Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 431 of 438
Found at i:132856967 original size:21 final size:21
Alignment explanation
Indices: 132856943--132856984 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
132856933 CATCACTTAA
*
132856943 TACGTTAGTATAACATAATTT
1 TACGTCAGTATAACATAATTT
*
132856964 TACGTCGGTATAACATAATTT
1 TACGTCAGTATAACATAATTT
132856985 ACAAATAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (21 bp):
TACGTCAGTATAACATAATTT
Found at i:132858044 original size:136 final size:137
Alignment explanation
Indices: 132857800--132858083 Score: 493
Period size: 136 Copynumber: 2.1 Consensus size: 137
132857790 CATTGGGCCT
** * *
132857800 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTAGGCCTT
132857865 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
132857929 CATATGC
131 CATATGC
*
132857936 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTAGGCCTT
*
132858001 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
132858066 CATATGC
131 CATATGC
132858073 AAG--CATTTGGG
1 AAGCCCATTTGGG
132858084 GAGACTACTC
Statistics
Matches: 141, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
135 8 0.06
136 121 0.86
137 12 0.09
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTAGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:132860005 original size:26 final size:26
Alignment explanation
Indices: 132859869--132860004 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
132859859 CATGATATTC
132859869 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
132859895 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
132859921 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
132859947 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
132859973 TTATCAAGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
132859999 TTATCA
1 TTATCA
132860005 ATTTGTATCA
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:132862309 original size:22 final size:22
Alignment explanation
Indices: 132862253--132862311 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
132862243 TTTCACTATT
* * **
132862253 TTAAATATAAAATACTTATATT
1 TTAAATAAAAAATAATTATAAA
* *
132862275 TTACATAACAAATAATTATAAA
1 TTAAATAAAAAATAATTATAAA
132862297 TTAAATAAAAAATAA
1 TTAAATAAAAAATAA
132862312 GATTTGATTC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (22 bp):
TTAAATAAAAAATAATTATAAA
Found at i:132862940 original size:16 final size:16
Alignment explanation
Indices: 132862919--132862952 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
132862909 GAGGGTCACA
132862919 CTCTCTTAGCTTGAAT
1 CTCTCTTAGCTTGAAT
132862935 CTCTCTTAGCTTGAAT
1 CTCTCTTAGCTTGAAT
132862951 CT
1 CT
132862953 TGATACATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.26, G:0.12, T:0.44
Consensus pattern (16 bp):
CTCTCTTAGCTTGAAT
Found at i:132865849 original size:22 final size:25
Alignment explanation
Indices: 132865816--132865871 Score: 82
Period size: 22 Copynumber: 2.4 Consensus size: 25
132865806 TATACTTAAA
*
132865816 AAATATATTAAATTTTTAA-A-TAT
1 AAATATAATAAATTTTTAATATTAT
132865839 -AATATAATAAATTTTTAATATTAT
1 AAATATAATAAATTTTTAATATTAT
132865863 AAATATAAT
1 AAATATAAT
132865872 TTATGCTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 17 0.59
23 1 0.03
24 3 0.10
25 8 0.28
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
AAATATAATAAATTTTTAATATTAT
Found at i:132866045 original size:12 final size:12
Alignment explanation
Indices: 132866028--132866053 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
132866018 TAATTTTTTT
132866028 ATTTTAGAAATA
1 ATTTTAGAAATA
132866040 ATTTTAGAAATA
1 ATTTTAGAAATA
132866052 AT
1 AT
132866054 AGATATGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (12 bp):
ATTTTAGAAATA
Found at i:132867034 original size:32 final size:32
Alignment explanation
Indices: 132866998--132867064 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
132866988 AGACAAGTTG
132866998 AAACTTTAGGGGTTACAAGCTCTCATGACCTA
1 AAACTTTAGGGGTTACAAGCTCTCATGACCTA
132867030 AAACTTTAGGGGTTACAAGCTCTCATGACCTA
1 AAACTTTAGGGGTTACAAGCTCTCATGACCTA
132867062 AAA
1 AAA
132867065 AATATAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (32 bp):
AAACTTTAGGGGTTACAAGCTCTCATGACCTA
Found at i:132867308 original size:29 final size:29
Alignment explanation
Indices: 132867272--132867328 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
132867262 GCTTATATGA
** *
132867272 ATTTTAATATTTTTTTAT-ATTTTTTAAG
1 ATTTTAATACATTTTTATAATATTTTAAG
132867300 ATTTCTAATACATTTTTATAATATTTTAA
1 ATTT-TAATACATTTTTATAATATTTTAA
132867329 ATATGTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.17
29 12 0.50
30 8 0.33
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (29 bp):
ATTTTAATACATTTTTATAATATTTTAAG
Found at i:132867325 original size:11 final size:11
Alignment explanation
Indices: 132867276--132867383 Score: 55
Period size: 11 Copynumber: 9.7 Consensus size: 11
132867266 ATATGAATTT
132867276 TAATATTTTT-
1 TAATATTTTTA
*
132867286 TTATATTTTT-
1 TAATATTTTTA
* *
132867296 TAAGATTTCTA
1 TAATATTTTTA
*
132867307 -ATACATTTTTA
1 TA-ATATTTTTA
132867318 TAATA-TTTTA
1 TAATATTTTTA
132867328 -AATATGTTTTA
1 TAATAT-TTTTA
*
132867339 TTAATTTTTTTAA
1 -TAATATTTTT-A
* *
132867352 AAATTATAATTTA
1 TAA-TAT-TTTTA
*
132867365 TTATATTTTTA
1 TAATATTTTTA
132867376 TAATATTT
1 TAATATTT
132867384 ATAAGTTTTT
Statistics
Matches: 73, Mismatches: 15, Indels: 19
0.68 0.14 0.18
Matches are distributed among these distances:
9 4 0.05
10 22 0.30
11 25 0.34
12 10 0.14
13 9 0.12
14 3 0.04
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (11 bp):
TAATATTTTTA
Found at i:132867369 original size:10 final size:9
Alignment explanation
Indices: 132867355--132867485 Score: 63
Period size: 9 Copynumber: 14.4 Consensus size: 9
132867345 TTTTTAAAAA
132867355 TTATAATTT
1 TTATAATTT
132867364 ATTAT-ATTT
1 -TTATAATTT
*
132867373 TTATAATAT
1 TTATAATTT
132867382 TTATAAGTTT
1 TTATAA-TTT
*
132867392 TTATAAGTTG
1 TTATAA-TTT
* * * * *
132867402 ATGTCAGTC
1 TTATAATTT
132867411 TTA-AATTT
1 TTATAATTT
132867419 TT-T-ATTT
1 TTATAATTT
* *
132867426 TTTTAATAT
1 TTATAATTT
132867435 TTATAATTTT
1 TTATAA-TTT
*
132867445 TTACAATTT
1 TTATAATTT
* *
132867454 TTCTGATTT
1 TTATAATTT
*
132867463 TTAAAATTT
1 TTATAATTT
*
132867472 TTAATTATTT
1 TT-ATAATTT
132867482 TTAT
1 TTAT
132867486 GGGAAATATA
Statistics
Matches: 89, Mismatches: 25, Indels: 15
0.69 0.19 0.12
Matches are distributed among these distances:
7 6 0.07
8 9 0.10
9 42 0.47
10 32 0.36
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.62
Consensus pattern (9 bp):
TTATAATTT
Found at i:132867385 original size:27 final size:28
Alignment explanation
Indices: 132867335--132867396 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
132867325 TTAAATATGT
*
132867335 TTTATTA-ATTTTTTTAAAAATTATAA-
1 TTTATTATATTTTTATAAAAATTATAAG
* *
132867361 TTTATTATATTTTTATAATATTTATAAG
1 TTTATTATATTTTTATAAAAATTATAAG
132867389 TTT-TTATA
1 TTTATTATA
132867397 AGTTGATGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.23
27 21 0.68
28 3 0.10
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (28 bp):
TTTATTATATTTTTATAAAAATTATAAG
Found at i:132869670 original size:3 final size:3
Alignment explanation
Indices: 132869664--132869875 Score: 114
Period size: 3 Copynumber: 72.7 Consensus size: 3
132869654 AAATATACAC
* * *
132869664 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA TAT TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
** * * *
132869712 -AA TACA -AA -AA GCA -AA T-G TAA T-A TAA TAA AAA TAT TAA -AA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
132869751 TAA -AG TAA TTAA -AA -AA TAA TAC T-A TGTA TAA -ATA TATA TACA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA T-AA TAA TA-A TA-A TA-A
132869793 -AA TACA TATA TAA TAA -AA -AA T-A TACA CTAA TAA TAA TAA TAA TAA
1 TAA TA-A TA-A TAA TAA TAA TAA TAA TA-A -TAA TAA TAA TAA TAA TAA
*
132869838 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
132869876 TTGAAATATA
Statistics
Matches: 166, Mismatches: 23, Indels: 40
0.72 0.10 0.17
Matches are distributed among these distances:
2 24 0.14
3 120 0.72
4 20 0.12
5 2 0.01
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:132869881 original size:168 final size:168
Alignment explanation
Indices: 132869664--132870054 Score: 601
Period size: 168 Copynumber: 2.3 Consensus size: 168
132869654 AAATATACAC
*
132869664 TAATAATAATAATAATAATAATAATAATAATAATAGTAATAATATTGAAATACAAAAAGCAAATG
1 TAATAATAATAATAATAATAATAATAATAATAATAGTAATAATATTGAAATACAAAAAGCAAATA
132869729 TAATATAATAAAAATATTAAAATAAAGTAATTAAAAAATAATACTATGTATAAATATATATACAA
66 TAATATAATAAAAATATTAAAATAAAGTAATT-AAAAA-AATACTATGTATAAATATATATACAA
132869794 ATACATATATAAT-AAAAAATATACACTAATA-ATAATAA
129 ATACATATATAATAAAAAAATATACACTAATATATAATAA
*
132869832 TAATAATAATAATAATAATAATAATAATAATAATAGTAATAATATTGAAATATAAAAAGCAAATA
1 TAATAATAATAATAATAATAATAATAATAATAATAGTAATAATATTGAAATACAAAAAGCAAATA
* * *
132869897 TGATATAATAAAAATATTAAAGTAAAGTAATTAAAAAAATACTATGTATAAATATATATACATAT
66 TAATATAATAAAAATATTAAAATAAAGTAATTAAAAAAATACTATGTATAAATATATATACAAAT
*
132869962 ACATATATAATAAAAAAAATATACACTAATATGTAATAA
131 ACATATATAAT-AAAAAAATATACACTAATATATAATAA
* * * *
132870001 TAATAATAGTGATTAGATTAATAATATTAGA-AATAATAATAATAATATT-AAATA
1 TAATAATAAT-AATA-A-TAATAATAATA-ATAATAATAGTAATAATATTGAAATA
132870055 AAGAAACGAA
Statistics
Matches: 206, Mismatches: 10, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
166 38 0.18
167 5 0.02
168 111 0.54
169 15 0.07
170 3 0.01
171 6 0.03
172 27 0.13
173 1 0.00
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (168 bp):
TAATAATAATAATAATAATAATAATAATAATAATAGTAATAATATTGAAATACAAAAAGCAAATA
TAATATAATAAAAATATTAAAATAAAGTAATTAAAAAAATACTATGTATAAATATATATACAAAT
ACATATATAATAAAAAAATATACACTAATATATAATAA
Found at i:132876518 original size:6 final size:6
Alignment explanation
Indices: 132876507--132876531 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
132876497 TATGTTCAGA
132876507 TTAAAT TTAAAT TTAAAT TTAAAT T
1 TTAAAT TTAAAT TTAAAT TTAAAT T
132876532 AATCGAATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAAAT
Found at i:132876666 original size:3 final size:3
Alignment explanation
Indices: 132876658--132876715 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
132876648 AATGGATCGA
132876658 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
132876706 TAT TAT TAT T
1 TAT TAT TAT T
132876716 GACTTAACAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:132883181 original size:39 final size:34
Alignment explanation
Indices: 132883102--132883180 Score: 149
Period size: 34 Copynumber: 2.3 Consensus size: 34
132883092 TGAGAAACAA
132883102 AAATGTCATGTTTTTATTTATTTTCTTGTTGAAC
1 AAATGTCATGTTTTTATTTATTTTCTTGTTGAAC
*
132883136 AAATGTCATGTTTTTATTTTTTTTCTTGTTGAAC
1 AAATGTCATGTTTTTATTTATTTTCTTGTTGAAC
132883170 AAATGTCATGT
1 AAATGTCATGT
132883181 CTTTCTTTGT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.24, C:0.09, G:0.13, T:0.54
Consensus pattern (34 bp):
AAATGTCATGTTTTTATTTATTTTCTTGTTGAAC
Found at i:132883920 original size:39 final size:39
Alignment explanation
Indices: 132883872--132883946 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
132883862 TTTTGTGAAA
132883872 GATTGACTAAAAGTGTAAATTTACTATTTTAGAAAAATG
1 GATTGACTAAAAGTGTAAATTTACTATTTTAGAAAAATG
132883911 GATTGACTAAAAGTGTAAATTTACTATTTTAGAAAA
1 GATTGACTAAAAGTGTAAATTTACTATTTTAGAAAA
132883947 GTGGGCAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.44, C:0.05, G:0.15, T:0.36
Consensus pattern (39 bp):
GATTGACTAAAAGTGTAAATTTACTATTTTAGAAAAATG
Found at i:132885186 original size:37 final size:37
Alignment explanation
Indices: 132885152--132885233 Score: 92
Period size: 37 Copynumber: 2.2 Consensus size: 37
132885142 AGGTTTTAGA
*
132885152 GACTAAATCGTAAAAATTATAAAATTTGAATTTTAAG
1 GACTAAATCGTAAAAACTATAAAATTTGAATTTTAAG
** * * ** *
132885189 GACTATTTTGTAAAAACTGTAAAATTTGAGGTATAAG
1 GACTAAATCGTAAAAACTATAAAATTTGAATTTTAAG
132885226 GACTAAAT
1 GACTAAAT
132885234 ATTGACATAA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.34
Consensus pattern (37 bp):
GACTAAATCGTAAAAACTATAAAATTTGAATTTTAAG
Found at i:132889820 original size:52 final size:49
Alignment explanation
Indices: 132889724--132889824 Score: 121
Period size: 52 Copynumber: 2.0 Consensus size: 49
132889714 GTGAGCTAAG
*** *
132889724 TAATGGGAAGCTCATACGAGCTGTATATCGGGAAGCTTAAGAGAGCCAT
1 TAATGGGAAGCTCATACGAGCCAAATATCGGGAAGCTCAAGAGAGCCAT
**
132889773 TAATCGGGAAGCTCATGACAGAGCCAAATATCGGGAAGCTCGTGAGAGCCAT
1 TAAT-GGGAAGCTCAT-AC-GAGCCAAATATCGGGAAGCTCAAGAGAGCCAT
132889825 GGTGTGTCCG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
49 4 0.09
50 11 0.26
51 2 0.05
52 26 0.60
ACGTcount: A:0.33, C:0.19, G:0.29, T:0.20
Consensus pattern (49 bp):
TAATGGGAAGCTCATACGAGCCAAATATCGGGAAGCTCAAGAGAGCCAT
Found at i:132890931 original size:20 final size:20
Alignment explanation
Indices: 132890906--132890958 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
132890896 AGGGGCACAT
* *
132890906 GCCCGTGTGGCTTGGGACAC
1 GCCCGTGTGGCCTGGAACAC
132890926 GCCCGTGTGGCCTGGAACAC
1 GCCCGTGTGGCCTGGAACAC
132890946 GCCCGTGTGGCCT
1 GCCCGTGTGGCCT
132890959 ACCCATGTGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.09, C:0.34, G:0.38, T:0.19
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGAACAC
Found at i:132891998 original size:2 final size:2
Alignment explanation
Indices: 132891991--132892024 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
132891981 TAATATTAAA
*
132891991 AT AT AT AT A- AT AT AT AC AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
132892025 AAATAAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:132892001 original size:17 final size:17
Alignment explanation
Indices: 132891981--132892034 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
132891971 ATATAACTAG
132891981 TAATATTAAAATATATA
1 TAATATTAAAATATATA
*
132891998 TAATA-TATACATATATA
1 TAATATTA-AAATATATA
*
132892015 TATATATATAAAATAAATA
1 TA-ATAT-TAAAATATATA
132892034 T
1 T
132892035 TGAAAAATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
16 2 0.07
17 15 0.50
18 3 0.10
19 8 0.27
20 2 0.07
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATATTAAAATATATA
Found at i:132892387 original size:9 final size:9
Alignment explanation
Indices: 132892347--132892386 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
132892337 AAATATAATA
*
132892347 AATAATAAT
1 AATAACAAT
132892356 AATAACAAT
1 AATAACAAT
132892365 AATAACAAT
1 AATAACAAT
*
132892374 AATAGCAAT
1 AATAACAAT
132892383 AATA
1 AATA
132892387 GTAAAAATAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.65, C:0.07, G:0.03, T:0.25
Consensus pattern (9 bp):
AATAACAAT
Found at i:132892572 original size:3 final size:3
Alignment explanation
Indices: 132892566--132892687 Score: 131
Period size: 3 Copynumber: 39.7 Consensus size: 3
132892556 ATAGTAAATG
* * *
132892566 TAA TAA TAA TAA TAA TAA TAT TAA GT-A TAG T-A TAAA TAA TATG TACA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TA-A TA-A
* * *
132892613 TAA CAG TAA TAA TAA TAA GTAA CAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA
132892659 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
132892688 TAGAAATTCA
Statistics
Matches: 100, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
2 2 0.02
3 88 0.88
4 10 0.10
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:132892745 original size:16 final size:16
Alignment explanation
Indices: 132892712--132892744 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
132892702 AACTAAACAT
*
132892712 AATATAATAATATTAA
1 AATAAAATAATATTAA
132892728 AATAAAATAAT-TTAA
1 AATAAAATAATATTAA
132892743 AA
1 AA
132892745 AATACTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAAAATAATATTAA
Found at i:132894858 original size:73 final size:71
Alignment explanation
Indices: 132894761--132894951 Score: 215
Period size: 73 Copynumber: 2.6 Consensus size: 71
132894751 ATCAATGTGC
* * *
132894761 CCTGACGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTGAAATTACCT
1 CCTGAGGCTCAACTCA-CTTTCGCAATATGAGTTGAATTTTG-AAAATAGAAATTGAAATTACCT
132894826 CAGCGTGT
64 CAGCGTGT
* * * *
132894834 CCTGAGGCTCAACTCACCTTTCGC-A-ATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATAC
1 CCTGAGGCTCAACTCA-CTTTCGCAATATGAGTTGA--ATTTTGAAA-ATAGAAATTGAAATTAC
*
132894897 CTCAGCATGT
62 CTCAGCGTGT
* *
132894907 CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAA
1 CCTGAGGCTCAACTCACTT-TCGCAATATGAGTTGAATTTTGAAA
132894952 CATAAATTAA
Statistics
Matches: 103, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
71 9 0.09
72 6 0.06
73 78 0.76
74 1 0.01
75 9 0.09
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (71 bp):
CCTGAGGCTCAACTCACTTTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTACCTCA
GCGTGT
Found at i:132894893 original size:174 final size:175
Alignment explanation
Indices: 132894566--132894893 Score: 409
Period size: 174 Copynumber: 1.9 Consensus size: 175
132894556 AAAGCATACT
* * * *
132894566 TTGAAAATATCTCGACATGTGACCCGAGGCTCAGCTCACCTCTCGTAATATGAGTTGATTTTAAC
1 TTGAAAATATATCGACATGTGACCCGACGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAC
*
132894631 AAACAGGAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
66 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*********
132894696 TTTTCTTTCTTTTTTTTTTGAAAAGCAGAAATCGGAAAGCAGAAA
131 TTTTCTTTAGACAAAAATTGAAAAGCAGAAATCGGAAAGCAGAAA
132894741 TTGAAAATATATC-A-ATGTG-CCCTGACGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 TTGAAAATATATCGACATGTGACCC-GACGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT-
* *
132894803 AA-AAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTTTCGC-A-ATGAGT
63 AACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
132894865 TGATTTT-TTTGAAAGACAAAAATTGAAAA
128 TGATTTTCTTT---AGACAAAAATTGAAAA
132894894 TACCTCAGCA
Statistics
Matches: 131, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
171 3 0.02
172 16 0.12
173 36 0.27
174 62 0.47
175 14 0.11
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (175 bp):
TTGAAAATATATCGACATGTGACCCGACGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAC
AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTCTTTAGACAAAAATTGAAAAGCAGAAATCGGAAAGCAGAAA
Found at i:132895082 original size:78 final size:73
Alignment explanation
Indices: 132894977--132895486 Score: 443
Period size: 72 Copynumber: 6.9 Consensus size: 73
132894967 AAAAATTTCC
* * *
132894977 AATACCTCAGC--GTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTTAAA
1 AATACCTCAGCATGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAA
*
132895040 GATAGAAATTGAA
62 -ACAGAAATTGAA
* * *
132895053 AATTCCTCAGCATGTGAACCGAGGCTCAACTCTCCTCTCGCAATATGAGTTGATTTTTGAAAACA
1 AATACCTCAGCATGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACA
*
132895118 TAAATTGAA
65 GAAATTGAA
* * * * *
132895127 AATACCTCA--ACGTGTCTTGAGGTTCAACTCA-TTACTCGCAATATGAGTTGAATTTTGAAAAC
1 AATACCTCAGCATGTGTC-CGAGGCTCAACTCACCT-CTCGCAATATGAGTTGATTTTTGAAAAC
132895189 AGAAATTGAA
64 AGAAATTGAA
*
132895199 ATTACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCAATTGATTTTTTGA
1 AATACCTCAGCATGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAG----TTGA-TTTTTGA
*
132895262 AAATAGAAATTGAA
60 AAACAGAAATTGAA
* * ** * *
132895276 AATACCTCAGCATGTCT-TGAGGCTCAACTCATTTCTCGCAATCTGAGTTGAATTTTGAAAACAG
1 AATACCTCAGCATGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAG
132895340 AAATTGAA
66 AAATTGAA
* * ** ** * *
132895348 ATTACCTCA--ACGTGTTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAATAG
1 AATACCTCAGCATGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAG
*
132895411 AAA-TAAA
66 AAATTGAA
* * ** ** * *
132895418 AATTACCTCA--ACGTGTCTTGAGGCTCAACTCATTTCTCTTAATATGAGTTGAATTTTGAAAAT
1 AA-TACCTCAGCATGTGTC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAC
132895481 AGAAAT
64 AGAAAT
132895487 AAAAATATCA
Statistics
Matches: 374, Mismatches: 41, Indels: 41
0.82 0.09 0.09
Matches are distributed among these distances:
70 8 0.02
71 63 0.17
72 164 0.44
73 5 0.01
74 18 0.05
75 8 0.02
76 14 0.04
77 55 0.15
78 36 0.10
79 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (73 bp):
AATACCTCAGCATGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAG
AAATTGAA
Found at i:132895174 original size:72 final size:72
Alignment explanation
Indices: 132895073--132895486 Score: 555
Period size: 72 Copynumber: 5.7 Consensus size: 72
132895063 CATGTGAACC
* * *
132895073 GAGGCTCAACTC-TCCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAAAATACCTCAA
1 GAGGCTCAACTCAT-TTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAA
132895137 CGTGTCTT
65 CGTGTCTT
* * * *
132895145 GAGGTTCAACTCATTACTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAAC
*
132895210 GTGTCCT
66 GTGTCTT
** * *
132895217 GAGGCTCAACTCACCTCTCGCAATATGAGTCAATTGATTTTTTGAAAATAGAAATTGAAAATACC
1 GAGGCTCAACTCATTTCTCGCAATATGAG----TTGA-ATTTTGAAAACAGAAATTGAAAATACC
* *
132895282 TCAGCATGTCTT
61 TCAACGTGTCTT
* *
132895294 GAGGCTCAACTCATTTCTCGCAATCTGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAAC
132895359 GTGT-TT
66 GTGTCTT
* *
132895365 GAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAATAGAAA-TAAAAATTACCTCAA
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAA-TACCTCAA
132895429 CGTGTCTT
65 CGTGTCTT
** *
132895437 GAGGCTCAACTCATTTCTCTTAATATGAGTTGAATTTTGAAAATAGAAAT
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAAT
132895487 AAAAATATCA
Statistics
Matches: 302, Mismatches: 31, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
70 4 0.01
71 62 0.21
72 167 0.55
73 5 0.02
76 4 0.01
77 60 0.20
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (72 bp):
GAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAAC
GTGTCTT
Found at i:132895292 original size:149 final size:143
Alignment explanation
Indices: 132894977--132895486 Score: 596
Period size: 149 Copynumber: 3.5 Consensus size: 143
132894967 AAAAATTTCC
* ** * * * *
132894977 AATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTTAAAGA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA---ATTTTGAAA-A
* * *
132895042 TAGAAATTGAAAATT-CCTCAGCATGTGAACC-GAGGCTCAACTCTCCTCTCGCAATATGAGTTG
61 CAGAAATTG-AAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
132895105 ATTTTTGAAAACATAAATTGAA
122 ATTTTTGAAAATAGAAATTGAA
* *
132895127 AATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGCAATATGAGTTGAATTTTGAAAACAGA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCATT-CTCGCAATATGAGTTGAATTTTGAAAACAGA
132895192 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCAATTGATTT
65 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG----TTGA-TT
132895257 TTTGAAAATAGAAATTGAA
125 TTTGAAAATAGAAATTGAA
* *
132895276 AATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGAATTTTGAAAACAGA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGAATTTTGAAAACAGA
* * ** *
132895341 AATTGAAATTACCTCAACGTGT-TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA
65 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
*
132895405 AAATAGAAA-TAAA
130 AAATAGAAATTGAA
* ** *
132895418 AATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCTTAATATGAGTTGAATTTTGAAAATAG
1 AA-TACCTCAGCGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGAATTTTGAAAACAG
132895483 AAAT
64 AAAT
132895487 AAAAATATCA
Statistics
Matches: 320, Mismatches: 30, Indels: 27
0.85 0.08 0.07
Matches are distributed among these distances:
142 5 0.02
143 77 0.24
144 35 0.11
145 5 0.02
146 16 0.05
147 7 0.02
148 32 0.10
149 99 0.31
150 44 0.14
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (143 bp):
AATACCTCAGCGTGTCTTGAGGCTCAACTCATTCTCGCAATATGAGTTGAATTTTGAAAACAGAA
ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
AATAGAAATTGAA
Found at i:132904241 original size:58 final size:57
Alignment explanation
Indices: 132904151--132904265 Score: 221
Period size: 58 Copynumber: 2.0 Consensus size: 57
132904141 GCTATCACGC
132904151 AGTGCGGTCTCGAGTTCTTCTATTTTCCCTTTCAACTCTTCATTCGCTACTCAGACTA
1 AGTGCGGTCTCGAGTTCTTCTATTTTCCCTTTCAACTCTTCATTC-CTACTCAGACTA
132904209 AGTGCGGTCTCGAGTTCTTCTATTTTCCCTTTCAACTCTTCATTCCTACTCAGACTA
1 AGTGCGGTCTCGAGTTCTTCTATTTTCCCTTTCAACTCTTCATTCCTACTCAGACTA
132904266 GCCTTCAGTT
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
57 12 0.21
58 45 0.79
ACGTcount: A:0.17, C:0.30, G:0.13, T:0.40
Consensus pattern (57 bp):
AGTGCGGTCTCGAGTTCTTCTATTTTCCCTTTCAACTCTTCATTCCTACTCAGACTA
Found at i:132908666 original size:75 final size:75
Alignment explanation
Indices: 132908547--132908718 Score: 205
Period size: 75 Copynumber: 2.4 Consensus size: 75
132908537 CATGGCAAAG
** *
132908547 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
132908606 CCATACTGAGC
65 CCATACCGAGC
132908617 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
132908682 CATACCGAGT
66 CATACCGAGC
***
132908692 TAAAAAAATGTAGGTATGGTATT-TCAA
1 T-GTGAAATGTAGGTATGGTATTATCAA
132908719 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 1 0.01
75 46 0.53
76 18 0.21
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:132908685 original size:35 final size:35
Alignment explanation
Indices: 132908550--132908716 Score: 167
Period size: 35 Copynumber: 4.6 Consensus size: 35
132908540 GGCAAAGTGT
* **
132908550 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
132908585 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
132908620 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
132908660 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTT-AA
*
132908696 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
132908717 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
35 64 0.55
36 21 0.18
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:132908708 original size:36 final size:35
Alignment explanation
Indices: 132908646--132908716 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 35
132908636 ATTATCAAAT
* *
132908646 CCATACTGAGTTAAGAAATGTAGGTATGGCATTTC
1 CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
*
132908681 CCATACCGAGTTAAAAAAATGTAGGTATGGTATTTC
1 CCATACCGAGTT-AAAAAATGTAGGTATGGCATTTC
132908717 AATGAGGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 11 0.34
36 21 0.66
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (35 bp):
CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
Found at i:132910160 original size:2 final size:2
Alignment explanation
Indices: 132910153--132910177 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
132910143 TGTACGTAAA
132910153 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
132910178 AATAGTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:132910305 original size:21 final size:21
Alignment explanation
Indices: 132910264--132910305 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
132910254 TAATGTTAAA
* *
132910264 ATATATATAGTATATACATAT
1 ATATATATAGTAAATAAATAT
132910285 ATATATATA-TAAAATAAATAT
1 ATATATATAGT-AAATAAATAT
132910306 TGAAAAATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
ATATATATAGTAAATAAATAT
Found at i:132910667 original size:3 final size:3
Alignment explanation
Indices: 132910595--132910658 Score: 76
Period size: 3 Copynumber: 20.7 Consensus size: 3
132910585 AAGTACCTAT
*
132910595 TAA TAA TAT TATA TAA -ATA TAA TAAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TA-A TAA TA-A TAA T-AA TAA TAA TAA TAA TAA TAA TAA
*
132910642 TAA TAA TAA CAA TAA TA
1 TAA TAA TAA TAA TAA TA
132910659 GCAATAATAG
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
2 1 0.02
3 46 0.87
4 6 0.11
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:132910853 original size:3 final size:3
Alignment explanation
Indices: 132910847--132911120 Score: 117
Period size: 3 Copynumber: 89.7 Consensus size: 3
132910837 ATAGTAAATG
* * *
132910847 TAA TAA TAA TAA TAA TAA TAT TAA GT-A TAG T-A TAAA TAA TATG TACA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TA-A TA-A
* * *
132910894 TAA CAG TAA TAA TAA TAA GTAA CAA TAA TAA TAA T-A TAGA -AA TTCAA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TA-A TAA -T-AA
* *
132910941 -AA -AA GTAA -ACA TAA T-A TAA TGA TAT TAA -AA TAA -AA T-A TACA
1 TAA TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
* * * *
132910982 CTAA TAT TTA TAAA TAA TAA TAG TAA -ATA TAA TAA TGA TAA TAA TAA
1 -TAA TAA TAA T-AA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
* * *
132911029 TAA TAA TAA TAA TAA TAA TAA TAT TAA GT-A TAG T-A TAAA TAA TATG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TA-A
* * *
132911075 TACA TAA CAG TAA TAA TAA TAA GTAA CAA TAA TAA TAA TAA TAA TA
1 TA-A TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TA
132911121 TAGAAATTCA
Statistics
Matches: 203, Mismatches: 38, Indels: 60
0.67 0.13 0.20
Matches are distributed among these distances:
2 21 0.10
3 149 0.73
4 29 0.14
5 4 0.02
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:132911178 original size:16 final size:16
Alignment explanation
Indices: 132911145--132911177 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
132911135 AACTAAACAT
*
132911145 AATATAATAATATTAA
1 AATAAAATAATATTAA
132911161 AATAAAATAAT-TTAA
1 AATAAAATAATATTAA
132911176 AA
1 AA
132911178 AATACTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAAAATAATATTAA
Found at i:132917012 original size:21 final size:22
Alignment explanation
Indices: 132916986--132917039 Score: 92
Period size: 21 Copynumber: 2.5 Consensus size: 22
132916976 CCTGATCAGT
132916986 ATACGACACACGAGGTGCCTG-
1 ATACGACACACGAGGTGCCTGA
132917007 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTG-A
132917030 ATACGACACA
1 ATACGACACA
132917040 TAAAGTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.68
23 10 0.32
ACGTcount: A:0.35, C:0.28, G:0.24, T:0.13
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTGA
Found at i:132918518 original size:22 final size:23
Alignment explanation
Indices: 132918480--132918526 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
132918470 TGTTCGAATG
132918480 CTTTCTGTTCTCTTTTCTCTATT
1 CTTTCTGTTCTCTTTTCTCTATT
* *
132918503 CTTTTTGTT-TCTTTTCTTTATT
1 CTTTCTGTTCTCTTTTCTCTATT
132918525 CT
1 CT
132918527 ATTTCTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.04, C:0.21, G:0.04, T:0.70
Consensus pattern (23 bp):
CTTTCTGTTCTCTTTTCTCTATT
Found at i:132922431 original size:80 final size:80
Alignment explanation
Indices: 132922298--132922646 Score: 488
Period size: 80 Copynumber: 4.3 Consensus size: 80
132922288 TAATCTTTTT
* **
132922298 ACTCTATCAAGTAAAACCTAATTATCATACACACCT-TCCTTTGCCGCCAACACTTAACACCAAT
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCT-CTCCGCCGCCAACACTTAACACCAAT
132922362 CCTAAAACTCCTTAGA-
65 CCTAAAACTCCTTA-AC
* * *
132922378 ACTCTATCAAGTAAAACTTAAATATCATGCACACCTCTATCCGCCGCCAACACTTAACACCAATC
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCGCCGCCAACACTTAACACCAATC
* *
132922443 CTAAAGCTCCTTAAT
66 CTAAAACTCCTTAAC
* * *
132922458 ATTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCACCGCCAACACTTAATACCAATC
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCGCCGCCAACACTTAACACCAATC
*
132922523 CTAAAACTCATTAAC
66 CTAAAACTCCTTAAC
132922538 ACTCTATCAAGTAAAACCTAAATATCATACACACCT-TCCTCCGCCGCCAACACTTAACACCAAT
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCT-CTCCGCCGCCAACACTTAACACCAAT
* *
132922602 TCTAAAACTCTTTAAC
65 CCTAAAACTCCTTAAC
* * *
132922618 ATTTTATCAAGTAAAAACTAAATACTCAT
1 ACTCTATCAAGTAAAACCTAAATA-TCAT
132922647 TAATACTCTT
Statistics
Matches: 241, Mismatches: 24, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
79 2 0.01
80 234 0.97
81 5 0.02
ACGTcount: A:0.38, C:0.31, G:0.04, T:0.26
Consensus pattern (80 bp):
ACTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCGCCGCCAACACTTAACACCAATC
CTAAAACTCCTTAAC
Found at i:132922753 original size:114 final size:113
Alignment explanation
Indices: 132922522--132922759 Score: 327
Period size: 114 Copynumber: 2.1 Consensus size: 113
132922512 TAATACCAAT
* * *
132922522 CCTAAA-ACTCATTAACACTCTATCAAGTAAAACCTAAATATCATACACACCTTCCTCCGCCGCC
1 CCTAAATACTCATTAACACTCTATAAAGTAAAACCTAAAGATCATACACACCTTCCTCCACCGCC
* * *
132922586 AACACTTAACACCAATTCTAAAACTCTTTAACATTTTATCAAGTAAAA
66 AACACTTAAAACCAATTCTAAAACTCATTAACACTTTATCAAGTAAAA
* * * **
132922634 ACTAAATACTCATTAATACTCTTATAAAGTAAAACCTAAAGATCATTCACATTTTCCTCCACCGC
1 CCTAAATACTCATTAACACTC-TATAAAGTAAAACCTAAAGATCATACACACCTTCCTCCACCGC
* * *
132922699 CAACACTTAAAACCAGTTCTAAAACTCATTAATACTTTATCAAGTGAAA
65 CAACACTTAAAACCAATTCTAAAACTCATTAACACTTTATCAAGTAAAA
132922748 CCTAAATA-TCAT
1 CCTAAATACTCAT
132922760 GTGAACCTCC
Statistics
Matches: 109, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
112 5 0.05
113 17 0.16
114 87 0.80
ACGTcount: A:0.41, C:0.26, G:0.04, T:0.29
Consensus pattern (113 bp):
CCTAAATACTCATTAACACTCTATAAAGTAAAACCTAAAGATCATACACACCTTCCTCCACCGCC
AACACTTAAAACCAATTCTAAAACTCATTAACACTTTATCAAGTAAAA
Found at i:132922759 original size:80 final size:79
Alignment explanation
Indices: 132922634--132922917 Score: 300
Period size: 80 Copynumber: 3.5 Consensus size: 79
132922624 TCAAGTAAAA
* * ** * **
132922634 ACTAAATACTCATTAATACTCTTATAAAGTAAAACCTAAAGATCATTCACATTTTCCTCCACCGC
1 ACTAAA-ACTCATTAATACTC-TATCAAGTAAAACCTAAATATCATTCA-ACCTCCCTCTGCCGC
* *
132922699 CAACACTTAAAACCAGT
63 CAACACTTAACACCAAT
* * * * *
132922716 TCTAAAACTCATTAATACTTTATCAAGTGAAACCTAAATATCATGTGAACCTCCCTTTGCCGCCA
1 ACTAAAACTCATTAATACTCTATCAAGTAAAACCTAAATATCAT-TCAACCTCCCTCTGCCGCCA
132922781 ACACTTTAACACCAAT
65 ACAC-TTAACACCAAT
* * * * *
132922797 CCTAAAACTCCTTTAACACTCTATCAAGTAAAACCTAAATATCATACATACCTCCCTCTGCCACC
1 ACTAAAACT-CATTAATACTCTATCAAGTAAAACCTAAATATCATTCA-ACCTCCCTCTGCCGCC
132922862 AACACTTAACACCAAT
64 AACACTTAACACCAAT
* *
132922878 ACTAAAACTCCTTAA-ACCTCTATTAAGTAAAACCTAAATA
1 ACTAAAACTCATTAATA-CTCTATCAAGTAAAACCTAAATA
132922918 CTCCTTGATA
Statistics
Matches: 171, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
79 1 0.01
80 63 0.37
81 52 0.30
82 55 0.32
ACGTcount: A:0.39, C:0.29, G:0.05, T:0.27
Consensus pattern (79 bp):
ACTAAAACTCATTAATACTCTATCAAGTAAAACCTAAATATCATTCAACCTCCCTCTGCCGCCAA
CACTTAACACCAAT
Found at i:132922835 original size:82 final size:81
Alignment explanation
Indices: 132922695--132922917 Score: 281
Period size: 82 Copynumber: 2.8 Consensus size: 81
132922685 TTTTCCTCCA
* * * * * * *
132922695 CCGCCAACACTTAAAACCAGTTCTAAAACT-CATTAATACTTTATCAAGTGAAACCTAAATATCA
1 CCGCCAACACTTAACACCAATACTAAAACTCCTTTAACACTCTATCAAGTAAAACCTAAATATCA
** *
132922759 TGTGA-ACCTCCCTTTG
66 T-ACATACCTCCCTCTG
*
132922775 CCGCCAACACTTTAACACCAATCCTAAAACTCCTTTAACACTCTATCAAGTAAAACCTAAATATC
1 CCGCCAACAC-TTAACACCAATACTAAAACTCCTTTAACACTCTATCAAGTAAAACCTAAATATC
132922840 ATACATACCTCCCTCTG
65 ATACATACCTCCCTCTG
* * *
132922857 CCACCAACACTTAACACCAATACTAAAACTCCTTAAAC-CTCTATTAAGTAAAACCTAAATA
1 CCGCCAACACTTAACACCAATACTAAAACTCCTTTAACACTCTATCAAGTAAAACCTAAATA
132922918 CTCCTTGATA
Statistics
Matches: 126, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
80 32 0.25
81 44 0.35
82 50 0.40
ACGTcount: A:0.39, C:0.30, G:0.05, T:0.26
Consensus pattern (81 bp):
CCGCCAACACTTAACACCAATACTAAAACTCCTTTAACACTCTATCAAGTAAAACCTAAATATCA
TACATACCTCCCTCTG
Found at i:132922921 original size:33 final size:32
Alignment explanation
Indices: 132922879--132922948 Score: 97
Period size: 33 Copynumber: 2.2 Consensus size: 32
132922869 AACACCAATA
*
132922879 CTAAAACTCCTT-AAACCTCTATTAAGTAAAAC
1 CTAAAACTCCTTGAAA-CTCTATCAAGTAAAAC
*
132922911 CTAAATACTCCTTGATACTCTATCAAGTAAAAC
1 CTAAA-ACTCCTTGAAACTCTATCAAGTAAAAC
132922944 CTAAA
1 CTAAA
132922949 GATCATTCAC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
32 5 0.15
33 27 0.79
34 2 0.06
ACGTcount: A:0.43, C:0.24, G:0.04, T:0.29
Consensus pattern (32 bp):
CTAAAACTCCTTGAAACTCTATCAAGTAAAAC
Found at i:132922946 original size:113 final size:114
Alignment explanation
Indices: 132922797--132923030 Score: 330
Period size: 113 Copynumber: 2.1 Consensus size: 114
132922787 TAACACCAAT
* * *
132922797 CCTAAA-ACTCCTTTAACACTCTATCAAGTAAAACCTAAATATCATACATACCTCCCTCTGCCAC
1 CCTAAATACTCCTTTAACACTCTATCAAGTAAAACCTAAAGATCATACACACCTCCCTCCGCCAC
* *
132922861 CAACACTTAACACCAATACTAAAACTCCTTAA-ACCTCTATTAAGTAAAA
66 CAACACTTAAAACCAATACTAAAACTCCTTAATA-CTCTATCAAGTAAAA
* * * *
132922910 CCTAAATACTCC-TTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGC
1 CCTAAATACTCCTTTAACACTCTATCAAGTAAAACCTAAAGATCATACACACCTCCCTCCGCCAC
* * *
132922974 CAACACTTAAAACCAATCCTAAAACTCCTTAATACTTTATCAAGTGAAA
66 CAACACTTAAAACCAATACTAAAACTCCTTAATACTCTATCAAGTAAAA
132923023 CCTAAATA
1 CCTAAATA
132923031 TCATGTGAAC
Statistics
Matches: 107, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
113 101 0.94
114 6 0.06
ACGTcount: A:0.39, C:0.31, G:0.04, T:0.26
Consensus pattern (114 bp):
CCTAAATACTCCTTTAACACTCTATCAAGTAAAACCTAAAGATCATACACACCTCCCTCCGCCAC
CAACACTTAAAACCAATACTAAAACTCCTTAATACTCTATCAAGTAAAA
Found at i:132923044 original size:80 final size:80
Alignment explanation
Indices: 132922910--132923116 Score: 281
Period size: 80 Copynumber: 2.6 Consensus size: 80
132922900 TTAAGTAAAA
* * *
132922910 CCTAAATACTCCTTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCC
1 CCTAAA-ACTCCTTAATACTCTATCAAGTAAAACCTAAATATCATTCACACCTCCCTCCGCCACC
132922975 AACACTTAAAACCAAT
65 AACACTTAAAACCAAT
* * * * *
132922991 CCTAAAACTCCTTAATACTTTATCAAGTGAAACCTAAATATCATGTGA-ACCTCCCTCTGTCACC
1 CCTAAAACTCCTTAATACTCTATCAAGTAAAACCTAAATATCAT-TCACACCTCCCTCCGCCACC
*
132923055 AACACTTAACACCAAT
65 AACACTTAAAACCAAT
* *
132923071 CTTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATACTCATT
1 CCTAAAACTCCTTAATACTCTATCAAGTAAAACCTAAATA-TCATT
132923117 GATACTCTAT
Statistics
Matches: 111, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
80 99 0.89
81 12 0.11
ACGTcount: A:0.37, C:0.31, G:0.05, T:0.27
Consensus pattern (80 bp):
CCTAAAACTCCTTAATACTCTATCAAGTAAAACCTAAATATCATTCACACCTCCCTCCGCCACCA
ACACTTAAAACCAAT
Found at i:132923067 original size:193 final size:193
Alignment explanation
Indices: 132922717--132923222 Score: 736
Period size: 193 Copynumber: 2.6 Consensus size: 193
132922707 AAAACCAGTT
* * * * * **
132922717 CTAAA-ACTCATTAATACTTTATCAAGTGAAACCTAAATATCATGTGA-ACCTCCCTTTGCCGCC
1 CTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCAT-TCACACCTCCCTCCGCCGCC
*
132922780 AACACTTTAACACCAATCCTAAAACTCCTTTAACACTCTATCAAGTAAAACCTAAATATCATACA
65 AACAC-TTAACACCAATCCTAAAACTCC-TTAATACTCTATCAAGTAAAACCTAAATATCATACA
*
132922845 TACCTCCCTCTGCCACCAACACTTAACACCAATAC-TAAAACTCCTTAA-ACCTCTATTAAGTAA
128 TACCTCCCTCTGCCACCAACACTTAACACCAAT-CTTAAAACTCCTTAACA-CTCTATCAAGTAA
132922908 AAC
191 AAC
*
132922911 CTAAATACTCCTTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCCA
1 CTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCCA
* * * **
132922976 ACACTTAAAACCAATCCTAAAACTCCTTAATACTTTATCAAGTGAAACCTAAATATCATGTGA-A
66 ACACTTAACACCAATCCTAAAACTCCTTAATACTCTATCAAGTAAAACCTAAATATCAT-ACATA
*
132923040 CCTCCCTCTGTCACCAACACTTAACACCAATCTTAAAACTCCTTAACACTCTATCAAGTAAAAC
130 CCTCCCTCTGCCACCAACACTTAACACCAATCTTAAAACTCCTTAACACTCTATCAAGTAAAAC
* *
132923104 CTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATTATTCACACCTCTCTCCGCCGCCA
1 CTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCCA
* *
132923169 ACACTTATCACCAATACTAAAACT-CTTAATACTCTATCAAGTAAAACCTAAATA
66 ACACTTAACACCAATCCTAAAACTCCTTAATACTCTATCAAGTAAAACCTAAATA
132923223 CTCCTTGATA
Statistics
Matches: 283, Mismatches: 24, Indels: 12
0.89 0.08 0.04
Matches are distributed among these distances:
192 29 0.10
193 172 0.61
194 30 0.11
195 52 0.18
ACGTcount: A:0.38, C:0.30, G:0.05, T:0.27
Consensus pattern (193 bp):
CTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCCGCCGCCA
ACACTTAACACCAATCCTAAAACTCCTTAATACTCTATCAAGTAAAACCTAAATATCATACATAC
CTCCCTCTGCCACCAACACTTAACACCAATCTTAAAACTCCTTAACACTCTATCAAGTAAAAC
Found at i:132923137 original size:113 final size:114
Alignment explanation
Indices: 132922991--132923310 Score: 427
Period size: 112 Copynumber: 2.9 Consensus size: 114
132922981 TAAAACCAAT
* * * * * *
132922991 CCTAAA-ACTCCTTAATACTTTATCAAGTGAAACCTAAATATCATGTGA-ACCTCCCTCTGTCAC
1 CCTAAATACTCCTTGATACTCTATCAAGTAAAACCTAAAGATCAT-TCACACCTCCCTCTGTCGC
132923054 CAACACTTAACACCAAT-CTTAAAACTCCTTAACACTCTATCAAGTAAAA
65 CAACACTTAACACCAATACTTAAAACTCCTTAACACTCTATCAAGTAAAA
* * * * *
132923103 CCTAAATACTCATTGATACTCTATCAAGTAAAACCTAAAGATTATTCACACCTCTCTCCGCCGCC
1 CCTAAATACTCCTTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCTGTCGCC
* *
132923168 AACACTTATCACCAATAC-TAAAACT-CTTAATACTCTATCAAGTAAAA
66 AACACTTAACACCAATACTTAAAACTCCTTAACACTCTATCAAGTAAAA
* *
132923215 CCTAAATACTCCTTGATACTCTATCAAGTAAAACCTAAAGATCACTCACACCTCCCCCTGTCGCC
1 CCTAAATACTCCTTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCTGTCGCC
* * *
132923280 AACACTTAAAACCAATCCTT-AAATTCCTTAA
66 AACACTTAACACCAATACTTAAAACTCCTTAA
132923311 TAACAATAAG
Statistics
Matches: 179, Mismatches: 24, Indels: 9
0.84 0.11 0.04
Matches are distributed among these distances:
112 106 0.59
113 72 0.40
114 1 0.01
ACGTcount: A:0.38, C:0.30, G:0.05, T:0.27
Consensus pattern (114 bp):
CCTAAATACTCCTTGATACTCTATCAAGTAAAACCTAAAGATCATTCACACCTCCCTCTGTCGCC
AACACTTAACACCAATACTTAAAACTCCTTAACACTCTATCAAGTAAAA
Found at i:132923234 original size:33 final size:31
Alignment explanation
Indices: 132923185--132923253 Score: 111
Period size: 33 Copynumber: 2.2 Consensus size: 31
132923175 ATCACCAATA
132923185 CTAAAACTCTTAATACTCTATCAAGTAAAAC
1 CTAAAACTCTTAATACTCTATCAAGTAAAAC
*
132923216 CTAAATACTCCTTGATACTCTATCAAGTAAAAC
1 CTAAA-ACT-CTTAATACTCTATCAAGTAAAAC
132923249 CTAAA
1 CTAAA
132923254 GATCACTCAC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
31 5 0.14
32 3 0.09
33 27 0.77
ACGTcount: A:0.43, C:0.23, G:0.04, T:0.29
Consensus pattern (31 bp):
CTAAAACTCTTAATACTCTATCAAGTAAAAC
Found at i:132926509 original size:3 final size:3
Alignment explanation
Indices: 132926501--132926548 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
132926491 TCTGGCCGAA
132926501 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
132926549 GAAAATTTTC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:132927676 original size:18 final size:19
Alignment explanation
Indices: 132927640--132927677 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
132927630 CCTCACGTAA
132927640 TTAAACTCTCCTAAGACTT
1 TTAAACTCTCCTAAGACTT
*
132927659 TTAAACTCT-CTTAGACTT
1 TTAAACTCTCCTAAGACTT
132927677 T
1 T
132927678 ACCTAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.42
Consensus pattern (19 bp):
TTAAACTCTCCTAAGACTT
Found at i:132946863 original size:2 final size:2
Alignment explanation
Indices: 132946856--132946882 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
132946846 TAACCTCTGC
132946856 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
132946883 AAACAAATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:132948920 original size:18 final size:20
Alignment explanation
Indices: 132948888--132948926 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
132948878 AATACTTTTA
132948888 AAAATATTTACTAAAAAAAT
1 AAAATATTTACTAAAAAAAT
*
132948908 AAAAT-TTTA-TAAAATAAT
1 AAAATATTTACTAAAAAAAT
132948926 A
1 A
132948927 TCCAAAACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 4 0.22
20 5 0.28
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAATATTTACTAAAAAAAT
Found at i:132960576 original size:18 final size:19
Alignment explanation
Indices: 132960548--132960587 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
132960538 AGGACACTCT
*
132960548 CTACTAAATCAAATAACTA
1 CTACTAAATCAAATAACAA
132960567 CTAC-AAATCAAATAACAA
1 CTACTAAATCAAATAACAA
132960585 CTA
1 CTA
132960588 TTTGACTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (19 bp):
CTACTAAATCAAATAACAA
Found at i:132961154 original size:31 final size:31
Alignment explanation
Indices: 132961117--132961179 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
132961107 TTAAGTTTAC
132961117 ATTTTAGTTATTAAACTTTAATTTGTTATAA
1 ATTTTAGTTATTAAACTTTAATTTGTTATAA
132961148 ATTTTAGTTATTAAACTTTAATTTGTTATAA
1 ATTTTAGTTATTAAACTTTAATTTGTTATAA
132961179 A
1 A
132961180 ACAATTATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.37, C:0.03, G:0.06, T:0.54
Consensus pattern (31 bp):
ATTTTAGTTATTAAACTTTAATTTGTTATAA
Found at i:132961181 original size:18 final size:18
Alignment explanation
Indices: 132961123--132961181 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 18
132961113 TTACATTTTA
132961123 GTTATTAAACTTTAATTT
1 GTTATTAAACTTTAATTT
*
132961141 GTTA-TAAA--TT--TTA
1 GTTATTAAACTTTAATTT
132961154 GTTATTAAACTTTAATTT
1 GTTATTAAACTTTAATTT
*
132961172 GTTATAAAAC
1 GTTATTAAAC
132961182 AATTATTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
13 6 0.18
14 4 0.12
15 2 0.06
16 2 0.06
17 4 0.12
18 15 0.45
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (18 bp):
GTTATTAAACTTTAATTT
Found at i:132961701 original size:21 final size:21
Alignment explanation
Indices: 132961677--132961725 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
132961667 TAATTATCAA
*
132961677 TAATAATTGAAAA-AAATTCTT
1 TAATAATT-AAAAGAAATTATT
* *
132961698 TAATTAGTAAAAGAAATTATT
1 TAATAATTAAAAGAAATTATT
132961719 TAATAAT
1 TAATAAT
132961726 ACAATTACTA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (21 bp):
TAATAATTAAAAGAAATTATT
Found at i:132962828 original size:3 final size:3
Alignment explanation
Indices: 132962815--132962877 Score: 117
Period size: 3 Copynumber: 20.7 Consensus size: 3
132962805 CTCAAAGTAA
132962815 AAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
132962861 AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AA
132962878 AGTAATGATG
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 56 0.95
4 3 0.05
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:132965128 original size:12 final size:13
Alignment explanation
Indices: 132965106--132965134 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
132965096 GAGACTAAGG
132965106 TTTCAAATTTCAA
1 TTTCAAATTTCAA
132965119 TTTC-AATTTCAA
1 TTTCAAATTTCAA
132965131 TTTC
1 TTTC
132965135 GAATATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTCAAATTTCAA
Found at i:132967488 original size:29 final size:29
Alignment explanation
Indices: 132967434--132967505 Score: 73
Period size: 29 Copynumber: 2.5 Consensus size: 29
132967424 CTTGGCACGA
132967434 ATATATTATGTT--ATAAAATATTATA-TT
1 ATAT-TTATGTTAAATAAAATATTATATTT
132967461 A-ATTAATATGTTAAATAATAAT-TTATATTT
1 ATATT--TATGTTAAATAA-AATATTATATTT
132967491 ATATTTATGTTAAAT
1 ATATTTATGTTAAAT
132967506 CAAGAATCAA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
25 1 0.03
26 2 0.05
27 7 0.18
29 19 0.50
30 6 0.16
31 3 0.08
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (29 bp):
ATATTTATGTTAAATAAAATATTATATTT
Found at i:132970356 original size:22 final size:22
Alignment explanation
Indices: 132970330--132970797 Score: 101
Period size: 23 Copynumber: 20.4 Consensus size: 22
132970320 ATCATTTCTA
*
132970330 ATATATATATATCGTATATGTTTT
1 ATATATAT-TAT-GTATATATTTT
132970354 ATATATATTATGTATATATTTT
1 ATATATATTATGTATATATTTT
132970376 -TA-ATATTATTAGTTATATATCTTT
1 ATATATATTA-T-G-TATATAT-TTT
132970400 ATACTAT-TTCATGTATATATTTT
1 ATA-TATATT-ATGTATATATTTT
* ** *
132970423 -TATGTTATCCT-TAT-TATTAT
1 ATAT-ATATTATGTATATATTTT
*
132970443 -TA-ATATTA-GTATAT-GTTT
1 ATATATATTATGTATATATTTT
132970461 -TAT-TA-TATGTATATATCTTT
1 ATATATATTATGTATATAT-TTT
132970481 A-ATATATATATGTATATA-TTT
1 ATATATAT-TATGTATATATTTT
*
132970502 ATGTAATATTAT-TA-ATAGTTGTT
1 ATAT-ATATTATGTATATA-TT-TT
* * *
132970525 TTTTAACATTAT-TAT-TATTTCT
1 ATAT-ATATTATGTATATATTT-T
* *
132970547 AATATGTATATACTATGTAAATATTTCA
1 -ATA--TATAT--TATGTATATATTT-T
*
132970575 ATACTATATTATGTATGTATTTTT
1 ATA-TATATTATGTATATA-TTTT
* * *
132970599 AACATTATATTACGTACATACTTTT
1 -ATA-TATATTATGTATATA-TTTT
132970624 AATATCATTATTATGTATATATTTT
1 -ATAT-A-TATTATGTATATATTTT
*
132970649 -TAATATATATATGTGTATA-TTT
1 AT-ATATAT-TATGTATATATTTT
*
132970671 ATGTAGTATTAT-TA-ATAGTTGTT
1 ATATA-TATTATGTATATA-TT-TT
*
132970694 -TTTAATATTAT-TAT-TATTTCTAAT
1 ATAT-ATATTATGTATATA-TT-T--T
*
132970718 ATGTATATATTATATATATATTTT
1 A--TATATATTATGTATATATTTT
* *
132970742 -CA-ATACTATGTATATACTTTTT
1 ATATATATTATGTATATA--TTTT
*
132970764 AATACTATTATTATGTTTATATTTT
1 -ATA-TA-TATTATGTATATATTTT
132970789 AATATATAT
1 -ATATATAT
132970798 ACGTATGTAT
Statistics
Matches: 337, Mismatches: 46, Indels: 123
0.67 0.09 0.24
Matches are distributed among these distances:
17 2 0.01
18 18 0.05
19 1 0.00
20 36 0.11
21 18 0.05
22 54 0.16
23 65 0.19
24 37 0.11
25 41 0.12
26 31 0.09
27 26 0.08
28 8 0.02
ACGTcount: A:0.34, C:0.05, G:0.06, T:0.55
Consensus pattern (22 bp):
ATATATATTATGTATATATTTT
Found at i:132970381 original size:24 final size:24
Alignment explanation
Indices: 132970311--132970424 Score: 91
Period size: 23 Copynumber: 4.9 Consensus size: 24
132970301 ATAGTTTTTT
* *
132970311 TATATTAT-TAT-CATTTCTAATA
1 TATATTATGTATATATTTTTAATA
*
132970333 TATATATATCGTATAT-GTTTT-ATA
1 TATAT-TAT-GTATATATTTTTAATA
132970357 TATATTATGTATATATTTTTAATA
1 TATATTATGTATATATTTTTAATA
*
132970381 T-TATTA-GTTATATATCTTT-ATA
1 TATATTATG-TATATATTTTTAATA
132970403 CTAT-TTCATGTATATATTTTTA
1 -TATATT-ATGTATATATTTTTA
132970425 TGTTATCCTT
Statistics
Matches: 74, Mismatches: 6, Indels: 21
0.73 0.06 0.21
Matches are distributed among these distances:
22 15 0.20
23 28 0.38
24 24 0.32
25 7 0.09
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.57
Consensus pattern (24 bp):
TATATTATGTATATATTTTTAATA
Found at i:132970648 original size:25 final size:25
Alignment explanation
Indices: 132970580--132970670 Score: 96
Period size: 25 Copynumber: 3.7 Consensus size: 25
132970570 TTTCAATACT
* * *
132970580 ATATTATGTATGTATTTTTAACATT
1 ATATTATGTATATATTTTTAATATC
* * *
132970605 ATATTACGTACATACTTTTAATATC
1 ATATTATGTATATATTTTTAATATC
132970630 ATTATTATGTATATATTTTTAATAT-
1 A-TATTATGTATATATTTTTAATATC
*
132970655 ATA-TATGTGTATATTT
1 ATATTATGTATATATTT
132970671 ATGTAGTATT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
23 12 0.22
24 2 0.04
25 21 0.38
26 20 0.36
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.54
Consensus pattern (25 bp):
ATATTATGTATATATTTTTAATATC
Found at i:132970757 original size:20 final size:21
Alignment explanation
Indices: 132970732--132970771 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
132970722 ATATATTATA
132970732 TATATA-TTTTCAATACTATG
1 TATATACTTTTCAATACTATG
*
132970752 TATATACTTTTTAATACTAT
1 TATATACTTTTCAATACTAT
132970772 TATTATGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TATATACTTTTCAATACTATG
Found at i:132974390 original size:21 final size:21
Alignment explanation
Indices: 132974350--132974390 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
132974340 AGGGTAATAG
*
132974350 GGTGGAGGAGGGTAAGCGCCT
1 GGTGGAGGAGGGTAACCGCCT
*
132974371 GGTGGAGGAGGGTATCCGCC
1 GGTGGAGGAGGGTAACCGCC
132974391 ATATGGGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.17, G:0.51, T:0.15
Consensus pattern (21 bp):
GGTGGAGGAGGGTAACCGCCT
Found at i:132976028 original size:45 final size:45
Alignment explanation
Indices: 132975978--132976065 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
132975968 CTATTTTTGT
*
132975978 TGTTAAAAACTGATAATTGTACGTCAACATGAAGTACATCTGATA
1 TGTTAAAAACTGATAATTGTACATCAACATGAAGTACATCTGATA
*
132976023 TGTTAAAAACTGATAATTGTACATCAACATGAATTACATCTGA
1 TGTTAAAAACTGATAATTGTACATCAACATGAAGTACATCTGA
132976066 CATGCTACAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (45 bp):
TGTTAAAAACTGATAATTGTACATCAACATGAAGTACATCTGATA
Found at i:132982650 original size:16 final size:17
Alignment explanation
Indices: 132982624--132982659 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
132982614 GCGGTGTGAA
132982624 TAAATATATAAACATAC
1 TAAATATATAAACATAC
132982641 TAAA-ATATAAACATAC
1 TAAATATATAAACATAC
132982657 TAA
1 TAA
132982660 TAATTCAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (17 bp):
TAAATATATAAACATAC
Found at i:132987955 original size:21 final size:21
Alignment explanation
Indices: 132987928--132987976 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
132987918 ACCTTTGCTA
132987928 TTTTTGTTGCTATTTTTCCA-
1 TTTTTGTTGCTATTTTTCCAC
* *
132987948 TGTTTTGTTGTTGTTTTTCCAC
1 T-TTTTGTTGCTATTTTTCCAC
132987970 TTTTTGT
1 TTTTTGT
132987977 CATTGTTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 23 0.92
22 1 0.04
ACGTcount: A:0.06, C:0.12, G:0.14, T:0.67
Consensus pattern (21 bp):
TTTTTGTTGCTATTTTTCCAC
Found at i:132987982 original size:21 final size:21
Alignment explanation
Indices: 132987940--132987985 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
132987930 TTTGTTGCTA
**
132987940 TTTTTCCATGTTTTGTTGTTG
1 TTTTTCCATGTTTTGTCATTG
132987961 TTTTTCCACT-TTTTGTCATTG
1 TTTTTCCA-TGTTTTGTCATTG
132987982 TTTT
1 TTTT
132987986 GTTATCATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.07, C:0.13, G:0.13, T:0.67
Consensus pattern (21 bp):
TTTTTCCATGTTTTGTCATTG
Found at i:132988356 original size:21 final size:21
Alignment explanation
Indices: 132988332--132988399 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
132988322 ATATTTAAAT
132988332 TTAAAAATAGTATAAACAAAC
1 TTAAAAATAGTATAAACAAAC
*** *
132988353 TTAAGCGAAA-A-TATATTTAAAT
1 TTAA---AAATAGTATAAACAAAC
132988375 TTAAAAATAGTATAAACAAAC
1 TTAAAAATAGTATAAACAAAC
132988396 TTAA
1 TTAA
132988400 GCGAGTTTGG
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
19 3 0.09
20 1 0.03
21 15 0.44
22 11 0.32
23 1 0.03
24 3 0.09
ACGTcount: A:0.57, C:0.07, G:0.06, T:0.29
Consensus pattern (21 bp):
TTAAAAATAGTATAAACAAAC
Found at i:132988378 original size:43 final size:43
Alignment explanation
Indices: 132988317--132988403 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
132988307 AATAATGAAT
132988317 AAAATATATTTAAATTTAAAAATAGTATAAACAAACTTAAGCG
1 AAAATATATTTAAATTTAAAAATAGTATAAACAAACTTAAGCG
132988360 AAAATATATTTAAATTTAAAAATAGTATAAACAAACTTAAGCG
1 AAAATATATTTAAATTTAAAAATAGTATAAACAAACTTAAGCG
132988403 A
1 A
132988404 GTTTGGATTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.30
Consensus pattern (43 bp):
AAAATATATTTAAATTTAAAAATAGTATAAACAAACTTAAGCG
Found at i:132991640 original size:60 final size:61
Alignment explanation
Indices: 132991510--132991641 Score: 160
Period size: 65 Copynumber: 2.1 Consensus size: 61
132991500 CACCTCCTCC
* *
132991510 CCCTCCTGTACCAAAATGTACACTTCCCCACCCCCACCCCCACCTCCACCTCCGCCTCCGCCT
1 CCCTCCTGTACCAAAATGTACACTTCCCCACCCCCACCCCCACCT-C-CCTCCGCCACCACCT
* * *
132991573 CCGCCTCCTGTACCAAAATGTACATTTCCCCCACCTCCACCTCCACCT-CCTCCGCCACCACCT
1 -C-CCTCCTGTACCAAAATGTACACTT-CCCCACCCCCACCCCCACCTCCCTCCGCCACCACCT
132991636 -CCTCCT
1 CCCTCCT
132991642 CCGCCTCCAT
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
60 6 0.10
63 13 0.21
64 1 0.02
65 23 0.38
66 18 0.30
ACGTcount: A:0.17, C:0.57, G:0.06, T:0.20
Consensus pattern (61 bp):
CCCTCCTGTACCAAAATGTACACTTCCCCACCCCCACCCCCACCTCCCTCCGCCACCACCT
Found at i:133003159 original size:34 final size:35
Alignment explanation
Indices: 133003116--133003181 Score: 107
Period size: 34 Copynumber: 1.9 Consensus size: 35
133003106 TTCTTTTTGC
133003116 CGTTCCAAATTCCCACC-CCTCCCCCAATTTTCCT
1 CGTTCCAAATTCCCACCTCCTCCCCCAATTTTCCT
* *
133003150 CGTTCCAAATTCCCACCTCCTTCCCGAATTTT
1 CGTTCCAAATTCCCACCTCCTCCCCCAATTTT
133003182 TCCTTTCTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.18, C:0.45, G:0.05, T:0.32
Consensus pattern (35 bp):
CGTTCCAAATTCCCACCTCCTCCCCCAATTTTCCT
Found at i:133003314 original size:21 final size:21
Alignment explanation
Indices: 133003302--133003341 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
133003292 CACGACCACA
*
133003302 GTTCCACAAGCCACAAACAAG
1 GTTCCACAAGCCACAACCAAG
*
133003323 GTTCTACAAGCCACAACCA
1 GTTCCACAAGCCACAACCA
133003342 TCGTTAGTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.35, G:0.12, T:0.12
Consensus pattern (21 bp):
GTTCCACAAGCCACAACCAAG
Found at i:133003661 original size:16 final size:16
Alignment explanation
Indices: 133003642--133003673 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
133003632 TACTAATCAA
*
133003642 AGTTTCTATGTTTCTG
1 AGTTTCCATGTTTCTG
133003658 AGTTTCCATGTTTCTG
1 AGTTTCCATGTTTCTG
133003674 CCTGTCTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.16, G:0.19, T:0.53
Consensus pattern (16 bp):
AGTTTCCATGTTTCTG
Found at i:133003850 original size:45 final size:45
Alignment explanation
Indices: 133003751--133003841 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
133003741 AATTAAATTA
** *
133003751 ACCATTATTAGCAGGTTTAGTTTCATTTAAGTCATGCATATATAT
1 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
133003796 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
1 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
133003841 A
1 A
133003842 TATATATTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (45 bp):
ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
Found at i:133003959 original size:43 final size:42
Alignment explanation
Indices: 133003912--133003992 Score: 128
Period size: 42 Copynumber: 1.9 Consensus size: 42
133003902 TAATGTTTTG
*
133003912 CTTCATTTAAGTCATGCGCATAA-TGCATATATATTCCATTTAA
1 CTTCATTTAAGTCAT--GCATAATTGCATATATATACCATTTAA
133003955 CTTCATTTAAGTCATGCATAATTGCATATATATACCAT
1 CTTCATTTAAGTCATGCATAATTGCATATATATACCAT
133003993 AATTAGCAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
41 6 0.17
42 15 0.42
43 15 0.42
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.40
Consensus pattern (42 bp):
CTTCATTTAAGTCATGCATAATTGCATATATATACCATTTAA
Found at i:133004030 original size:2 final size:2
Alignment explanation
Indices: 133004023--133004054 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
133004013 GTTAAGCCAA
*
133004023 AT AT AT AT AT TT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
133004055 TAATGCATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:133004098 original size:36 final size:36
Alignment explanation
Indices: 133004051--133004123 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
133004041 ATATATATAT
* *
133004051 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
*
133004087 ATATTAATGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
133004123 A
1 A
133004124 GTCATGCGCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.48
Consensus pattern (36 bp):
ATATTAATGCATATATATAATGTTTAGCTTCATTTA
Found at i:133004774 original size:36 final size:36
Alignment explanation
Indices: 133004727--133004800 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
133004717 TTTTATAAGT
133004727 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
1 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
133004763 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
1 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
133004799 AA
1 AA
133004801 CGCTTTAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.22, C:0.08, G:0.16, T:0.54
Consensus pattern (36 bp):
AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
Found at i:133007687 original size:21 final size:22
Alignment explanation
Indices: 133007663--133007705 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
133007653 TTACATGTAA
* *
133007663 TTATTTAG-TAAATTATATTGT
1 TTATGTAGTTAAATAATATTGT
133007684 TTATGTAGTTAAATAATATTGT
1 TTATGTAGTTAAATAATATTGT
133007706 ATTTCCTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (22 bp):
TTATGTAGTTAAATAATATTGT
Found at i:133011566 original size:12 final size:12
Alignment explanation
Indices: 133011551--133011575 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
133011541 TCATCCTCTC
133011551 CATCAGATTCAT
1 CATCAGATTCAT
133011563 CATCAGATTCAT
1 CATCAGATTCAT
133011575 C
1 C
133011576 CCTCGATCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (12 bp):
CATCAGATTCAT
Found at i:133013309 original size:9 final size:9
Alignment explanation
Indices: 133013295--133013464 Score: 80
Period size: 9 Copynumber: 18.7 Consensus size: 9
133013285 TGAGTATAAT
133013295 TAAGTTATG
1 TAAGTTATG
*
133013304 TAAGTTATAA
1 TAAGTTAT-G
* * *
133013314 TATGATATA
1 TAAGTTATG
*
133013323 T-ATTTATG
1 TAAGTTATG
133013331 T-A-TTATG
1 TAAGTTATG
133013338 TAAGTTATG
1 TAAGTTATG
*
133013347 TAAATTATG
1 TAAGTTATG
*
133013356 TACGTTATG
1 TAAGTTATG
* * *
133013365 AAATTTGATCTT
1 TAAGTT-A--TG
*
133013377 TAAATTATG
1 TAAGTTATG
133013386 TAAGTTATG
1 TAAGTTATG
*
133013395 TAAATTATG
1 TAAGTTATG
133013404 TAAGTTATG
1 TAAGTTATG
* * *
133013413 AAATTTGAACTT
1 TAAGTT--A-TG
*
133013425 TAAATTATG
1 TAAGTTATG
133013434 TAAGTTATG
1 TAAGTTATG
133013443 T-A-TTATG
1 TAAGTTATG
*
133013450 TAAATTATG
1 TAAGTTATG
*
133013459 TGAGTT
1 TAAGTT
133013465 GCTGGTGAAC
Statistics
Matches: 121, Mismatches: 29, Indels: 22
0.70 0.17 0.13
Matches are distributed among these distances:
7 12 0.10
8 8 0.07
9 81 0.67
10 8 0.07
11 2 0.02
12 10 0.08
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:133013391 original size:48 final size:48
Alignment explanation
Indices: 133013332--133013458 Score: 213
Period size: 48 Copynumber: 2.7 Consensus size: 48
133013322 ATATTTATGT
* *
133013332 ATTATGTAAGTTATGTAAATTATGTACGTTATGAAATTTGATCTTTAA
1 ATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGAACTTTAA
133013380 ATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGAACTTTAA
1 ATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGAACTTTAA
*
133013428 ATTATGTAAGTTATGT--ATTATGTAAATTATG
1 ATTATGTAAGTTATGTAAATTATGTAAGTTATG
133013459 TGAGTTGCTG
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
46 14 0.18
48 62 0.82
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (48 bp):
ATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGAACTTTAA
Found at i:133017489 original size:44 final size:45
Alignment explanation
Indices: 133017441--133017529 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 45
133017431 AATGAATTAT
*
133017441 TCCTGTCTCCAATGCCATA-TATAATATGGACTTACATGGCTCAA
1 TCCTGTCTCCAAAGCCATATTATAATATGGACTTACATGGCTCAA
*
133017485 TCCTGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 TCCTGTCTCCAAAGCCATA-TTATAATATGGACTTACATGGCTCA
133017530 TTTCTGTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 18 0.44
46 23 0.56
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (45 bp):
TCCTGTCTCCAAAGCCATATTATAATATGGACTTACATGGCTCAA
Found at i:133019865 original size:24 final size:24
Alignment explanation
Indices: 133019777--133019865 Score: 124
Period size: 24 Copynumber: 3.7 Consensus size: 24
133019767 GATTCAACTC
* * * *
133019777 CGCACACATAGTGCCAAATAATTC
1 CGCACACATAGTGCCATACAAATA
* *
133019801 CGCACACATAGTGCCTTACATATA
1 CGCACACATAGTGCCATACAAATA
133019825 CGCACACATAGTGCCATACAAATA
1 CGCACACATAGTGCCATACAAATA
133019849 CGCACACATAGTGCCAT
1 CGCACACATAGTGCCAT
133019866 TTAAATCTGC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.36, C:0.30, G:0.13, T:0.20
Consensus pattern (24 bp):
CGCACACATAGTGCCATACAAATA
Found at i:133023799 original size:23 final size:23
Alignment explanation
Indices: 133023773--133023856 Score: 64
Period size: 23 Copynumber: 3.6 Consensus size: 23
133023763 ATTTTAATAT
133023773 ATATTTATATTATATTATTTTTA
1 ATATTTATATTATATTATTTTTA
* *
133023796 ATATTTAATAATT-TAATATTTTTT
1 ATATTT-AT-ATTATATTATTTTTA
* * * *
133023820 ATAGTTATCTTAACATT-GTTTTA
1 ATATTTATATT-ATATTATTTTTA
*
133023843 ATGTTTATATTATA
1 ATATTTATATTATA
133023857 ATAGTATTAT
Statistics
Matches: 45, Mismatches: 12, Indels: 9
0.68 0.18 0.14
Matches are distributed among these distances:
22 4 0.09
23 20 0.44
24 18 0.40
25 3 0.07
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.60
Consensus pattern (23 bp):
ATATTTATATTATATTATTTTTA
Found at i:133023815 original size:32 final size:33
Alignment explanation
Indices: 133023750--133023815 Score: 84
Period size: 32 Copynumber: 2.0 Consensus size: 33
133023740 TTAGGCCTCC
*
133023750 TATATTTATTTTTATTTTAATATATATTTATAT
1 TATATTTATTTTTATTTTAATATATATTAATAT
133023783 TATA-TTATTTTTAATATTTAATA-AT-TTAATAT
1 TATATTTATTTTT-AT-TTTAATATATATTAATAT
133023815 T
1 T
133023816 TTTTATAGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
32 15 0.50
33 8 0.27
34 7 0.23
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (33 bp):
TATATTTATTTTTATTTTAATATATATTAATAT
Found at i:133028323 original size:20 final size:19
Alignment explanation
Indices: 133028294--133028346 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
133028284 AAAATTACAA
*
133028294 AAAAAATCAAATTAATTT-T
1 AAAAATTCAAATT-ATTTAT
*
133028313 CAAAAATTCAAAATATTTAT
1 -AAAAATTCAAATTATTTAT
133028333 AAAAATTTCAAATT
1 AAAAA-TTCAAATT
133028347 TATATATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 9 0.32
20 19 0.68
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAATTCAAATTATTTAT
Found at i:133030999 original size:23 final size:24
Alignment explanation
Indices: 133030959--133031005 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
133030949 AAATTTAAAA
*
133030959 TTTGTATAAAACATTTTAAAAGTT
1 TTTGTATAAAACACTTTAAAAGTT
* *
133030983 TTTGT-TAAATCACTTTATAAGTT
1 TTTGTATAAAACACTTTAAAAGTT
133031006 ATTACAGCTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.36, C:0.06, G:0.09, T:0.49
Consensus pattern (24 bp):
TTTGTATAAAACACTTTAAAAGTT
Found at i:133037752 original size:22 final size:22
Alignment explanation
Indices: 133037701--133037761 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
133037691 ATAAGTAAAT
* *
133037701 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
133037722 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
133037744 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
133037762 GATATAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:133037859 original size:3 final size:3
Alignment explanation
Indices: 133037853--133037982 Score: 88
Period size: 3 Copynumber: 42.7 Consensus size: 3
133037843 AAAGTAGTGC
* *
133037853 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-C TAT TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
133037900 GTTA TAA TGAA -AA TAA TGA TAA TGA TGA T-A TAT TAGA TAA TAA TAGT
1 -TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TA-A
* *
133037947 TAA -AA TAA TAA GTAA CAA TAA TAAA TTA TAA TAA TA
1 TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TAA TAA TA
133037983 GTGATGAGAA
Statistics
Matches: 101, Mismatches: 16, Indels: 20
0.74 0.12 0.15
Matches are distributed among these distances:
2 7 0.07
3 80 0.79
4 14 0.14
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:133038001 original size:16 final size:16
Alignment explanation
Indices: 133037982--133038013 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
133037972 TTATAATAAT
133037982 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
133037998 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
133038014 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:133038147 original size:16 final size:15
Alignment explanation
Indices: 133038118--133038160 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
133038108 TATACGTATG
*
133038118 AAAAATAATGATAGT
1 AAAAATAATAATAGT
133038133 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
133038149 AATAATAATAAT
1 AAAAATAATAAT
133038161 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:133038382 original size:3 final size:3
Alignment explanation
Indices: 133038368--133038409 Score: 75
Period size: 3 Copynumber: 13.7 Consensus size: 3
133038358 AAATATACAC
133038368 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
133038410 TTAAAATGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:133038830 original size:31 final size:30
Alignment explanation
Indices: 133038792--133038867 Score: 120
Period size: 28 Copynumber: 2.6 Consensus size: 30
133038782 GATTTTTTGT
133038792 TCTTGAATCTCAAAAAAAAAGAAAAATCTCC
1 TCTTGAATCTCAAAAAAAAA-AAAAATCTCC
*
133038823 TCTTGAATCTC--AAAAAAAAAAAATCTCT
1 TCTTGAATCTCAAAAAAAAAAAAAATCTCC
133038851 TCTTGAATCTCAAAAAA
1 TCTTGAATCTCAAAAAA
133038868 TTTCTTCTCT
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
28 20 0.48
29 7 0.17
30 4 0.10
31 11 0.26
ACGTcount: A:0.50, C:0.18, G:0.05, T:0.26
Consensus pattern (30 bp):
TCTTGAATCTCAAAAAAAAAAAAAATCTCC
Found at i:133040182 original size:3 final size:3
Alignment explanation
Indices: 133040174--133040211 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
133040164 AACACCCATC
133040174 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
133040212 CATTTTTCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:133044454 original size:47 final size:49
Alignment explanation
Indices: 133044332--133044511 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 49
133044322 TGTAACCCGC
* * * *
133044332 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
133044378 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
133044428 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
133044472 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
133044512 TCAACCATCC
Statistics
Matches: 114, Mismatches: 7, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:133044500 original size:94 final size:93
Alignment explanation
Indices: 133044340--133044511 Score: 299
Period size: 94 Copynumber: 1.8 Consensus size: 93
133044330 GCCCATAAGT
* * *
133044340 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
133044405 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
133044433 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTCA
133044498 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
133044512 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 30 0.41
94 44 0.59
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:133044963 original size:30 final size:30
Alignment explanation
Indices: 133044929--133044988 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
133044919 CCTTAATACG
133044929 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
133044959 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
133044989 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:133052011 original size:47 final size:49
Alignment explanation
Indices: 133051889--133052068 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 49
133051879 TGTAACCCGC
* * * *
133051889 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
133051935 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
133051985 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
133052029 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
133052069 TCAACCATCC
Statistics
Matches: 114, Mismatches: 7, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:133052057 original size:94 final size:93
Alignment explanation
Indices: 133051897--133052068 Score: 299
Period size: 94 Copynumber: 1.8 Consensus size: 93
133051887 GCCCATAAGT
* * *
133051897 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
133051962 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
133051990 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTCA
133052055 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
133052069 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 30 0.41
94 44 0.59
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:133052520 original size:30 final size:30
Alignment explanation
Indices: 133052486--133052545 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
133052476 CCTTAATACG
133052486 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
133052516 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
133052546 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:133067401 original size:23 final size:25
Alignment explanation
Indices: 133067375--133067469 Score: 77
Period size: 22 Copynumber: 4.2 Consensus size: 25
133067365 TAATACGATT
133067375 TTAATATAAATA-T-TAAAATAATA
1 TTAATATAAATATTATAAAATAATA
133067398 TTAA-A-AAA-ATTATATAAA-AATA
1 TTAATATAAATATTATA-AAATAATA
* *
133067420 ATAA-ATAAAAAATTATAAAATAATA
1 TTAATAT-AAATATTATAAAATAATA
133067445 -TAATATAAATATT-TAAAA-AA-A
1 TTAATATAAATATTATAAAATAATA
133067466 TTAA
1 TTAA
133067470 AAATAATATG
Statistics
Matches: 61, Mismatches: 2, Indels: 19
0.74 0.02 0.23
Matches are distributed among these distances:
20 1 0.02
21 5 0.08
22 16 0.26
23 12 0.20
24 15 0.25
25 12 0.20
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (25 bp):
TTAATATAAATATTATAAAATAATA
Found at i:133067406 original size:14 final size:13
Alignment explanation
Indices: 133067389--133067453 Score: 57
Period size: 14 Copynumber: 5.0 Consensus size: 13
133067379 TATAAATATT
133067389 AAAATAATATTAAA
1 AAAATAATA-TAAA
*
133067403 AAAATTATATAAA
1 AAAATAATATAAA
133067416 AATAATAA-AT-AA
1 AA-AATAATATAAA
133067428 AAAAT--TATAAA
1 AAAATAATATAAA
133067439 ATAATATAATATAAA
1 A-AA-ATAATATAAA
133067454 TATTTAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 13
0.74 0.04 0.23
Matches are distributed among these distances:
10 2 0.05
11 6 0.14
12 6 0.14
13 10 0.24
14 12 0.29
15 6 0.14
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
AAAATAATATAAA
Found at i:133067419 original size:33 final size:32
Alignment explanation
Indices: 133067376--133067478 Score: 93
Period size: 33 Copynumber: 3.0 Consensus size: 32
133067366 AATACGATTT
*
133067376 TAATATAAATATTAAAATAATATTAAAAA-AAT-
1 TAATAAAAATATTAAAA-AA-ATTAAAAATAATA
*
133067408 TATATAAAAATAATAAATAAAAAATTATAAAATAATA
1 TA-ATAAAAAT-AT-TA-AAAAAATTA-AAAATAATA
*
133067445 TAATATAAATATTTAAAAAAATTAAAAATAATA
1 TAATAAAAATA-TTAAAAAAATTAAAAATAATA
133067478 T
1 T
133067479 GAACGAACCT
Statistics
Matches: 59, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
32 2 0.03
33 17 0.29
34 15 0.25
35 9 0.15
36 14 0.24
37 2 0.03
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (32 bp):
TAATAAAAATATTAAAAAAATTAAAAATAATA
Found at i:133067464 original size:25 final size:23
Alignment explanation
Indices: 133067389--133067464 Score: 75
Period size: 25 Copynumber: 3.2 Consensus size: 23
133067379 TATAAATATT
133067389 AAAATAATATTAA-AAAAATTATATA
1 AAAATAATA-TAATAAAAATT-TA-A
* *
133067414 AAAATAATA-AATAAAAAATTAT
1 AAAATAATATAATAAAAATTTAA
133067436 AAAATAATATAATATAAATATTTAA
1 AAAATAATATAATA-AAA-ATTTAA
133067461 AAAA
1 AAAA
133067465 ATTAAAAATA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
22 9 0.21
23 8 0.19
24 9 0.21
25 17 0.40
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (23 bp):
AAAATAATATAATAAAAATTTAA
Found at i:133075200 original size:37 final size:37
Alignment explanation
Indices: 133075156--133075230 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
133075146 TATAAGGACT
133075156 AAAAATGATAGAAATTAAAATTCAGTAGTAATTGAGA
1 AAAAATGATAGAAATTAAAATTCAGTAGTAATTGAGA
133075193 AAAAATGATAGAAATTAAAATTCAGTAGTAATTGAGA
1 AAAAATGATAGAAATTAAAATTCAGTAGTAATTGAGA
133075230 A
1 A
133075231 TTTAACCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.55, C:0.03, G:0.16, T:0.27
Consensus pattern (37 bp):
AAAAATGATAGAAATTAAAATTCAGTAGTAATTGAGA
Found at i:133075286 original size:28 final size:28
Alignment explanation
Indices: 133075243--133075296 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
133075233 TAACCTTTTC
* *
133075243 GGGTTACTTACTGTATCGGGAATGGCAA
1 GGGTTACTTACAGTATCAGGAATGGCAA
133075271 GGGTTACTTACAGTATCAGGAATGGC
1 GGGTTACTTACAGTATCAGGAATGGC
133075297 CTTTTTGACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGGTTACTTACAGTATCAGGAATGGCAA
Found at i:133089960 original size:140 final size:140
Alignment explanation
Indices: 133089708--133090195 Score: 861
Period size: 140 Copynumber: 3.5 Consensus size: 140
133089698 GGAAACTCAA
**
133089708 CTCATATTGCGAGAGACGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
133089773 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
133089838 TCAAAATCAG
131 TCAAAATCAG
* *
133089848 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTTTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
133089913 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
133089978 TCAAAATCAG
131 TCAAAATCAG
*
133089988 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
133090053 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
133090118 TCAAAATCAG
131 TCAAAATCAG
*
133090128 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GATTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GTCAC--GCTGAGGTATTTTCAATTTCTGT-TT
133090192 TCAA
62 TCAA
133090196 AAAAAAAATT
Statistics
Matches: 334, Mismatches: 10, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
139 1 0.00
140 305 0.91
142 22 0.07
143 6 0.02
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:133090051 original size:13 final size:13
Alignment explanation
Indices: 133090033--133090066 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
133090023 CGCTGAGGTA
*
133090033 TTTTCAATTTTTG
1 TTTTCAATTTATG
133090046 TTTTCAATTTATG
1 TTTTCAATTTATG
133090059 TTGTTCAA
1 TT-TTCAA
133090067 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.09, G:0.09, T:0.62
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:133090313 original size:72 final size:72
Alignment explanation
Indices: 133090115--133090340 Score: 283
Period size: 72 Copynumber: 3.0 Consensus size: 72
133090105 AATTTCTACT
* ** ** * * *
133090115 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGATTCACATGCTGAGGTATTTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC-A-AGACACGTTGAGGTAATTT
133090179 CAATTTCTG
64 CAATTTCTG
133090188 TCTTTCAAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 T-TTTC------AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
133090253 AATTTCAGTTTCTG
59 AATTTCAATTTCTG
133090267 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
133090332 ATTTCTG
66 ATTTCTG
133090339 TT
1 TT
133090341 CAAAATGAGT
Statistics
Matches: 135, Mismatches: 10, Indels: 17
0.83 0.06 0.10
Matches are distributed among these distances:
72 68 0.50
73 1 0.01
74 4 0.03
78 4 0.03
79 23 0.17
80 5 0.04
81 30 0.22
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
ATTTCTG
Found at i:133090351 original size:49 final size:49
Alignment explanation
Indices: 133090294--133090389 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
133090284 ATATTGCGAG
*
133090294 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
133090343 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
133090390 TTCAAAATTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:133090436 original size:121 final size:121
Alignment explanation
Indices: 133090222--133090461 Score: 426
Period size: 121 Copynumber: 2.0 Consensus size: 121
133090212 ATATTGCGAG
* *
133090222 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAGTTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
*
133090287 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
133090343 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * *
133090408 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
133090462 TTTCAAAAAA
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
121 113 1.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:133090594 original size:75 final size:75
Alignment explanation
Indices: 133090343--133090694 Score: 444
Period size: 75 Copynumber: 4.7 Consensus size: 75
133090333 TTTCTGTTCA
* *
133090343 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
133090405 ATATTGCGAG
66 ATATTGCGAG
* *
133090415 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAATCAAC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTC--AAAAAAATCAAC
*
133090480 TCATATTGTGAG
64 TCATATTGCGAG
* *
133090492 AAATGAGTTGAGCCTTAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
*
133090557 ATATTGCAAG
66 ATATTGCGAG
** * * *
133090567 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGTC-AAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* *
133090630 GTATTGTGAG
66 ATATTGCGAG
*** * * *
133090640 AGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
133090695 TTTCTGCCTT
Statistics
Matches: 247, Mismatches: 24, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
72 42 0.17
73 43 0.17
74 4 0.02
75 84 0.34
76 4 0.02
77 70 0.28
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (75 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGCGAG
Found at i:133090622 original size:152 final size:149
Alignment explanation
Indices: 133090343--133090694 Score: 460
Period size: 152 Copynumber: 2.4 Consensus size: 149
133090333 TTTCTGTTCA
* *
133090343 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* * * * *
133090405 ATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAA
66 ATATTGCAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTC---A
133090470 AAAAATCAACTCATATTGTGAG
128 AAAAATCAACTCATATTGTGAG
* *
133090492 AAATGAGTTGAGCCTTAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
** *
133090557 ATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGTCAAAA
66 ATATTGCAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAA
*
133090621 AATCAACTCGTATTGTGAG
131 AATCAACTCATATTGTGAG
*** * * *
133090640 AGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
133090695 TTTCTGCCTT
Statistics
Matches: 177, Mismatches: 21, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
148 36 0.20
149 42 0.24
150 36 0.20
151 4 0.02
152 59 0.33
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (149 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGCAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAA
AATCAACTCATATTGTGAG
Found at i:133090771 original size:95 final size:95
Alignment explanation
Indices: 133090617--133090789 Score: 249
Period size: 95 Copynumber: 1.8 Consensus size: 95
133090607 TTCTGTTGTC
* * *
133090617 AAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAAT
*
133090682 TTCCGTTTTTCAATTTCTGCCTTTCAAAAA
66 TTCCGTCTTTCAATTTCTGCCTTTCAAAAA
* * * *
133090712 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCAA
*
133090776 TTTCTGTCTTTCAA
65 TTTCCGTCTTTCAA
133090790 AAAAATCAAC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
94 2 0.03
95 66 0.97
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (95 bp):
AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAAT
TTCCGTCTTTCAATTTCTGCCTTTCAAAAA
Done.