATC
* *
131817109 -CCCTAAGCAGTAGGATAACAGG-----TTCGCAGATCTTATC
1 TCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
* * * ** **** ** *
131817146 TCCGTAAGCAGTAGTGG-AGCAGATCGACGACGACTCACCTTAATC
1 TCCCTAAGCAGTAG-GGTAACAGGTTAAATTTG-CAGATCTT-ATC
*
131817191 -CCCTAAGCAGTAGGGTAACAAGTTAAATTTGCAGATCTTATC
1 TCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
* * * * *
131817233 TCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C--ACCTTAAT-
1 TCCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATC
*
131817274 TCCCTAAGCAGTAGGGTAACAGGTTAAATTTCCAGATCTTATC
1 TCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
* * * * **
131817317 TCCCTAAGTAGTAGTGG-AGCAGATCGAAGGCTTGC---T-TTAATC
1 TCCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATC
*
131817359 -CCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
1 TCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
131817401 TCCCTAAGCA
1 TCCCTAAGCA
131817411 ATAGTGGAGC
Statistics
Matches: 303, Mismatches: 77, Indels: 97
0.64 0.16 0.20
Matches are distributed among these distances:
36 1 0.00
37 4 0.01
38 19 0.06
39 7 0.02
40 15 0.05
41 81 0.27
42 25 0.08
43 97 0.32
44 46 0.15
45 8 0.03
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (43 bp):
TCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATC
Found at i:131817271 original size:250 final size:248
Alignment explanation
Indices: 131816774--131817712 Score: 1136
Period size: 250 Copynumber: 3.8 Consensus size: 248
131816764 CAAAATTCAA
* * *
131816774 CACCTTAATCCCCTAACCAGTAGAGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTA
* ** * *
131816839 GTGGAGCAGATCGAAGACT-CGCCTTAATCCCTTAAGCAATAGGGTAACAGGTTAAATTAGCAGA
66 GTGGAGCAGATCGAAGACTCCG-CTTAATCCCCTAAGCGGTAGGATAACAGG----ATTTGCAGA
131816903 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA-A-A-TC-CC----T----TAAGCAGTAGGG
126 TCTTATCT-CCTAAGCAGTAGTGGAGCAGATCGAGAGACTCGCCTTAATCCCCTAAGCAGTAGGG
* *
131816956 TAACAGGTTAAATTTGCAGATCTTATCTTCCTAAGCAGTAGTGGAGCAGATCGAAGACT
190 TAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
* *
131817015 CACCTTAATCCCCTAAGTAGTAGGGTAATAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTA
1 CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTA
* * * * *
131817080 GTGGAGCAGATCAAAAACTCGGCTTAATCCCCTAAGCAGTAGGATAACAGG-TTCGCAGATCTTA
66 GTGGAGCAGATCGAAGACTCCGCTTAATCCCCTAAGCGGTAGGATAACAGGATTTGCAGATCTTA
*
131817144 TCTCCGTAAGCAGTAGTGGAGCAGATCGACGACGACTCACCTTAATCCCCTAAGCAGTAGGGTAA
131 TCTCC-TAAGCAGTAGTGGAGCAGATCGA-GA-GACTCGCCTTAATCCCCTAAGCAGTAGGGTAA
131817209 CAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
193 CAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
* *
131817265 CACCTTAATTCCCTAAGCAGTAGGGTAACAGGTTAAATTTCCAGATCTTATCTCCCTAAGTAGTA
1 CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTA
* * *
131817330 GTGGAGCAGATCGAAGGCT-TGCTTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGA
66 GTGGAGCAGATCGAAGACTCCGC-TTAATCCCCTAAGCGGTAGGATAACAGG----ATTTGCAGA
* * *
131817394 TCTTATCTCCCTAAGCAATAGTGGAGCAGATCGA-AGACTTGCCTTAATCCCCTAAGCAGTAAGG
126 TCTTATCT-CCTAAGCAGTAGTGGAGCAGATCGAGAGACTCGCCTTAATCCCCTAAGCAGTAGGG
** * *
131817458 T---AA--TAGGTTCGCAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGACGACGACT
190 TAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA--A-GACT
* * *
131817515 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTA
1 CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTA
* *
131817580 GTGGAGCAGATCGAAGAC-CCCCTTAATCCCCTAAGCGGTA-GAGTAACAGGTTAAATTTACAGA
66 GTGGAGCAGATCGAAGACTCCGCTTAATCCCCTAAGCGGTAGGA-TAACAGG----ATTTGCAGA
* *
131817643 TCTTATC-CCTAAGCAGTAGCGGAGCAGATCGAAGGAGA-TACGCCTTAACCCCCTAAGCAGTAG
126 TCTTATCTCCTAAGCAGTAGTGGAGCAGATCG-A-GAGACT-CGCCTTAATCCCCTAAGCAGTAG
131817706 GGTAACA
188 GGTAACA
131817713 GGTTGAAGAC
Statistics
Matches: 615, Mismatches: 48, Indels: 58
0.85 0.07 0.08
Matches are distributed among these distances:
235 2 0.00
236 38 0.06
238 1 0.00
240 1 0.00
241 105 0.17
242 3 0.00
246 1 0.00
247 64 0.10
248 2 0.00
249 50 0.08
250 280 0.46
252 27 0.04
253 2 0.00
255 37 0.06
256 2 0.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (248 bp):
CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTA
GTGGAGCAGATCGAAGACTCCGCTTAATCCCCTAAGCGGTAGGATAACAGGATTTGCAGATCTTA
TCTCCTAAGCAGTAGTGGAGCAGATCGAGAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAA
GTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
Found at i:131817468 original size:334 final size:333
Alignment explanation
Indices: 131816814--131817716 Score: 1352
Period size: 334 Copynumber: 2.7 Consensus size: 333
131816804 GGTTAAATTT
*
131816814 GCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA--A-GACTCGCCTTAATCCCTTAAGC
1 GCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGC
* *
131816876 AATAGGGTAACAGGTTAAATTAGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA-A-
66 AGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC
* *
131816939 TCCC-----T---TAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTTCCTAAGCAGTA
131 TCCCTTAATTCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTA
* * * *
131816996 GTGGAGCAGATCGAAGACTCACCTTAATCCCCTAAGTAGTAGGGTAATAGGTTAAATTTGCAGAT
196 GTGGAGCAGATCGAAGGCTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
* * *
131817061 CTTATCTCCCTAAGTAGTAGTGGAGCAGATCAAAAACTCGGCTTAATCCCCTAAGCAGTAGGATA
261 CTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAAACTCGCCTTAATCCCCTAAGCAGTAGGATA
131817126 ACAGGTTC
326 ACAGGTTC
* *
131817134 GCAGATCTTATCTCCGTAAGCAGTAGTGGAGCAGATCGACGACGACTCACCTTAATCCCCTAAGC
1 GCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGC
*
131817199 AGTAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC
66 AGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC
* *
131817264 TCACCTTAATTCCCTAAGCAGTAGGGTAACAGGTTAAATTTCCAGATCTTATCTCCCTAAGTAGT
131 TC-CCTTAATTCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGT
* * *
131817329 AGTGGAGCAGATCGAAGGCTTGCTTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGA
195 AGTGGAGCAGATCGAAGGCTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
* * *
131817394 TCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACTTGCCTTAATCCCCTAAGCAGTAAGG-
260 TCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAAACTCGCCTTAATCCCCTAAGCAGT-AGGA
*
131817458 TAATAGGTTC
324 TAACAGGTTC
*
131817468 GCAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGC
1 GCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGC
*
131817533 AGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC
66 AGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC
* * * *
131817598 CCCCTTAATCCCCTAAGCGGTAGAGTAACAGGTTAAATTTACAGATCTTA--TCCCTAAGCAGTA
131 TCCCTTAATTCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTA
* * *
131817661 GCGGAGCAGATCGAAGGAGATACGCCTTAACCCCCTAAGCAGTAGGGTAACAGGTT
196 GTGGAGCAGATCGAA-G-GCT-CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTT
131817717 GAAGACATAG
Statistics
Matches: 525, Mismatches: 40, Indels: 22
0.89 0.07 0.04
Matches are distributed among these distances:
320 38 0.07
322 1 0.00
323 79 0.15
324 1 0.00
325 2 0.00
326 2 0.00
331 27 0.05
332 1 0.00
333 46 0.09
334 325 0.62
335 3 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (333 bp):
GCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGC
AGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC
TCCCTTAATTCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGGCTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
CTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAAACTCGCCTTAATCCCCTAAGCAGTAGGATA
ACAGGTTC
Found at i:131818392 original size:19 final size:19
Alignment explanation
Indices: 131818368--131818465 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
131818358 AATCTTTAAG
131818368 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
131818387 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
131818406 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
131818423 GATATGCAATCTTAAATAT
1 GATATGCAATCTTAGATAT
131818442 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
131818463 GAT
1 GAT
131818466 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.66
21 8 0.11
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:131818398 original size:36 final size:35
Alignment explanation
Indices: 131818358--131818465 Score: 112
Period size: 36 Copynumber: 2.9 Consensus size: 35
131818348 ATGGAAATAT
131818358 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
131818394 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
131818430 AATCTTAAATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
131818466 CTTGTAATCT
Statistics
Matches: 61, Mismatches: 1, Indels: 16
0.78 0.01 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 28 0.46
37 1 0.02
38 7 0.11
40 10 0.16
41 6 0.10
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:131820435 original size:11 final size:10
Alignment explanation
Indices: 131820352--131820649 Score: 67
Period size: 10 Copynumber: 31.1 Consensus size: 10
131820342 TAATATAGGG
131820352 AATAATATAT
1 AATAATATAT
131820362 AATAATATAT
1 AATAATATAT
* *
131820372 GAT-ATGTAAT
1 AATAATAT-AT
131820382 AA-AATATAT
1 AATAATATAT
*
131820391 AAATAAAATAT
1 -AATAATATAT
131820402 AATGAA-ATAT
1 AAT-AATATAT
131820412 AATAATATGAT
1 AATAATAT-AT
*
131820423 AACTATTATAT
1 AA-TAATATAT
**
131820434 AAATAA-GGAT
1 -AATAATATAT
131820444 AAT-ATATAT
1 AATAATATAT
* * *
131820453 ACTATTATTT
1 AATAATATAT
*
131820463 AATAA-A-AA
1 AATAATATAT
*
131820471 AATAATATTT
1 AATAATATAT
* * *
131820481 TACAAAAT-T
1 AATAATATAT
131820490 AATGAATA-AT
1 AAT-AATATAT
131820500 AA-AATA-AT
1 AATAATATAT
*
131820508 ACATAATTTAT
1 A-ATAATATAT
131820519 AATGAA-ATA-
1 AAT-AATATAT
131820528 AA-AATA-A-
1 AATAATATAT
*
131820535 AATGCAAGGA-AT
1 AAT--AA-TATAT
131820547 AAT-ATATAT
1 AATAATATAT
*
131820556 AATAAAATAT
1 AATAATATAT
*
131820566 -ATAATGTAT
1 AATAATATAT
131820575 AATAA-A-AT
1 AATAATATAT
* *
131820583 --TTATAAAT
1 AATAATATAT
*
131820591 AA-AATGTAT
1 AATAATATAT
*
131820600 AATAATA-AA
1 AATAATATAT
131820609 AATAATATAAT
1 AATAATAT-AT
131820620 GAATAATATAT
1 -AATAATATAT
131820631 GAATAA-A-A-
1 -AATAATATAT
131820639 AATAATATAT
1 AATAATATAT
131820649 A
1 A
131820650 CTATTTTATA
Statistics
Matches: 208, Mismatches: 41, Indels: 78
0.64 0.13 0.24
Matches are distributed among these distances:
6 2 0.01
7 11 0.05
8 20 0.10
9 50 0.24
10 75 0.36
11 32 0.15
12 18 0.09
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (10 bp):
AATAATATAT
Found at i:131820593 original size:13 final size:13
Alignment explanation
Indices: 131820568--131820601 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
131820558 TAAAATATAT
131820568 AATGTAT-AATAA
1 AATGTATAAATAA
*
131820580 AATTTATAAATAA
1 AATGTATAAATAA
131820593 AATGTATAA
1 AATGTATAA
131820602 TAATAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (13 bp):
AATGTATAAATAA
Found at i:131820613 original size:25 final size:24
Alignment explanation
Indices: 131820560--131820627 Score: 59
Period size: 25 Copynumber: 2.8 Consensus size: 24
131820550 ATATATAATA
*
131820560 AAAT-ATATAATGTATAATAAAAT
1 AAATAATAAAATGTATAATAAAAT
**
131820583 TTATAAATAAAATGTATAATAATAA-
1 AAAT-AATAAAATGTATAATAA-AAT
* *
131820608 AAATAATATAATGAATAATA
1 AAATAATAAAATGTATAATA
131820628 TATGAATAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
23 2 0.06
24 14 0.40
25 17 0.49
26 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (24 bp):
AAATAATAAAATGTATAATAAAAT
Found at i:131823967 original size:17 final size:17
Alignment explanation
Indices: 131823947--131824045 Score: 135
Period size: 17 Copynumber: 5.6 Consensus size: 17
131823937 CAATGATATG
131823947 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
131823964 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
131823982 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
131823999 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
*
131824017 TAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
131824036 CAATCTTAGA
1 CAATCTTAGA
131824046 AGATATGATT
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
17 31 0.43
18 30 0.42
19 10 0.14
20 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.37
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:131823985 original size:35 final size:35
Alignment explanation
Indices: 131823939--131824045 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
131823929 ATAATCTTCA
131823939 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
131823975 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
131824010 ATGATTGTAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
131824046 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 50 0.74
36 5 0.07
37 13 0.19
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:131823987 original size:18 final size:18
Alignment explanation
Indices: 131823947--131824045 Score: 148
Period size: 18 Copynumber: 5.6 Consensus size: 18
131823937 CAATGATATG
131823947 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
131823964 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
131823982 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
131823999 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
*
131824017 TAATCTTAGATATGATATA
1 CAATCTTAGATATGAT-TA
131824036 CAATCTTAGA
1 CAATCTTAGA
131824046 AGATATGATT
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
17 31 0.42
18 32 0.44
19 10 0.14
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.37
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:131824071 original size:22 final size:20
Alignment explanation
Indices: 131823965--131824081 Score: 70
Period size: 18 Copynumber: 6.0 Consensus size: 20
131823955 GATATGATAC
*
131823965 AATCTT-AGATATGA-TTGC
1 AATCTTGAGATATGATTTGT
**
131823983 AATCTT-AGATATGA--TAC
1 AATCTTGAGATATGATTTGT
131824000 AATCTT-AGATATGA-TTGT
1 AATCTTGAGATATGATTTGT
* **
131824018 AATCTT-AGATATGATATAC
1 AATCTTGAGATATGATTTGT
131824037 AATCTTAGAAGATATGATTTTGT
1 AATCTT-G-AGATATGA-TTTGT
* *
131824060 AATCTTGGAGATTTAATTTGT
1 AATCTT-GAGATATGATTTGT
131824081 A
1 A
131824082 GATATCCTTT
Statistics
Matches: 81, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
17 16 0.20
18 29 0.36
19 7 0.09
21 6 0.07
22 14 0.17
23 9 0.11
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (20 bp):
AATCTTGAGATATGATTTGT
Found at i:131824365 original size:12 final size:11
Alignment explanation
Indices: 131824350--131824383 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
131824340 TATTTTTAAT
131824350 TTATTATATATA
1 TTATT-TATATA
131824362 TTATTTATTATA
1 TTATTTA-TATA
131824374 TTATTTATAT
1 TTATTTATAT
131824384 TTTCAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTTATATA
Found at i:131824375 original size:21 final size:21
Alignment explanation
Indices: 131824351--131824459 Score: 70
Period size: 21 Copynumber: 5.3 Consensus size: 21
131824341 ATTTTTAATT
131824351 TATTATATATATTATTTATTA
1 TATTATATATATTATTTATTA
* *
131824372 TATTATTTATATT-TTCA--A
1 TATTATATATATTATTTATTA
* *
131824390 AATT-TATAAATTA-TTATTA
1 TATTATATATATTATTTATTA
* *
131824409 TA-TATTATATTTTAACTTATATA
1 TATTA-TATATATT-ATTTAT-TA
*
131824432 TCTTATATAT-TTATTTATTTA
1 TATTATATATATTATTTA-TTA
131824453 TATTATA
1 TATTATA
131824460 CATTATTTTA
Statistics
Matches: 66, Mismatches: 12, Indels: 20
0.67 0.12 0.20
Matches are distributed among these distances:
17 8 0.12
18 5 0.08
19 2 0.03
20 9 0.14
21 25 0.38
22 7 0.11
23 8 0.12
24 2 0.03
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (21 bp):
TATTATATATATTATTTATTA
Found at i:131824381 original size:16 final size:16
Alignment explanation
Indices: 131824348--131824378 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
131824338 CTTATTTTTA
131824348 ATTTATTATATATATT
1 ATTTATTATATATATT
131824364 ATTTATTATAT-TATT
1 ATTTATTATATATATT
131824379 TATATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATTATATATATT
Found at i:131824414 original size:7 final size:7
Alignment explanation
Indices: 131824356--131824465 Score: 52
Period size: 7 Copynumber: 15.4 Consensus size: 7
131824346 TAATTTATTA
131824356 TATATAT
1 TATATAT
*
131824363 TATTTAT
1 TATATAT
131824370 TATATTAT
1 TATA-TAT
131824378 T-TATAT
1 TATATAT
* *
131824384 TTTCAAAATT
1 TAT--ATA-T
*
131824394 TATAAAT
1 TATATAT
131824401 TAT-TAT
1 TATATAT
131824407 TATATAT
1 TATATAT
131824414 TATAT-T
1 TATATAT
131824420 T-TA-ACT
1 TATATA-T
131824426 TATATATCT
1 TATATA--T
131824435 TATATATT
1 TATATA-T
*
131824443 TATTTAT
1 TATATAT
131824450 T-TATAT
1 TATATAT
*
131824456 TATACAT
1 TATATAT
131824463 TAT
1 TAT
131824466 TTTAAAAACT
Statistics
Matches: 82, Mismatches: 9, Indels: 24
0.71 0.08 0.21
Matches are distributed among these distances:
5 2 0.02
6 18 0.22
7 35 0.43
8 14 0.17
9 10 0.12
10 3 0.04
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (7 bp):
TATATAT
Found at i:131824420 original size:26 final size:26
Alignment explanation
Indices: 131824391--131824575 Score: 81
Period size: 26 Copynumber: 7.2 Consensus size: 26
131824381 TATTTTCAAA
131824391 ATTTATAAATTATTATTATATATTAT
1 ATTTATAAATTATTATTATATATTAT
*
131824417 ATTT-TAACTTATATATCTTATATATT-T
1 ATTTATAAATTAT-TA--TTATATATTAT
*
131824444 ATTTAT---TTA-TATTATACATTAT
1 ATTTATAAATTATTATTATATATTAT
*
131824466 -TTTAAAAACTTACATT-TT-TATATTAT
1 ATTTATAAA-TT--ATTATTATATATTAT
*
131824492 ATATATAAATTATTTCATT-TATTATTAT
1 ATTTATAAATTA-TT-ATTATA-TATTAT
* * * *
131824520 TTTTATATACTATCA-TATATTATCTAT
1 ATTTATAAATTATTATTATA-TAT-TAT
* *
131824547 -TTTA-AAATTCACTATTAAATATTAT
1 ATTTATAAATT-ATTATTATATATTAT
131824572 ATTT
1 ATTT
131824576 TTATGTATTA
Statistics
Matches: 121, Mismatches: 16, Indels: 44
0.67 0.09 0.24
Matches are distributed among these distances:
21 12 0.10
22 1 0.01
23 2 0.02
24 1 0.01
25 21 0.17
26 34 0.28
27 25 0.21
28 25 0.21
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (26 bp):
ATTTATAAATTATTATTATATATTAT
Found at i:131824847 original size:3 final size:3
Alignment explanation
Indices: 131824839--131824885 Score: 85
Period size: 3 Copynumber: 15.3 Consensus size: 3
131824829 TATGTTACTA
131824839 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
131824885 T
1 T
131824886 GTATTTGTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:131830342 original size:9 final size:9
Alignment explanation
Indices: 131830328--131830379 Score: 68
Period size: 9 Copynumber: 5.6 Consensus size: 9
131830318 TTCTATTTAA
131830328 AAAAAAAAG
1 AAAAAAAAG
131830337 AAAAAAAAG
1 AAAAAAAAG
*
131830346 AAAAAAAGAA
1 AAAAAAA-AG
131830356 AAAAATAAAG
1 AAAAA-AAAG
*
131830366 AGAAAAAAG
1 AAAAAAAAG
131830375 AAAAA
1 AAAAA
131830380 GATGGAGAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
9 24 0.65
10 11 0.30
11 2 0.05
ACGTcount: A:0.87, C:0.00, G:0.12, T:0.02
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:131830352 original size:21 final size:22
Alignment explanation
Indices: 131830326--131830381 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
131830316 ACTTCTATTT
131830326 AAAAAAAAAAGAAA-AAAAAGA
1 AAAAAAAAAAGAAATAAAAAGA
*
131830347 AAAAAAGAAAA-AAATAAAGAGA
1 AAAAAA-AAAAGAAATAAAAAGA
131830369 AAAAAGAAAAAGA
1 AAAAA-AAAAAGA
131830382 TGGAGAGGCC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 9 0.30
22 19 0.63
23 2 0.07
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (22 bp):
AAAAAAAAAAGAAATAAAAAGA
Found at i:131830379 original size:8 final size:8
Alignment explanation
Indices: 131830329--131830360 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
131830319 TCTATTTAAA
131830329 AAAAAAAG
1 AAAAAAAG
131830337 AAAAAAAAG
1 -AAAAAAAG
131830346 AAAAAAAG
1 AAAAAAAG
131830354 AAAAAAA
1 AAAAAAA
131830361 TAAAGAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 15 0.65
9 8 0.35
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:131830388 original size:21 final size:21
Alignment explanation
Indices: 131830326--131830379 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
131830316 ACTTCTATTT
* *
131830326 AAAAAAAAAAGAAAAAAAAGA-
1 AAAAAAGAAA-AAAATAAAGAG
131830347 AAAAAAGAAAAAAATAAAGAG
1 AAAAAAGAAAAAAATAAAGAG
131830368 AAAAAAGAAAAA
1 AAAAAAGAAAAA
131830380 GATGGAGAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 9 0.30
21 21 0.70
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.02
Consensus pattern (21 bp):
AAAAAAGAAAAAAATAAAGAG
Found at i:131831396 original size:44 final size:44
Alignment explanation
Indices: 131831255--131831434 Score: 152
Period size: 44 Copynumber: 4.1 Consensus size: 44
131831245 CAAATAAACA
* * *
131831255 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGC
* * * * * * * ** **
131831299 AGATCTGACATTCCTGTGCTCTCT-GCGAAGTAGATTGAAGATTTC
1 AGATTTGGCATCCCTGTG-TTTATAGGGAA-CAGATCAAAGATAGC
*
131831344 AGCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTAAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCAAAGATAGC
*
131831387 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGC
131831431 AGAT
1 AGAT
131831435 CTAACCTTCA
Statistics
Matches: 105, Mismatches: 23, Indels: 16
0.73 0.16 0.11
Matches are distributed among these distances:
42 2 0.02
43 14 0.13
44 72 0.69
45 16 0.15
46 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGC
Found at i:131831742 original size:119 final size:119
Alignment explanation
Indices: 131831426--131832015 Score: 981
Period size: 119 Copynumber: 5.0 Consensus size: 119
131831416 CAGATCGAAG
131831426 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
131831491 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACATTCTCAAAG
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
131831545 ATAGCAGATCTAA-CTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
131831609 TTACAAGGAACAAATCAAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
*
131831663 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
131831728 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * * *
131831782 ATAACAGATCTAACCTTCAAATGTTTATACTGAAGTAGATCCAA-A--ATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * *
131831844 TTACAAGAAACAAATCGAGGACATAACAGATTTGACTCTCAGATGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * * *
131831898 ATAGTAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * * *
131831963 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
131832016 CAGACTCAAG
Statistics
Matches: 443, Mismatches: 24, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
116 108 0.24
117 1 0.00
118 116 0.26
119 218 0.49
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:131831969 original size:235 final size:236
Alignment explanation
Indices: 131831426--131832015 Score: 977
Period size: 235 Copynumber: 2.5 Consensus size: 236
131831416 CAGATCGAAG
131831426 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
131831491 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACATTCTCAAAGATAGCAGATCT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAACAGATCT
* *
131831556 AACTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACA
131 AACTTCAAATGTTTATACTGAAGCAGATCCAAGA-GATTTGGCATTCTTGTGTTTACAAGAAACA
*
131831621 AATCAAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
195 AATCAAGGACATAACAGATTTGACTCTCAGACGTTCTCAAAT
*
131831663 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
131831728 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAACAGATCT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAACAGATCT
* *
131831793 AACCTTCAAATGTTTATACTGAAGTAGATCCAA-A-ATTTGGTATTCTTGTGTTTACAAGAAACA
131 AA-CTTCAAATGTTTATACTGAAGCAGATCCAAGAGATTTGGCATTCTTGTGTTTACAAGAAACA
* *
131831856 AATCGAGGACATAACAGATTTGACTCTCAGATGTTCTCAAAT
195 AATCAAGGACATAACAGATTTGACTCTCAGACGTTCTCAAAT
* * * *
131831898 ATAGTAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * * *
131831963 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
131832016 CAGACTCAAG
Statistics
Matches: 332, Mismatches: 20, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
235 175 0.53
237 129 0.39
238 28 0.08
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (236 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAACAGATCT
AACTTCAAATGTTTATACTGAAGCAGATCCAAGAGATTTGGCATTCTTGTGTTTACAAGAAACAA
ATCAAGGACATAACAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:131832078 original size:83 final size:83
Alignment explanation
Indices: 131831939--131832269 Score: 608
Period size: 83 Copynumber: 4.0 Consensus size: 83
131831929 GAAGCAGATC
131831939 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
131832004 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
131832022 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
131832087 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* *
131832105 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
131832170 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
131832188 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
131832253 AAATGTTCTCAAACAGA
65 AAATGTTCTCAAACAGA
131832270 TGATTTGACA
Statistics
Matches: 242, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
83 175 0.72
84 67 0.28
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:131832693 original size:17 final size:17
Alignment explanation
Indices: 131832673--131832771 Score: 135
Period size: 17 Copynumber: 5.6 Consensus size: 17
131832663 CAATGATATG
131832673 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
131832690 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
131832708 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
131832725 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
*
131832743 TAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
131832762 CAATCTTAGA
1 CAATCTTAGA
131832772 AGATATGATT
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
17 31 0.43
18 30 0.42
19 10 0.14
20 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.37
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:131832711 original size:35 final size:35
Alignment explanation
Indices: 131832665--131832771 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
131832655 ATAATCTTCA
131832665 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
131832701 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
131832736 ATGATTGTAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
131832772 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 50 0.74
36 5 0.07
37 13 0.19
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:131832713 original size:18 final size:18
Alignment explanation
Indices: 131832673--131832771 Score: 148
Period size: 18 Copynumber: 5.6 Consensus size: 18
131832663 CAATGATATG
131832673 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
131832690 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
131832708 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
131832725 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
*
131832743 TAATCTTAGATATGATATA
1 CAATCTTAGATATGAT-TA
131832762 CAATCTTAGA
1 CAATCTTAGA
131832772 AGATATGATT
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
17 31 0.42
18 32 0.44
19 10 0.14
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.37
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:131832797 original size:22 final size:20
Alignment explanation
Indices: 131832691--131832807 Score: 70
Period size: 18 Copynumber: 6.0 Consensus size: 20
131832681 GATATGATAC
*
131832691 AATCTT-AGATATGA-TTGC
1 AATCTTGAGATATGATTTGT
**
131832709 AATCTT-AGATATGA--TAC
1 AATCTTGAGATATGATTTGT
131832726 AATCTT-AGATATGA-TTGT
1 AATCTTGAGATATGATTTGT
* **
131832744 AATCTT-AGATATGATATAC
1 AATCTTGAGATATGATTTGT
131832763 AATCTTAGAAGATATGATTTTGT
1 AATCTT-G-AGATATGA-TTTGT
* *
131832786 AATCTTGGAGATTTAATTTGT
1 AATCTT-GAGATATGATTTGT
131832807 A
1 A
131832808 GATATCCTTT
Statistics
Matches: 81, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
17 16 0.20
18 29 0.36
19 7 0.09
21 6 0.07
22 14 0.17
23 9 0.11
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (20 bp):
AATCTTGAGATATGATTTGT
Found at i:131833092 original size:9 final size:9
Alignment explanation
Indices: 131833078--131833180 Score: 51
Period size: 8 Copynumber: 11.9 Consensus size: 9
131833068 ATTTTTAATT
131833078 TATTATATA
1 TATTATATA
131833087 TATTAT-T-
1 TATTATATA
131833094 TATTATAT-
1 TATTATATA
131833102 TATT-TATA
1 TATTATATA
* *
131833110 TTTTA-AAA
1 TATTATATA
* *
131833118 T-TTGTAAA
1 TATTATATA
131833126 TTATTATTATA
1 -TATTA-TATA
*
131833137 TATTATATT
1 TATTATATA
131833146 TAACTTATATA
1 T-A-TTATATA
*
131833157 TCTTATATA
1 TATTATATA
*
131833166 T-TTATTTA
1 TATTATATA
131833174 T-TTATAT
1 TATTATAT
131833181 TATACATTAT
Statistics
Matches: 75, Mismatches: 10, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
7 11 0.15
8 27 0.36
9 19 0.25
10 8 0.11
11 10 0.13
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.60
Consensus pattern (9 bp):
TATTATATA
Found at i:131833092 original size:12 final size:11
Alignment explanation
Indices: 131833077--131833110 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
131833067 TATTTTTAAT
131833077 TTATTATATATA
1 TTATT-TATATA
131833089 TTATTTATTATA
1 TTATTTA-TATA
131833101 TTATTTATAT
1 TTATTTATAT
131833111 TTTAAAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTTATATA
Found at i:131833573 original size:3 final size:3
Alignment explanation
Indices: 131833565--131833610 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
131833555 TATGTTACTA
131833565 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
131833611 GTATTTGTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:131839349 original size:18 final size:18
Alignment explanation
Indices: 131839287--131839350 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
131839277 GCTCTGGTGA
*
131839287 GCTTCAGTTAGCCTTCGG
1 GCTTCAGTTAGACTTCGG
* * *
131839305 GCTTCCGTTTAGCACTTATGT
1 GCTTCAG-TTAG-ACTT-CGG
*
131839326 GCTTCAGTTAGTCTTCGG
1 GCTTCAGTTAGACTTCGG
131839344 GCTTCAG
1 GCTTCAG
131839351 ATCACAATGT
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
18 14 0.40
19 7 0.20
20 7 0.20
21 7 0.20
ACGTcount: A:0.12, C:0.25, G:0.25, T:0.38
Consensus pattern (18 bp):
GCTTCAGTTAGACTTCGG
Found at i:131840888 original size:20 final size:20
Alignment explanation
Indices: 131840863--131840905 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
131840853 ATGGGCAAAT
131840863 TATGAGACCAACATTTAATA
1 TATGAGACCAACATTTAATA
131840883 TATGAGACCAACATTTAATA
1 TATGAGACCAACATTTAATA
131840903 TAT
1 TAT
131840906 TGACATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (20 bp):
TATGAGACCAACATTTAATA
Found at i:131841371 original size:8 final size:8
Alignment explanation
Indices: 131841358--131841538 Score: 89
Period size: 8 Copynumber: 23.1 Consensus size: 8
131841348 TAAAATGTAA
131841358 AATAATAT
1 AATAATAT
131841366 AATAATAT
1 AATAATAT
131841374 -ATAA-AT
1 AATAATAT
131841380 ATATAA-AT
1 A-ATAATAT
* *
131841388 ATTATGTGAT
1 AATA-AT-AT
131841398 AA-AA-AT
1 AATAATAT
131841404 -ATAATAT
1 AATAATAT
131841411 AATAA-AT
1 AATAATAT
*
131841418 AATAA-GT
1 AATAATAT
*
131841425 AATGATAT
1 AATAATAT
** *
131841433 -ATGTTAA
1 AATAATAT
131841440 AAT-ATAT
1 AATAATAT
*
131841447 ATTAATAT
1 AATAATAT
*
131841455 GATAATAT
1 AATAATAT
*
131841463 AAAAATAT
1 AATAATAT
131841471 GAAGTAATAT
1 -AA-TAATAT
*
131841481 AATATTAT
1 AATAATAT
131841489 AA-AATAT
1 AATAATAT
131841496 AAATAA-AT
1 -AATAATAT
131841504 AATAATAT
1 AATAATAT
*
131841512 AAAATATAT
1 AATA-ATAT
*
131841521 AATACATAA
1 AATA-ATAT
131841530 AATAATAT
1 AATAATAT
131841538 A
1 A
131841539 TATACAATTT
Statistics
Matches: 132, Mismatches: 24, Indels: 34
0.69 0.13 0.18
Matches are distributed among these distances:
5 1 0.01
6 6 0.05
7 38 0.29
8 58 0.44
9 21 0.16
10 8 0.06
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (8 bp):
AATAATAT
Found at i:131841389 original size:6 final size:7
Alignment explanation
Indices: 131841308--131841540 Score: 81
Period size: 7 Copynumber: 34.1 Consensus size: 7
131841298 ACATGAAAAA
131841308 AATATAT
1 AATATAT
*
131841315 AATAGAT
1 AATATAT
131841322 AATA-AT
1 AATATAT
131841328 AATATGA-
1 AATAT-AT
131841335 AATAATAT
1 AAT-ATAT
* *
131841343 ATTGT-T
1 AATATAT
* *
131841349 AAAATGT
1 AATATAT
131841356 AA-A-AT
1 AATATAT
131841361 AATATAAT
1 AATAT-AT
131841369 AATATAT
1 AATATAT
131841376 AAATATAT
1 -AATATAT
131841384 AA-ATAT
1 AATATAT
* *
131841390 TATGTGAT
1 AATAT-AT
*
131841398 AA-AAAT
1 AATATAT
131841404 -ATAATAT
1 AAT-ATAT
*
131841411 AATAAAT
1 AATATAT
131841418 AATA-AGT
1 AATATA-T
131841425 AATGATAT
1 AAT-ATAT
*
131841433 -ATGT-T
1 AATATAT
*
131841438 AAAATAT
1 AATATAT
131841445 -ATAT-T
1 AATATAT
131841450 AATATGAT
1 AATAT-AT
131841458 AATATA-
1 AATATAT
*
131841464 AAAATAT
1 AATATAT
131841471 GAAGTAATAT
1 -AA-T-ATAT
131841481 AATATTAT
1 AATA-TAT
*
131841489 AAAATAT
1 AATATAT
131841496 AA-ATA-
1 AATATAT
131841501 AATA-AT
1 AATATAT
*
131841507 AATATAA
1 AATATAT
131841514 AATATAT
1 AATATAT
*
131841521 AATACAT
1 AATATAT
131841528 AA-A-AT
1 AATATAT
131841533 AATATAT
1 AATATAT
131841540 A
1 A
131841541 TACAATTTAA
Statistics
Matches: 170, Mismatches: 24, Indels: 64
0.66 0.09 0.25
Matches are distributed among these distances:
5 13 0.08
6 44 0.26
7 65 0.38
8 41 0.24
9 3 0.02
10 4 0.02
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (7 bp):
AATATAT
Found at i:131841476 original size:51 final size:48
Alignment explanation
Indices: 131841400--131841522 Score: 135
Period size: 51 Copynumber: 2.5 Consensus size: 48
131841390 TATGTGATAA
*
131841400 AAAT-ATAATATAATAAATAATAAGTAATGAT-ATATGT-TAAAATATATATT
1 AAATAATAATATAA-AAAT-ATAAGTAAT-ATAATAT-TATAAAATATA-AAT
*
131841450 AATATGATAATATAAAAATATGAAGTAATATAATATTATAAAATATAAAT
1 AA-ATAATAATATAAAAATAT-AAGTAATATAATATTATAAAATATAAAT
131841500 AAATAATAATATAAAATATATAA
1 AAATAATAATATAAAA-ATATAA
131841523 TACATAAAAT
Statistics
Matches: 65, Mismatches: 2, Indels: 13
0.81 0.03 0.16
Matches are distributed among these distances:
49 15 0.23
50 15 0.23
51 26 0.40
52 9 0.14
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (48 bp):
AAATAATAATATAAAAATATAAGTAATATAATATTATAAAATATAAAT
Found at i:131841508 original size:89 final size:89
Alignment explanation
Indices: 131841306--131841510 Score: 213
Period size: 89 Copynumber: 2.3 Consensus size: 89
131841296 ATACATGAAA
* *
131841306 AAAATATATAATAGATAATAATAATATGAAATAATATATTGTTAAAATGTAAAATAATATAATAA
1 AAAA-ATATAAT--ATAATAATAATAAGAAATAATATATTGTTAAAATATAAAATAATATAATAA
* *
131841371 TATATAAATATATAAATATTATGTGAT
63 TATAAAAATATATAAATAATATGTGAT
* * * * *
131841398 AAAAATATAATATAATAAATAATAAGTAATGATATA-TGTTAAAATATATATTAATATGATAATA
1 AAAAATATAATATAAT-AATAATAAGAAATAATATATTGTTAAAATATAAAATAATATAATAATA
131841462 TAAAAATATGAAGTAATATAATAT-T-AT
65 TAAAAATAT--A-TAA-ATAATATGTGAT
131841489 -AAAATATAA-ATAAATAATAATA
1 AAAAATATAATAT-AATAATAATA
131841511 TAAAATATAT
Statistics
Matches: 98, Mismatches: 9, Indels: 15
0.80 0.07 0.12
Matches are distributed among these distances:
89 46 0.47
90 28 0.29
91 10 0.10
92 8 0.08
93 6 0.06
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.36
Consensus pattern (89 bp):
AAAAATATAATATAATAATAATAAGAAATAATATATTGTTAAAATATAAAATAATATAATAATAT
AAAAATATATAAATAATATGTGAT
Found at i:131841529 original size:21 final size:20
Alignment explanation
Indices: 131841308--131841542 Score: 70
Period size: 23 Copynumber: 10.8 Consensus size: 20
131841298 ACATGAAAAA
* *
131841308 AATATATAATAGATAATAAT
1 AATATAAAATATATAATAAT
**
131841328 AATATGAAATAATATATTGTTAA-
1 AATAT--AA-AATATA-TAATAAT
*
131841351 AATGTAAAATA-AT-ATAAT
1 AATATAAAATATATAATAAT
*
131841369 AATATATAAATATATAAATATT
1 AATATA-AAATATAT-AATAAT
*
131841391 ATGTGATAAAA-ATATAAT-AT
1 A-AT-ATAAAATATATAATAAT
*
131841411 AATA-AATAATA-AGTAATGAT
1 AATATAA-AATATA-TAATAAT
*
131841431 ATATGTTAAAATATATATTAATATGAT
1 A-AT-AT-AAA-ATATA-TAATA--AT
131841458 AATATAAAAATATGAAGTAATATAAT
1 AATAT-AAAATAT--A-T-A-ATAAT
*
131841484 ATTATAAAATATAAATAAATAAT
1 AATATAAAATAT--AT-AATAAT
131841507 AATATAAAATATATAATACAT
1 AATATAAAATATATAATA-AT
* *
131841528 AAAATAATATATATA
1 AATATAAAATATATA
131841543 CAATTTAAAA
Statistics
Matches: 166, Mismatches: 21, Indels: 55
0.69 0.09 0.23
Matches are distributed among these distances:
17 5 0.03
18 10 0.06
19 12 0.07
20 20 0.12
21 24 0.14
22 10 0.06
23 30 0.18
24 19 0.11
25 19 0.11
26 10 0.06
27 4 0.02
28 3 0.02
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (20 bp):
AATATAAAATATATAATAAT
Found at i:131843875 original size:21 final size:21
Alignment explanation
Indices: 131843850--131843918 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
131843840 TAGCCTTCGG
* *
131843850 GCTTCTGTTTAGCATTTATGT
1 GCTTCAGTTTAGCACTTATGT
* *
131843871 GCTTCAG-TTAGC-CTT-CGG
1 GCTTCAGTTTAGCACTTATGT
*
131843889 GCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTTAGCACTTATGT
131843910 GCTTCAGTT
1 GCTTCAGTT
131843919 AGATTTCGGG
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
18 7 0.19
19 7 0.19
20 8 0.22
21 15 0.41
ACGTcount: A:0.13, C:0.22, G:0.22, T:0.43
Consensus pattern (21 bp):
GCTTCAGTTTAGCACTTATGT
Found at i:131843928 original size:39 final size:39
Alignment explanation
Indices: 131843832--131843920 Score: 160
Period size: 39 Copynumber: 2.3 Consensus size: 39
131843822 GCTCTGATGA
* *
131843832 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCATTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
131843871 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
131843910 GCTTCAGTTAG
1 GCTTCAGTTAG
131843921 ATTTCGGGTT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.13, C:0.22, G:0.24, T:0.40
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:131853846 original size:206 final size:206
Alignment explanation
Indices: 131853492--131854041 Score: 915
Period size: 206 Copynumber: 2.7 Consensus size: 206
131853482 TGCTTCTTCA
*
131853492 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGCGAA
1 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGAA
* * * *
131853557 AACCAAATCAGCTATGTCTTCAATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATC
66 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
* *
131853622 TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCTATCGAATATGGAGAC
131 TGCTTCAGTATAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATCGAATATGGAGAC
131853687 GCCAAACTTTG
196 GCCAAACTTTG
* *
131853698 ATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACGTGAA
1 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGAA
* * *
131853763 AGCTAAATCAACTATGAT-TTCGATTTGTTCCTTGTACA-CACAAGGATGCCAAATCATCTTGGA
66 AGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTA-AGCACAAGGATGCCAAACCATCTTGGA
* *
131853826 TCTGTTTCAGTATAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAG
129 TCTGCTTCAGTATAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATCGAATATGGAG
131853891 ACGCCAAACTTTG
194 ACGCCAAACTTTG
*
131853904 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAA
1 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGAA
*
131853969 AGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
66 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
131854034 TTGCTTCA
131 -TGCTTCA
131854042 CCCAGATCTG
Statistics
Matches: 317, Mismatches: 22, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
205 2 0.01
206 307 0.97
207 8 0.03
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (206 bp):
ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGAA
AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
TGCTTCAGTATAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATCGAATATGGAGAC
GCCAAACTTTG
Found at i:131865595 original size:16 final size:17
Alignment explanation
Indices: 131865574--131865606 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
131865564 CATGAATATC
*
131865574 ATACAT-TAACTAACAT
1 ATACATATAACAAACAT
131865590 ATACATATAACAAACAT
1 ATACATATAACAAACAT
131865607 GGCAAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.27
Consensus pattern (17 bp):
ATACATATAACAAACAT
Found at i:131866052 original size:21 final size:22
Alignment explanation
Indices: 131866019--131866062 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
131866009 ATAAGATAAT
*
131866019 AAACATATTTAA-TAATACATGA
1 AAACATATGTAATTAATA-ATGA
131866041 AAACATA-GTAATTAATAATGA
1 AAACATATGTAATTAATAATGA
131866062 A
1 A
131866063 TTTTGAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (22 bp):
AAACATATGTAATTAATAATGA
Found at i:131866281 original size:8 final size:8
Alignment explanation
Indices: 131866268--131866448 Score: 69
Period size: 8 Copynumber: 23.1 Consensus size: 8
131866258 TAAAATGTAA
131866268 AATAATAT
1 AATAATAT
131866276 AATAATAT
1 AATAATAT
*
131866284 AAAAATAT
1 AATAATAT
131866292 -ATAA-AT
1 AATAATAT
* *
131866298 -ATTATGT
1 AATAATAT
*
131866305 GATAA-AT
1 AATAATAT
131866312 ATATAATAT
1 A-ATAATAT
131866321 AATAA-AT
1 AATAATAT
* *
131866328 AAGAA-GT
1 AATAATAT
*
131866335 AATTATAT
1 AATAATAT
** *
131866343 -ATGTTAA
1 AATAATAT
131866350 AAT-ATAT
1 AATAATAT
*
131866357 ATTAATAT
1 AATAATAT
* *
131866365 GATAATAG
1 AATAATAT
*
131866373 AAAAATAT
1 AATAATAT
131866381 GAAGTAATAT
1 -AA-TAATAT
*
131866391 AGT-ATAAT
1 AATAAT-AT
131866399 AA-AATAT
1 AATAATAT
131866406 AAATAA-AT
1 -AATAATAT
131866414 AATAATAT
1 AATAATAT
*
131866422 AAAATATAT
1 AATA-ATAT
*
131866431 AATACATAA
1 AATA-ATAT
131866440 AATAATAT
1 AATAATAT
131866448 A
1 A
131866449 TATACAATTT
Statistics
Matches: 126, Mismatches: 32, Indels: 30
0.67 0.17 0.16
Matches are distributed among these distances:
6 5 0.04
7 32 0.25
8 62 0.49
9 22 0.17
10 5 0.04
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.34
Consensus pattern (8 bp):
AATAATAT
Found at i:131866364 original size:51 final size:50
Alignment explanation
Indices: 131866306--131866425 Score: 145
Period size: 51 Copynumber: 2.4 Consensus size: 50
131866296 ATATTATGTG
** *
131866306 ATAAATATATAATATAATAAATAAGAAGTAATTATA-TATGTTAAAATATAT
1 ATAAATATATAATATAA-AAATAAGAAGTAA-TATAGTATAATAAAATATAA
* * *
131866357 ATTAATATGATAATAGAAAAATATGAAGTAATATAGTATAATAAAATATAA
1 ATAAATAT-ATAATATAAAAATAAGAAGTAATATAGTATAATAAAATATAA
131866408 ATAAATA-ATAATATAAAA
1 ATAAATATATAATATAAAA
131866426 TATATAATAC
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
49 10 0.17
50 4 0.07
51 37 0.63
52 8 0.14
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (50 bp):
ATAAATATATAATATAAAAATAAGAAGTAATATAGTATAATAAAATATAA
Found at i:131877237 original size:13 final size:13
Alignment explanation
Indices: 131877203--131877237 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
131877193 AGAAGAAATG
131877203 AAAGAAAAATTTC
1 AAAGAAAAATTTC
131877216 AGAAG-AAAATTTC
1 A-AAGAAAAATTTC
131877229 AAAGAAAAA
1 AAAGAAAAA
131877238 CAAAATTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 3 0.15
13 14 0.70
14 3 0.15
ACGTcount: A:0.66, C:0.06, G:0.11, T:0.17
Consensus pattern (13 bp):
AAAGAAAAATTTC
Found at i:131879039 original size:33 final size:33
Alignment explanation
Indices: 131879014--131879118 Score: 201
Period size: 33 Copynumber: 3.2 Consensus size: 33
131879004 AATGTTCAAT
131879014 AAATAAATTTATATAAAATTTTTAATGAATATC
1 AAATAAATTTATATAAAATTTTTAATGAATATC
131879047 AAATAAATTTATATAAAATTTTTAATGAATATC
1 AAATAAATTTATATAAAATTTTTAATGAATATC
131879080 AAATAAATTTATATAAAATTTTTAATGAATATC
1 AAATAAATTTATATAAAATTTTTAATGAATATC
*
131879113 TAATAA
1 AAATAA
131879119 TATTAGTATT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
33 71 1.00
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (33 bp):
AAATAAATTTATATAAAATTTTTAATGAATATC
Found at i:131882968 original size:54 final size:54
Alignment explanation
Indices: 131882900--131883002 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 54
131882890 AATTATGTGA
* *
131882900 ACATGAATTGAGTTGTTAATTTTGCAAA-TTGGGCATGGTATGAATGATTGTATC
1 ACATGAATTAAGTTGTTAATTTTGAAAACTT-GGCATGGTATGAATGATTGTATC
* *
131882954 ACATGAGTTAAGTTGTTAATTTTGAAAACTTGGCATGGTTTGAATGATT
1 ACATGAATTAAGTTGTTAATTTTGAAAACTTGGCATGGTATGAATGATT
131883003 ATATTTGATA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
54 42 0.95
55 2 0.05
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (54 bp):
ACATGAATTAAGTTGTTAATTTTGAAAACTTGGCATGGTATGAATGATTGTATC
Found at i:131883219 original size:34 final size:35
Alignment explanation
Indices: 131883181--131883249 Score: 113
Period size: 34 Copynumber: 2.0 Consensus size: 35
131883171 AAGGGACCAA
* *
131883181 AATGGATGATTTTTTTT-ACTTATTTGGCTTTAAG
1 AATGGAAGATTTTTTTTAACCTATTTGGCTTTAAG
131883215 AATGGAAGATTTTTTTTAACCTATTTGGCTTTAAG
1 AATGGAAGATTTTTTTTAACCTATTTGGCTTTAAG
131883250 GTATCCATAC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 16 0.50
35 16 0.50
ACGTcount: A:0.26, C:0.07, G:0.17, T:0.49
Consensus pattern (35 bp):
AATGGAAGATTTTTTTTAACCTATTTGGCTTTAAG
Found at i:131887630 original size:12 final size:12
Alignment explanation
Indices: 131887612--131887650 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
131887602 AAAAGAAAAG
131887612 AAATGAATAAAT
1 AAATGAATAAAT
* *
131887624 GAATGAATATAT
1 AAATGAATAAAT
*
131887636 AAATAAATAAAT
1 AAATGAATAAAT
131887648 AAA
1 AAA
131887651 ACATAACATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.26
Consensus pattern (12 bp):
AAATGAATAAAT
Found at i:131888049 original size:32 final size:27
Alignment explanation
Indices: 131887984--131888039 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
131887974 AAATGGGGAA
131887984 GATTGAAAAATAAAAATCAAGCAATAG
1 GATTGAAAAATAAAAATCAAGCAATAG
131888011 GATTGAAAAATAAAAATCAAGCAATAG
1 GATTGAAAAATAAAAATCAAGCAATAG
131888038 GA
1 GA
131888040 CATAATTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.59, C:0.07, G:0.16, T:0.18
Consensus pattern (27 bp):
GATTGAAAAATAAAAATCAAGCAATAG
Found at i:131888678 original size:13 final size:13
Alignment explanation
Indices: 131888647--131888695 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
131888637 TCACCTCCAA
131888647 TTTTTTTGTATTC
1 TTTTTTTGTATTC
131888660 TATTTTTTG-ATTTC
1 T-TTTTTTGTA-TTC
* *
131888674 TTTTTTTGTGTTT
1 TTTTTTTGTATTC
131888687 TTTTTTTGT
1 TTTTTTTGT
131888696 TCGATTTCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 20 0.65
14 11 0.35
ACGTcount: A:0.06, C:0.04, G:0.10, T:0.80
Consensus pattern (13 bp):
TTTTTTTGTATTC
Found at i:131891856 original size:69 final size:69
Alignment explanation
Indices: 131891776--131891912 Score: 256
Period size: 69 Copynumber: 2.0 Consensus size: 69
131891766 CTCAAACTTT
* *
131891776 GATCACTCTTGGGTAGACCAGCCAACTGCTTGCAAAAATTATAATGTTATATACTTTACGTATCT
1 GATCACTCTTGGGTAGACCAGCCAACTGCTTGCAAAAAGTATAATGTTATATACTTTACGCATCT
131891841 CCTG
66 CCTG
131891845 GATCACTCTTGGGTAGACCAGCCAACTGCTTGCAAAAAGTATAATGTTATATACTTTACGCATCT
1 GATCACTCTTGGGTAGACCAGCCAACTGCTTGCAAAAAGTATAATGTTATATACTTTACGCATCT
131891910 CCT
66 CCT
131891913 CACTGTCACA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 66 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (69 bp):
GATCACTCTTGGGTAGACCAGCCAACTGCTTGCAAAAAGTATAATGTTATATACTTTACGCATCT
CCTG
Found at i:131897127 original size:23 final size:24
Alignment explanation
Indices: 131897079--131897147 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
131897069 ATAAATTATT
**
131897079 TATAAAATTTAATTTATTTATAAA
1 TATAAAATTTAATTTATGAATAAA
131897103 TA-AAAATTGTAATTTATGAAT-AA
1 TATAAAATT-TAATTTATGAATAAA
* *
131897126 TATAAATTTATAATTTAAGAAT
1 TATAAAATT-TAATTTATGAAT
131897148 CGATGCTAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
23 10 0.26
24 28 0.74
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (24 bp):
TATAAAATTTAATTTATGAATAAA
Found at i:131898619 original size:46 final size:44
Alignment explanation
Indices: 131898566--131898729 Score: 123
Period size: 46 Copynumber: 3.6 Consensus size: 44
131898556 ACCTTTTCGA
*
131898566 GTTGAACTTACACGAATCAGATAATAGTGCATGGTCACCTGTTAG
1 GTTGAACTTACACGAATCAGATAATAATGC-TGGTCACCTGTTAG
* * * **
131898611 CGTTGAACTTACCCGAAT-TGAATAATAATGTTTGGTCACCCATTAGG
1 -GTTGAACTTACACGAATCAG-ATAATAATG-CTGGTCACCTGTTA-G
* * * * *
131898658 GTTGGACTTATATGAATCGGATAATAATGTCTGGTCACTTGTTAAG
1 GTTGAACTTACACGAATCAGATAATAATG-CTGGTCACCTGTT-AG
* * **
131898704 GTTGGACCTACATAAATCAGATAATA
1 GTTGAACTTACACGAATCAGATAATA
131898730 GTGTTTGGTT
Statistics
Matches: 94, Mismatches: 19, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
45 1 0.01
46 90 0.96
47 3 0.03
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (44 bp):
GTTGAACTTACACGAATCAGATAATAATGCTGGTCACCTGTTAG
Found at i:131898753 original size:46 final size:46
Alignment explanation
Indices: 131898632--131898761 Score: 152
Period size: 46 Copynumber: 2.8 Consensus size: 46
131898622 CCCGAATTGA
* * * * * *
131898632 ATAATAATGTTTGGTCACCCATTAGGGTTGGACTTATATGAATCGG
1 ATAATAATGTTTGGTCACTCGTTAGGGTTGGACCTACATAAATCAG
* * *
131898678 ATAATAATGTCTGGTCACTTGTTAAGGTTGGACCTACATAAATCAG
1 ATAATAATGTTTGGTCACTCGTTAGGGTTGGACCTACATAAATCAG
* * *
131898724 ATAATAGTGTTTGGTTACTCGTTAGGGTTGAACCTACA
1 ATAATAATGTTTGGTCACTCGTTAGGGTTGGACCTACA
131898762 CAACATATAG
Statistics
Matches: 69, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (46 bp):
ATAATAATGTTTGGTCACTCGTTAGGGTTGGACCTACATAAATCAG
Found at i:131898942 original size:29 final size:30
Alignment explanation
Indices: 131898900--131898961 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
131898890 TCAGGCACTC
131898900 ATCCATAAATTTTC-TTTTTTTCATCGATT
1 ATCCATAAATTTTCTTTTTTTTCATCGATT
*
131898929 ATCCGTAAATTTTCTTTTTTTTCATCGATT
1 ATCCATAAATTTTCTTTTTTTTCATCGATT
131898959 ATC
1 ATC
131898962 AACCATCTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 13 0.42
30 18 0.58
ACGTcount: A:0.23, C:0.18, G:0.05, T:0.55
Consensus pattern (30 bp):
ATCCATAAATTTTCTTTTTTTTCATCGATT
Found at i:131902523 original size:36 final size:36
Alignment explanation
Indices: 131902479--131902550 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
131902469 ATAGGCATAA
*
131902479 AACGTAAATCTTACCGATCATACTTTAATAAATCAT
1 AACGTAAATCTTACCGACCATACTTTAATAAATCAT
* *
131902515 AACGTAAATCTTACCGGCCATATTTTAATAAATCAT
1 AACGTAAATCTTACCGACCATACTTTAATAAATCAT
131902551 TTAACTAACA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.40, C:0.19, G:0.07, T:0.33
Consensus pattern (36 bp):
AACGTAAATCTTACCGACCATACTTTAATAAATCAT
Found at i:131904669 original size:25 final size:25
Alignment explanation
Indices: 131904635--131904690 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
131904625 GAAATTGGAG
*
131904635 CAAAAATATTGTTTCCACTCCATCA
1 CAAAGATATTGTTTCCACTCCATCA
131904660 CAAAGATATTGTTTCCACTCCATCA
1 CAAAGATATTGTTTCCACTCCATCA
131904685 CAAAGA
1 CAAAGA
131904691 ATTAAACACA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.38, C:0.27, G:0.07, T:0.29
Consensus pattern (25 bp):
CAAAGATATTGTTTCCACTCCATCA
Found at i:131907235 original size:32 final size:30
Alignment explanation
Indices: 131907174--131907240 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 30
131907164 GAAGTGATGT
* *
131907174 TTTTATTGTTTTTTTAATTTTTTTGTACTA
1 TTTTATTGTTTTTTTAACTATTTTGTACTA
*
131907204 TTTTATTGTTATTTTTCACTATTTTGCTACTA
1 TTTTATTGTT-TTTTTAACTATTTTG-TACTA
131907236 TTTTA
1 TTTTA
131907241 CTATTATGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
30 10 0.31
31 12 0.38
32 10 0.31
ACGTcount: A:0.18, C:0.07, G:0.06, T:0.69
Consensus pattern (30 bp):
TTTTATTGTTTTTTTAACTATTTTGTACTA
Found at i:131907407 original size:9 final size:9
Alignment explanation
Indices: 131907393--131907417 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
131907383 AAAATATTTA
131907393 TTTTAATAT
1 TTTTAATAT
131907402 TTTTAATAT
1 TTTTAATAT
131907411 TTTTAAT
1 TTTTAAT
131907418 GTATTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTAATAT
Found at i:131907407 original size:25 final size:27
Alignment explanation
Indices: 131907333--131907407 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 27
131907323 TGTTAAGTTG
* *
131907333 TATTCATTTTAATATTATTTAAGTATACA
1 TATTTATTTTAATATT-TTTAAG-ATAAA
* *
131907362 TATATATTTT-TTATTTATTAA-A-AAA
1 TATTTATTTTAATATTT-TTAAGATAAA
131907387 TATTTATTTTAATATTTTTAA
1 TATTTATTTTAATATTTTTAA
131907408 TATTTTTAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
25 15 0.39
26 6 0.16
27 1 0.03
28 8 0.21
29 8 0.21
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (27 bp):
TATTTATTTTAATATTTTTAAGATAAA
Found at i:131908067 original size:33 final size:31
Alignment explanation
Indices: 131908013--131908085 Score: 78
Period size: 33 Copynumber: 2.3 Consensus size: 31
131908003 TTAAAACAAC
* *
131908013 TTATTTGAATAAAAAGTAAATATTAAATATTAG
1 TTATTTGATTAAAAAGAAAATA-TAAA-ATTAG
*
131908046 TTATTTGATTAATAAA-AAAATATAAAGTTAG
1 TTATTTGATTAA-AAAGAAAATATAAAATTAG
131908077 -TATTTGATT
1 TTATTTGATT
131908086 CCATTTGAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
30 9 0.25
31 4 0.11
32 4 0.11
33 16 0.44
34 3 0.08
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (31 bp):
TTATTTGATTAAAAAGAAAATATAAAATTAG
Found at i:131908535 original size:14 final size:14
Alignment explanation
Indices: 131908516--131908554 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
131908506 TTGTTTCACT
131908516 GAAAATGACTTTC-A
1 GAAAATGA-TTTCTA
131908530 GAAAATGATTTCTA
1 GAAAATGATTTCTA
131908544 GAAAATGATTT
1 GAAAATGATTT
131908555 ACTTTTCTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 4 0.17
14 20 0.83
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (14 bp):
GAAAATGATTTCTA
Found at i:131909033 original size:15 final size:15
Alignment explanation
Indices: 131909015--131909066 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
131909005 ACTACAAACC
131909015 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
131909030 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
131909049 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
131909064 ATT
1 ATT
131909067 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:131909130 original size:16 final size:16
Alignment explanation
Indices: 131909099--131909135 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
131909089 ATGTGAATAA
131909099 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
131909115 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
131909131 TATTA
1 TATTA
131909136 AAATAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:131909187 original size:22 final size:22
Alignment explanation
Indices: 131909145--131909202 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
131909135 AAAATAAAAA
*
131909145 TAAAATATTAAA-TA-ATTTAT
1 TAAAATAATAAATTATATTTAT
131909165 TAAAATAATAAATTATATTTAT
1 TAAAATAATAAATTATATTTAT
* * *
131909187 TATATTAATAATTTAT
1 TAAAATAATAAATTAT
131909203 TATATGACTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.34
21 2 0.06
22 19 0.59
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TAAAATAATAAATTATATTTAT
Found at i:131912979 original size:765 final size:767
Alignment explanation
Indices: 131911490--131913040 Score: 2649
Period size: 765 Copynumber: 2.0 Consensus size: 767
131911480 CTTCATATGG
*
131911490 CATTTGGTAATTAAGACCCATTGATTGATTGATGGATGCTATCCCTTTTGTACCTCCCTTTTCTA
1 CATTTGGTAATCAAGACCCATTGATTGATTGATGGATGCTATCCCTTTTGTACCTCCCTTTTCTA
* *
131911555 TTAATTTGGTTTCTTTTATTTGACTGTATATATATATAAAGTACAATATAATTTACTAATATGTA
66 TTAATTTGGTTTCTCTTATTTCACTG-ATATATATATAAAGTACAATATAATTTACTAATATGTA
131911620 AAAGATTTTGTAGGGGATGTAAATCAAACAAGATCTTTTCTTGAACAAGGAAAAATTTCGAAGTT
130 AAAGATTTTGTAGGGGATGTAAATCAAACAAGATCTTTTCTTGAACAAGGAAAAATTTCGAAGTT
*
131911685 CAAATCTCCTTTTTAGCTGAATTGGCAATGAATTATAAGAAATTGCATATTTAGATGTATATATA
195 AAAATCTCCTTTTTAGCTGAATTGGCAATGAATTATAAGAAATTG-----TTA-A-GTATATATA
*
131911750 TATATATATATATTACTAGCCGCAATTTATTAATGGCCAAAAGTCTCTTAGACTGAAAATTAGAA
253 TATATATATATATTACTAGCCGCAATTTATTAATGGCCAAAAGTCTCTAAGACTGAAAATTAGAA
*
131911815 ATTGAAAGAGAAGGGTTTTTTTTTTTTTTATTTCTTTGTTAATAAAGAGATGCTTTTCTCTCTAA
318 ATTGAAAGAGAAGAG------TTTTTTTTATTTCTTTGTTAATAAAGAGATGCTTTTCTCTCTAA
* *
131911880 TAAAAAGTCATTTCTCATCTTTTATATTTAAAAATTGTATCGTTACATATTAATTATATATACAT
377 TAAAAAGTCATTTCTCATCTTTTATATTTAAAAATTGTATCATTACAAATTAATTATATATACAT
* *
131911945 GTCTATGCATCTTTTTTGTTTATATCATTGTCCATTTGTTAATTCTATTGCTTCAGTCTCCTATT
442 GTCTATGCATCTTGTTTGTTTATATCATTGTCCATTTGTTAATTCTATTGCTTCAATCTCCTATT
131912010 TACCCTTTAAATTTTTATGTATATTTATATGTTTAGCATTAGACTTACCAAAATATATATATGCT
507 TACCCTTTAAATTTTTATGTATATTTATATGTTTAGCATTAGACTTACCAAAATATATATATGCT
131912075 TTTTATACTTAAAACCCTAAAAGGTTACTAACATTATCCAAGTCCAAAAAAAATACATTATAAGA
572 TTTTATACTTAAAACCCTAAAAGGTTACTAACATTATCCAAGTCCAAAAAAAATACATTATAAGA
131912140 TGCTTTCTTCACCAATTAAATTAATCATATTAATTTCTTTTTTTTTGTCACATAATAGTTACAAA
637 TGCTTTCTTCACCAATTAAATTAATCATATTAATTTCTTTTTTTTTGTCACATAATAGTTACAAA
*
131912205 TAAGGGTAAGGCTCCAACAAGTTCATATTCTAGATTTGCATGGATATTGTCATCTAAGTAGATAC
702 TAAGGGTAAGGCTCCAACAAGTTCATATTCTAGATTTGCAT-GA-A-TGTCATCTAAGCAGATAC
131912270 ATGT
764 ATGT
*
131912274 CATTTGGTAATCAAGATCCATTGATTGATTGATGGATGCTATCCCTTTTGTACCTCCCTTTTCTA
1 CATTTGGTAATCAAGACCCATTGATTGATTGATGGATGCTATCCCTTTTGTACCTCCCTTTTCTA
*
131912339 TTAATTTGGTTTCTCTTATTTCACTG-TATATATATAAAGTGCAATATAATTTACTAATATGTAA
66 TTAATTTGGTTTCTCTTATTTCACTGATATATATATAAAGTACAATATAATTTACTAATATGTAA
131912403 AAGATTTTGTAGGGGATGTAAATCAAACAAGATCTTTTCTTGAACAAGGAAAAATTTCGAAGTTA
131 AAGATTTTGTAGGGGATGTAAATCAAACAAGATCTTTTCTTGAACAAGGAAAAATTTCGAAGTTA
131912468 AAATCTCCTTTTTAGCTGAATTGGCAATGAATTATAAGAAATTG-T-A-TAT-T-TATAT-TATA
196 AAATCTCCTTTTTAGCTGAATTGGCAATGAATTATAAGAAATTGTTAAGTATATATATATATATA
131912527 TATATTACTAGCCGCAATTTATTAATGGCCAAAAGTCTCTAAGACTGAAAATTAGAAATTGAAAG
261 TATATTACTAGCCGCAATTTATTAATGGCCAAAAGTCTCTAAGACTGAAAATTAGAAATTGAAAG
131912592 AGAAGAG-TTTTTTT-TTTC-TTGTTAATAAAGAGATGCTTTTCTCTCTAATAAAAAGTCATTTT
326 AGAAGAGTTTTTTTTATTTCTTTGTTAATAAAGAGATGCTTTTCTCTCTAATAAAAAGTC-----
* *
131912654 ATTTCTCATCTTTTATATTTAAAAATTTTATCATTACAAATTAATTGTATATACATGTCTATGCA
386 ATTTCTCATCTTTTATATTTAAAAATTGTATCATTACAAATTAATTATATATACATGTCTATGCA
131912719 TCTTGTTTGTTTATATCATTGTCCATTTGTTAATTCTATTGCTTCAATCTCCTATTTACCCTTTA
451 TCTTGTTTGTTTATATCATTGTCCATTTGTTAATTCTATTGCTTCAATCTCCTATTTACCCTTTA
131912784 AATTTTTATGTATATTTATATGTTTAGCATTAGACTTACCAATATATATATATATGCTTTTTATA
516 AATTTTTATGTATATTTATATGTTTAGCATTAGACTTACCAA-A-ATATATATATGCTTTTTATA
131912849 CTTAAAACCCTAAAAGGTTACTAACATTATCCAAGTCCAAAAAAAATACATTATAAGATGCTTTC
579 CTTAAAACCCTAAAAGGTTACTAACATTATCCAAGTCCAAAAAAAATACATTATAAGATGCTTTC
131912914 TTCACCAATTAAATTAATCATATTAATTTC-TTTTTTTT-TCACATAATAGTTACAAATAAGGGT
644 TTCACCAATTAAATTAATCATATTAATTTCTTTTTTTTTGTCACATAATAGTTACAAATAAGGGT
* *
131912977 AAGGCTTCAACAAGTTTATATTCTAGATTTGCATGAATGTCATCTAAGCAGATACATGT
709 AAGGCTCCAACAAGTTCATATTCTAGATTTGCATGAATGTCATCTAAGCAGATACATGT
131913036 CATTT
1 CATTT
131913041 TCAGTTATTA
Statistics
Matches: 743, Mismatches: 17, Indels: 36
0.93 0.02 0.05
Matches are distributed among these distances:
760 39 0.05
761 4 0.01
762 33 0.04
763 1 0.00
764 2 0.00
765 223 0.30
766 9 0.01
767 115 0.15
769 74 0.10
770 5 0.01
771 1 0.00
772 3 0.00
774 1 0.00
776 1 0.00
782 145 0.20
784 87 0.12
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (767 bp):
CATTTGGTAATCAAGACCCATTGATTGATTGATGGATGCTATCCCTTTTGTACCTCCCTTTTCTA
TTAATTTGGTTTCTCTTATTTCACTGATATATATATAAAGTACAATATAATTTACTAATATGTAA
AAGATTTTGTAGGGGATGTAAATCAAACAAGATCTTTTCTTGAACAAGGAAAAATTTCGAAGTTA
AAATCTCCTTTTTAGCTGAATTGGCAATGAATTATAAGAAATTGTTAAGTATATATATATATATA
TATATTACTAGCCGCAATTTATTAATGGCCAAAAGTCTCTAAGACTGAAAATTAGAAATTGAAAG
AGAAGAGTTTTTTTTATTTCTTTGTTAATAAAGAGATGCTTTTCTCTCTAATAAAAAGTCATTTC
TCATCTTTTATATTTAAAAATTGTATCATTACAAATTAATTATATATACATGTCTATGCATCTTG
TTTGTTTATATCATTGTCCATTTGTTAATTCTATTGCTTCAATCTCCTATTTACCCTTTAAATTT
TTATGTATATTTATATGTTTAGCATTAGACTTACCAAAATATATATATGCTTTTTATACTTAAAA
CCCTAAAAGGTTACTAACATTATCCAAGTCCAAAAAAAATACATTATAAGATGCTTTCTTCACCA
ATTAAATTAATCATATTAATTTCTTTTTTTTTGTCACATAATAGTTACAAATAAGGGTAAGGCTC
CAACAAGTTCATATTCTAGATTTGCATGAATGTCATCTAAGCAGATACATGT
Found at i:131924189 original size:41 final size:42
Alignment explanation
Indices: 131924132--131924212 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 42
131924122 AATCTCTTCC
131924132 TTTGAGTGGCTAAAATGGAAACA-TGATGCAAATGCGATGAT
1 TTTGAGTGGCTAAAATGGAAACAGTGATGCAAATGCGATGAT
*
131924173 TTTGAGTGGCTAAAATGGAAACAGTGATGCAAATGTGATG
1 TTTGAGTGGCTAAAATGGAAACAGTGATGCAAATGCGATG
131924213 GTTTGGTTTG
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
41 23 0.61
42 15 0.39
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (42 bp):
TTTGAGTGGCTAAAATGGAAACAGTGATGCAAATGCGATGAT
Found at i:131941372 original size:19 final size:19
Alignment explanation
Indices: 131941314--131941372 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
131941304 ATCTTTGAGG
*
131941314 AATATTATAAAAATATCGA
1 AATATTATAAAAATATCTA
** *
131941333 TGTA-T-TAACAATAT-TA
1 AATATTATAAAAATATCTA
131941349 TAATATTATAAAAATATCTA
1 -AATATTATAAAAATATCTA
131941369 AATA
1 AATA
131941373 AGAATTACAG
Statistics
Matches: 29, Mismatches: 7, Indels: 8
0.66 0.16 0.18
Matches are distributed among these distances:
16 1 0.03
17 10 0.34
18 2 0.07
19 14 0.48
20 2 0.07
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.37
Consensus pattern (19 bp):
AATATTATAAAAATATCTA
Found at i:131941636 original size:4 final size:4
Alignment explanation
Indices: 131941627--131941654 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
131941617 AAATAATTTC
131941627 TAAT TAAT TAAT TAAT TAAT TAAT TAAT
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT
131941655 CTTCTTTTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:131966315 original size:21 final size:21
Alignment explanation
Indices: 131966289--131966332 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
131966279 AATAATATTT
131966289 ATCTTTACTGGCTGAACCTTG
1 ATCTTTACTGGCTGAACCTTG
131966310 ATCTTTACTGGCTGAACCTTG
1 ATCTTTACTGGCTGAACCTTG
131966331 AT
1 AT
131966333 ATTGTTAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (21 bp):
ATCTTTACTGGCTGAACCTTG
Found at i:131972019 original size:108 final size:108
Alignment explanation
Indices: 131971830--131972029 Score: 328
Period size: 108 Copynumber: 1.9 Consensus size: 108
131971820 ATCAACTCGA
* * * * *
131971830 TTAAGAAATTACGGATATGTTCTTCCATAATTAGAATGAGTCATATTATTTGAAGGTATTTTAAT
1 TTAAGAAATTACGGATATATCCTTCCATAATTAAAATGAGTCATATAATTCGAAGGTATTTTAAT
131971895 ATTTTCATTTTAATAAAAACCAAGAAATCGGGTACAAACTTAG
66 ATTTTCATTTTAATAAAAACCAAGAAATCGGGTACAAACTTAG
* *
131971938 TTAAGAAATTACGGATATATCCTTCCGTAATTAAAATGAGTCATATAATTCGAGGGTATTTTAAT
1 TTAAGAAATTACGGATATATCCTTCCATAATTAAAATGAGTCATATAATTCGAAGGTATTTTAAT
*
131972003 CTTTTCATTTTAATAAAAACCAAGAAA
66 ATTTTCATTTTAATAAAAACCAAGAAA
131972030 AATATGCATA
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
108 84 1.00
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (108 bp):
TTAAGAAATTACGGATATATCCTTCCATAATTAAAATGAGTCATATAATTCGAAGGTATTTTAAT
ATTTTCATTTTAATAAAAACCAAGAAATCGGGTACAAACTTAG
Found at i:131972647 original size:62 final size:61
Alignment explanation
Indices: 131972532--131972657 Score: 189
Period size: 62 Copynumber: 2.0 Consensus size: 61
131972522 AGGTTCAACC
* *
131972532 TTGAAATTATTAAGTCTTCAATTAGTAGAAAAAATAACATACGTTAGCATTTAAACAGGGT
1 TTGAAATTATTAAGTCTTCAATGAGTAGAAAAAATAACATACGTTAGCATTTAAACAGGAT
* * * *
131972593 TTGAAATTATTAAGTCTTCAGTGAGTTATAAAAAATAATATACGTTAGCATTTAAATAGGAT
1 TTGAAATTATTAAGTCTTCAATGAG-TAGAAAAAATAACATACGTTAGCATTTAAACAGGAT
131972655 TTG
1 TTG
131972658 CCTGGACAGT
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
61 23 0.40
62 35 0.60
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (61 bp):
TTGAAATTATTAAGTCTTCAATGAGTAGAAAAAATAACATACGTTAGCATTTAAACAGGAT
Found at i:131975968 original size:58 final size:61
Alignment explanation
Indices: 131975888--131976012 Score: 161
Period size: 58 Copynumber: 2.1 Consensus size: 61
131975878 GGTAAACTAT
* *
131975888 TATAAAATAGTATCTGAATATTAATTTA-GTAAAAA-AAA-TT-AATAATTACAATATCTAAA
1 TATAAAAGAGTATCTAAATATTAA-TTAGGTAAAAATAAACTTAAATAATTACAATATCT-AA
* *
131975947 TATAAAAGA-TATCTAAATATTAATTAGGTAAAAATAAACTTAAATAATTATACTATCTAA
1 TATAAAAGAGTATCTAAATATTAATTAGGTAAAAATAAACTTAAATAATTACAATATCTAA
131976007 TATAAA
1 TATAAA
131976013 TTCAGCATTT
Statistics
Matches: 58, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
57 3 0.05
58 20 0.34
59 11 0.19
60 10 0.17
61 14 0.24
ACGTcount: A:0.54, C:0.06, G:0.05, T:0.35
Consensus pattern (61 bp):
TATAAAAGAGTATCTAAATATTAATTAGGTAAAAATAAACTTAAATAATTACAATATCTAA
Found at i:131988159 original size:60 final size:60
Alignment explanation
Indices: 131988082--131988195 Score: 176
Period size: 60 Copynumber: 1.9 Consensus size: 60
131988072 AATTAATGAC
131988082 AATTTTGGTCACCAATATTTGTATATTTTGTCAAAAGT-ATCCTAATTGTATTTTTGAGAT
1 AATTTTGGTCACCAATATTTGTATATTTTGTCAAAA-TAATCCTAATTGTATTTTTGAGAT
* * **
131988142 AATTTTGGTCACTAATATTTGTATGTTTTGTCAAAATAATTTTAATTGTATTTT
1 AATTTTGGTCACCAATATTTGTATATTTTGTCAAAATAATCCTAATTGTATTTT
131988196 GAACCTTTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
59 1 0.02
60 48 0.98
ACGTcount: A:0.30, C:0.08, G:0.12, T:0.50
Consensus pattern (60 bp):
AATTTTGGTCACCAATATTTGTATATTTTGTCAAAATAATCCTAATTGTATTTTTGAGAT
Found at i:131992093 original size:20 final size:20
Alignment explanation
Indices: 131992068--131992115 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
131992058 CGATTGGCTC
131992068 AATTAAAAATCATAAA-AAAA
1 AATTAAAAAT-ATAAATAAAA
131992088 AATT-AAAATATAAATTAAAA
1 AATTAAAAATATAAA-TAAAA
131992108 AA-TAAAAA
1 AATTAAAAA
131992116 AAAACTTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 5 0.20
19 6 0.24
20 14 0.56
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (20 bp):
AATTAAAAATATAAATAAAA
Found at i:131992102 original size:12 final size:12
Alignment explanation
Indices: 131992080--131992113 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
131992070 TTAAAAATCA
131992080 TAAAAAA-AAAT
1 TAAAAAATAAAT
*
131992091 TAAAATATAAAT
1 TAAAAAATAAAT
131992103 TAAAAAATAAA
1 TAAAAAATAAA
131992114 AAAAAACTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
TAAAAAATAAAT
Found at i:132006442 original size:26 final size:26
Alignment explanation
Indices: 132006413--132006492 Score: 133
Period size: 26 Copynumber: 3.1 Consensus size: 26
132006403 TTATAAATTT
132006413 ATAACTACCAAGTAATCCTATTGCTC
1 ATAACTACCAAGTAATCCTATTGCTC
132006439 ATAACTACCAAGTAATCCTATTGCTC
1 ATAACTACCAAGTAATCCTATTGCTC
* * *
132006465 ATAACAACTAAGTAATCCTATTACTC
1 ATAACTACCAAGTAATCCTATTGCTC
132006491 AT
1 AT
132006493 CAAGCTAAGT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (26 bp):
ATAACTACCAAGTAATCCTATTGCTC
Done.