Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 77 of 438
Found at i:20696699 original size:75 final size:75
Alignment explanation
Indices: 20696616--20696766 Score: 187
Period size: 75 Copynumber: 2.0 Consensus size: 75
20696606 ATTTTAACTC
* * * * * * *
20696616 AATTAATTTTTGTGTTTTGGGCTTT-GTCTTGTCCAAATATCTCCAAAATAGATATCACAATGCT
1 AATTAATTTTTATGTTTTAGGCTTTAAT-TTGTCCAAATATCTCAAAAACAGATAGCACAATACT
20696680 TATATTTTAAA
65 TATATTTTAAA
* * *
20696691 AATTAATTTTTATGTTTTAGGTTTTAATTTGTCTAAATATCTCAAAAACAGATAGCCCAATACTT
1 AATTAATTTTTATGTTTTAGGCTTTAATTTGTCCAAATATCTCAAAAACAGATAGCACAATACTT
*
20696756 TTATTTTAAA
66 ATATTTTAAA
20696766 A
1 A
20696767 TTTGTCAATT
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
75 63 0.98
76 1 0.02
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (75 bp):
AATTAATTTTTATGTTTTAGGCTTTAATTTGTCCAAATATCTCAAAAACAGATAGCACAATACTT
ATATTTTAAA
Found at i:20699129 original size:185 final size:186
Alignment explanation
Indices: 20698714--20699130 Score: 527
Period size: 188 Copynumber: 2.2 Consensus size: 186
20698704 AAAGTGCATG
* * * * * * * * * * *
20698714 GCAGATTTGGATTTTTCCAAAGTTATGGTCTGCCATGTGAATATATATAACCTTAGGGTTTAGTG
1 GCAGGTTTGGATTTTTGCAAACTTATAGCCTACCATTTGCATACAGATAGCCTTAGGGTTTAGTG
* *
20698779 ACAAATCATTTTTTATTGAATTATTTGAAATTGTGTATGTCATTAAATTATTAAAATATGATTCA
66 ACAAATAATTTTTTATTGAATTATTTGAAACTGTGTATGTCATTAAATTATTAAAATATGATT-A
* * *
20698844 AATATATATTTTAAATGTTGATTGAAATATGATTTTATTGTTTGTATCAAACTGAATA
130 AATATATATCTTAAATCTTAATTGAAATATGA-TTTATTGTTTGTATCAAACTGAATA
*
20698902 GTAGGTTTGGATTTTTGCAAACTTATAGCCTACCATTTGCATACAGATAGCCTTAGGGTTTAGTG
1 GCAGGTTTGGATTTTTGCAAACTTATAGCCTACCATTTGCATACAGATAGCCTTAGGGTTTAGTG
* * *
20698967 CCAAATAATTTTTTTATTGAATTATTTGAAACTGTGTATGTCATTGAATTATTCAAATATGATT-
66 ACAAATAA-TTTTTTATTGAATTATTTGAAACTGTGTATGTCATTAAATTATTAAAATATGATTA
* * *
20699031 TATGAT-TATCTTAAATCTTAATTGAAATATGA-TTATTGTTTGTATCAAATTGAATT
130 AAT-ATATATCTTAAATCTTAATTGAAATATGATTTATTGTTTGTATCAAACTGAATA
* * *
20699087 GCAGGTTTGGATTTTTGTAAACTTATTG-TTCACCATTTGCATAC
1 GCAGGTTTGGATTTTTGCAAACTTATAGCCT-ACCATTTGCATAC
20699131 TAATTACCTT
Statistics
Matches: 199, Mismatches: 27, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
184 1 0.01
185 60 0.30
187 25 0.13
188 61 0.31
189 52 0.26
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.44
Consensus pattern (186 bp):
GCAGGTTTGGATTTTTGCAAACTTATAGCCTACCATTTGCATACAGATAGCCTTAGGGTTTAGTG
ACAAATAATTTTTTATTGAATTATTTGAAACTGTGTATGTCATTAAATTATTAAAATATGATTAA
ATATATATCTTAAATCTTAATTGAAATATGATTTATTGTTTGTATCAAACTGAATA
Found at i:20699143 original size:185 final size:185
Alignment explanation
Indices: 20698763--20699143 Score: 520
Period size: 185 Copynumber: 2.0 Consensus size: 185
20698753 AATATATATA
* *
20698763 ACCTTAGGGTTTAGTGACAAATCATTTTTTATTGAATTATTTGAAATTGTGTATGTCATTAAATT
1 ACCTTAGGGTTTAGTGACAAATAATTTTTTATTGAATTATTTGAAACTGTGTATGTCATTAAATT
* * *
20698828 ATTAAAATATGATTCAAATATATATTTTAAATGTTGATTGAAATATGATTTTATTGTTTGTATCA
66 ATTAAAATATGATT-AAATATATATCTTAAATCTTAATTGAAATATGA-TTTATTGTTTGTATCA
*
20698893 AACTGAATAGTAGGTTTGGATTTTTGCAAACTTATAGCCTACCATTTGCATACAGAT
129 AACTGAATAGCAGGTTTGGATTTTTGCAAACTTATAGCCTACCATTTGCATACAGAT
* *
20698950 AGCCTTAGGGTTTAGTGCCAAATAATTTTTTTATTGAATTATTTGAAACTGTGTATGTCATTGAA
1 A-CCTTAGGGTTTAGTGACAAATAA-TTTTTTATTGAATTATTTGAAACTGTGTATGTCATTAAA
* *
20699015 TTATTCAAATATGATT-TATGAT-TATCTTAAATCTTAATTGAAATATGA-TTATTGTTTGTATC
64 TTATTAAAATATGATTAAAT-ATATATCTTAAATCTTAATTGAAATATGATTTATTGTTTGTATC
* * * * *
20699077 AAATTGAATTGCAGGTTTGGATTTTTGTAAACTTATTG-TTCACCATTTGCATACTA-ATT
128 AAACTGAATAGCAGGTTTGGATTTTTGCAAACTTATAGCCT-ACCATTTGCATAC-AGA-T
20699136 ACCTTAGG
1 ACCTTAGG
20699144 AAAGAGACAA
Statistics
Matches: 173, Mismatches: 15, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
184 1 0.01
185 68 0.39
186 3 0.02
187 26 0.15
188 23 0.13
189 52 0.30
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.44
Consensus pattern (185 bp):
ACCTTAGGGTTTAGTGACAAATAATTTTTTATTGAATTATTTGAAACTGTGTATGTCATTAAATT
ATTAAAATATGATTAAATATATATCTTAAATCTTAATTGAAATATGATTTATTGTTTGTATCAAA
CTGAATAGCAGGTTTGGATTTTTGCAAACTTATAGCCTACCATTTGCATACAGAT
Found at i:20699426 original size:184 final size:183
Alignment explanation
Indices: 20699109--20699666 Score: 827
Period size: 184 Copynumber: 3.0 Consensus size: 183
20699099 TTTTGTAAAC
** * * *
20699109 TTATTGTTCACCATTTGCATACTAATTACCTTAGGAAAGAGACAAATTAGTTCCTATTTTGGATT
1 TTATTGTTTGCCATTT-CATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATT
* *
20699174 ATTGTTTGGTTATTGTCTGCCATATGCATGATACTATTTTGGATTAAAGTGCATGATTATTATTT
65 ATTGTTTGGTTATTGTCTGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTT
* * *
20699239 GGTTATTATACATGACAGAAATGGATTTTTTGTGTTAAATTGTTTTTGTATTGG
130 GGTTATTGTACATGACAAAAATGAATTTTTTGTGTTAAATTGTTTTTGTATTGG
20699293 TTATTGTTTGCCATTTTCATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATT
1 TTATTGTTTGCCA-TTTCATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATT
* * * *
20699358 ATTGTTTGGCTATTGTATGTCATGTGCATGATACTATTTTGGATTAAAGTGCATCATTATTGTTT
65 ATTGTTTGGTTATTGTCTGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTT
* *
20699423 GGTTATTGTACATGACAAAAATGAAATTTTTTTTTGTGTTAAATTATTTTTGTATTGA
130 GGTTATTGTACATGACAAAAATG-AA---TTTTTTGTGTTAAATTGTTTTTGTATTGG
*
20699481 TTATTGTCTGCC----CATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATTA
1 TTATTGTTTGCCATTTCATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATTA
* * * *
20699542 TTGTTTGGTTATTGTCTGCCATGTGCATGATACTGTTTCGAATTAAAGTGCATGACTATTGTTTG
66 TTGTTTGGTTATTGTCTGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTTG
* *
20699607 GTTATTGTACACGACAAAAATGAATTTTTTGTGTTAAATTGTTTTTGTATGGG
131 GTTATTGTACATGACAAAAATGAATTTTTTGTGTTAAATTGTTTTTGTATTGG
20699660 TTATTGT
1 TTATTGT
20699667 CTACCATTGC
Statistics
Matches: 340, Mismatches: 29, Indels: 15
0.89 0.08 0.04
Matches are distributed among these distances:
179 33 0.10
182 2 0.01
183 127 0.37
184 136 0.40
185 4 0.01
188 38 0.11
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (183 bp):
TTATTGTTTGCCATTTCATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATTA
TTGTTTGGTTATTGTCTGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTTG
GTTATTGTACATGACAAAAATGAATTTTTTGTGTTAAATTGTTTTTGTATTGG
Found at i:20699567 original size:183 final size:180
Alignment explanation
Indices: 20699126--20699668 Score: 818
Period size: 183 Copynumber: 3.0 Consensus size: 180
20699116 TCACCATTTG
* * *
20699126 CATACTAATTACCTTAGGAAAGAGACAAATTAGTTCCTATTTTGGATTATTGTTTGGTTATTGTC
1 CATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATTATTGTTTGGTTATTGTC
* * *
20699191 TGCCATATGCATGATACTATTTTGGATTAAAGTGCATGATTATTATTTGGTTATTATACATGACA
66 TGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTTGGTTATTGTACATGACA
* * *
20699256 GAAATGGATTTTTTGTGTTAAATTGTTTTTGTATTGGTTATTGTTTGCCATTTT
131 AAAATGAATTTTTTGTGTTAAATTGTTTTTGTATTGGTTATTGTCTGCC----T
* *
20699310 CATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATTATTGTTTGGCTATTGTA
1 CATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATTATTGTTTGGTTATTGTC
* *
20699375 TGTCATGTGCATGATACTATTTTGGATTAAAGTGCATCATTATTGTTTGGTTATTGTACATGACA
66 TGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTTGGTTATTGTACATGACA
* *
20699440 AAAATGAAATTTTTTTTTGTGTTAAATTATTTTTGTATTGATTATTGTCTGCC-
131 AAAATG-AA---TTTTTTGTGTTAAATTGTTTTTGTATTGGTTATTGTCTGCCT
20699493 CATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATTATTGTTTGGTTATTGTC
1 CATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATTATTGTTTGGTTATTGTC
* * * * *
20699558 TGCCATGTGCATGATACTGTTTCGAATTAAAGTGCATGACTATTGTTTGGTTATTGTACACGACA
66 TGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTTGGTTATTGTACATGACA
*
20699623 AAAATGAATTTTTTGTGTTAAATTGTTTTTGTATGGGTTATTGTCT
131 AAAATGAATTTTTTGTGTTAAATTGTTTTTGTATTGGTTATTGTCT
20699669 ACCATTGCCT
Statistics
Matches: 328, Mismatches: 27, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
179 35 0.11
182 2 0.01
183 127 0.39
184 125 0.38
185 1 0.00
188 38 0.12
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (180 bp):
CATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATTATTGTTTGGTTATTGTC
TGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTTGGTTATTGTACATGACA
AAAATGAATTTTTTGTGTTAAATTGTTTTTGTATTGGTTATTGTCTGCCT
Found at i:20703047 original size:26 final size:26
Alignment explanation
Indices: 20703011--20703118 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
20703001 TGAAATTCCA
*
20703011 ATCATGGAACATTTACCAAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
20703037 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
20703063 ATCATGAAACATTTACCTAGCCCATT
1 ATCATGGAACATTTACCTAACCCATT
20703089 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
20703115 ATCA
1 ATCA
20703119 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:20704793 original size:48 final size:48
Alignment explanation
Indices: 20704731--20704859 Score: 161
Period size: 48 Copynumber: 2.7 Consensus size: 48
20704721 AACATACTAT
*
20704731 TTGTGGACAAGCCACCACATAATTACCGATAAACA-ATCAAATAACACA
1 TTGTGGACAAGCCACCACATAATTACCGATAAACAGCT-AAATAACACA
* ** * *
20704779 TTGTGGACAAGCCACTACATAATTTTCGATAAACGGCTAGATAACACA
1 TTGTGGACAAGCCACCACATAATTACCGATAAACAGCTAAATAACACA
* * *
20704827 TTGTGGACAAACCACCACATAATTGCCAATAAA
1 TTGTGGACAAGCCACCACATAATTACCGATAAA
20704860 GGCCACATAA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
48 68 0.99
49 1 0.01
ACGTcount: A:0.42, C:0.23, G:0.13, T:0.22
Consensus pattern (48 bp):
TTGTGGACAAGCCACCACATAATTACCGATAAACAGCTAAATAACACA
Found at i:20704866 original size:21 final size:22
Alignment explanation
Indices: 20704841--20704891 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
20704831 GGACAAACCA
20704841 CCACATAATTGCCA-ATAAA-GG
1 CCACATAATTG-CAGATAAACGG
*
20704862 CCACATAATTGCAGATAAACTG
1 CCACATAATTGCAGATAAACGG
20704884 CCACATAA
1 CCACATAA
20704892 CTTCTACCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 2 0.07
21 16 0.59
22 9 0.33
ACGTcount: A:0.43, C:0.25, G:0.12, T:0.20
Consensus pattern (22 bp):
CCACATAATTGCAGATAAACGG
Found at i:20705179 original size:6 final size:6
Alignment explanation
Indices: 20705162--20705206 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
20705152 GAGATCTACA
* * *
20705162 CATACAT CATAAT CATAAC CATAAT CAGAAT CAGAAT CATAAT CA
1 CATA-AT CATAAT CATAAT CATAAT CATAAT CATAAT CATAAT CA
20705207 CATCAATTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
6 30 0.88
7 4 0.12
ACGTcount: A:0.49, C:0.22, G:0.04, T:0.24
Consensus pattern (6 bp):
CATAAT
Found at i:20706700 original size:4 final size:4
Alignment explanation
Indices: 20706683--20706720 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
20706673 AGATTATCTA
* *
20706683 AAAT AAAG AAAT AAAT AAAT AAAT -AAT AAAT AATT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
20706721 ATTCAGGTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
3 3 0.10
4 26 0.90
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:20709672 original size:3 final size:3
Alignment explanation
Indices: 20709659--20709688 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
20709649 ATCTCCATTT
20709659 TTC TT- TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
20709689 ACTGCATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:20711889 original size:2 final size:2
Alignment explanation
Indices: 20711884--20711935 Score: 72
Period size: 2 Copynumber: 26.5 Consensus size: 2
20711874 TATATTTTGA
*
20711884 AT AT AT AT AT AT AT AT AT AT AT AG A- AT CA- AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT
20711925 AT AT AT AT AT A
1 AT AT AT AT AT A
20711936 GAATCTTACT
Statistics
Matches: 46, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
1 2 0.04
2 43 0.93
3 1 0.02
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (2 bp):
AT
Found at i:20711950 original size:29 final size:29
Alignment explanation
Indices: 20711883--20711940 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
20711873 ATATATTTTG
20711883 AATATATATATATATATATATATAGAATC
1 AATATATATATATATATATATATAGAATC
20711912 AATATATATATATATATATATATAGAATC
1 AATATATATATATATATATATATAGAATC
20711941 TTACTCTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.41
Consensus pattern (29 bp):
AATATATATATATATATATATATAGAATC
Found at i:20716143 original size:48 final size:47
Alignment explanation
Indices: 20716080--20716205 Score: 144
Period size: 47 Copynumber: 2.7 Consensus size: 47
20716070 GTGTGAATGA
* * *
20716080 TACCTTGATTTGGCTACGGACCATGGTATAGACATTTCAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGACA-CTCAGAGAGAAGT
* * * ** * * *
20716128 TACCTTGATTTGGCTACGGGCTATAGTGTAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGACACTCAGAGAGAAGT
20716175 TACCTTGATTTGGCTACGGGCCATGGTATAG
1 TACCTTGATTTGGCTACGGGCCATGGTATAG
20716206 GTACTTATCA
Statistics
Matches: 64, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
47 36 0.56
48 28 0.44
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGACACTCAGAGAGAAGT
Found at i:20720260 original size:29 final size:29
Alignment explanation
Indices: 20720199--20720423 Score: 231
Period size: 29 Copynumber: 7.8 Consensus size: 29
20720189 GTGTGCTAAA
* *
20720199 TGATGGTCGTAACCAT-CCATTTCATAAT
1 TGATGGTCGTCACCATCCCTTTTCATAAT
* * *
20720227 CGATGGTCGTCACAATCCCTTTTCATAAG
1 TGATGGTCGTCACCATCCCTTTTCATAAT
* * ** * *
20720256 CGATGGTTGAAACTATCCCTTTTCATATT
1 TGATGGTCGTCACCATCCCTTTTCATAAT
* *
20720285 TGATGGTGGTCACCATCCCTTTTCATAGT
1 TGATGGTCGTCACCATCCCTTTTCATAAT
*
20720314 TGGTGGTCGTCACCATCCCTTTTCAT-AT
1 TGATGGTCGTCACCATCCCTTTTCATAAT
** ** * *
20720342 TCGATATTC-AAACTATCCCTTTTCATATT
1 T-GATGGTCGTCACCATCCCTTTTCATAAT
*
20720371 TGATGGTCGTCACCATCCCTTTTCATAGT
1 TGATGGTCGTCACCATCCCTTTTCATAAT
20720400 TGATGGTCGTCACCATCCCTTTTC
1 TGATGGTCGTCACCATCCCTTTTC
20720424 TTTAATCGAT
Statistics
Matches: 160, Mismatches: 33, Indels: 7
0.80 0.17 0.04
Matches are distributed among these distances:
28 34 0.21
29 126 0.79
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (29 bp):
TGATGGTCGTCACCATCCCTTTTCATAAT
Found at i:20720366 original size:86 final size:87
Alignment explanation
Indices: 20720199--20720423 Score: 337
Period size: 86 Copynumber: 2.6 Consensus size: 87
20720189 GTGTGCTAAA
* * * * * *
20720199 TGATGGTCGTAACCAT-CCATTTCATAATCGATGGTCGTCACAATCCCTTTTCATAAGCGATGGT
1 TGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAAGCGATGAT
*
20720263 TGAAACTATCCCTTTTCATATT
66 TCAAACTATCCCTTTTCATATT
* * **
20720285 TGATGGTGGTCACCATCCCTTTTCATAGTTGGTGGTCGTCACCATCCCTTTTCATATTCGAT-AT
1 TGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAAGCGATGAT
20720349 TCAAACTATCCCTTTTCATATT
66 TCAAACTATCCCTTTTCATATT
20720371 TGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTC
1 TGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTC
20720424 TTTAATCGAT
Statistics
Matches: 125, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
86 87 0.70
87 38 0.30
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (87 bp):
TGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAAGCGATGAT
TCAAACTATCCCTTTTCATATT
Found at i:20722392 original size:26 final size:25
Alignment explanation
Indices: 20722363--20722420 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 25
20722353 TAGCCGCCAG
20722363 GGCTTTCTAGAAAAACTAGCCACTAA
1 GGCTTTCTAG-AAAACTAGCCACTAA
* *
20722389 GGCTTTTCTAGATATCTAGCCACTAA
1 GGC-TTTCTAGAAAACTAGCCACTAA
20722415 GGCTTT
1 GGCTTT
20722421 TCAGGAAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 3 0.10
26 19 0.66
27 7 0.24
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (25 bp):
GGCTTTCTAGAAAACTAGCCACTAA
Found at i:20722911 original size:13 final size:13
Alignment explanation
Indices: 20722893--20722917 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20722883 TGAAAACTAA
20722893 AAATTAACTAAGT
1 AAATTAACTAAGT
20722906 AAATTAACTAAG
1 AAATTAACTAAG
20722918 GAAAATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (13 bp):
AAATTAACTAAGT
Found at i:20727043 original size:27 final size:26
Alignment explanation
Indices: 20727013--20727063 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
20727003 GGATATGAAA
*
20727013 GGAGCTATAAGAAACTCAAACAATGTG
1 GGAGCTATAAAAAACTCAAA-AATGTG
* *
20727040 GGAGCTTTAAAAAATTCAAAAATG
1 GGAGCTATAAAAAACTCAAAAATG
20727064 AATGAAGCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 4 0.19
27 17 0.81
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.22
Consensus pattern (26 bp):
GGAGCTATAAAAAACTCAAAAATGTG
Found at i:20729278 original size:3 final size:3
Alignment explanation
Indices: 20729265--20729347 Score: 57
Period size: 3 Copynumber: 27.3 Consensus size: 3
20729255 GAGGGCATAT
**
20729265 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GGA ATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A ATA ATA ATA
* *
20729312 ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
20729348 AACAAAGCTC
Statistics
Matches: 63, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
2 8 0.13
3 45 0.71
4 9 0.14
5 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:20729289 original size:12 final size:12
Alignment explanation
Indices: 20729265--20729344 Score: 67
Period size: 12 Copynumber: 6.8 Consensus size: 12
20729255 GAGGGCATAT
20729265 ATAATAT-AATA
1 ATAATATAAATA
20729276 ATAATATAAATA
1 ATAATATAAATA
*
20729288 ATAATATATACATG
1 ATAATATA-A-ATA
**
20729302 AGGA-AT-AATA
1 ATAATATAAATA
20729312 ATAATATAAATA
1 ATAATATAAATA
* *
20729324 ATAGTAAAAATA
1 ATAATATAAATA
*
20729336 ATAAAATAA
1 ATAATATAA
20729345 TAAAACAAAG
Statistics
Matches: 53, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
10 4 0.08
11 10 0.19
12 32 0.60
13 3 0.06
14 4 0.08
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:20729295 original size:30 final size:32
Alignment explanation
Indices: 20729261--20729326 Score: 82
Period size: 36 Copynumber: 2.0 Consensus size: 32
20729251 TGAAGAGGGC
20729261 ATATATA-AT-ATAATAATAATATAAATAATA
1 ATATATACATGATAATAATAATATAAATAATA
20729291 ATATATACATGAGGAATAATAATAATATAAATAATA
1 ATATATACAT---G-ATAATAATAATATAAATAATA
20729327 GTAAAAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
30 7 0.23
31 2 0.07
36 21 0.70
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.33
Consensus pattern (32 bp):
ATATATACATGATAATAATAATATAAATAATA
Found at i:20729675 original size:25 final size:26
Alignment explanation
Indices: 20729643--20729692 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20729633 AAAAACTAGC
* *
20729643 CTTTCC-AAGAAACAAAAATAACCTT
1 CTTTCCAAAAAAACAAAAAAAACCTT
20729668 CTTTCCAAAAAAACAAAAAAAACCT
1 CTTTCCAAAAAAACAAAAAAAACCT
20729693 CCTCCAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.54, C:0.24, G:0.02, T:0.20
Consensus pattern (26 bp):
CTTTCCAAAAAAACAAAAAAAACCTT
Found at i:20729703 original size:21 final size:23
Alignment explanation
Indices: 20729677--20729724 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
20729667 TCTTTCCAAA
20729677 AAAACAAA-AA-AAACCTCCTCC
1 AAAACAAAGAACAAACCTCCTCC
* *
20729698 AAAACAAAGAACAATCCTTCTCC
1 AAAACAAAGAACAAACCTCCTCC
20729721 AAAA
1 AAAA
20729725 AACCAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 8 0.35
22 2 0.09
23 13 0.57
ACGTcount: A:0.56, C:0.29, G:0.02, T:0.12
Consensus pattern (23 bp):
AAAACAAAGAACAAACCTCCTCC
Found at i:20730451 original size:176 final size:176
Alignment explanation
Indices: 20730245--20732380 Score: 2053
Period size: 176 Copynumber: 12.1 Consensus size: 176
20730235 TCTTCGATCC
* *
20730245 GTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGAT
*
20730310 GTCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
66 GCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
* *
20730375 CCGTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTT
131 CTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
* * *
20730421 GTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTGTTCCCTATAAGCACAAGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGAT
** * * ** * * * * ** *
20730486 GCCAAAT-CTGATGTTTTC-AACTTGTTCCCTATAAGCACAGGGATG-C-CATGCTGAAATCTTT
66 GCC--ATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGAT-CTGCTATCTTC
* * * * * * * * *
20730547 GATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATTTTCGA-TCC
128 GATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACT-T
* * *
20730597 ATTCCCTATATGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGAT
* *
20730662 GCCATGCT-AAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
66 GCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
* ** * *
20730726 TTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-T
131 CTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATGT-TTTCAACTT
* * * * * * * * *
20730771 GCTTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTCGATTTGTTCCCTATAAGCACAGGGA
1 G-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGA
*** * * ** * * * * * * * *
20730836 TGCCAAAT-CTGTTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTC
65 TGCC--ATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTC
* *
20730899 -AACTTGTTCCCTATAAGCACAAGGATGCCAAATCTGATGTTTTCAACTT
128 GATC-TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
* * * * *
20730948 GTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-TGCTTCACTGTAAGCACAGG
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACTTG-TTCCCTATAAGCACAGG
* * ** * * * * * * * * * * *
20731010 AATGTCA-GATCTGCTATTTTCGATCCA-TTCCCTATATGCACAGGGATGCCAAATCTGATGTTT
63 GATGCCATG--CTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCT
* * ** * *
20731073 TC-AACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTAAAATCTTTGATC-T
126 TCGATC-TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATGT-TTTCAACTT
* * * * * * * * *
20731123 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGA
1 G-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGA
* *
20731188 TGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
65 TGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
*
20731253 TTTGTTCCCTATAAGCACAGGGATGCCAAATCT-ACTGTTTTCAACTT
130 TCTGTTCCCTATAAGCACAGGGATGCCAAATCTGA-TGTTTTCAACTT
* *
20731300 GTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGAT
*
20731365 GCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGAT
66 GCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
** *
20731430 CCATTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTT
131 CTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
*
20731476 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGAT
* *
20731541 GCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAAGG-ATGTCAGATCTGCTATCTTCGA
66 GCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCAC-AGGAATGTCAGATCTGCTATCTTCGA
*
20731605 TCCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
130 TCTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
* * * * *
20731652 GTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-TGCTTCACTGTAAGCACAGG
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACTTG-TTCCCTATAAGCACAGG
* * ** ** * * * * * ** * *
20731714 AATGTCA-GATCTGCTATCTTCGAT-TTGTTCCCTATAAGCACAGGGATGCCAAATCTAATGTTT
63 GATGCCATG--CTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCT
* ** * *
20731777 TC-AACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-T
126 TCGATC-TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATGT-TTTCAACTT
* * * * * * * * * *
20731827 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCTTATAAGCACAGGGA
1 G-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGA
*** * * ** * * * **
20731892 TGCCAAAT-CTGTTGTTTTC-AACTTGTTC-CTTATAAGCACAGGGATG-C-CATGCTGAAATCT
65 TGCC--ATGCTGAAATCTTCGATCTACTTCAC-TGTAAGCACAGGAATGTCAGAT-CTGCTATCT
** * * * * * * * *
20731952 TCGATCTGCTTTACTGTAAGCACAGGAATGTCAGATCTGCTATATTCGA-TCT
126 TCGATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACT-T
* *
20732004 GTTCCCTATAAGCATAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGAT
20732069 GCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
66 GCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
* *
20732134 CCGTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTT
131 CTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
*
20732180 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGAT
* * * *
20732245 GCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGTACAAGAATGTCAGATCTGCTATCTTCGAT
66 GCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
20732310 CTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
131 CTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
20732356 GTTCCCTATAAGCACAGGGATGCCA
1 GTTCCCTATAAGCACAGGGATGCCA
20732381 TGCTGAAATC
Statistics
Matches: 1605, Mismatches: 282, Indels: 146
0.79 0.14 0.07
Matches are distributed among these distances:
173 2 0.00
174 26 0.02
175 180 0.11
176 1299 0.81
177 83 0.05
178 15 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (176 bp):
GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGAT
GCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
CTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
Found at i:20732298 original size:132 final size:131
Alignment explanation
Indices: 20730245--20732549 Score: 1602
Period size: 132 Copynumber: 17.5 Consensus size: 131
20730235 TCTTCGATCC
* * * *
20730245 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGCTGT-TTTCAACTTGTTCCCTATAAGCACAGGG
1 GTTCCCTATAAGCACAGGGATGCC--ATGCTGATATCTTTGATC-TGTTCCCTATAAGCACAGGG
* * * * ** * * * * * * *
20730308 ATGTC--ATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTT
63 ATGCCAAAT-CTGATATTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTT
* *
20730371 CGA-TCC
126 CAACT-T
* * * *
20730377 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGTTGT-TTTCAACTTGTTCCCTATAAGCACAGGG
1 GTTCCCTATAAGCACAGGGATGCC--ATGCTGATATCTTTGATC-TGTTCCCTATAAGCACAGGG
* * * *
20730440 ATGCCAAATCTGTTGTTTTCAACTTGTTCCCTATAAGCACAAGGATGCCAAATCTGATGTTTTCA
63 ATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCA
20730505 ACTT
128 ACTT
* * * *
20730509 GTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAAT
1 GTTCCCTATAAGCACAGGGATGCCATGCTGATATCTTTGATCTG-TTCCCTATAAGCACAGGGAT
* * * * ** * *
20730574 GTCAGATCTGCTATTTTCGA-TCCATTCCCTATATGCACAGGGATGCCAAATCTGATGTTTTCAA
65 GCCAAATCTGATATTTTCAACT-TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAA
20730638 CTT
129 CTT
* * * *
20730641 GTTCCCTATAAGCACAGGGATGCCATGCT-AAATCTTTGATCTGCTTCACTGTAAGCACAGGAAT
1 GTTCCCTATAAGCACAGGGATGCCATGCTGATATCTTTGATCTG-TTCCCTATAAGCACAGGGAT
* * * * * * * *
20730705 GTCAGATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGA
65 GCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCA
*
20730768 TC-T
128 ACTT
* * * * * * *
20730771 GCTTCACTGTAAGCACAGGAATGTCA-GATCTGTTATCTTCGATTTGTTCCCTATAAGCACAGGG
1 G-TTCCCTATAAGCACAGGGATGCCATG--CTGATATCTTTGATCTGTTCCCTATAAGCACAGGG
* * * *
20730835 ATGCCAAATCTGTTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCA
63 ATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCA
20730900 ACTT
128 ACTT
* * * *
20730904 GTTCCCTATAAGCACAAGGATGCCAAAT-CTGATGT-TTTCAACTTGTTCCCTATAAGCACAGGG
1 GTTCCCTATAAGCACAGGGATGCC--ATGCTGATATCTTTGATC-TGTTCCCTATAAGCACAGGG
* * * * * * * * *
20730967 ATGCC--ATGCTGAAATCTTTGATC-TGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATTT
63 ATGCCAAAT-CTGATAT-TTTCAACTTG-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTT
* *
20731029 TCGA-TCC
125 TCAACT-T
* * * * *
20731036 ATTCCCTATATGCACAGGGATGCCAAAT-CTGATGT-TTTCAACTTGTTCCCTATAAGCACAGGG
1 GTTCCCTATAAGCACAGGGATGCC--ATGCTGATATCTTTGATC-TGTTCCCTATAAGCACAGGG
* * * * * * * * * * *
20731099 ATGCC--ATGCTAAAATCTTTGATC-TGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCT
63 ATGCCAAAT-CTGATAT-TTTCAACTTG-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTT
* *
20731161 TCGATTT
125 TCAACTT
* * * *
20731168 GTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAAT
1 GTTCCCTATAAGCACAGGGATGCCATGCTGATATCTTTGATCTG-TTCCCTATAAGCACAGGGAT
* * * * * * *
20731233 GTCAGATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATCT-ACTGTTTTCAA
65 GCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGA-TATTTTCAA
20731297 CTT
129 CTT
* * * *
20731300 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGCTGT-TTTCAACTTGTTCCCTATAAGCACAGGG
1 GTTCCCTATAAGCACAGGGATGCC--ATGCTGATATCTTTGATC-TGTTCCCTATAAGCACAGGG
* * * ** * * * * * *
20731363 ATGCC--ATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAAATCTGCTATCTT
63 ATGCCAAAT-CTGATATTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTT
* *
20731426 CGA-TCC
126 CAACT-T
* * * * *
20731432 ATTCCCTATAAGCACAGGGATGCCAAAT-CTGTTGT-TTTCAACTTGTTCCCTATAAGCACAGGG
1 GTTCCCTATAAGCACAGGGATGCC--ATGCTGATATCTTTGATC-TGTTCCCTATAAGCACAGGG
* *
20731495 ATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTT
63 ATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTT
* *
20731558 GATC-T
126 CAACTT
* * * * * * *
20731563 GCTTCACTGTAAGCACAAGGATGTCA-GATCTGCTATCTTCGATCCGTTCCCTATAAGCACAGGG
1 G-TTCCCTATAAGCACAGGGATGCCATG--CTGATATCTTTGATCTGTTCCCTATAAGCACAGGG
* *
20731627 ATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTT
63 ATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTT
* *
20731690 GATC-T
126 CAACTT
* * * * * * *
20731695 GCTTCACTGTAAGCACAGGAATGTCA-GATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGG
1 G-TTCCCTATAAGCACAGGGATGCCATG--CTGATATCTTTGATCTGTTCCCTATAAGCACAGGG
* * *
20731759 ATGCCAAATCTAATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTT
63 ATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTT
* *
20731822 GATC-T
126 CAACTT
* * * * * * * *
20731827 GCTTCACTGTAAGCACAGGAATGTCA-GATCTGCTATCTTCGATTTGTTCCTTATAAGCACAGGG
1 G-TTCCCTATAAGCACAGGGATGCCATG--CTGATATCTTTGATCTGTTCCCTATAAGCACAGGG
* * * * *
20731891 ATGCCAAATCTGTTGTTTTCAACTTGTTCCTTATAAGCACAGGGATGCC--ATGCTGAAATCTTC
63 ATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATATTTTC
*
20731954 GA-TCT
127 AACT-T
** * * * * * * *
20731959 GCTTTACTGTAAGCACAGGAATGTCA-GATCTGCTATATTCGATCTGTTCCCTATAAGCATAGGG
1 G-TTCCCTATAAGCACAGGGATGCCATG--CTGATATCTTTGATCTGTTCCCTATAAGCACAGGG
* * *
20732023 ATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTC
63 ATGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATATTTTC
* *
20732086 GATCTA
127 -AACTT
* * * * * * * *
20732092 CTTCACTGTAAGCACAGGAATGTCA-GATCTGCTATCTTCGATCCGTTCCCTATAAGCACAGGGA
1 GTTCCCTATAAGCACAGGGATGCCATG--CTGATATCTTTGATCTGTTCCCTATAAGCACAGGGA
* * *
20732156 TGCCAAATCTGTTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAA
64 TGCCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAA
20732221 CTT
129 CTT
* * * * * *
20732224 GTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGTACAAGAAT
1 GTTCCCTATAAGCACAGGGATGCCATGCTGATATCTTTGATCTG-TTCCCTATAAGCACAGGGAT
* * * * * *
20732289 GTCAGATCTGCTATCTTCGA-TCTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAA
65 GCCAAATCTGATATTTTCAACT-TGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAA
20732353 CTT
129 CTT
* * * * *
20732356 GTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAAGAAT
1 GTTCCCTATAAGCACAGGGATGCCATGCTGATATCTTTGATCTG-TTCCCTATAAGCACAGGGAT
* * * * * * *
20732421 GTCAGATCTGCTATCTTCGA-TTCATTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAA
65 GCCAAATCTGATATTTTCAACTT-GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAA
20732485 CTT
129 CTT
* * * *
20732488 GTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTGGATCTGGTTCACTGTAAGCACAGG
1 GTTCCCTATAAGCACAGGGATGCCATGCTGATATCTTTGATCT-GTTCCCTATAAGCACAGG
20732550 AATGTCAGAT
Statistics
Matches: 1870, Mismatches: 242, Indels: 122
0.84 0.11 0.05
Matches are distributed among these distances:
129 2 0.00
130 19 0.01
131 157 0.08
132 1619 0.87
133 59 0.03
134 14 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (131 bp):
GTTCCCTATAAGCACAGGGATGCCATGCTGATATCTTTGATCTGTTCCCTATAAGCACAGGGATG
CCAAATCTGATATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT
T
Found at i:20732703 original size:68 final size:68
Alignment explanation
Indices: 20732624--20732822 Score: 305
Period size: 68 Copynumber: 2.9 Consensus size: 68
20732614 TCTTCTTCCA
* * *
20732624 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCTGGAAGAAGAGGT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
20732689 -TT
66 CTT
* *
20732691 GCTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGA
1 -CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
20732756 TCCTT
65 T-CTT
*
20732761 -TGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGGA-AAAAGA
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
20732823 AATTTGTAAT
Statistics
Matches: 121, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
67 6 0.05
68 113 0.93
70 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
CTT
Found at i:20733040 original size:44 final size:44
Alignment explanation
Indices: 20732840--20733739 Score: 485
Period size: 44 Copynumber: 20.6 Consensus size: 44
20732830 AATTTCCAGC
* * *
20732840 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCAT-CATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GCCCTTGCATCTTCGAT
* * * * * * ** ** *
20732884 CTATTTCTCAACTACTTAAGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCT-TGCATCTTCGA-T
* * * *
20732929 CTGTTACCCTACTGCTTAGGGGGTTAAG-GCTTGTAAAT-TTGGCT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCTTG--CATCTTCGAT
* *
20732973 -TGTTACCCTACTGTTTAGGGGGTTAAAGCCCAT-CATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTT-AAGCCCTTGCATCTTCGAT
* * ** ** *
20733016 CTGTTTCCCTACTGCTTAGAGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCT-TGCATCTTCGA-T
* * * ** *
20733061 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTAAATTCG-G
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCTTGCATCTTCGAT
*
20733103 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGAT
1 C-TGTTACCCTACTGCTTAGGGGGTT-AAGCCCTTGCATCTTCGAT
* * ** * *
20733148 CTGTTTCCCTACTGCTTAGGGGGATAAGATC-TGCA-ATTCAAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCTTGCATCTTCGAT
* * * *
20733190 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTT-CGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-CCCTTGCATCTTCGAT
* ** ** *
20733234 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCT-TGCATCTTCGA-T
* * * ** *
20733279 CTGTTACCCTACTG-TTAGGGGTTTAAG-GCTTGTAAATTC-AG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCTTGCATCTTCGAT
*
20733320 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGAT
1 C-TGTTACCCTACTGCTTAGGGGGTT-AAGCCCTTGCATCTTCGAT
* * ** * *
20733365 CTGTTTCCCTACTGCTTAGGGGGATAAGATC-TGCA-ATTCGGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCTTGCATCTTCGAT
* * * *
20733407 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTT-CGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-CCCTTGCATCTTCGAT
* ** ** *
20733451 CTGTT-TCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCT-TGCATCTTCGA-T
* * * ** *
20733495 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTAAATTC-AG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCTTGCATCTTCGAT
*
20733537 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGAT
1 C-TGTTACCCTACTGCTTAGGGGGTT-AAGCCCTTGCATCTTCGAT
* * ** * * *
20733582 CTGTTTCCCTACTGCTTA-GGGGATAAGATC-TACA-ATTCGGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCTTGCATCTTCGAT
* * * * *
20733623 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTT-CGTCTTTGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-CCCTTGCATCTTCGAT
* ** ** *
20733667 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCT-TGCATCTTCGA-T
*
20733712 CTGTTACCCTACTGCTTAGGGGTTTAAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAG
20733740 GCTTGTGAAT
Statistics
Matches: 645, Mismatches: 161, Indels: 99
0.71 0.18 0.11
Matches are distributed among these distances:
41 22 0.03
42 96 0.15
43 149 0.23
44 235 0.36
45 143 0.22
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.35
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGCCCTTGCATCTTCGAT
Found at i:20733078 original size:132 final size:133
Alignment explanation
Indices: 20732840--20733750 Score: 657
Period size: 132 Copynumber: 7.0 Consensus size: 133
20732830 AATTTCCAGC
* * * * * * * *
20732840 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCTCAACTACTTAAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
20732905 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTG
66 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTG
20732970 GCT
131 GCT
* *
20732973 -TGTTACCCTACTGTTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* *
20733037 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCG
66 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTG
20733102 GCT
131 GCT
20733105 -TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* * ** * * * * *
20733169 GGATAAGATCTG-CAA--TTCAATCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGT---C
66 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAG--GCTT-GTAAAT
* *
20733228 TTCGAT
128 TTGGCT
* * ** * * *
20733234 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTGTAAATCTTC-AGCCTGTTACCCTACTG-TTA
1 CTGTTACCCTACTGCTTAGGGGGTTAAAG-CCCAT-CATCTTCGA-TCTGTTTCCCTACTGCTTA
* * * * *** *
20733296 GGGGTTTAAG-GCTTGTAAA--TTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CA
63 GGGGGTTAAGATC-TGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAA
* *
20733357 TCTTCGAT
127 T-TTGGCT
* * ** * * * * *
20733365 CTGTTTCCCTACTGCTTAGGGGGAT-AAGATC-TGCA-ATTCGGTCTGTTACCCTACCGATTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCTACTGCTTAGG
* * ** * * *
20733427 GGTTTAAGACCCT-T-CGTCTTC-GATCTGTT-TCCTACTGCTTAGGGGGTTAA-GATCTGTAAA
65 GGGTTAAGA-TCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAGGGGGTTAAGGCT-TGTAAA
*
20733487 TCTTCAGC-
127 T-TT-GGCT
* * *** ** * *
20733495 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGT-AAATTC-AGCTTGTTACCCTACTGCTTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATC-TGTTTCCCTACTGCTTAGG
* ** * * * * * *
20733558 GGGTTAA-AGC-CCATCATCTTC-GATCTGTTTCCCTACTGCTTA-GGGGATAA-G-ATCTACAA
65 GGGTTAAGATCTGTA-AATCTTCAG-CCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTA-AA
*
20733617 TTCGG-T
127 TTTGGCT
* * * * * *
20733623 CTGTTACCCTACCGATTA-GGGGTTTAAGACCCTTCGTCTTTGATCTGTTTCCCTACTGCTTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
* *
20733687 GGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTGAATT
65 GGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATT
20733751 CACTGATTCT
Statistics
Matches: 621, Mismatches: 116, Indels: 83
0.76 0.14 0.10
Matches are distributed among these distances:
127 7 0.01
128 37 0.06
129 108 0.17
130 107 0.17
131 148 0.24
132 212 0.34
133 2 0.00
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.35
Consensus pattern (133 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTG
GCT
Found at i:20733230 original size:86 final size:86
Alignment explanation
Indices: 20732840--20733739 Score: 496
Period size: 86 Copynumber: 10.3 Consensus size: 86
20732830 AATTTCCAGC
* * * * * * * * *
20732840 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCTCAACTACTTAAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* **
20732905 GGTTAAGATCTGTAAATCTTCAGC
66 GGTTAAGATCTG-CAA--TTCAAT
* * * * * * *
20732929 CTGTTACCCTACTGCTTAGGGGGTTAAG-GCTTGTAAAT-TTGGCT-TGTTACCCTACTGTTTAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCCT-T-CATCTTCGATCTGTTTCCCTACTGCTTAG
** * *
20732991 GGGGTTAAAGCCCAT-CATCTTCGAT
64 GGGGTT-AAGATC-TGCA-ATTCAAT
* * * * * *
20733016 CTGTTTCCCTACTGCTTAGAGGGTTAAGA-TCTGTAAATCTTC-AGCCTGTTACCCTACTGCTTA
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCCT-T-CATCTTCGA-TCTGTTTCCCTACTGCTTA
* * * **
20733079 GGGGTTTAAG-GCTTGTAAATTC-GG
63 GGGGGTTAAGATC-TG-CAATTCAAT
*
20733103 CTTGTTACCCTACTGCTTAGGGGGTTAA-AGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAG
1 C-TGTTACCCTACTGCTTAGGGGGTTAAGA-CCCTTCATCTTCGATCTGTTTCCCTACTGCTTAG
*
20733167 GGGGATAAGATCTGCAATTCAAT
64 GGGGTTAAGATCTGCAATTCAAT
* * * *
20733190 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* **
20733255 GGTTAAGATCTGTAAATCTTCAGC
66 GGTTAAGATCTG-CAA--TTCAAT
* * * ** * *
20733279 CTGTTACCCTACTG-TTAGGGGTTTAAG--GCTTGTAAATTC-AGCTTGTTACCCTACTGCTTAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCCTT-CATCTTCGATC-TGTTTCCCTACTGCTTAG
** * *
20733340 GGGGTTAAAGCCCAT-CATCTTCGAT
64 GGGGTT-AAGATC-TGCA-ATTCAAT
* * * * * * * * *
20733365 CTGTTTCCCTACTGCTTAGGGGGATAAGA-TCTGCA-ATTCGGTCTGTTACCCTACCGATTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* * * ** *
20733428 GTTTAAGACCCTTCGTCTTCGAT
66 GGTTAAGA-TCTGC-AATTCAAT
* * * * *
20733451 CTGTT-TCCTACTGCTTAGGGGGTTAAGA-TCTGTAAATCTTC-AGCCTGTTACCCTACTGCTTA
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCCT-T-CATCTTCGA-TCTGTTTCCCTACTGCTTA
* * * *
20733513 GGGGTTTAAG-GCTTGTAAATTC-AG
63 GGGGGTTAAGATC-TG-CAATTCAAT
*
20733537 CTTGTTACCCTACTGCTTAGGGGGTTAA-AGCCCATCATCTTCGATCTGTTTCCCTACTGCTTA-
1 C-TGTTACCCTACTGCTTAGGGGGTTAAGA-CCCTTCATCTTCGATCTGTTTCCCTACTGCTTAG
* * **
20733600 GGGGATAAGATCTACAATTCGGT
64 GGGGTTAAGATCTGCAATTCAAT
* * * * *
20733623 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTTGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGACCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* **
20733688 GGTTAAGATCTGTAAATCTTCAGC
66 GGTTAAGATCTG-CAA--TTCAAT
*
20733712 CTGTTACCCTACTGCTTAGGGGTTTAAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAG
20733740 GCTTGTGAAT
Statistics
Matches: 633, Mismatches: 128, Indels: 100
0.74 0.15 0.12
Matches are distributed among these distances:
85 86 0.14
86 159 0.25
87 153 0.24
88 124 0.20
89 108 0.17
90 3 0.00
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.35
Consensus pattern (86 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGACCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGG
GGTTAAGATCTGCAATTCAAT
Found at i:20733326 original size:131 final size:129
Alignment explanation
Indices: 20733191--20733434 Score: 348
Period size: 131 Copynumber: 1.9 Consensus size: 129
20733181 CAATTCAATC
* * *
20733191 TGTTACCCTACCGATTA-GGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
1 TGTTACCCTACCGATTAGGGGGTTAAAG-CCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* *
20733255 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTG-TTAGGGGTTTAAGGCTTGTAAATTCA
65 GGATAAGATCTG-AAA--TTCAGCCTGTTACCCTACCGATTAGGGGTTTAAGGCTTGTAAATTCA
20733319 GCT
127 GCT
* *
20733322 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACCGATTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
* * *
20733387 GATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAG
66 GATAAGATCTGAAATTCAGCCTGTTACCCTACCGATTAGGGGTTTAAG
20733435 ACCCTTCGTC
Statistics
Matches: 101, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
128 17 0.17
129 13 0.13
130 2 0.02
131 60 0.59
132 9 0.09
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (129 bp):
TGTTACCCTACCGATTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
GATAAGATCTGAAATTCAGCCTGTTACCCTACCGATTAGGGGTTTAAGGCTTGTAAATTCAGCT
Found at i:20733377 original size:217 final size:218
Alignment explanation
Indices: 20732929--20733752 Score: 1417
Period size: 217 Copynumber: 3.8 Consensus size: 218
20732919 AATCTTCAGC
* * * * * * *
20732929 CTGTTACCCTACTGCTTAGGGGGTTAAG-GCTTGTAAATTTGG-CTTGTTACCCTACTGTTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGATAAGATC-TG-CAATTCGGTC-TGTTACCCTACCGATTAGG
* * * *
20732992 GGGTTAA-AGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGAGGGTTAAGATCTGTAAATCT
63 GGTTTAAGA-CCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCT
*
20733056 TCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTT
127 TCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTT
20733121 AGGGGGTTAAAGCCCATCATCTTCGAT
192 AGGGGGTTAAAGCCCATCATCTTCGAT
**
20733148 CTGTTTCCCTACTGCTTAGGGGGATAAGATCTGCAATTCAATCTGTTACCCTACCGATTAGGGGT
1 CTGTTTCCCTACTGCTTAGGGGGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
20733213 TTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
66 TTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
20733278 CCTGTTACCCTACTG-TTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGG
131 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGG
20733342 GGTTAAAGCCCATCATCTTCGAT
196 GGTTAAAGCCCATCATCTTCGAT
20733365 CTGTTTCCCTACTGCTTAGGGGGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
1 CTGTTTCCCTACTGCTTAGGGGGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
20733430 TTAAGACCCTTCGTCTTCGATCTGTTT-CCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
66 TTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
20733494 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGG
131 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGG
20733559 GGTTAAAGCCCATCATCTTCGAT
196 GGTTAAAGCCCATCATCTTCGAT
*
20733582 CTGTTTCCCTACTGCTTA-GGGGATAAGATCTACAATTCGGTCTGTTACCCTACCGATTAGGGGT
1 CTGTTTCCCTACTGCTTAGGGGGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
*
20733646 TTAAGACCCTTCGTCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
66 TTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
*
20733711 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTGAATTCA
131 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCA
20733753 CTGATTCTAG
Statistics
Matches: 581, Mismatches: 19, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
216 123 0.21
217 329 0.57
218 98 0.17
219 30 0.05
220 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (218 bp):
CTGTTTCCCTACTGCTTAGGGGGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
TTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
CCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGG
GGTTAAAGCCCATCATCTTCGAT
Found at i:20733578 original size:131 final size:128
Alignment explanation
Indices: 20733408--20733650 Score: 321
Period size: 131 Copynumber: 1.9 Consensus size: 128
20733398 CAATTCGGTC
* * *
20733408 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTT-CCTACTGCTTAGGGG
1 TGTTACCCTACCGATTAGGGGTTAAAGACCCATCATCTTCGATCTGTTTCCCTACTGCTTA-GGG
* * *
20733472 GTTAAGATCTGTA-AATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCA
65 GATAAGATC--TACAA--TTCAGCCTGTTACCCTACCGATTAGGGGTTTAAGGCTTGTAAATTCA
20733536 GCT
126 GCT
* *
20733539 TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
1 TGTTACCCTACCGATTA-GGGGTTAAAGACCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* *
20733603 GATAAGATCTACAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAG
65 GATAAGATCTACAATTCAGCCTGTTACCCTACCGATTAGGGGTTTAAG
20733651 ACCCTTCGTC
Statistics
Matches: 99, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
128 30 0.30
129 2 0.02
130 2 0.02
131 45 0.45
132 20 0.20
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.35
Consensus pattern (128 bp):
TGTTACCCTACCGATTAGGGGTTAAAGACCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
ATAAGATCTACAATTCAGCCTGTTACCCTACCGATTAGGGGTTTAAGGCTTGTAAATTCAGCT
Found at i:20733909 original size:66 final size:66
Alignment explanation
Indices: 20733803--20733929 Score: 227
Period size: 66 Copynumber: 1.9 Consensus size: 66
20733793 TCTATGCTTA
*
20733803 TGTCAAATGATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATGTGTTATGAAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATGTGTTATGAAT
20733868 G
66 G
* *
20733869 TGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATGTGTTAT
20733930 TATATGAATG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (66 bp):
TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATGTGTTATGAAT
G
Found at i:20735139 original size:6 final size:6
Alignment explanation
Indices: 20735130--20735167 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
20735120 TTTTTTTTTA
*
20735130 CCTTTG CCTTTG CCTTTG CCTTTT CCTTTG CCTTTG CC
1 CCTTTG CCTTTG CCTTTG CCTTTG CCTTTG CCTTTG CC
20735168 ATATAACTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.00, C:0.37, G:0.13, T:0.50
Consensus pattern (6 bp):
CCTTTG
Found at i:20737910 original size:46 final size:44
Alignment explanation
Indices: 20737858--20737946 Score: 124
Period size: 46 Copynumber: 2.0 Consensus size: 44
20737848 AGAACAGAAA
* * *
20737858 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCACATT--AAATATCGCATTGGAGACAGGAT
*
20737904 TGAGCCATGTAAGTCCACATTATATATCGCATTGGAGACAGGA
1 TGAGCCATGTAAGTCCACATTAAATATCGCATTGGAGACAGGA
20737947 AGAATTCATG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 19 0.49
46 20 0.51
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.27
Consensus pattern (44 bp):
TGAGCCATGTAAGTCCACATTAAATATCGCATTGGAGACAGGAT
Found at i:20741684 original size:12 final size:12
Alignment explanation
Indices: 20741662--20741704 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
20741652 AATAAAAAAC
20741662 AATACTATATATA
1 AATA-TATATATA
20741675 AATATATATATA
1 AATATATATATA
* * *
20741687 TATATACATAAA
1 AATATATATATA
20741699 AATATA
1 AATATA
20741705 CACTAATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
12 22 0.85
13 4 0.15
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (12 bp):
AATATATATATA
Found at i:20741940 original size:3 final size:3
Alignment explanation
Indices: 20741927--20742009 Score: 57
Period size: 3 Copynumber: 27.3 Consensus size: 3
20741917 GAGGGCATAT
**
20741927 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GGA ATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A ATA ATA ATA
* *
20741974 ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
20742010 AACAAAGCTC
Statistics
Matches: 63, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
2 8 0.13
3 45 0.71
4 9 0.14
5 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:20741951 original size:12 final size:12
Alignment explanation
Indices: 20741927--20742006 Score: 67
Period size: 12 Copynumber: 6.8 Consensus size: 12
20741917 GAGGGCATAT
20741927 ATAATAT-AATA
1 ATAATATAAATA
20741938 ATAATATAAATA
1 ATAATATAAATA
*
20741950 ATAATATATACATG
1 ATAATATA-A-ATA
**
20741964 AGGA-AT-AATA
1 ATAATATAAATA
20741974 ATAATATAAATA
1 ATAATATAAATA
* *
20741986 ATAGTAAAAATA
1 ATAATATAAATA
*
20741998 ATAAAATAA
1 ATAATATAA
20742007 TAAAACAAAG
Statistics
Matches: 53, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
10 4 0.08
11 10 0.19
12 32 0.60
13 3 0.06
14 4 0.08
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:20741957 original size:30 final size:32
Alignment explanation
Indices: 20741923--20741988 Score: 82
Period size: 36 Copynumber: 2.0 Consensus size: 32
20741913 TGAAGAGGGC
20741923 ATATATA-AT-ATAATAATAATATAAATAATA
1 ATATATACATGATAATAATAATATAAATAATA
20741953 ATATATACATGAGGAATAATAATAATATAAATAATA
1 ATATATACAT---G-ATAATAATAATATAAATAATA
20741989 GTAAAAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
30 7 0.23
31 2 0.07
36 21 0.70
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.33
Consensus pattern (32 bp):
ATATATACATGATAATAATAATATAAATAATA
Found at i:20742341 original size:25 final size:26
Alignment explanation
Indices: 20742309--20742358 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20742299 AAAAACTAGC
* *
20742309 CTTTCC-AAGAAACAAAAATAACCTT
1 CTTTCCAAAAAAACAAAAAAAACCTT
20742334 CTTTCCAAAAAAACAAAAAAAACCT
1 CTTTCCAAAAAAACAAAAAAAACCT
20742359 CCTCCAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.54, C:0.24, G:0.02, T:0.20
Consensus pattern (26 bp):
CTTTCCAAAAAAACAAAAAAAACCTT
Found at i:20742369 original size:21 final size:23
Alignment explanation
Indices: 20742343--20742390 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
20742333 TCTTTCCAAA
20742343 AAAACAAA-AA-AAACCTCCTCC
1 AAAACAAAGAACAAACCTCCTCC
* *
20742364 AAAACAAAGAACAATCCTTCTCC
1 AAAACAAAGAACAAACCTCCTCC
20742387 AAAA
1 AAAA
20742391 AACCAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 8 0.35
22 2 0.09
23 13 0.57
ACGTcount: A:0.56, C:0.29, G:0.02, T:0.12
Consensus pattern (23 bp):
AAAACAAAGAACAAACCTCCTCC
Found at i:20744260 original size:15 final size:16
Alignment explanation
Indices: 20744240--20744269 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20744230 TTATAAAATA
20744240 TATTTT-TTAAAATTT
1 TATTTTATTAAAATTT
20744255 TATTTTATTAAAATT
1 TATTTTATTAAAATT
20744270 ATTTATAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TATTTTATTAAAATTT
Found at i:20748154 original size:2 final size:2
Alignment explanation
Indices: 20748147--20748172 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
20748137 ATTATCTGCG
20748147 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
20748173 TATTTAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20749313 original size:14 final size:15
Alignment explanation
Indices: 20749280--20749318 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
20749270 AATAGTTCAT
20749280 ATGATCAATTATAAGC
1 ATGATCAATTAT-AGC
*
20749296 ATGATCAATTGT-GC
1 ATGATCAATTATAGC
20749310 ATGATCAAT
1 ATGATCAAT
20749319 ATCCATATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
16 11 0.50
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (15 bp):
ATGATCAATTATAGC
Found at i:20751707 original size:21 final size:21
Alignment explanation
Indices: 20751682--20751738 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
20751672 GTGGAAATCT
***
20751682 CACACGCCCGTGTGGTTAAGG
1 CACACGCCCGTGTGACCAAGG
* * *
20751703 GACACGACCGTCTGACCAAGG
1 CACACGCCCGTGTGACCAAGG
20751724 CACACGCCCGTGTGA
1 CACACGCCCGTGTGA
20751739 AAATCAAAAA
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.23, C:0.33, G:0.30, T:0.14
Consensus pattern (21 bp):
CACACGCCCGTGTGACCAAGG
Found at i:20762930 original size:27 final size:29
Alignment explanation
Indices: 20762900--20763015 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 29
20762890 AACGCAAGAG
*
20762900 TATATA-GTGAATC-CGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
* **
20762927 TATATATTTTCAGCTCGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
* **
20762956 TATATAATTTTCAGCTCGCACACTTAGTGC
1 TATAT-ATGTGAAGCTCGCACACTTAGTGC
* ** *
20762986 TATATATTTTCAGTTCGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
20763015 T
1 T
20763016 GTACAATTTT
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
27 6 0.07
28 3 0.04
29 43 0.53
30 29 0.36
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (29 bp):
TATATATGTGAAGCTCGCACACTTAGTGC
Found at i:20762968 original size:30 final size:29
Alignment explanation
Indices: 20762913--20763015 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
20762903 ATAGTGAATC
20762913 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
20762942 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
20762972 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
20763001 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
20763016 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:20762989 original size:59 final size:60
Alignment explanation
Indices: 20762912--20763045 Score: 207
Period size: 59 Copynumber: 2.2 Consensus size: 60
20762902 TATAGTGAAT
* * *
20762912 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA-TTTTCAGC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
* * *
20762971 TCGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTGTACAATTTTTAAAC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
20763031 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
20763046 CAATCTTGTC
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
59 47 0.70
60 20 0.30
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (60 bp):
CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
Found at i:20765459 original size:48 final size:48
Alignment explanation
Indices: 20765341--20765623 Score: 230
Period size: 48 Copynumber: 5.8 Consensus size: 48
20765331 AAAAGGGTAA
* * *
20765341 GATGCCGATGTCCCAGACATGGTCTTACATTGGCTCTCATATATCG-GTGTC
1 GATGCC-ATGTCCCAGACATGGTCTTACACTAGCTCTC--ATATCGAG-GCC
* * * * * *
20765392 GATGCCATGTTCCAAACATGGTCATACACTGGCTCGCATGTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAGGCC
* ** * *
20765440 GATGACATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAGGCC
* * * *
20765488 GATGTCGTGTTCCAAACATGGTCTTACACTAG-T-TCATATGTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA--TCGAGGCC
* * ** *
20765536 GATGCCATGTCCCAGACATGGCCTTAAACTAGCTCTCATATAAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAGGCC
** * * * *
20765584 GATGCCATGTTACAAACACGGTCTTACACTGGCTCACATA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA
20765624 ACCCTAGTAT
Statistics
Matches: 184, Mismatches: 43, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
46 5 0.03
47 1 0.01
48 139 0.76
49 2 0.01
50 31 0.17
51 6 0.03
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAGGCC
Found at i:20765535 original size:96 final size:96
Alignment explanation
Indices: 20765348--20765622 Score: 354
Period size: 96 Copynumber: 2.8 Consensus size: 96
20765338 TAAGATGCCG
* * **
20765348 ATGTCCCAGACATGGTCTTACATTGGCTCTCATATATCGGTG-TCGATGCCATGTTCCAAACATG
1 ATGTCCCAGACATGGTCTTACACTAGCTCTCATATA--AATGCT-GATGCCATGTTCCAAACATG
* * *
20765412 GTCATACACTGGCTCGCATGTCGAGGCCGATGAC
63 GTCTTACACTAGCTCACATGTCGAGGCCGATGAC
* *
20765446 ATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCTGATGTCGTGTTCCAAACATGGTC
1 ATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCTGATGCCATGTTCCAAACATGGTC
* * *
20765511 TTACACTAGTTCATATGTCGAGGCCGATGCC
66 TTACACTAGCTCACATGTCGAGGCCGATGAC
* * * * *
20765542 ATGTCCCAGACATGGCCTTAAACTAGCTCTCATATAAATGCCGATGCCATGTTACAAACACGGTC
1 ATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCTGATGCCATGTTCCAAACATGGTC
*
20765607 TTACACTGGCTCACAT
66 TTACACTAGCTCACAT
20765623 AACCCTAGTA
Statistics
Matches: 154, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
96 119 0.77
97 1 0.01
98 34 0.22
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (96 bp):
ATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCTGATGCCATGTTCCAAACATGGTC
TTACACTAGCTCACATGTCGAGGCCGATGAC
Found at i:20768207 original size:21 final size:21
Alignment explanation
Indices: 20768181--20768245 Score: 121
Period size: 21 Copynumber: 3.1 Consensus size: 21
20768171 CTATAATATG
*
20768181 ATTTTTGGACTGAATTGGACA
1 ATTTTTGGACTGAATTGAACA
20768202 ATTTTTGGACTGAATTGAACA
1 ATTTTTGGACTGAATTGAACA
20768223 ATTTTTGGACTGAATTGAACA
1 ATTTTTGGACTGAATTGAACA
20768244 AT
1 AT
20768246 GTGAGTATTA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (21 bp):
ATTTTTGGACTGAATTGAACA
Found at i:20780882 original size:26 final size:26
Alignment explanation
Indices: 20780846--20780954 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
20780836 CATGAAATTC
20780846 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
20780872 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
20780898 TTATCATG-AACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
20780923 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
20780949 TTATCA
1 TTATCA
20780955 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
25 25 0.31
26 56 0.69
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:20780923 original size:51 final size:52
Alignment explanation
Indices: 20780846--20780954 Score: 193
Period size: 51 Copynumber: 2.1 Consensus size: 52
20780836 CATGAAATTC
20780846 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
* *
20780898 TTATCATG-AACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
20780949 TTATCA
1 TTATCA
20780955 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
51 47 0.85
52 8 0.15
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.33
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
Found at i:20781809 original size:30 final size:30
Alignment explanation
Indices: 20781739--20781809 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 30
20781729 TTTCATTTAA
*
20781739 ATTTCGATTTAGTCCTTATTTATTTATTGT
1 ATTTCGATTTAGCCCTTATTTATTTATTGT
* * *
20781769 ATTACAATTTAGCCCCTT-TATTATTT-TTTT
1 ATTTCGATTTAG-CCCTTAT-TTATTTATTGT
20781799 ATTTCGATTTA
1 ATTTCGATTTA
20781810 TCCTTTTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
30 23 0.70
31 10 0.30
ACGTcount: A:0.23, C:0.13, G:0.07, T:0.58
Consensus pattern (30 bp):
ATTTCGATTTAGCCCTTATTTATTTATTGT
Found at i:20781908 original size:4 final size:4
Alignment explanation
Indices: 20781876--20781982 Score: 60
Period size: 4 Copynumber: 26.8 Consensus size: 4
20781866 ATTGCTTCCT
* **
20781876 TTTA TTTT TTTA TTT- TTTA TTTA CATA TTTA TTTA -TTA TTCCT- TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT--TA TTTA
* * * * * * *
20781923 TGTTA TTCA TTTA CTTG CTTA TTTA TTTA CTTA TTTA TATA -TTA TTCA
1 T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
20781971 TTTA TTTTA TTT
1 TTTA -TTTA TTT
20781983 TAATTCCTTT
Statistics
Matches: 77, Mismatches: 18, Indels: 16
0.69 0.16 0.14
Matches are distributed among these distances:
3 9 0.12
4 57 0.74
5 10 0.13
6 1 0.01
ACGTcount: A:0.22, C:0.07, G:0.02, T:0.68
Consensus pattern (4 bp):
TTTA
Found at i:20781975 original size:19 final size:19
Alignment explanation
Indices: 20781953--20781995 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
20781943 ATTTATTTAC
20781953 TTATTTATATATT-ATTCAT
1 TTATTT-TATATTAATTCAT
* *
20781972 TTATTTTATTTTAATTCCT
1 TTATTTTATATTAATTCAT
20781991 TTATT
1 TTATT
20781996 CATTTATTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATTTTATATTAATTCAT
Found at i:20782014 original size:23 final size:22
Alignment explanation
Indices: 20781925--20782011 Score: 63
Period size: 23 Copynumber: 3.9 Consensus size: 22
20781915 TCCTTTTATG
* *
20781925 TTATTCATTTACTTGCTTATTTAT
1 TTATT-ATTTATTTG-TTATTCAT
* *
20781949 TTACTTATTTATATATTATTCAT
1 TTA-TTATTTATTTGTTATTCAT
* *
20781972 TTA-T-TTTATTT-TAATTCCT
1 TTATTATTTATTTGTTATTCAT
20781991 TTATTCATTTATTTGTTATTC
1 TTATT-ATTTATTTGTTATTC
20782012 CTTCATTTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
19 9 0.18
20 7 0.14
21 1 0.02
22 7 0.14
23 15 0.30
24 9 0.18
25 2 0.04
ACGTcount: A:0.23, C:0.10, G:0.02, T:0.64
Consensus pattern (22 bp):
TTATTATTTATTTGTTATTCAT
Found at i:20782024 original size:23 final size:22
Alignment explanation
Indices: 20781967--20782024 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
20781957 TTATATATTA
20781967 TTCATTTATTTTATTTTAATTCC
1 TTCATTT-TTTTATTTTAATTCC
* ** *
20781990 TTTATTCATTTATTTGTTATTCC
1 TTCATTTTTTTATTT-TAATTCC
20782013 TTCATTTTTTTA
1 TTCATTTTTTTA
20782025 ATATTTAAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
22 7 0.26
23 20 0.74
ACGTcount: A:0.19, C:0.12, G:0.02, T:0.67
Consensus pattern (22 bp):
TTCATTTTTTTATTTTAATTCC
Found at i:20782217 original size:3 final size:3
Alignment explanation
Indices: 20782209--20782270 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
20782199 TTTATTCTCG
20782209 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
20782257 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
20782271 TACCTTTCCT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:20785519 original size:13 final size:13
Alignment explanation
Indices: 20785503--20785528 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20785493 GAAAGCTGAA
20785503 ATTAAAAGCCTGG
1 ATTAAAAGCCTGG
20785516 ATTAAAAGCCTGG
1 ATTAAAAGCCTGG
20785529 GTAGCAGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (13 bp):
ATTAAAAGCCTGG
Found at i:20802562 original size:51 final size:51
Alignment explanation
Indices: 20802504--20802781 Score: 211
Period size: 51 Copynumber: 5.7 Consensus size: 51
20802494 CATCGTGGCG
**
20802504 AATCTTATCTCCCTGAAGTTACAACGGAACAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAACAGATTAAAGCTACAAGTTACA
** * * ** * *
20802555 AATCTTATCTCTTTGAAGTTGCAGTAGAGTAGATTGAAG--A-TAG--A-A
1 AATCTTATCTCCCTGAAGTTACAGTGGAACAGATTAAAGCTACAAGTTACA
* *
20802600 AATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAACAGATTAAAGCTACAAGTTACA
* ** * * *
20802651 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG--A-TAG---CG
1 AATCTTATCTCCCTGAAGTTACAGTGGAACAGATTAAAGCTACAAGTTACA
* * * * * * * *
20802696 ATTCTTATTTCCCTGAAGTTGCAATAGAACAAATTAAAACTATAAGTTACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAACAGATTAAAGCTACAAGTTACA
* * *
20802747 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT
1 AATCTTATCTCCCTGAAGTTACAGTGGAACAGATT
20802782 GAAGATAGCG
Statistics
Matches: 169, Mismatches: 46, Indels: 24
0.71 0.19 0.10
Matches are distributed among these distances:
45 62 0.37
46 1 0.01
47 2 0.01
48 8 0.05
49 2 0.01
50 1 0.01
51 93 0.55
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (51 bp):
AATCTTATCTCCCTGAAGTTACAGTGGAACAGATTAAAGCTACAAGTTACA
Found at i:20802619 original size:45 final size:45
Alignment explanation
Indices: 20802570--20802926 Score: 203
Period size: 45 Copynumber: 7.5 Consensus size: 45
20802560 TATCTCTTTG
* *
20802570 AAGTTGCAGTAGAGTAGATTGAAGATAGAAAATCTTATTTCCCTA
1 AAGTTGCAGTGGAGCAGATTGAAGATAGAAAATCTTATTTCCCTA
* * * * * *
20802615 AAGTTACAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTG
1 AAGTTGCAGTGGAGCAGATTGAAG--A-TAG--A-AAATCTTATTTCCCTA
* ** * *
20802666 AAGTTGCAGTGGAGTAGATTGAAGATAGCGATTCTTATTTCCCTG
1 AAGTTGCAGTGGAGCAGATTGAAGATAGAAAATCTTATTTCCCTA
* * * * * * *
20802711 AAGTTGCAATAGAACAAATTAAAACTATAAGTTACAAATCTTATCTCCCTA
1 AAGTTGCAGTGGAGCAGATT-GAA-GAT-AG--A-AAATCTTATTTCCCTA
** *
20802762 AAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCTTA
1 AAGTTGCAGTGGAGCAGATTGAAGATAGAAAATCTTATTTCCCTA
* * * ** *
20802807 AAGTTACAGTGGAGGAAATTGAAGAT-GCGAATCTTATTTCCCCTG
1 AAGTTGCAGTGGAGCAGATTGAAGATAGAAAATCTTATTT-CCCTA
* * * * * * *
20802852 AAGTTGTAGTGGAACAGATTAAAGCTACGAGTTGCAAATTTTATCTCCCTG
1 AAGTTGCAGTGGAGCAGATTGAAGATA-GA-----AAATCTTATTTCCCTA
*
20802903 AAGTTGCAATGGAGCAGATTGAAG
1 AAGTTGCAGTGGAGCAGATTGAAG
20802927 TAACAAATTC
Statistics
Matches: 233, Mismatches: 59, Indels: 34
0.71 0.18 0.10
Matches are distributed among these distances:
44 13 0.06
45 105 0.45
46 2 0.01
47 4 0.02
48 8 0.03
49 3 0.01
50 3 0.01
51 87 0.37
52 8 0.03
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.30
Consensus pattern (45 bp):
AAGTTGCAGTGGAGCAGATTGAAGATAGAAAATCTTATTTCCCTA
Found at i:20802629 original size:96 final size:96
Alignment explanation
Indices: 20802501--20802819 Score: 458
Period size: 96 Copynumber: 3.3 Consensus size: 96
20802491 AGCCATCGTG
* * *
20802501 GCGAATCTTATCTCCCTGAAGTTACAACGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTC
1 GCGAATCTTATTTCCCTAAAGTTACAATGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTC
** *
20802566 TTTGAAGTTGCAGTAGAGTAGATTGAAGATA
66 CCTGAAGTTGCAGTGGAGTAGATTGAAGATA
** *
20802597 GAAAATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTC
1 GCGAATCTTATTTCCCTAAAGTTACAATGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTC
20802662 CCTGAAGTTGCAGTGGAGTAGATTGAAGATA
66 CCTGAAGTTGCAGTGGAGTAGATTGAAGATA
* * * * * * *
20802693 GCGATTCTTATTTCCCTGAAGTTGCAATAGAACAAATTAAAACTATAAGTTACAAATCTTATCTC
1 GCGAATCTTATTTCCCTAAAGTTACAATGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTC
* *
20802758 CCTAAAGTTGCAGTGGAGCAGATTGAAGATA
66 CCTGAAGTTGCAGTGGAGTAGATTGAAGATA
* *
20802789 GCGAATCTTATTTCCTTAAAGTTACAGTGGA
1 GCGAATCTTATTTCCCTAAAGTTACAATGGA
20802820 GGAAATTGAA
Statistics
Matches: 196, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 196 1.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.30
Consensus pattern (96 bp):
GCGAATCTTATTTCCCTAAAGTTACAATGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTC
CCTGAAGTTGCAGTGGAGTAGATTGAAGATA
Found at i:20802828 original size:141 final size:141
Alignment explanation
Indices: 20802651--20802926 Score: 374
Period size: 141 Copynumber: 2.0 Consensus size: 141
20802641 ACAAGTTACA
* * * * *
20802651 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCGATTCTTATTT-CCCTGAAGT
1 AATCTTATCTCCCTAAAGTTACAGTGGAGGAAATTGAAGAT-GCGAATCTTATTTCCCCTGAAGT
* *
20802715 TGCAATAGAACAAATTAAAACTATAAGTTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGA
65 TGCAATAGAACAAATTAAAACTACAAGTTACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGA
20802780 TTGAAGATAGCG
130 TTGAAGATAGCG
* *
20802792 AATCTTATTTCCTTAAAGTTACAGTGGAGGAAATTGAAGATGCGAATCTTATTTCCCCTGAAGTT
1 AATCTTATCTCCCTAAAGTTACAGTGGAGGAAATTGAAGATGCGAATCTTATTTCCCCTGAAGTT
* * * * * * * * *
20802857 GTAGTGGAACAGATTAAAGCTACGAGTTGCAAATTTTATCTCCCTGAAGTTGCAATGGAGCAGAT
66 GCAATAGAACAAATTAAAACTACAAGTTACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGAT
20802922 TGAAG
131 TGAAG
20802927 TAACAAATTC
Statistics
Matches: 116, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
140 12 0.10
141 104 0.90
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (141 bp):
AATCTTATCTCCCTAAAGTTACAGTGGAGGAAATTGAAGATGCGAATCTTATTTCCCCTGAAGTT
GCAATAGAACAAATTAAAACTACAAGTTACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGAT
TGAAGATAGCG
Found at i:20802912 original size:192 final size:188
Alignment explanation
Indices: 20802501--20802875 Score: 441
Period size: 192 Copynumber: 2.0 Consensus size: 188
20802491 AGCCATCGTG
* * ** * *
20802501 GCGAATCTTATCTCCCTGAAGTTACAACGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTC
1 GCGATTCTTATCTCCCTGAAGTTGCAATAGAACAAATTAAAACTACAAGTTACAAATCTTATCTC
** * *
20802566 TTTGAAGTTGCAGTAGAGTAGATTGAAGATAGAAAATCTTATTTCCCTAAAGTTACAGTGGAACA
66 CCTAAAGTTGCAGTAGAGCAGATTGAAGATAGAAAATCTTATTTCCCTAAAGTTACAGTGG-A-A
* * ** *
20802631 GATTAAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATA
129 GA-GAAA-CTACAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGATA
* *
20802693 GCGATTCTTATTTCCCTGAAGTTGCAATAGAACAAATTAAAACTATAAGTTACAAATCTTATCTC
1 GCGATTCTTATCTCCCTGAAGTTGCAATAGAACAAATTAAAACTACAAGTTACAAATCTTATCTC
* ** *
20802758 CCTAAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCTTAAAGTTACAGTGG-AG-
66 CCTAAAGTTGCAGTAGAGCAGATTGAAGATAGAAAATCTTATTTCCCTAAAGTTACAGTGGAAGA
** * * * *
20802821 GAAA-TTGAAGATGCGAATCTTATTTCCCCTGAAGTTGTAGTGGAACAGATTAAAG
131 GAAACTACAAGATACAAATCTTATCT-CCCTGAAGTTGCAGTGGAACAGATTAAAG
20802876 CTACGAGTTG
Statistics
Matches: 155, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
185 15 0.10
186 25 0.16
187 3 0.02
189 2 0.01
192 110 0.71
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (188 bp):
GCGATTCTTATCTCCCTGAAGTTGCAATAGAACAAATTAAAACTACAAGTTACAAATCTTATCTC
CCTAAAGTTGCAGTAGAGCAGATTGAAGATAGAAAATCTTATTTCCCTAAAGTTACAGTGGAAGA
GAAACTACAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGATA
Found at i:20803150 original size:14 final size:14
Alignment explanation
Indices: 20803127--20803160 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
20803117 TGAACAAAAA
20803127 ATAACAAAATAAAT
1 ATAACAAAATAAAT
*
20803141 ATAACCAAATAAAT
1 ATAACAAAATAAAT
20803155 A-AACAA
1 ATAACAA
20803161 TCCAAAGTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.71, C:0.12, G:0.00, T:0.18
Consensus pattern (14 bp):
ATAACAAAATAAAT
Found at i:20803895 original size:37 final size:36
Alignment explanation
Indices: 20803831--20803900 Score: 95
Period size: 37 Copynumber: 1.9 Consensus size: 36
20803821 AAACTGTTTG
* *
20803831 CTTTTATTTTTTTATTTACATATTTATTTATTTTTC
1 CTTTTATTTTTTCATTTACATACTTATTTATTTTTC
* *
20803867 CTTTTATTTTATTCATTTACTTGCTTATTTATTT
1 CTTTTATTTT-TTCATTTACATACTTATTTATTT
20803901 ACTTATTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
36 10 0.34
37 19 0.66
ACGTcount: A:0.19, C:0.10, G:0.01, T:0.70
Consensus pattern (36 bp):
CTTTTATTTTTTCATTTACATACTTATTTATTTTTC
Found at i:20803910 original size:16 final size:16
Alignment explanation
Indices: 20803834--20803915 Score: 56
Period size: 16 Copynumber: 4.8 Consensus size: 16
20803824 CTGTTTGCTT
*
20803834 TTATTTTTTTATTTAC
1 TTATTTATTTATTTAC
* *
20803850 ATATTTATTTATTTTTCC
1 TTATTTATTTA--TTTAC
*
20803868 TTTTATTTTATTCATTTAC
1 --TTA-TTTATTTATTTAC
**
20803887 TTGCTTATTTATTTAC
1 TTATTTATTTATTTAC
*
20803903 TTATTTATATATT
1 TTATTTATTTATT
20803916 ATTCTTTATT
Statistics
Matches: 49, Mismatches: 12, Indels: 10
0.69 0.17 0.14
Matches are distributed among these distances:
16 30 0.61
17 2 0.04
18 4 0.08
19 4 0.08
20 2 0.04
21 7 0.14
ACGTcount: A:0.22, C:0.09, G:0.01, T:0.68
Consensus pattern (16 bp):
TTATTTATTTATTTAC
Found at i:20803928 original size:19 final size:19
Alignment explanation
Indices: 20803906--20803944 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
20803896 TATTTACTTA
20803906 TTTATATATTATT-CTTTAT
1 TTTAT-TATTATTCCTTTAT
*
20803925 TTTATTTTTATTCCTTTAT
1 TTTATTATTATTCCTTTAT
20803944 T
1 T
20803945 CCTTTATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTATTATTATTCCTTTAT
Found at i:20804198 original size:3 final size:3
Alignment explanation
Indices: 20804096--20804179 Score: 147
Period size: 3 Copynumber: 29.0 Consensus size: 3
20804086 ATTGCTTTCA
20804096 ATT ATT ATT ATT ATT ATT ATT A-T ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
20804143 ATT ATT ATT ATT ATT ATT ATT ATT ATT -TT -TT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
20804180 TACCTTTCCT
Statistics
Matches: 79, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
2 6 0.08
3 73 0.92
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:20806957 original size:46 final size:46
Alignment explanation
Indices: 20806905--20807126 Score: 256
Period size: 46 Copynumber: 4.8 Consensus size: 46
20806895 TATTTGAGTA
*
20806905 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
20806951 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* * *
20806996 CATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
20807044 CCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
20807090 TCC-AAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20807127 GCGGGTTACA
Statistics
Matches: 148, Mismatches: 18, Indels: 20
0.80 0.10 0.11
Matches are distributed among these distances:
42 3 0.02
43 4 0.03
45 5 0.03
46 100 0.68
47 27 0.18
48 3 0.02
50 4 0.03
51 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:20807012 original size:93 final size:93
Alignment explanation
Indices: 20806904--20807072 Score: 284
Period size: 93 Copynumber: 1.8 Consensus size: 93
20806894 ATATTTGAGT
* *
20806904 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
20806969 AGTCCGAGTTCGTGAGATGTAACTAGGC
66 AGTCCGAGTTCGTGAGATGTAACTAGGC
* * *
20806997 ATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
*
20807062 AGTCTGAGTTC
66 AGTCCGAGTTC
20807073 ACTTATGGAT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAGATGTAACTAGGC
Found at i:20810031 original size:28 final size:29
Alignment explanation
Indices: 20809987--20810043 Score: 98
Period size: 28 Copynumber: 2.0 Consensus size: 29
20809977 TAAAAGTTCA
*
20809987 AAAAATTATAATAAAATATTTTTAAAATT
1 AAAAATCATAATAAAATATTTTTAAAATT
20810016 AAAAATCATAA-AAAATATTTTTAAAATT
1 AAAAATCATAATAAAATATTTTTAAAATT
20810044 TTTAAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 17 0.63
29 10 0.37
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (29 bp):
AAAAATCATAATAAAATATTTTTAAAATT
Found at i:20816190 original size:12 final size:12
Alignment explanation
Indices: 20816170--20816205 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
20816160 GGGCTAAAAA
*
20816170 ATCAATTGAACT
1 ATCAGTTGAACT
20816182 ATCAGTTGAACT
1 ATCAGTTGAACT
*
20816194 AACAGTTGAACT
1 ATCAGTTGAACT
20816206 GGTTTTGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.31
Consensus pattern (12 bp):
ATCAGTTGAACT
Found at i:20827246 original size:5 final size:5
Alignment explanation
Indices: 20827236--20827262 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
20827226 ATGAAAGATA
20827236 AAAAG AAAAG AAAAG AAAAG AAAAG AA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AA
20827263 GATATAACAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:20827910 original size:24 final size:24
Alignment explanation
Indices: 20827882--20827938 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
20827872 GCCATGTAGC
20827882 CACGCACGTCTGTGTGGCTTGGGA
1 CACGCACGTCTGTGTGGCTTGGGA
20827906 CACGCACGTCTGTGTGGCTTGGGA
1 CACGCACGTCTGTGTGGCTTGGGA
20827930 CACGCACGT
1 CACGCACGT
20827939 GTCCTCAGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.14, C:0.28, G:0.35, T:0.23
Consensus pattern (24 bp):
CACGCACGTCTGTGTGGCTTGGGA
Found at i:20829022 original size:19 final size:19
Alignment explanation
Indices: 20828998--20829037 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
20828988 TGTGTCATCA
20828998 TAAATTCATAGGCATAACT
1 TAAATTCATAGGCATAACT
*
20829017 TAAATTTATAGGCATAACT
1 TAAATTCATAGGCATAACT
20829036 TA
1 TA
20829038 CACATTTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGGCATAACT
Found at i:20836342 original size:40 final size:40
Alignment explanation
Indices: 20836265--20836488 Score: 319
Period size: 40 Copynumber: 5.5 Consensus size: 40
20836255 ACCCAAGTAT
* *
20836265 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* *
20836304 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
20836344 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
20836384 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
20836427 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
20836467 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
20836489 CATCCGAATA
Statistics
Matches: 168, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
39 12 0.07
40 119 0.71
41 1 0.01
43 36 0.21
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:20836461 original size:83 final size:80
Alignment explanation
Indices: 20836265--20836488 Score: 326
Period size: 83 Copynumber: 2.8 Consensus size: 80
20836255 ACCCAAGTAT
* * * *
20836265 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
20836329 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* *
20836344 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
20836408 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
*
20836427 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
20836489 CATCCGAATA
Statistics
Matches: 130, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
79 13 0.10
80 49 0.38
83 68 0.52
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:20843561 original size:20 final size:19
Alignment explanation
Indices: 20843515--20843591 Score: 84
Period size: 19 Copynumber: 4.1 Consensus size: 19
20843505 ATTTGTAAAT
*
20843515 AGTAATTCATTCG-ATAAC
1 AGTAATTCATCCGTATAAC
*
20843533 AGTAATTCATCCGTATGAAT
1 AGTAATTCATCCGTAT-AAC
* *
20843553 AGTACTTCATCCATATAAC
1 AGTAATTCATCCGTATAAC
* *
20843572 AGTAATTGATCCGTAAAAC
1 AGTAATTCATCCGTATAAC
20843591 A
1 A
20843592 CATAGCTTTT
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
18 12 0.25
19 20 0.42
20 16 0.33
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (19 bp):
AGTAATTCATCCGTATAAC
Found at i:20843583 original size:19 final size:19
Alignment explanation
Indices: 20843515--20843583 Score: 68
Period size: 20 Copynumber: 3.6 Consensus size: 19
20843505 ATTTGTAAAT
* *
20843515 AGTAATTCATTC-GATAAC
1 AGTAATTCATCCATATAAC
* *
20843533 AGTAATTCATCCGTATGAAT
1 AGTAATTCATCCATAT-AAC
*
20843553 AGTACTTCATCCATATAAC
1 AGTAATTCATCCATATAAC
*
20843572 AGTAATTGATCC
1 AGTAATTCATCC
20843584 GTAAAACACA
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
18 11 0.27
19 14 0.34
20 16 0.39
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (19 bp):
AGTAATTCATCCATATAAC
Found at i:20843790 original size:23 final size:25
Alignment explanation
Indices: 20843750--20843853 Score: 117
Period size: 24 Copynumber: 4.2 Consensus size: 25
20843740 AGCTCCTCTT
*
20843750 GAGCTGATAGACAGTAAGCT-TTATT
1 GAGCTGATAGACAGTAAGCTCTTA-C
*
20843775 GAGCTGA-A-ACAGTAAGCTCTGAC
1 GAGCTGATAGACAGTAAGCTCTTAC
*
20843798 GAGCTGAGA-ACAGTAAGCTCTTAC
1 GAGCTGATAGACAGTAAGCTCTTAC
* *
20843822 GAGCTGATATATCAGTAAGCTCATAC
1 GAGCTGATAGA-CAGTAAGCTCTTAC
20843848 GAGCTG
1 GAGCTG
20843854 CGGTGAGTGC
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
23 17 0.24
24 26 0.37
25 8 0.11
26 19 0.27
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (25 bp):
GAGCTGATAGACAGTAAGCTCTTAC
Found at i:20843852 original size:50 final size:48
Alignment explanation
Indices: 20843750--20843853 Score: 124
Period size: 50 Copynumber: 2.1 Consensus size: 48
20843740 AGCTCCTCTT
* *
20843750 GAGCTGATAGACAGTAAGCTTTATTGAGCTGAAACAGTAAGCTCTGAC
1 GAGCTGAGAGACAGTAAGCTTTATCGAGCTGAAACAGTAAGCTCTGAC
20843798 GAGCTGAGA-ACAGTAAGCTCTTA-CGAGCTGATATATCAGTAAGCTCAT-AC
1 GAGCTGAGAGACAGTAAGCT-TTATCGAGCTGA-A-A-CAGTAAGCTC-TGAC
20843848 GAGCTG
1 GAGCTG
20843854 CGGTGAGTGC
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
47 17 0.35
48 12 0.24
49 1 0.02
50 18 0.37
51 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (48 bp):
GAGCTGAGAGACAGTAAGCTTTATCGAGCTGAAACAGTAAGCTCTGAC
Found at i:20847249 original size:18 final size:18
Alignment explanation
Indices: 20847222--20847256 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
20847212 ACTTATTTGG
*
20847222 TTTCTTCTTTCCCTTAGC
1 TTTCTACTTTCCCTTAGC
*
20847240 TTTCTACTTTGCCTTAG
1 TTTCTACTTTCCCTTAG
20847257 AGGACGATGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.29, G:0.09, T:0.54
Consensus pattern (18 bp):
TTTCTACTTTCCCTTAGC
Found at i:20851210 original size:35 final size:35
Alignment explanation
Indices: 20851171--20851284 Score: 151
Period size: 35 Copynumber: 3.3 Consensus size: 35
20851161 CAAGATAACT
*
20851171 TCACATATAACCGAATATACAAGTTCAATATAAGC
1 TCACATGTAACCGAATATACAAGTTCAATATAAGC
* *
20851206 TCACATGTAATCAAATACT-CAAGTTCAATATAA-C
1 TCACATGTAACCGAATA-TACAAGTTCAATATAAGC
* *
20851240 TTCACATGCAACTGAATATACAAGTTCAATATAAGC
1 -TCACATGTAACCGAATATACAAGTTCAATATAAGC
20851276 TCACATGTA
1 TCACATGTA
20851285 CTTACCTATG
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
34 2 0.03
35 63 0.94
36 2 0.03
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (35 bp):
TCACATGTAACCGAATATACAAGTTCAATATAAGC
Found at i:20856475 original size:21 final size:21
Alignment explanation
Indices: 20856449--20856488 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
20856439 AATGAAATCC
*
20856449 ATTTTCTTCATTTTTCTCATG
1 ATTTTCTTCAGTTTTCTCATG
*
20856470 ATTTTCTTTAGTTTTCTCA
1 ATTTTCTTCAGTTTTCTCA
20856489 CCAACCAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.17, G:0.05, T:0.62
Consensus pattern (21 bp):
ATTTTCTTCAGTTTTCTCATG
Found at i:20859211 original size:40 final size:39
Alignment explanation
Indices: 20859166--20859295 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
20859156 CGGAATACAA
20859166 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
20859206 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
20859246 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
20859286 CCGGATATAA
1 CCGGATATAA
20859296 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:20867275 original size:40 final size:39
Alignment explanation
Indices: 20867230--20867359 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
20867220 CGGAATACAA
20867230 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
20867270 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
20867310 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
20867350 CCGGATATAA
1 CCGGATATAA
20867360 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:20874957 original size:48 final size:49
Alignment explanation
Indices: 20874905--20875086 Score: 143
Period size: 50 Copynumber: 3.6 Consensus size: 49
20874895 AGCTATCTTT
* * * *
20874905 TACACATAGTGGCCTGCACT-GTACCACACATGTGATC-AAGCTATCGGG
1 TACACATAGTAGCCTGCACTAGTACCACACATGCGACCTAA-CCATCGGG
* * *
20874953 TACACTTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGG
1 TACACATAGTAGCCTGCAC-TAGTACCACACATGCGACCTAACCATCGGG
* * * * ****
20875003 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATTTTA
1 TACACATAGTAGCCTGCAC-TAGTACCACACATGCGACCT--AACCATCGGG
* *
20875055 AACACATAGTAGCCTGCACATAGTACTACACA
1 TACACATAGTAGCCTGCAC-TAGTACCACACA
20875087 CGTGTTCTCA
Statistics
Matches: 113, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
48 17 0.15
49 1 0.01
50 57 0.50
51 2 0.02
52 36 0.32
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (49 bp):
TACACATAGTAGCCTGCACTAGTACCACACATGCGACCTAACCATCGGG
Found at i:20875005 original size:50 final size:51
Alignment explanation
Indices: 20874951--20875088 Score: 179
Period size: 50 Copynumber: 2.7 Consensus size: 51
20874941 CAAGCTATCG
* *
20874951 GGTACACTTAGTAGCCTGCACTTAGTACTACACATGCGACCT-AACCATCT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAAACCATCT
* * *
20875001 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATTT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCT-AAACCATCT
*** *
20875053 TAAACACATAGTAGCCTGCACATAGTACTACACACG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACG
20875089 TGTTCTCACA
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
50 39 0.51
52 38 0.49
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (51 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAAACCATCT
Found at i:20875071 original size:52 final size:50
Alignment explanation
Indices: 20874954--20875090 Score: 175
Period size: 52 Copynumber: 2.7 Consensus size: 50
20874944 GCTATCGGGT
* * * **
20874954 ACACTTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGGT
1 ACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGAA
* * *
20875004 ACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATTTTAA
1 ACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATCTGAA
*
20875056 ACACATAGTAGCCTGCACATAGTACTACACACGTG
1 ACACATAGTAGCCTGCACTTAGTACTACACACGTG
20875091 TTCTCACAAC
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
50 36 0.47
52 40 0.53
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.24
Consensus pattern (50 bp):
ACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGAA
Found at i:20886531 original size:60 final size:60
Alignment explanation
Indices: 20886457--20886579 Score: 151
Period size: 60 Copynumber: 2.0 Consensus size: 60
20886447 ACTGTGTTAA
* * *
20886457 TATGGGCAAGGCCCAATATA-TCTCGA-CTTGTAATTGGGCTACGGCCCAGATTGATACTGG
1 TATGGGCAAGGCCCAATATACTCT-GATATTGTAA-GGGGCTACGGCCCAGATTAATACTGG
* * * *
20886517 TATGGGCTAGGCCCAGTATACTCTGATATTGTAAGGGGCTATGGCCCAGATTAATATTGG
1 TATGGGCAAGGCCCAATATACTCTGATATTGTAAGGGGCTACGGCCCAGATTAATACTGG
20886577 TAT
1 TAT
20886580 AGGATAAGGC
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
60 45 0.83
61 9 0.17
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (60 bp):
TATGGGCAAGGCCCAATATACTCTGATATTGTAAGGGGCTACGGCCCAGATTAATACTGG
Found at i:20893189 original size:30 final size:29
Alignment explanation
Indices: 20893155--20893214 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
20893145 TTCCCGAGCC
20893155 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATG-AAAAGTT
* * * *
20893185 TAGGGGCAAAATTGTAATTTTGAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGAAAAGTT
20893214 T
1 T
20893215 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.30
Consensus pattern (29 bp):
TAGGGGAAAAAGTGTAAATATGAAAAGTT
Found at i:20893791 original size:64 final size:64
Alignment explanation
Indices: 20893705--20893893 Score: 184
Period size: 67 Copynumber: 2.9 Consensus size: 64
20893695 TGTAATACGG
* *
20893705 GATATATGTAGCTAGGTCGCATGGGTTGTACTATGTGTACACCATGTAGACAAGAGAGCTACAA
1 GATAAATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACAA
* * * * * * * * *
20893769 GATAAATGTAGCTAGGTTGCATGTGTGGTTCCAGGTGAAGGACACCATGTAAACAAAAGAGCTAT
1 GATAAATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTAC
*
20893834 GA
63 AA
* * * *
20893836 GATAAA-GTGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 GATAAATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
20893894 CAAAATTATG
Statistics
Matches: 97, Mismatches: 24, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
63 18 0.19
64 28 0.29
66 22 0.23
67 29 0.30
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.25
Consensus pattern (64 bp):
GATAAATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACAA
Found at i:20901430 original size:66 final size:64
Alignment explanation
Indices: 20901326--20901450 Score: 153
Period size: 66 Copynumber: 1.9 Consensus size: 64
20901316 TGTTCCAGAC
*
20901326 CGTGTGAAAATAGAAGGGTATACTGACTTATGCAACACGACCATGTCACACGCCCGTGTGCTAGG
1 CGTGTGAAAATAG-AGGGTATACTGACTTATACAACACGACCA-GTCACACGCCCGTGTGCTAGG
20901391 T
64 T
* * * * *
20901392 CGTGTGAAAATTAG-GTGGTATACTGACTTGTACCACACGGCTAGTCACACGTCCGTGTG
1 CGTGTGAAAA-TAGAG-GGTATACTGACTTATACAACACGACCAGTCACACGCCCGTGTG
20901451 TCATACTGAC
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
65 16 0.31
66 32 0.63
67 3 0.06
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (64 bp):
CGTGTGAAAATAGAGGGTATACTGACTTATACAACACGACCAGTCACACGCCCGTGTGCTAGGT
Found at i:20908266 original size:6 final size:6
Alignment explanation
Indices: 20908257--20908282 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
20908247 AAAAATTCAA
20908257 AAAATT AAAATT AAAATT AAAATT AA
1 AAAATT AAAATT AAAATT AAAATT AA
20908283 TTTGGGTTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AAAATT
Found at i:20910052 original size:40 final size:39
Alignment explanation
Indices: 20910005--20910080 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 39
20909995 TATTATAATC
*
20910005 TCGCACACTAAGTGCCGTATATAGCCAAAGCTATTCTGAT
1 TCGCACACTAAATGCCGTATATAGCCAAAGCT-TTCTGAT
** *
20910045 TCGCACACTAAATGCTTTATATAGCCGAAGCTTTCT
1 TCGCACACTAAATGCCGTATATAGCCAAAGCTTTCT
20910081 CGATACGGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
39 4 0.12
40 28 0.88
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (39 bp):
TCGCACACTAAATGCCGTATATAGCCAAAGCTTTCTGAT
Found at i:20923036 original size:30 final size:30
Alignment explanation
Indices: 20923001--20923059 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
20922991 CACACGCGTG
*
20923001 TGTCACACACGACCTAGACACACGGCCGTT
1 TGTCACACACGACCTAGACACACGCCCGTT
20923031 TGTCACACACGACCTAGACACACGCCCGT
1 TGTCACACACGACCTAGACACACGCCCGT
20923060 GTGCCTACCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.27, C:0.39, G:0.19, T:0.15
Consensus pattern (30 bp):
TGTCACACACGACCTAGACACACGCCCGTT
Found at i:20923643 original size:2 final size:2
Alignment explanation
Indices: 20923638--20923671 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
20923628 ACTCTCATCT
20923638 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20923672 ACGAATAGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:20923905 original size:47 final size:45
Alignment explanation
Indices: 20923800--20923918 Score: 134
Period size: 47 Copynumber: 2.6 Consensus size: 45
20923790 GGGTAGGATA
* *
20923800 CCGATGTCATGTCCTAGACATGGT-TTTACACTGGCTCATCTCGTAG
1 CCGATG-CATGTCCTAGACAT-GTCTTAAAACTGGCTCATCTCGTAG
* *
20923846 TCGATACATGTCCTAGACATGTCTTAAAACTGGCTTACATCTCG-AGG
1 CCGATGCATGTCCTAGACATGTCTTAAAACTGGC-T-CATCTCGTA-G
*
20923893 CCGATGCATGTCCCAGACATGTCTTA
1 CCGATGCATGTCCTAGACATGTCTTA
20923919 CACTAGCTCT
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
44 2 0.03
45 23 0.37
46 6 0.10
47 31 0.50
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (45 bp):
CCGATGCATGTCCTAGACATGTCTTAAAACTGGCTCATCTCGTAG
Found at i:20959716 original size:26 final size:26
Alignment explanation
Indices: 20959670--20959722 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20959660 TCAAACATGC
*
20959670 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAAGGGT
* *
20959696 ATTTCGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAAC-CCTAAGGGT
20959722 A
1 A
20959723 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAAGGGT
Found at i:20963015 original size:40 final size:40
Alignment explanation
Indices: 20962956--20963048 Score: 136
Period size: 40 Copynumber: 2.4 Consensus size: 40
20962946 TAACAACCAG
20962956 CACGAATGCCTTCGAGACTTAACCCGGTTATAATAACCCA
1 CACGAATGCCTTCGAGACTTAACCCGGTTATAATAACCCA
* * *
20962996 CACGAATGCCTTTGGGACTTAACCCGGTTATAATAA-CTA
1 CACGAATGCCTTCGAGACTTAACCCGGTTATAATAACCCA
20963035 GCAC-AATGCCTTCG
1 -CACGAATGCCTTCG
20963049 GATCTTAGTC
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
39 11 0.23
40 37 0.77
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (40 bp):
CACGAATGCCTTCGAGACTTAACCCGGTTATAATAACCCA
Found at i:20963072 original size:39 final size:40
Alignment explanation
Indices: 20963019--20963105 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
20963009 GGGACTTAAC
* *
20963019 CCGGTTATAATAACTAGCAC-AATGCCTTCGGATCTTAGT
1 CCGGATATAATAACTAGCACAAATGCCTTCGGATCTGAGT
*
20963058 CCGGATATAGTAACTAGCACAAATGCCTTCGGATCTGAGT
1 CCGGATATAATAACTAGCACAAATGCCTTCGGATCTGAGT
20963098 CCGGATAT
1 CCGGATAT
20963106 CATCCGAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
39 18 0.41
40 26 0.59
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (40 bp):
CCGGATATAATAACTAGCACAAATGCCTTCGGATCTGAGT
Found at i:20966223 original size:12 final size:12
Alignment explanation
Indices: 20966206--20966236 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
20966196 AGTACTACCT
20966206 CGGCCTCGACCA
1 CGGCCTCGACCA
20966218 CGGCCTCGACCA
1 CGGCCTCGACCA
*
20966230 TGGCCTC
1 CGGCCTC
20966237 TTCCCTGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.48, G:0.26, T:0.13
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:20967813 original size:21 final size:20
Alignment explanation
Indices: 20967775--20967817 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
20967765 ATCCCAGTCC
20967775 CATGCATCAGATAATAACAA
1 CATGCATCAGATAATAACAA
20967795 CATGCATGCAG-TAAATAACAA
1 CATGCAT-CAGAT-AATAACAA
20967816 CA
1 CA
20967818 GTCAAACATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.49, C:0.21, G:0.12, T:0.19
Consensus pattern (20 bp):
CATGCATCAGATAATAACAA
Found at i:20967866 original size:25 final size:27
Alignment explanation
Indices: 20967829--20967881 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
20967819 TCAAACATGC
20967829 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
20967855 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
20967881 A
1 A
20967882 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:20970665 original size:46 final size:46
Alignment explanation
Indices: 20970612--20970787 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
20970602 TATTTGGGCA
20970612 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
20970658 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
20970705 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
20970751 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20970788 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:20970767 original size:93 final size:93
Alignment explanation
Indices: 20970608--20970779 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
20970598 GGGATATTTG
* *
20970608 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
20970673 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
20970701 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
20970766 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
20970780 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:20973755 original size:15 final size:15
Alignment explanation
Indices: 20973735--20973803 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
20973725 GTATCTTGGG
20973735 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
20973750 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
20973765 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
20973780 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
20973795 TTTCTTTAT
1 TTTCTTTAT
20973804 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:20973804 original size:30 final size:30
Alignment explanation
Indices: 20973726--20973813 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
20973716 CATAGTATCG
* * * *
20973726 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
20973756 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
20973786 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
20973814 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:20976252 original size:46 final size:46
Alignment explanation
Indices: 20976199--20976374 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
20976189 TATTTGGGCA
20976199 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
20976245 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
20976292 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
20976338 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20976375 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:20976354 original size:93 final size:93
Alignment explanation
Indices: 20976195--20976366 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
20976185 GGGATATTTG
* *
20976195 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
20976260 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
20976288 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
20976353 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
20976367 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:20979338 original size:26 final size:26
Alignment explanation
Indices: 20979309--20979360 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
20979299 ATTTAACTAG
20979309 ATGAGCTCATCATTGAACAATTCATT
1 ATGAGCTCATCATTGAACAATTCATT
20979335 ATGAGCTCATCATTGAACAATTCATT
1 ATGAGCTCATCATTGAACAATTCATT
20979361 CATACATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (26 bp):
ATGAGCTCATCATTGAACAATTCATT
Found at i:20981882 original size:36 final size:36
Alignment explanation
Indices: 20981835--20981908 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
20981825 ATAGCATTAG
20981835 TCTTATATGAGCTCATCATTTCAAGCATTTCTATTT
1 TCTTATATGAGCTCATCATTTCAAGCATTTCTATTT
20981871 TCTTATATGAGCTCATCATTTCAAGCATTTCTATTT
1 TCTTATATGAGCTCATCATTTCAAGCATTTCTATTT
20981907 TC
1 TC
20981909 GTTTCTCATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.24, C:0.20, G:0.08, T:0.47
Consensus pattern (36 bp):
TCTTATATGAGCTCATCATTTCAAGCATTTCTATTT
Found at i:20986294 original size:37 final size:37
Alignment explanation
Indices: 20986244--20986318 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
20986234 GAATTTACGA
20986244 ATTACAACTTGAACCAGTAATACAAAATTAATTAACT
1 ATTACAACTTGAACCAGTAATACAAAATTAATTAACT
*
20986281 ATTACAACTTGAACTAGTAATACAAAATTAATTAACT
1 ATTACAACTTGAACCAGTAATACAAAATTAATTAACT
20986318 A
1 A
20986319 AGTTTTAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.49, C:0.15, G:0.05, T:0.31
Consensus pattern (37 bp):
ATTACAACTTGAACCAGTAATACAAAATTAATTAACT
Found at i:20988048 original size:38 final size:35
Alignment explanation
Indices: 20987989--20988089 Score: 120
Period size: 31 Copynumber: 2.9 Consensus size: 35
20987979 TCAATCATGC
*
20987989 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
20988028 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
*
20988059 ACTGGGCCGAAGCCTTTTCAGATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
20988090 ACTAGGCCGA
Statistics
Matches: 56, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
31 26 0.46
33 3 0.05
34 1 0.02
36 1 0.02
38 14 0.25
39 11 0.20
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.39
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:20988050 original size:31 final size:31
Alignment explanation
Indices: 20988012--20988106 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 31
20988002 CCTTTTCATA
*
20988012 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
20988043 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
* *
20988074 TTTCAGATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
20988105 TT
1 TT
20988107 ACTGTAAACG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:20988377 original size:23 final size:24
Alignment explanation
Indices: 20988317--20988416 Score: 166
Period size: 24 Copynumber: 4.2 Consensus size: 24
20988307 GGCCTAGACT
*
20988317 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
20988341 CTTTCAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
20988365 CTTTT-ATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
20988388 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
20988412 CTTTT
1 CTTTT
20988417 TCACTTCCTC
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
23 23 0.32
24 49 0.68
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:20988377 original size:47 final size:48
Alignment explanation
Indices: 20988317--20988416 Score: 166
Period size: 47 Copynumber: 2.1 Consensus size: 48
20988307 GGCCTAGACT
20988317 CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCC
* **
20988365 CTTTT-ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCC
20988412 CTTTT
1 CTTTT
20988417 TCACTTCCTC
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
47 44 0.90
48 5 0.10
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (48 bp):
CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCC
Done.