Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 438 of 438
Found at i:135307673 original size:15 final size:15
Alignment explanation
Indices: 135307637--135307715 Score: 58
Period size: 14 Copynumber: 5.4 Consensus size: 15
135307627 ATAGTTTAAG
*
135307637 GTTTTATGGTTT-TA
1 GTTTTAGGGTTTATA
*
135307651 GATTTAGGGTTTATA
1 GTTTTAGGGTTTATA
*
135307666 GTTTTAGGTTTTATA
1 GTTTTAGGGTTTATA
* *
135307681 -ATTTAGGGTCTAGT-
1 GTTTTAGGGTTTA-TA
*
135307695 GATATTA-GGTTTATA
1 G-TTTTAGGGTTTATA
135307710 GTTTTA
1 GTTTTA
135307716 TGATTTAGGA
Statistics
Matches: 49, Mismatches: 11, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
14 24 0.49
15 22 0.45
16 3 0.06
ACGTcount: A:0.23, C:0.01, G:0.23, T:0.53
Consensus pattern (15 bp):
GTTTTAGGGTTTATA
Found at i:135308775 original size:13 final size:11
Alignment explanation
Indices: 135308746--135308774 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
135308736 TTTGGTGATG
135308746 TTCTCTCAATT
1 TTCTCTCAATT
135308757 TTCTCTCAATT
1 TTCTCTCAATT
135308768 TTCTCTC
1 TTCTCTC
135308775 TTTTGCCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.14, C:0.31, G:0.00, T:0.55
Consensus pattern (11 bp):
TTCTCTCAATT
Found at i:135312679 original size:107 final size:108
Alignment explanation
Indices: 135312567--135312781 Score: 396
Period size: 107 Copynumber: 2.0 Consensus size: 108
135312557 TTAAACAAAA
*
135312567 TATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTATAATA
1 TATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTATAACA
135312632 AAATTGTATTAAAATTTTTGTTAATTACTCT-ATAAAATTTTT
66 AAATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTT
* *
135312674 TATTAGTTTAACAAAACAATGATATGTTAAGTTGGAATAAGTTTTAAATAATAAAATTTCTAACA
1 TATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTATAACA
135312739 AAATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTT
66 AAATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTT
135312782 GACATGTTTT
Statistics
Matches: 104, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
107 93 0.89
108 11 0.11
ACGTcount: A:0.44, C:0.05, G:0.08, T:0.43
Consensus pattern (108 bp):
TATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTATAACA
AAATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTT
Found at i:135323130 original size:21 final size:23
Alignment explanation
Indices: 135323106--135323151 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
135323096 ATGAAAATTG
135323106 TCTCGA-TC-GGTGTGCATAATA
1 TCTCGATTCTGGTGTGCATAATA
135323127 TCTCGATTCTTGGTGTGCATAATA
1 TCTCGATTC-TGGTGTGCATAATA
135323151 T
1 T
135323152 TGCTCATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.27
22 2 0.09
24 14 0.64
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.39
Consensus pattern (23 bp):
TCTCGATTCTGGTGTGCATAATA
Found at i:135323647 original size:5 final size:5
Alignment explanation
Indices: 135323637--135323690 Score: 108
Period size: 5 Copynumber: 10.8 Consensus size: 5
135323627 ATATTTCTCT
135323637 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
135323687 TTAT
1 TTAT
135323691 GCATGCACTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 49 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:135338648 original size:2 final size:2
Alignment explanation
Indices: 135338641--135338665 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
135338631 AAAGCAATAA
135338641 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
135338666 ACATAAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:135340342 original size:13 final size:13
Alignment explanation
Indices: 135340324--135340353 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
135340314 TTAAAGATGA
135340324 TAAAATTTTCGTC
1 TAAAATTTTCGTC
*
135340337 TAAAATTTTCGTT
1 TAAAATTTTCGTC
135340350 TAAA
1 TAAA
135340354 TTCTTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.47
Consensus pattern (13 bp):
TAAAATTTTCGTC
Found at i:135353329 original size:21 final size:21
Alignment explanation
Indices: 135353290--135353330 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
135353280 ATAATTGTTT
135353290 TAAATTTTTATTATATAAAAG
1 TAAATTTTTATTATATAAAAG
*
135353311 TAAATATTTTA-TATTTAAAA
1 TAAAT-TTTTATTATATAAAA
135353331 TAATGAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TAAATTTTTATTATATAAAAG
Found at i:135354295 original size:13 final size:13
Alignment explanation
Indices: 135354277--135354302 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
135354267 ATATAAAGAA
135354277 ATATGTATTTATT
1 ATATGTATTTATT
135354290 ATATGTATTTATT
1 ATATGTATTTATT
135354303 TAATTGTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
ATATGTATTTATT
Found at i:135355391 original size:17 final size:16
Alignment explanation
Indices: 135355360--135355393 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
135355350 AAACTTTTTA
*
135355360 TATTTTTTTTGAATTT
1 TATTTTTTTTAAATTT
135355376 TATTTTTTTTAAAATTT
1 TATTTTTTTT-AAATTT
135355393 T
1 T
135355394 TATAAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (16 bp):
TATTTTTTTTAAATTT
Found at i:135355522 original size:25 final size:23
Alignment explanation
Indices: 135355468--135355525 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
135355458 CACACCAATA
*
135355468 TTTTTTAAAAAAAATTATCACTC
1 TTTTTTAAAAAAAATAATCACTC
** *
135355491 TCGTTTAAAAAAAATAAATTGACTC
1 TTTTTTAAAAAAAAT-AA-TCACTC
135355516 TTTTTTAAAA
1 TTTTTTAAAA
135355526 TTTAATGTTC
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
23 13 0.48
24 1 0.04
25 13 0.48
ACGTcount: A:0.45, C:0.10, G:0.03, T:0.41
Consensus pattern (23 bp):
TTTTTTAAAAAAAATAATCACTC
Found at i:135355968 original size:12 final size:12
Alignment explanation
Indices: 135355951--135355984 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
135355941 CGGCCCACTC
135355951 ATATTAATTTTT
1 ATATTAATTTTT
*
135355963 ATATTATTTTTT
1 ATATTAATTTTT
135355975 ATA-TAATTTT
1 ATATTAATTTT
135355985 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:135363224 original size:2 final size:2
Alignment explanation
Indices: 135363217--135363246 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
135363207 TAACAATAAA
135363217 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
135363247 TGTCATCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:135363667 original size:15 final size:16
Alignment explanation
Indices: 135363635--135363668 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
135363625 TAAAATTATT
*
135363635 TTATAAAAAAAATGAA
1 TTATAAAAAAAATCAA
135363651 TTATAAAAAAAA-CAA
1 TTATAAAAAAAATCAA
135363666 TTA
1 TTA
135363669 GAAGTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (16 bp):
TTATAAAAAAAATCAA
Found at i:135364270 original size:41 final size:39
Alignment explanation
Indices: 135364223--135364301 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 39
135364213 CTAATATTTT
* *
135364223 ACAAAAATAATCAATTTATTTTTTTATCTAAAAATACTAAG
1 ACAAAAATAATC-A-TAATATTTTTATCTAAAAATACTAAG
** *
135364264 ACAAAAATTTTCATAATATTTTTATCTAAAAATTCTAA
1 ACAAAAATAATCATAATATTTTTATCTAAAAATACTAA
135364302 ATAAAACACA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
39 22 0.67
40 1 0.03
41 10 0.30
ACGTcount: A:0.48, C:0.10, G:0.01, T:0.41
Consensus pattern (39 bp):
ACAAAAATAATCATAATATTTTTATCTAAAAATACTAAG
Found at i:135367714 original size:14 final size:14
Alignment explanation
Indices: 135367688--135367717 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
135367678 TAAATTGTAG
135367688 ATTTAATATTTTTA
1 ATTTAATATTTTTA
135367702 ATTTATATATTTTTA
1 ATTTA-ATATTTTTA
135367717 A
1 A
135367718 AATTTGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
ATTTAATATTTTTA
Found at i:135373441 original size:45 final size:44
Alignment explanation
Indices: 135373391--135373477 Score: 113
Period size: 45 Copynumber: 2.0 Consensus size: 44
135373381 ATATCCTCCC
135373391 ATATCTGAAAATAGA-AAAATAAAAAATCAAACTAAAGGGAAAATA
1 ATATCTGAAAATAGATAAAA-AAAAAA-CAAACTAAAGGGAAAATA
** * *
135373436 ATATCTTTAATTTGATAAAAAAAAAACAAACTAAAGGGAAAA
1 ATATCTGAAAATAGATAAAAAAAAAACAAACTAAAGGGAAAA
135373478 AATGAGGAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
44 16 0.43
45 17 0.46
46 4 0.11
ACGTcount: A:0.62, C:0.07, G:0.10, T:0.21
Consensus pattern (44 bp):
ATATCTGAAAATAGATAAAAAAAAAACAAACTAAAGGGAAAATA
Found at i:135382042 original size:39 final size:40
Alignment explanation
Indices: 135381999--135382078 Score: 153
Period size: 39 Copynumber: 2.0 Consensus size: 40
135381989 AAAAACAACA
135381999 TGAGAATTCATATTATACATGTAAATGGC-TCAGAGAGGT
1 TGAGAATTCATATTATACATGTAAATGGCATCAGAGAGGT
135382038 TGAGAATTCATATTATACATGTAAATGGCATCAGAGAGGT
1 TGAGAATTCATATTATACATGTAAATGGCATCAGAGAGGT
135382078 T
1 T
135382079 TAAAAATGTA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 29 0.73
40 11 0.28
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (40 bp):
TGAGAATTCATATTATACATGTAAATGGCATCAGAGAGGT
Found at i:135384784 original size:39 final size:40
Alignment explanation
Indices: 135384730--135384807 Score: 124
Period size: 41 Copynumber: 1.9 Consensus size: 40
135384720 GAGAAACACG
135384730 TAACATTCAGAAAAAC-AGATTACACAA-CTACAATCAACA
1 TAACATTCAGAAAAACAAGATTACACAATC-ACAATCAACA
135384769 TAACATTCAGAAAAACAAAGATTACACAATCACAATCAA
1 TAACATTCAGAAAAAC-AAGATTACACAATCACAATCAA
135384808 TCCAGGTCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
39 16 0.44
41 19 0.53
42 1 0.03
ACGTcount: A:0.55, C:0.22, G:0.05, T:0.18
Consensus pattern (40 bp):
TAACATTCAGAAAAACAAGATTACACAATCACAATCAACA
Found at i:135387102 original size:13 final size:13
Alignment explanation
Indices: 135387073--135387116 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
135387063 TAAATGCCAA
135387073 TTTTCATTTTCTT-C
1 TTTT-ATTTT-TTGC
135387087 TTTTATTTTTTGC
1 TTTTATTTTTTGC
*
135387100 TTTTGTTTTTTGC
1 TTTTATTTTTTGC
135387113 TTTT
1 TTTT
135387117 GTTTAAAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 2 0.07
13 22 0.79
14 4 0.14
ACGTcount: A:0.05, C:0.11, G:0.07, T:0.77
Consensus pattern (13 bp):
TTTTATTTTTTGC
Found at i:135387117 original size:13 final size:13
Alignment explanation
Indices: 135387086--135387120 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
135387076 TCATTTTCTT
*
135387086 CTTTTATTTTTTG
1 CTTTTGTTTTTTG
135387099 CTTTTGTTTTTTG
1 CTTTTGTTTTTTG
135387112 CTTTTGTTT
1 CTTTTGTTT
135387121 AAAGTATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.03, C:0.09, G:0.11, T:0.77
Consensus pattern (13 bp):
CTTTTGTTTTTTG
Found at i:135395600 original size:18 final size:17
Alignment explanation
Indices: 135395577--135395610 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
135395567 TAATCATCGA
135395577 TTTTTATTGAATTTTAAT
1 TTTTTATT-AATTTTAAT
135395595 TTTTTATTAATTTTAA
1 TTTTTATTAATTTTAA
135395611 ACAATTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (17 bp):
TTTTTATTAATTTTAAT
Found at i:135400238 original size:61 final size:62
Alignment explanation
Indices: 135400125--135400243 Score: 177
Period size: 61 Copynumber: 1.9 Consensus size: 62
135400115 AAAAATCACT
* * * *
135400125 ACCACCACCATCGCGAAGCATCAGTTTCAAGAGCACAGAAACCAGTCCTTTCTAATTAGATC
1 ACCACCACCATCGCAAAGCACCAGTTTCAAGAGCACAAAAACCAGTCATTTCTAATTAGATC
* *
135400187 ACCACCACCATTGCAAAGCACCAG-TTCATGAGCACAAAAACCAGTCATTTCTAATTA
1 ACCACCACCATCGCAAAGCACCAGTTTCAAGAGCACAAAAACCAGTCATTTCTAATTA
135400244 TAATCTGGAT
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
61 30 0.59
62 21 0.41
ACGTcount: A:0.36, C:0.30, G:0.13, T:0.21
Consensus pattern (62 bp):
ACCACCACCATCGCAAAGCACCAGTTTCAAGAGCACAAAAACCAGTCATTTCTAATTAGATC
Found at i:135401094 original size:21 final size:23
Alignment explanation
Indices: 135401068--135401120 Score: 74
Period size: 21 Copynumber: 2.4 Consensus size: 23
135401058 TGGAATAGAG
135401068 TTAACATTTACTATTTAA-AAA-
1 TTAACATTTACTATTTAACAAAC
*
135401089 TTAACATTTATTATTTAACAAAC
1 TTAACATTTACTATTTAACAAAC
*
135401112 TTAATATTT
1 TTAACATTT
135401121 TTAAAGTCCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 17 0.61
22 3 0.11
23 8 0.29
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.47
Consensus pattern (23 bp):
TTAACATTTACTATTTAACAAAC
Found at i:135404927 original size:4 final size:4
Alignment explanation
Indices: 135404912--135404970 Score: 77
Period size: 4 Copynumber: 15.0 Consensus size: 4
135404902 TGCCATCACA
* *
135404912 ACAT ATAT ACAT ACAT -CAA ACAT CACA- ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT -ACAT ACAT ACAT ACAT ACAT ACAT
135404959 ACAT ACAT ACAT
1 ACAT ACAT ACAT
135404971 CAAACACCAG
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
3 5 0.10
4 40 0.83
5 3 0.06
ACGTcount: A:0.51, C:0.25, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:135416710 original size:25 final size:25
Alignment explanation
Indices: 135416676--135416726 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
135416666 ATCTTAGGTC
135416676 ATATGTCTTATATAAATATATAATA
1 ATATGTCTTATATAAATATATAATA
135416701 ATATGTCTTATATAAATATATAATA
1 ATATGTCTTATATAAATATATAATA
135416726 A
1 A
135416727 AAAAATACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (25 bp):
ATATGTCTTATATAAATATATAATA
Found at i:135418411 original size:16 final size:16
Alignment explanation
Indices: 135418389--135418445 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
135418379 AAGAGAATAT
135418389 ATTTTCTTTCTTTCTA
1 ATTTTCTTTCTTTCTA
* * *
135418405 TTTTTCTACTCATTC-A
1 ATTTTCT-TTCTTTCTA
*
135418421 ATTTTCTATCTTTCTA
1 ATTTTCTTTCTTTCTA
135418437 ATTTTCTTT
1 ATTTTCTTT
135418446 AATGTAAAAC
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
15 5 0.16
16 22 0.69
17 5 0.16
ACGTcount: A:0.16, C:0.19, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTTCTTTCTTTCTA
Found at i:135420602 original size:6 final size:6
Alignment explanation
Indices: 135420585--135420614 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
135420575 TAAAATGAAA
*
135420585 TACTCC TTCTCC TACTCC TACTCC TACTCC
1 TACTCC TACTCC TACTCC TACTCC TACTCC
135420615 CTCTCATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.13, C:0.50, G:0.00, T:0.37
Consensus pattern (6 bp):
TACTCC
Found at i:135420602 original size:12 final size:12
Alignment explanation
Indices: 135420585--135420619 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
135420575 TAAAATGAAA
135420585 TACTCCTTCTCC
1 TACTCCTTCTCC
*
135420597 TACTCCTACTCC
1 TACTCCTTCTCC
*
135420609 TACTCCCTCTC
1 TACTCCTTCTC
135420620 ATTATATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.11, C:0.51, G:0.00, T:0.37
Consensus pattern (12 bp):
TACTCCTTCTCC
Found at i:135423620 original size:28 final size:29
Alignment explanation
Indices: 135423576--135423633 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 29
135423566 GATTAAATAA
*
135423576 GTAAAACTTGGGATCCCATTAATTTAGTT
1 GTAAAACTTGGGATCCCAATAATTTAGTT
*
135423605 GTAAAA-TTGGGATCCCAATAGTTTAGTT
1 GTAAAACTTGGGATCCCAATAATTTAGTT
135423633 G
1 G
135423634 CTATGGAGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 21 0.78
29 6 0.22
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (29 bp):
GTAAAACTTGGGATCCCAATAATTTAGTT
Found at i:135423946 original size:57 final size:57
Alignment explanation
Indices: 135423858--135423972 Score: 194
Period size: 57 Copynumber: 2.0 Consensus size: 57
135423848 TCGCTTTGAA
* * *
135423858 ATGAGAAAAATGATTCGTTGTTTAAACTATAATTGCTGTTACGATCAATGCTAGGAT
1 ATGAGAAAAATGATTCGTTGTTTAAACTATAATGGCTGTTACGATCAACGCAAGGAT
*
135423915 ATGAGAAAAATGATTCGTTGTTTATACTATAATGGCTGTTACGATCAACGCAAGGAT
1 ATGAGAAAAATGATTCGTTGTTTAAACTATAATGGCTGTTACGATCAACGCAAGGAT
135423972 A
1 A
135423973 GGTCTTTAAC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (57 bp):
ATGAGAAAAATGATTCGTTGTTTAAACTATAATGGCTGTTACGATCAACGCAAGGAT
Found at i:135428065 original size:12 final size:12
Alignment explanation
Indices: 135428048--135428082 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
135428038 CAAACGATCA
* *
135428048 AAGAAATGTGAG
1 AAGAAATATAAG
135428060 AAGAAATATAAG
1 AAGAAATATAAG
135428072 AAGAAATATAA
1 AAGAAATATAA
135428083 TAATTGCTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (12 bp):
AAGAAATATAAG
Found at i:135442591 original size:15 final size:15
Alignment explanation
Indices: 135442555--135442591 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
135442545 AGATTTAATA
135442555 ATTATATTTTAATTT
1 ATTATATTTTAATTT
135442570 ATT-TATTTTAAATTT
1 ATTATATTTT-AATTT
135442585 -TTATATT
1 ATTATATT
135442592 CTTCTAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
ATTATATTTTAATTT
Found at i:135459869 original size:16 final size:16
Alignment explanation
Indices: 135459850--135459881 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
135459840 AAGAAAGAAA
135459850 AATAAAAGCTGGGTTT
1 AATAAAAGCTGGGTTT
135459866 AATAAAAGCTGGGTTT
1 AATAAAAGCTGGGTTT
135459882 TTATGAGGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.31
Consensus pattern (16 bp):
AATAAAAGCTGGGTTT
Found at i:135489080 original size:13 final size:13
Alignment explanation
Indices: 135489058--135489095 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
135489048 ATTTGTATTT
135489058 TAAAATTATAAAA
1 TAAAATTATAAAA
* *
135489071 TTAGATTAT-AAA
1 TAAAATTATAAAA
135489083 TAAAATTATAAAA
1 TAAAATTATAAAA
135489096 CTATTTGATT
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (13 bp):
TAAAATTATAAAA
Found at i:135489336 original size:104 final size:104
Alignment explanation
Indices: 135489156--135489348 Score: 273
Period size: 104 Copynumber: 1.9 Consensus size: 104
135489146 AAATTCTTTT
* *
135489156 GAAGATACTTTAATTTCATCAAAAAATCATACCATCATTTGATATAACAATAAATTAATTGCTTG
1 GAAGATACGTTAATTTCATCAAAAAATCATACCACCATTTGATATAACAATAAATTAATTGCTTG
*
135489221 ATTTGTAAGAAATATTTAGTAATAGGGACAAACTCTATG
66 ATTAGTAAGAAATATTTAGTAATAGGGACAAACTCTATG
** * *
135489260 GAAGATACGTTAATTTCATCAAAAAATCA-ATGGACCATTTGAT-TCAATAATAAATTCATTGCT
1 GAAGATACGTTAATTTCATCAAAAAATCATA-CCACCATTTGATAT-AACAATAAATTAATTGCT
* *
135489323 TGATTAGTAAGAAATCTTTCGTAATA
64 TGATTAGTAAGAAATATTTAGTAATA
135489349 AGGCAGGTAG
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
103 2 0.03
104 76 0.97
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (104 bp):
GAAGATACGTTAATTTCATCAAAAAATCATACCACCATTTGATATAACAATAAATTAATTGCTTG
ATTAGTAAGAAATATTTAGTAATAGGGACAAACTCTATG
Found at i:135495178 original size:24 final size:24
Alignment explanation
Indices: 135495146--135495194 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
135495136 TAACACAACT
135495146 CTCTCTTAAACTGTTACGTTATTA
1 CTCTCTTAAACTGTTACGTTATTA
135495170 CTCTCTTAAACTGTTACGTTATTA
1 CTCTCTTAAACTGTTACGTTATTA
135495194 C
1 C
135495195 ATAATTTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.22, G:0.08, T:0.45
Consensus pattern (24 bp):
CTCTCTTAAACTGTTACGTTATTA
Found at i:135510228 original size:16 final size:16
Alignment explanation
Indices: 135510209--135510242 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
135510199 AAATTAGTAA
135510209 ATTAAAAA-ATTATATT
1 ATTAAAAATATTAT-TT
135510225 ATTAAAAATATTATTT
1 ATTAAAAATATTATTT
135510241 AT
1 AT
135510243 ATATGTTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTAAAAATATTATTT
Found at i:135510385 original size:24 final size:25
Alignment explanation
Indices: 135510332--135510388 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
135510322 ATACAATTAC
* *
135510332 TAATTTTTAATAATAATAATAGATT
1 TAATTTTTAATAAGAAGAATAGATT
*
135510357 AAATTTTTAAT-AGAAGAATTA-ATT
1 TAATTTTTAATAAGAAGAA-TAGATT
135510381 TAATTTTT
1 TAATTTTT
135510389 CATTTAACGG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 15 0.56
25 12 0.44
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (25 bp):
TAATTTTTAATAAGAAGAATAGATT
Found at i:135511404 original size:115 final size:116
Alignment explanation
Indices: 135511201--135511433 Score: 333
Period size: 115 Copynumber: 2.0 Consensus size: 116
135511191 AAGTTTTCAT
* ** * *
135511201 GTGACTATTGTGAGAATACTTTTAAGTAGAAAATCGTGCAACAATTATATTTATGTAGCGCGACG
1 GTGACTATTGTGACAATACTTTTAAGTAGAAAATCACGCAACAATTACATTCATGTAGCGCGACG
*
135511266 ATTCTATTGTTCACATCTCTCTTGCTATTTATTTATTTGGTTAAAAAAAAG
66 ATTCTATTATTCACATCTCTCTTGCTATTTATTTATTTGGTTAAAAAAAAG
* *
135511317 GTGACTATTGTGACAATAC-TTTAAGTAGAAAATCACGCGACAATTACATTCATGTAGTGCGACG
1 GTGACTATTGTGACAATACTTTTAAGTAGAAAATCACGCAACAATTACATTCATGTAGCGCGACG
* * * * * *
135511381 ATTTTATTATTCACATTTTTCTTGTTGTTTATTTATTTGGTTAAGAAAAAG
66 ATTCTATTATTCACATCTCTCTTGCTATTTATTTATTTGGTTAAAAAAAAG
135511432 GT
1 GT
135511434 AAAGCACTAA
Statistics
Matches: 103, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
115 85 0.83
116 18 0.17
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.39
Consensus pattern (116 bp):
GTGACTATTGTGACAATACTTTTAAGTAGAAAATCACGCAACAATTACATTCATGTAGCGCGACG
ATTCTATTATTCACATCTCTCTTGCTATTTATTTATTTGGTTAAAAAAAAG
Found at i:135517364 original size:47 final size:49
Alignment explanation
Indices: 135517242--135517421 Score: 191
Period size: 47 Copynumber: 3.8 Consensus size: 49
135517232 TGTAACCCGC
* * * *
135517242 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
* *
135517288 CCATAAGTGAAATCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
135517338 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
135517382 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
135517422 TCAACCATCC
Statistics
Matches: 112, Mismatches: 9, Indels: 22
0.78 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 36 0.32
47 57 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:135517410 original size:94 final size:93
Alignment explanation
Indices: 135517250--135517421 Score: 290
Period size: 94 Copynumber: 1.8 Consensus size: 93
135517240 GCCCATAAGT
* * *
135517250 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAAATCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAAATCGGACTCAACTCAA
135517315 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
135517343 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAAATCGGACTCAACTCA
135517408 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
135517422 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
93 30 0.41
94 43 0.59
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAAATCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:135518010 original size:20 final size:18
Alignment explanation
Indices: 135517976--135518012 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
135517966 GCAACTCATA
135517976 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
135517994 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
135518013 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:135521584 original size:47 final size:49
Alignment explanation
Indices: 135521462--135521641 Score: 227
Period size: 47 Copynumber: 3.8 Consensus size: 49
135521452 TGTAACCCGC
* * *
135521462 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
135521508 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
135521558 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
135521602 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
135521642 TCAACCATTC
Statistics
Matches: 116, Mismatches: 5, Indels: 22
0.81 0.03 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 60 0.52
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (49 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:135521629 original size:94 final size:93
Alignment explanation
Indices: 135521469--135521641 Score: 301
Period size: 94 Copynumber: 1.8 Consensus size: 93
135521459 CGCCCATAAG
* * *
135521469 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
135521534 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
135521562 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTC
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTC
135521627 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
135521642 TCAACCATTC
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 31 0.41
94 44 0.59
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:135531577 original size:19 final size:19
Alignment explanation
Indices: 135531536--135531579 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
135531526 TTTATTTTTT
* * *
135531536 TTTAAATTATAAAAATTTA
1 TTTAAAATAAAAAAAATTA
135531555 -TTAAAATAAAAAAAATTA
1 TTTAAAATAAAAAAAATTA
135531573 TTTAAAA
1 TTTAAAA
135531580 CTTTTTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TTTAAAATAAAAAAAATTA
Found at i:135532038 original size:27 final size:28
Alignment explanation
Indices: 135532000--135532076 Score: 70
Period size: 27 Copynumber: 2.8 Consensus size: 28
135531990 ATAATTTACA
*
135532000 ATTTTAATATTTTTA-ATAATTAAATAT
1 ATTTTAATATTTTTATATAATTAAAAAT
* *
135532027 ATTTTACA-ATTTTTATGTATTTAAAAAT
1 ATTTTA-ATATTTTTATATAATTAAAAAT
*
135532055 ATTTTTTATGATTTTTA-ATAAT
1 A-TTTTAAT-ATTTTTATATAAT
135532077 ATTTTCATAA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
27 13 0.33
28 12 0.31
29 7 0.18
30 7 0.18
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (28 bp):
ATTTTAATATTTTTATATAATTAAAAAT
Found at i:135532039 original size:35 final size:39
Alignment explanation
Indices: 135531953--135532039 Score: 101
Period size: 35 Copynumber: 2.3 Consensus size: 39
135531943 TTATAACTTT
* *
135531953 TTTTATAATTTTAAAATATTTTTAACAACATTTAATAATA
1 TTTTACAATTTT-AAATATTTTTAACAACATTAAATAATA
* *
135531993 ATTTACAATTTT-AATATTTTTAA-TA-ATTAAAT-ATA
1 TTTTACAATTTTAAATATTTTTAACAACATTAAATAATA
135532028 TTTTACAATTTT
1 TTTTACAATTTT
135532040 TATGTATTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
35 14 0.33
36 6 0.14
37 1 0.02
38 11 0.26
40 10 0.24
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.53
Consensus pattern (39 bp):
TTTTACAATTTTAAATATTTTTAACAACATTAAATAATA
Found at i:135532062 original size:21 final size:22
Alignment explanation
Indices: 135532036--135532081 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
135532026 TATTTTACAA
135532036 TTTTTATG-TATTTAAAAATAT
1 TTTTTATGATATTTAAAAATAT
* *
135532057 TTTTTATGATTTTTAATAATAT
1 TTTTTATGATATTTAAAAATAT
135532079 TTT
1 TTT
135532082 CATAATTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (22 bp):
TTTTTATGATATTTAAAAATAT
Found at i:135532068 original size:10 final size:10
Alignment explanation
Indices: 135532055--135532104 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
135532045 ATTTAAAAAT
*
135532055 ATTTTTTATG
1 ATTTTTTATA
*
135532065 ATTTTTAATA
1 ATTTTTTATA
*
135532075 ATATTTTCATA
1 AT-TTTTTATA
*
135532086 ATTGTTTATA
1 ATTTTTTATA
135532096 ATTTTTTAT
1 ATTTTTTAT
135532105 TTGGTCAACA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
10 24 0.73
11 9 0.27
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (10 bp):
ATTTTTTATA
Found at i:135532093 original size:22 final size:21
Alignment explanation
Indices: 135532046--135532102 Score: 53
Period size: 21 Copynumber: 2.7 Consensus size: 21
135532036 TTTTTATGTA
* * *
135532046 TTTAAAAATATTTTTTATGATT
1 TTTAATAATA-TTTTCATAATT
135532068 TTTAATAATATTTTCATAATT
1 TTTAATAATATTTTCATAATT
*
135532089 GTTT-ATAATTTTTT
1 -TTTAATAATATTTT
135532103 ATTTGGTCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 18 0.60
22 12 0.40
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (21 bp):
TTTAATAATATTTTCATAATT
Found at i:135535573 original size:25 final size:25
Alignment explanation
Indices: 135535539--135535593 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
135535529 CATCAGCCCT
*
135535539 CAACGGTCAACAATAAATGCAAAAA
1 CAACAGTCAACAATAAATGCAAAAA
135535564 CAACAGTCAACAATAAATGCAAAAA
1 CAACAGTCAACAATAAATGCAAAAA
135535589 CAACA
1 CAACA
135535594 AAAACATTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.58, C:0.22, G:0.09, T:0.11
Consensus pattern (25 bp):
CAACAGTCAACAATAAATGCAAAAA
Found at i:135537582 original size:47 final size:47
Alignment explanation
Indices: 135537528--135537622 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
135537518 AAGTATGTTT
135537528 ATTTATTTTGTTCCATTAGTTTAATATGTTTATTAAATATAGTTTTG
1 ATTTATTTTGTTCCATTAGTTTAATATGTTTATTAAATATAGTTTTG
135537575 ATTTATTTTGTTCCATTAGTTTAATATGTTTATTAAATATAGTTTTG
1 ATTTATTTTGTTCCATTAGTTTAATATGTTTATTAAATATAGTTTTG
135537622 A
1 A
135537623 AGTTTGAGAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.28, C:0.04, G:0.11, T:0.57
Consensus pattern (47 bp):
ATTTATTTTGTTCCATTAGTTTAATATGTTTATTAAATATAGTTTTG
Found at i:135549490 original size:5 final size:5
Alignment explanation
Indices: 135549455--135549489 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
135549445 GTTTTGGTAG
*
135549455 ATCTC ATCTC ATCTC ATCTC ATCTC ATCTC TTCTC
1 ATCTC ATCTC ATCTC ATCTC ATCTC ATCTC ATCTC
135549490 TGTATTAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.17, C:0.40, G:0.00, T:0.43
Consensus pattern (5 bp):
ATCTC
Found at i:135549768 original size:4 final size:4
Alignment explanation
Indices: 135549759--135549804 Score: 65
Period size: 4 Copynumber: 11.5 Consensus size: 4
135549749 TTTCAAATGC
* * *
135549759 TATG TATG TATG TATG TATG TACG TATG CATG CATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA
135549805 ATAGAAAGCG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.26, C:0.07, G:0.24, T:0.43
Consensus pattern (4 bp):
TATG
Found at i:135551079 original size:6 final size:6
Alignment explanation
Indices: 135551068--135551113 Score: 69
Period size: 6 Copynumber: 8.0 Consensus size: 6
135551058 AACGCCGTAT
*
135551068 CTTTTG CTTTTG CTTTTG CTTTTG CTTTTT CTTTT- CTTTT- CTTTTG
1 CTTTTG CTTTTG CTTTTG CTTTTG CTTTTG CTTTTG CTTTTG CTTTTG
135551114 ATAAAGCAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
5 10 0.26
6 28 0.74
ACGTcount: A:0.00, C:0.17, G:0.11, T:0.72
Consensus pattern (6 bp):
CTTTTG
Found at i:135572191 original size:46 final size:46
Alignment explanation
Indices: 135572138--135572313 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
135572128 TATTTGGGCA
135572138 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
135572184 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* *
135572231 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
135572277 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
135572314 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:135572293 original size:93 final size:93
Alignment explanation
Indices: 135572134--135572305 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
135572124 GGGATATTTG
* *
135572134 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
135572199 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
135572227 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
135572292 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
135572306 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:135575277 original size:15 final size:15
Alignment explanation
Indices: 135575257--135575325 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
135575247 GTATCTTGGG
135575257 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
135575272 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
135575287 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
135575302 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
135575317 TTTCTTTAT
1 TTTCTTTAT
135575326 TCGGTTTCTT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:135575326 original size:30 final size:30
Alignment explanation
Indices: 135575248--135575334 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
135575238 CATAGTATCG
* * * * *
135575248 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGGTTTCTC
135575278 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGGTTTCTC
135575308 TATCTTGGATTTCTTTATTC--GGTTTCT
1 TATCTTGGATTTCTTTATTCTGGGTTTCT
135575335 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
28 7 0.14
29 1 0.02
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGGTTTCTC
Found at i:135577764 original size:46 final size:46
Alignment explanation
Indices: 135577714--135577889 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
135577704 TATTTGGGCA
135577714 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
135577760 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* *
135577807 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
135577853 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
135577890 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:135577869 original size:93 final size:93
Alignment explanation
Indices: 135577710--135577881 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
135577700 TGGATATTTG
* *
135577710 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
135577775 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
135577803 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
135577868 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
135577882 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:135580827 original size:35 final size:35
Alignment explanation
Indices: 135580777--135580843 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 35
135580767 AGTGCCACGA
**
135580777 TTCACAACTTAGTATGGTTAATACCATACCTATGT
1 TTCACAACTTAGTATGGGAAATACCATACCTATGT
* *
135580812 TTCACAACTTGGTATGGGAAATACTATACCTA
1 TTCACAACTTAGTATGGGAAATACCATACCTA
135580844 CATATTATAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.34
Consensus pattern (35 bp):
TTCACAACTTAGTATGGGAAATACCATACCTATGT
Found at i:135580876 original size:35 final size:34
Alignment explanation
Indices: 135580823--135580948 Score: 153
Period size: 35 Copynumber: 3.6 Consensus size: 34
135580813 TCACAACTTG
* * *
135580823 GTATGGGAAATACTATACCTACATATTATAGCTCG
1 GTAT-GGAAATACCATACCTACATATCATAGCTCA
* *
135580858 GTTTGGAGGATACCATACCTACATATCATAGCTCA
1 GTATGGA-AATACCATACCTACATATCATAGCTCA
* * *
135580893 ATATGGAAATACCATACCTACGTATCATATCTCA
1 GTATGGAAATACCATACCTACATATCATAGCTCA
135580927 GTATGGATAATACCATACCTAC
1 GTATGGA-AATACCATACCTAC
135580949 GTGTCATAAC
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
34 33 0.42
35 45 0.58
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.29
Consensus pattern (34 bp):
GTATGGAAATACCATACCTACATATCATAGCTCA
Found at i:135580949 original size:35 final size:34
Alignment explanation
Indices: 135580787--135580956 Score: 151
Period size: 35 Copynumber: 4.9 Consensus size: 34
135580777 TTCACAACTT
* * * * * *
135580787 AGTATGGTTAATACCATACCTATGTTTCACAACTT
1 AGTATGG-AAATACCATACCTACGTATCATAGCTC
* * * *
135580822 GGTATGGGAAATACTATACCTACATATTATAGCTC
1 AGTAT-GGAAATACCATACCTACGTATCATAGCTC
* * * *
135580857 GGTTTGGAGGATACCATACCTACATATCATAGCTC
1 AGTATGGA-AATACCATACCTACGTATCATAGCTC
* *
135580892 AATATGGAAATACCATACCTACGTATCATATCTC
1 AGTATGGAAATACCATACCTACGTATCATAGCTC
*
135580926 AGTATGGATAATACCATACCTACGTGTCATA
1 AGTATGGA-AATACCATACCTACGTATCATA
135580957 ACTTTTCCAT
Statistics
Matches: 110, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
34 33 0.30
35 75 0.68
36 2 0.02
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.31
Consensus pattern (34 bp):
AGTATGGAAATACCATACCTACGTATCATAGCTC
Found at i:135580956 original size:69 final size:70
Alignment explanation
Indices: 135580787--135580959 Score: 177
Period size: 69 Copynumber: 2.5 Consensus size: 70
135580777 TTCACAACTT
* * * * *** * *
135580787 AGTATGGTTAATACCATACCTATGTTTCACAACTTGGTATGGGAAATACTATACCTACATATTAT
1 AGTATGGATAATACCATACCTACGTATCATAACTCAATATGGGAAATACCATACCTACATATCAT
135580852 AGCTC
66 AGCTC
* * ** * * *
135580857 GGTTTGGAGGATACCATACCTACATATCATAGCTCAATAT-GGAAATACCATACCTACGTATCAT
1 AGTATGGATAATACCATACCTACGTATCATAACTCAATATGGGAAATACCATACCTACATATCAT
*
135580921 ATCTC
66 AGCTC
*
135580926 AGTATGGATAATACCATACCTACGTGTCATAACT
1 AGTATGGATAATACCATACCTACGTATCATAACT
135580960 TTTCCATGGA
Statistics
Matches: 79, Mismatches: 24, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
69 52 0.66
70 27 0.34
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (70 bp):
AGTATGGATAATACCATACCTACGTATCATAACTCAATATGGGAAATACCATACCTACATATCAT
AGCTC
Found at i:135582660 original size:23 final size:24
Alignment explanation
Indices: 135582633--135582681 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
135582623 GTTCAATAAT
*
135582633 AAATTAT-ACATATTAAAATAAAA
1 AAATTATAAAATATTAAAATAAAA
135582656 AAATTATAAAAAATATTAAAATAAAA
1 AAATTAT--AAAATATTAAAATAAAA
135582682 TTTTAGTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 7 0.32
26 15 0.68
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (24 bp):
AAATTATAAAATATTAAAATAAAA
Found at i:135585551 original size:19 final size:19
Alignment explanation
Indices: 135585527--135585564 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
135585517 TTTAGTGTTT
*
135585527 GTATCTAATATATTGTTCA
1 GTATCTAATATATTATTCA
135585546 GTATCTAATATATTATTCA
1 GTATCTAATATATTATTCA
135585565 TTATTTATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.08, T:0.47
Consensus pattern (19 bp):
GTATCTAATATATTATTCA
Found at i:135592017 original size:19 final size:19
Alignment explanation
Indices: 135591993--135592031 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
135591983 TTTACTTATC
135591993 ATCCAAAGTTTAAGAAATT
1 ATCCAAAGTTTAAGAAATT
135592012 ATCCAAAGTTTAAGAAATT
1 ATCCAAAGTTTAAGAAATT
135592031 A
1 A
135592032 CAGTTTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (19 bp):
ATCCAAAGTTTAAGAAATT
Found at i:135598861 original size:24 final size:26
Alignment explanation
Indices: 135598811--135598862 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
135598801 TTTTATATAT
* * *
135598811 TATATTGTTTTAAATTGTCTTAGATA
1 TATATTATTTTAAATTATCTTACATA
135598837 TATATTATTTTAAATTAT-TT-CATA
1 TATATTATTTTAAATTATCTTACATA
135598861 TA
1 TA
135598863 CTTTAAATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 5 0.22
25 2 0.09
26 16 0.70
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.56
Consensus pattern (26 bp):
TATATTATTTTAAATTATCTTACATA
Found at i:135601569 original size:361 final size:361
Alignment explanation
Indices: 135600905--135601627 Score: 1428
Period size: 361 Copynumber: 2.0 Consensus size: 361
135600895 TACCCTAGTA
135600905 GGTGCTTATTTACTCTTTATTTGCTTTGAATTTTATTCTTTGTATATAATACTAACTTGTGGTGT
1 GGTGCTTATTTACTCTTTATTTGCTTTGAATTTTATTCTTTGTATATAATACTAACTTGTGGTGT
135600970 TTTGATTGTTTTCGCATGGCATCTTATCATAAAAGGGTGTTGATTTACGTTCGGTTACTAAATAG
66 TTTGATTGTTTTCGCATGGCATCTTATCATAAAAGGGTGTTGATTTACGTTCGGTTACTAAATAG
135601035 AAGAGTTTAGCATGGAAAAAGGATTCCTTGATAAAGTGGAGGATAATGCGGCCGTCCGAGTGTGG
131 AAGAGTTTAGCATGGAAAAAGGATTCCTTGATAAAGTGGAGGATAATGCGGCCGTCCGAGTGTGG
*
135601100 TCCGAGAGAACGCAACAACAGAAAAGAGATAGTTTGACCGAGGGATATGAACCGGAGTTGTGGGA
196 TCCGAGAGAACGCAACAACAGAAAAGAGATAGTTTGAACGAGGGATATGAACCGGAGTTGTGGGA
135601165 TTTCACTCGCATCAATGTAACTCAGAATGACCTGCAAGAGTTAAGGGATATATGGAATAGTTGGA
261 TTTCACTCGCATCAATGTAACTCAGAATGACCTGCAAGAGTTAAGGGATATATGGAATAGTTGGA
135601230 ATGGCGAAGTCAAGCAACTCTTTTATTGTACCTACG
326 ATGGCGAAGTCAAGCAACTCTTTTATTGTACCTACG
135601266 GGTGCTTATTTACTCTTTATTTGCTTTGAATTTTATTCTTTGTATATAATACTAACTTGTGGTGT
1 GGTGCTTATTTACTCTTTATTTGCTTTGAATTTTATTCTTTGTATATAATACTAACTTGTGGTGT
135601331 TTTGATTGTTTTCGCATGGCATCTTATCATAAAAGGGTGTTGATTTACGTTCGGTTACTAAATAG
66 TTTGATTGTTTTCGCATGGCATCTTATCATAAAAGGGTGTTGATTTACGTTCGGTTACTAAATAG
135601396 AAGAGTTTAGCATGGAAAAAGGATTCCTTGATAAAGTGGAGGATAATGCGGCCGTCCGAGTGTGG
131 AAGAGTTTAGCATGGAAAAAGGATTCCTTGATAAAGTGGAGGATAATGCGGCCGTCCGAGTGTGG
*
135601461 TCCTAGAGAACGCAACAACAGAAAAGAGATAGTTTGAACGAGGGATATGAACCGGAGTTGTGGGA
196 TCCGAGAGAACGCAACAACAGAAAAGAGATAGTTTGAACGAGGGATATGAACCGGAGTTGTGGGA
135601526 TTTCACTCGCATCAATGTAACTCAGAATGACCTGCAAGAGTTAAGGGATATATGGAATAGTTGGA
261 TTTCACTCGCATCAATGTAACTCAGAATGACCTGCAAGAGTTAAGGGATATATGGAATAGTTGGA
135601591 ATGGCGAAGTCAAGCAACTCTTTTATTGTACCTACG
326 ATGGCGAAGTCAAGCAACTCTTTTATTGTACCTACG
135601627 G
1 G
135601628 CGACCTACCC
Statistics
Matches: 360, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
361 360 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (361 bp):
GGTGCTTATTTACTCTTTATTTGCTTTGAATTTTATTCTTTGTATATAATACTAACTTGTGGTGT
TTTGATTGTTTTCGCATGGCATCTTATCATAAAAGGGTGTTGATTTACGTTCGGTTACTAAATAG
AAGAGTTTAGCATGGAAAAAGGATTCCTTGATAAAGTGGAGGATAATGCGGCCGTCCGAGTGTGG
TCCGAGAGAACGCAACAACAGAAAAGAGATAGTTTGAACGAGGGATATGAACCGGAGTTGTGGGA
TTTCACTCGCATCAATGTAACTCAGAATGACCTGCAAGAGTTAAGGGATATATGGAATAGTTGGA
ATGGCGAAGTCAAGCAACTCTTTTATTGTACCTACG
Found at i:135603605 original size:19 final size:20
Alignment explanation
Indices: 135603578--135603620 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
135603568 TCTTTTTGCA
* *
135603578 TTCATTCATTTGCATTACAT
1 TTCATTCATGTGCATTAAAT
135603598 TTCA-TCATGTGCATTAAAT
1 TTCATTCATGTGCATTAAAT
135603617 TTCA
1 TTCA
135603621 CGAAAAGACC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.47
Consensus pattern (20 bp):
TTCATTCATGTGCATTAAAT
Found at i:135611384 original size:47 final size:49
Alignment explanation
Indices: 135611264--135611442 Score: 191
Period size: 47 Copynumber: 3.8 Consensus size: 49
135611254 TGTAACCCGC
* * * *
135611264 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-G--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
135611309 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
135611359 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
135611403 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
135611443 TCAACCATTC
Statistics
Matches: 113, Mismatches: 7, Indels: 23
0.79 0.05 0.16
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 34 0.30
46 3 0.03
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:135611431 original size:94 final size:92
Alignment explanation
Indices: 135611272--135611442 Score: 297
Period size: 94 Copynumber: 1.8 Consensus size: 92
135611262 GCCCATAAGT
* *
135611272 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
135611337 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
*
135611364 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATT-CACATCCATAAGTGAACTCGGACTCAACTCA
135611429 ACGAGTTCGGATGC
64 ACGAGTTCGGATGC
135611443 TCAACCATTC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 27 0.36
93 3 0.04
94 44 0.59
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:135614910 original size:44 final size:44
Alignment explanation
Indices: 135614808--135614968 Score: 184
Period size: 46 Copynumber: 3.6 Consensus size: 44
135614798 GTCGATGCCG
* * *
135614808 TGTCCCAGACAGGTCTTACACT-GACACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTAG-CACATCT---CGTAGCCGACGCA
135614854 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
* * *
135614898 TGTCCCAGACATGTCTGACACTGGCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC-A-CATCTCGTA-GCCGACGCA
135614944 TGTCCCAGACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
135614969 CCTCGTCTCA
Statistics
Matches: 102, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
43 3 0.03
44 31 0.30
45 2 0.02
46 65 0.64
47 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
Found at i:135614985 original size:46 final size:43
Alignment explanation
Indices: 135614851--135615013 Score: 166
Period size: 46 Copynumber: 3.6 Consensus size: 43
135614841 CCGTGCTGAC
*
135614851 GCATGTCCCAGACATGTCTTACACTAGCACATCTCGT-AGCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCTC-TCAGCCGAT
* * *
135614895 GCATGTCCCAGACATGTCTGACACTGGCTATCATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATC-TCTC-A-GCCGAT
*
135614941 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATC-TCTC-A-GCCGAT
* *
135614987 GCCATGTCTCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
135615014 GGCACACAAA
Statistics
Matches: 100, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
43 4 0.04
44 28 0.28
45 1 0.01
46 45 0.45
47 12 0.12
48 10 0.10
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.26
Consensus pattern (43 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCTCTCAGCCGAT
Found at i:135617563 original size:47 final size:49
Alignment explanation
Indices: 135617441--135617620 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 49
135617431 TGTAACCCGC
* * * *
135617441 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
135617487 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
135617537 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
135617581 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
135617621 TCAACCATTC
Statistics
Matches: 114, Mismatches: 7, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:135617609 original size:94 final size:93
Alignment explanation
Indices: 135617449--135617620 Score: 299
Period size: 94 Copynumber: 1.8 Consensus size: 93
135617439 GCCCATAAGT
* * *
135617449 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
135617514 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
135617542 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTCA
135617607 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
135617621 TCAACCATTC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 30 0.41
94 44 0.59
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:135620824 original size:47 final size:49
Alignment explanation
Indices: 135620702--135620881 Score: 209
Period size: 47 Copynumber: 3.8 Consensus size: 49
135620692 TGTAACCCGC
* * *
135620702 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
135620748 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
135620798 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
135620842 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
135620882 TCAACCATTC
Statistics
Matches: 115, Mismatches: 6, Indels: 22
0.80 0.04 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 58 0.50
48 3 0.03
49 2 0.02
50 4 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:135620870 original size:94 final size:93
Alignment explanation
Indices: 135620710--135620881 Score: 308
Period size: 94 Copynumber: 1.8 Consensus size: 93
135620700 GCCCATAAGT
* *
135620710 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
135620775 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
135620803 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTCA
135620868 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
135620882 TCAACCATTC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
93 30 0.40
94 45 0.60
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:135625803 original size:44 final size:45
Alignment explanation
Indices: 135625708--135625841 Score: 144
Period size: 44 Copynumber: 3.0 Consensus size: 45
135625698 ACAGGACAGA
* * *
135625708 ACAGAAATGAGCCATGTAAGCCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
135625754 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
135625798 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
135625842 CAGGATAATA
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 36 0.49
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:135627051 original size:23 final size:23
Alignment explanation
Indices: 135627021--135627067 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
135627011 AGATTAAGTT
135627021 TAGTAATGCCTCGTGCTCGATTC
1 TAGTAATGCCTCGTGCTCGATTC
135627044 TAGTAATGCCTCGTGCTCGATTC
1 TAGTAATGCCTCGTGCTCGATTC
135627067 T
1 T
135627068 GGAAACAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.36
Consensus pattern (23 bp):
TAGTAATGCCTCGTGCTCGATTC
Found at i:135633162 original size:46 final size:44
Alignment explanation
Indices: 135633103--135633217 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
135633093 ACAGGACAGA
* *
135633103 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
135633149 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
135633193 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
135633218 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:135633198 original size:44 final size:45
Alignment explanation
Indices: 135633103--135633236 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
135633093 ACAGGACAGA
* *
135633103 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
135633149 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
135633193 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
135633237 CAGGATATAT
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:135634448 original size:22 final size:23
Alignment explanation
Indices: 135634417--135634460 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
135634407 TAAGTTTAGT
135634417 AATGCCTCGTGCTCGATTCTGGC
1 AATGCCTCGTGCTCGATTCTGGC
135634440 AATG-CTCGTGCTCGATTCTGG
1 AATGCCTCGTGCTCGATTCTGG
135634461 AAACAGTCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.14, C:0.27, G:0.27, T:0.32
Consensus pattern (23 bp):
AATGCCTCGTGCTCGATTCTGGC
Found at i:135636104 original size:44 final size:45
Alignment explanation
Indices: 135636014--135636142 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
135636004 GACAGAACGA
*
135636014 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
135636060 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
135636104 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
135636143 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:135637344 original size:22 final size:22
Alignment explanation
Indices: 135637316--135637361 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
135637306 TAAGTTTAGT
135637316 AATGCCTCGTGCTCGATTCTGG
1 AATGCCTCGTGCTCGATTCTGG
135637338 AATGCCTCGTGCTCGATTCTGG
1 AATGCCTCGTGCTCGATTCTGG
135637360 AA
1 AA
135637362 ACAGTCTCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.17, C:0.26, G:0.26, T:0.30
Consensus pattern (22 bp):
AATGCCTCGTGCTCGATTCTGG
Found at i:135643486 original size:44 final size:45
Alignment explanation
Indices: 135643391--135643524 Score: 144
Period size: 44 Copynumber: 3.0 Consensus size: 45
135643381 ACAGGACAGA
* * *
135643391 ACAGAAATGAGCCATGTAAGCCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
135643437 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
135643481 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
135643525 CAGGATAATA
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 36 0.49
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:135644749 original size:32 final size:32
Alignment explanation
Indices: 135644713--135644773 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
135644703 TAAGTTTAGT
135644713 AATGCCTCGTGCTCGATTCTGGAAACAGTAGA
1 AATGCCTCGTGCTCGATTCTGGAAACAGTAGA
135644745 AATGCCTCGTGCTCGATTCTGGAAACAGT
1 AATGCCTCGTGCTCGATTCTGGAAACAGT
135644774 CTCGGGTAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (32 bp):
AATGCCTCGTGCTCGATTCTGGAAACAGTAGA
Found at i:135654269 original size:3 final size:3
Alignment explanation
Indices: 135654261--135654294 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
135654251 ATGACCTGAC
135654261 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
135654295 CAACATCATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:135657657 original size:3 final size:3
Alignment explanation
Indices: 135657632--135657695 Score: 85
Period size: 3 Copynumber: 21.7 Consensus size: 3
135657622 ACAAACAACG
* * * *
135657632 ATA AAA ATA AAA ATA AAA ATA ATA ATA ACA ATA ATA ATA A-A ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
135657679 ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA AT
135657696 GATAGTAAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
2 2 0.04
3 50 0.96
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:135657677 original size:20 final size:20
Alignment explanation
Indices: 135657652--135657691 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
135657642 AAATAAAAAT
135657652 AATAATAACAATAATAATAA
1 AATAATAACAATAATAATAA
*
135657672 AATAATAATAATAATAATAA
1 AATAATAACAATAATAATAA
135657692 TAATGATAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (20 bp):
AATAATAACAATAATAATAA
Found at i:135658176 original size:38 final size:37
Alignment explanation
Indices: 135658090--135658179 Score: 137
Period size: 38 Copynumber: 2.4 Consensus size: 37
135658080 AATAAATATA
135658090 AAAATAAAATAAAATATGAGGGGTTGAATTTAAAAAG
1 AAAATAAAATAAAATATGAGGGGTTGAATTTAAAAAG
*
135658127 AGCAAGT-AAATAAAATATGAGGGGTTGAATTTAAAAAG
1 A--AAATAAAATAAAATATGAGGGGTTGAATTTAAAAAG
135658165 AAAATAAAAATAAAA
1 AAAAT-AAAATAAAA
135658180 CCAGAATATT
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
36 3 0.06
37 1 0.02
38 40 0.85
39 3 0.06
ACGTcount: A:0.59, C:0.01, G:0.18, T:0.22
Consensus pattern (37 bp):
AAAATAAAATAAAATATGAGGGGTTGAATTTAAAAAG
Found at i:135658664 original size:26 final size:26
Alignment explanation
Indices: 135658623--135658683 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
135658613 CCAAAAAACT
* * *
135658623 TTTTTTATTTCATTACCAGCTTTCCC
1 TTTTTTATTCCATTACCAACTCTCCC
*
135658649 TTTTTTATTCCCTTACCAACTCTCCC
1 TTTTTTATTCCATTACCAACTCTCCC
135658675 TTTTTTATT
1 TTTTTTATT
135658684 TTTTATTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.15, C:0.28, G:0.02, T:0.56
Consensus pattern (26 bp):
TTTTTTATTCCATTACCAACTCTCCC
Found at i:135660171 original size:86 final size:86
Alignment explanation
Indices: 135660051--135660534 Score: 742
Period size: 86 Copynumber: 5.6 Consensus size: 86
135660041 AAGATTTGTA
* *
135660051 AATTCAGCCTGTTACCCTACTGCTTAGGGG-TTAAGGCTT-TTCG-CTTTCGATCTGTTTCC-CT
1 AATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG-TTCTTCGTC-TTCGATCTG-CTCCACT
* * *
135660112 ACTGCTTAGGGAGATAAGACCTGT
63 ACTGCTCAGGGAGATAAGATCTGC
* *
135660136 AATTCAACTTGTTACCCTACTACTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACT
1 AATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACT
* *
135660201 GCTTAGGGAGATAGGATCTGC
66 GCTCAGGGAGATAAGATCTGC
* *
135660222 AATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCCGCTCCACTATT
1 AATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACT
* *
135660287 GCTCAGGGAGATGAGATCTGT
66 GCTCAGGGAGATAAGATCTGC
* *
135660308 AATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCCGCTCCACTATT
1 AATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACT
*
135660373 GCTCAGGGAGATGAGATCTGC
66 GCTCAGGGAGATAAGATCTGC
* *
135660394 AATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCCGCTCCACTATT
1 AATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACT
*
135660459 GCTCAGGGAGATGAGATCTGC
66 GCTCAGGGAGATAAGATCTGC
135660480 AATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTG
1 AATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTG
135660535 TTACCATTCT
Statistics
Matches: 378, Mismatches: 17, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
85 32 0.08
86 345 0.91
87 1 0.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (86 bp):
AATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACT
GCTCAGGGAGATAAGATCTGC
Found at i:135668558 original size:19 final size:20
Alignment explanation
Indices: 135668530--135668571 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
135668520 GTCTTTTCGC
* *
135668530 GAAATTTAATGCACATG-AT
1 GAAATGTAATGCAAATGAAT
135668549 GAAATGTAATGCAAATGAAT
1 GAAATGTAATGCAAATGAAT
135668569 GAA
1 GAA
135668572 TGCAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.48, C:0.07, G:0.19, T:0.26
Consensus pattern (20 bp):
GAAATGTAATGCAAATGAAT
Found at i:135672495 original size:3 final size:3
Alignment explanation
Indices: 135672489--135672529 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
135672479 ATAAAAAAAA
135672489 AAT AAT AAT AAT AAT AAT AA- AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
135672530 GATAGTAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:135672510 original size:20 final size:20
Alignment explanation
Indices: 135672487--135672528 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
135672477 CGATAAAAAA
135672487 AAAATAATAATAATAATAAT
1 AAAATAATAATAATAATAAT
135672507 AAAATAATAATAATAATAAT
1 AAAATAATAATAATAATAAT
135672527 AA
1 AA
135672529 TGATAGTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (20 bp):
AAAATAATAATAATAATAAT
Found at i:135672512 original size:17 final size:17
Alignment explanation
Indices: 135672492--135672525 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
135672482 AAAAAAAAAT
135672492 AATAATAATAATAATAA
1 AATAATAATAATAATAA
135672509 AATAATAATAATAATAA
1 AATAATAATAATAATAA
135672526 TAATGATAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AATAATAATAATAATAA
Found at i:135673007 original size:38 final size:37
Alignment explanation
Indices: 135672921--135673010 Score: 137
Period size: 38 Copynumber: 2.4 Consensus size: 37
135672911 AATAAATATA
135672921 AAAATAAAATAAAATATGAGGGGTTGAATTTAAAAAG
1 AAAATAAAATAAAATATGAGGGGTTGAATTTAAAAAG
*
135672958 AGCAAGT-AAATAAAATATGAGGGGTTGAATTTAAAAAG
1 A--AAATAAAATAAAATATGAGGGGTTGAATTTAAAAAG
135672996 AAAATAAAAATAAAA
1 AAAAT-AAAATAAAA
135673011 CCAGAATATT
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
36 3 0.06
37 1 0.02
38 40 0.85
39 3 0.06
ACGTcount: A:0.59, C:0.01, G:0.18, T:0.22
Consensus pattern (37 bp):
AAAATAAAATAAAATATGAGGGGTTGAATTTAAAAAG
Found at i:135673482 original size:25 final size:26
Alignment explanation
Indices: 135673453--135673514 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
135673443 CCAAAAAACT
* *
135673453 TTTTTTATTTCATTACCAGCTTTCCC
1 TTTTTTATTTCATTACCAACTCTCCC
* *
135673479 TTTTTTATTCCTTTACCAACTCTCCC
1 TTTTTTATTTCATTACCAACTCTCCC
135673505 TTTTTTATTT
1 TTTTTTATTT
135673515 TTTATTTTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.15, C:0.26, G:0.02, T:0.58
Consensus pattern (26 bp):
TTTTTTATTTCATTACCAACTCTCCC
Found at i:135674879 original size:3 final size:3
Alignment explanation
Indices: 135674814--135674862 Score: 89
Period size: 3 Copynumber: 16.0 Consensus size: 3
135674804 TTTCATTTTC
135674814 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATTT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
135674860 ATT
1 ATT
135674863 TTCTACTTTA
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 42 0.93
4 3 0.07
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:135675379 original size:19 final size:18
Alignment explanation
Indices: 135675348--135675383 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
135675338 TTATATGCAG
135675348 TTTTAAATTTTATTTTAT
1 TTTTAAATTTTATTTTAT
*
135675366 TTTTGAATTATTATTTTA
1 TTTTAAATT-TTATTTTA
135675384 AGCTATTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (18 bp):
TTTTAAATTTTATTTTAT
Found at i:135676503 original size:251 final size:249
Alignment explanation
Indices: 135675936--135676436 Score: 797
Period size: 251 Copynumber: 2.0 Consensus size: 249
135675926 TATCCTTTTA
**** * * * *
135675936 AAATTTCAATGCATGAGTTTTGGAAATCATGAGATGATTTTGGGCATCGAAGGTTGGAAATGTCG
1 AAATTTCAATGCATGAGTAACCGAAATCACGACACGATTTT--GCATCAAAGGTTGGAAATGTCG
135676001 TGTCCTACGTGTTGGATGTGATATTTTACTCCTTCGAAACAAGAGAATCTTAATATCCACTTCAA
64 TGTCCTACGTGTTGGATGTGATATTTTACTCCTTCGAAACAAGAGAATCTTAATATCCACTTCAA
135676066 GTTAGCTAAACATTCATAAAAAAGGGATCGTATTTCCAAATTTGTTTTAAATCTTTTCAATTTTC
129 GTTAGCTAAACATTCATAAAAAAGGGATCGTATTTCCAAATTTGTTTTAAATCTTTTCAATTTTC
*
135676131 GATATTAAGACATTAATTAATCAATTCGGTACCAATTTTGGGCGTTACGAGGGTGC
194 GATATTAAGACATTAATTAATCAATTAGGTACCAATTTTGGGCGTTACGAGGGTGC
**** * * * *
135676187 AAATTTCAATGCATGAGTTTTGGAAATCATGAGATGATTTTGGGCATCGAAGGTTGGAAATGTCG
1 AAATTTCAATGCATGAGTAACCGAAATCACGACACGATTTT--GCATCAAAGGTTGGAAATGTCG
135676252 TGTCCTACGTGTTGGATGTGATATTTTACTCCTTCGAAACAAGAGAATCTTAATATCCACTTCAA
64 TGTCCTACGTGTTGGATGTGATATTTTACTCCTTCGAAACAAGAGAATCTTAATATCCACTTCAA
135676317 GTTAGCTAAACATTCAT-AAAAAGGGATCGTATTTCCAAATTTGTTTTAAATCTTTTCAATTTTC
129 GTTAGCTAAACATTCATAAAAAAGGGATCGTATTTCCAAATTTGTTTTAAATCTTTTCAATTTTC
*
135676381 GATATTAAGACATTAATTAATCAATTAGGTATCAATTTTGGGCGTTACGAGGGTGC
194 GATATTAAGACATTAATTAATCAATTAGGTACCAATTTTGGGCGTTACGAGGGTGC
135676437 TAATCCTTCC
Statistics
Matches: 248, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
250 101 0.41
251 147 0.59
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (249 bp):
AAATTTCAATGCATGAGTAACCGAAATCACGACACGATTTTGCATCAAAGGTTGGAAATGTCGTG
TCCTACGTGTTGGATGTGATATTTTACTCCTTCGAAACAAGAGAATCTTAATATCCACTTCAAGT
TAGCTAAACATTCATAAAAAAGGGATCGTATTTCCAAATTTGTTTTAAATCTTTTCAATTTTCGA
TATTAAGACATTAATTAATCAATTAGGTACCAATTTTGGGCGTTACGAGGGTGC
Found at i:135678714 original size:18 final size:18
Alignment explanation
Indices: 135678688--135678722 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
135678678 TGATATCTTA
* *
135678688 TTCATATCTATTAAAAAT
1 TTCACATCTACTAAAAAT
135678706 TTCACATCTACTAAAAA
1 TTCACATCTACTAAAAA
135678723 ATCTTTGAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (18 bp):
TTCACATCTACTAAAAAT
Found at i:135680852 original size:120 final size:120
Alignment explanation
Indices: 135680639--135680877 Score: 469
Period size: 120 Copynumber: 2.0 Consensus size: 120
135680629 TTATGTGCTG
*
135680639 AAGGAAGTGCAGAAGATATGTGAAGTGAAGTAAGTTAATTACAAATTGAAGGACTAGATGACAAA
1 AAGGAAGTGCAGAAGATATGTGAAGTGAAATAAGTTAATTACAAATTGAAGGACTAGATGACAAA
135680704 TATTTTAACTAAGCCTTTCCATGTTACTCGATTTCAATTCTTAGGAACAAACTTA
66 TATTTTAACTAAGCCTTTCCATGTTACTCGATTTCAATTCTTAGGAACAAACTTA
135680759 AAGGAAGTGCAGAAGATATGTGAAGTGAAATAAGTTAATTACAAATTGAAGGACTAGATGACAAA
1 AAGGAAGTGCAGAAGATATGTGAAGTGAAATAAGTTAATTACAAATTGAAGGACTAGATGACAAA
135680824 TATTTTAACTAAGCCTTTCCATGTTACTCGATTTCAATTCTTAGGAACAAACTT
66 TATTTTAACTAAGCCTTTCCATGTTACTCGATTTCAATTCTTAGGAACAAACTT
135680878 GGGTTTATAA
Statistics
Matches: 118, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 118 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (120 bp):
AAGGAAGTGCAGAAGATATGTGAAGTGAAATAAGTTAATTACAAATTGAAGGACTAGATGACAAA
TATTTTAACTAAGCCTTTCCATGTTACTCGATTTCAATTCTTAGGAACAAACTTA
Found at i:135684026 original size:22 final size:22
Alignment explanation
Indices: 135683998--135684042 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
135683988 AACTTGTTCT
135683998 AAAGATGAAAACCACAATACCC
1 AAAGATGAAAACCACAATACCC
135684020 AAAGATGAAAACCACAATACCC
1 AAAGATGAAAACCACAATACCC
135684042 A
1 A
135684043 CAGAAATAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.56, C:0.27, G:0.09, T:0.09
Consensus pattern (22 bp):
AAAGATGAAAACCACAATACCC
Found at i:135690718 original size:35 final size:35
Alignment explanation
Indices: 135690672--135690809 Score: 145
Period size: 35 Copynumber: 3.9 Consensus size: 35
135690662 TCTTAGACAC
** *
135690672 AGCCTTCAAGGCATACTTTGTCTTCTTCGGCACTT
1 AGCCTTCAAGGCATACTTCATCTTCTTCGACACTT
* * * *
135690707 AGCCTTTAAGGCAAACTTCATCTTC-TCAAATACTT
1 AGCCTTCAAGGCATACTTCATCTTCTTC-GACACTT
* * *
135690742 GGCCTTCAAGGCATGCTTCGTCTTCTAT-GACACTT
1 AGCCTTCAAGGCATACTTCATCTTCT-TCGACACTT
*
135690777 AGCCTTCAAGGCATACTTCATCTTCTTAGACAC
1 AGCCTTCAAGGCATACTTCATCTTCTTCGACAC
135690810 AGGCTTCAAG
Statistics
Matches: 82, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
34 3 0.04
35 78 0.95
37 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.14, T:0.34
Consensus pattern (35 bp):
AGCCTTCAAGGCATACTTCATCTTCTTCGACACTT
Found at i:135700673 original size:21 final size:22
Alignment explanation
Indices: 135700649--135700697 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
135700639 TAAAAATACT
* * *
135700649 AAAATATTAAAAT-ACTTTTCA
1 AAAATATAAAAATAAATTTTAA
135700670 AAAAT-TAAAAATAAATTTTAA
1 AAAATATAAAAATAAATTTTAA
135700691 AAAATAT
1 AAAATAT
135700698 GTATACTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 6 0.26
21 16 0.70
22 1 0.04
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (22 bp):
AAAATATAAAAATAAATTTTAA
Found at i:135700783 original size:30 final size:30
Alignment explanation
Indices: 135700738--135700795 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
135700728 CTTAATAAGT
135700738 AAATATCTCTAAAATAATAACAAAATTAAC
1 AAATATCTCTAAAATAATAACAAAATTAAC
* *
135700768 AAATTTCTTTAAAATAATAACAAAATTA
1 AAATATCTCTAAAATAATAACAAAATTA
135700796 TTAAAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.31
Consensus pattern (30 bp):
AAATATCTCTAAAATAATAACAAAATTAAC
Found at i:135700846 original size:14 final size:14
Alignment explanation
Indices: 135700823--135700898 Score: 68
Period size: 14 Copynumber: 5.6 Consensus size: 14
135700813 TACCATATCC
135700823 AAATAATAACAATA
1 AAATAATAACAATA
*
135700837 AAATAGTAACAATA
1 AAATAATAACAATA
*
135700851 TAATAATAA-AATA
1 AAATAATAACAATA
* * *
135700864 GTAATAA-AATAAAA
1 -AAATAATAACAATA
*
135700878 AAAAAATAACAA-A
1 AAATAATAACAATA
135700891 AAATAATA
1 AAATAATA
135700899 TTAAAAAATA
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
13 18 0.35
14 33 0.65
ACGTcount: A:0.72, C:0.04, G:0.03, T:0.21
Consensus pattern (14 bp):
AAATAATAACAATA
Found at i:135700904 original size:11 final size:11
Alignment explanation
Indices: 135700827--135700910 Score: 73
Period size: 11 Copynumber: 7.8 Consensus size: 11
135700817 ATATCCAAAT
*
135700827 AATAACAATAA
1 AATAATAATAA
* *
135700838 AATAGTAACAA
1 AATAATAATAA
*
135700849 TATAATAATAA
1 AATAATAATAA
*
135700860 AATAGTAATAA
1 AATAATAATAA
* *
135700871 AATAAAAAAAA
1 AATAATAATAA
*
135700882 AATAACAA-AA
1 AATAATAATAA
*
135700892 AATAATATTAA
1 AATAATAATAA
135700903 AA-AATAAT
1 AATAATAAT
135700911 TTTTTTGTCG
Statistics
Matches: 57, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
10 13 0.23
11 44 0.77
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.23
Consensus pattern (11 bp):
AATAATAATAA
Found at i:135706186 original size:21 final size:21
Alignment explanation
Indices: 135706162--135706220 Score: 86
Period size: 21 Copynumber: 2.9 Consensus size: 21
135706152 CATATTCCGT
135706162 TCCGGTTCAGTATTTTTAGTG
1 TCCGGTTCAGTATTTTTAGTG
*
135706183 TCCGGTTCAGT-TATTTTGGTG
1 TCCGGTTCAGTAT-TTTTAGTG
135706204 TCCGGTTCA-TATTTTTA
1 TCCGGTTCAGTATTTTTA
135706221 ACCTATTTGG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 6 0.18
21 28 0.82
ACGTcount: A:0.14, C:0.15, G:0.22, T:0.49
Consensus pattern (21 bp):
TCCGGTTCAGTATTTTTAGTG
Found at i:135709491 original size:16 final size:16
Alignment explanation
Indices: 135709470--135709501 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
135709460 GCGTGGAAGA
135709470 AAGAGAATAGTTTCAG
1 AAGAGAATAGTTTCAG
135709486 AAGAGAATAGTTTCAG
1 AAGAGAATAGTTTCAG
135709502 TTGAATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (16 bp):
AAGAGAATAGTTTCAG
Done.