Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 80 of 438
Found at i:21591870 original size:39 final size:39
Alignment explanation
Indices: 21591790--21591900 Score: 114
Period size: 39 Copynumber: 2.8 Consensus size: 39
21591780 TTTTACAAAT
* * ** * * *
21591790 TATTTGGTTATAAAGTTGAGTTTTCAGGAGGAATTTGAG
1 TATTTGGTTACAAAGTTGAGTTTCCAATATGAAGTTAAG
*
21591829 TATTTTGTTACAAAGTTGAGTTTCCAATATGAAGTTAAG
1 TATTTGGTTACAAAGTTGAGTTTCCAATATGAAGTTAAG
* * * *
21591868 TATTGGGATACAAAATTGGGTTTCCAATATGAA
1 TATTTGGTTACAAAGTTGAGTTTCCAATATGAA
21591901 TTTGAGTAAT
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 59 1.00
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.39
Consensus pattern (39 bp):
TATTTGGTTACAAAGTTGAGTTTCCAATATGAAGTTAAG
Found at i:21592179 original size:7 final size:7
Alignment explanation
Indices: 21592167--21592191 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
21592157 TTAAAAAAAT
21592167 TAATTTA
1 TAATTTA
21592174 TAATTTA
1 TAATTTA
21592181 TAATTTA
1 TAATTTA
21592188 TAAT
1 TAAT
21592192 GGCAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TAATTTA
Found at i:21595288 original size:18 final size:18
Alignment explanation
Indices: 21595267--21595304 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
21595257 TACAAAACAA
21595267 TTAAAATAATTT-TAAAAT
1 TTAAAAT-ATTTATAAAAT
21595285 TTAAAATATTTATAAAAT
1 TTAAAATATTTATAAAAT
21595303 TT
1 TT
21595305 CCAAAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAAAATATTTATAAAAT
Found at i:21595313 original size:18 final size:17
Alignment explanation
Indices: 21595274--21595316 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
21595264 CAATTAAAAT
21595274 AATTT-TAAAATTTAAA
1 AATTTATAAAATTTAAA
*
21595290 ATATTTATAAAATTTCCAA
1 A-ATTTATAAAATTT-AAA
21595309 AATTTATA
1 AATTTATA
21595317 TTTTAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 1 0.04
17 4 0.17
18 15 0.65
19 3 0.13
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTTATAAAATTTAAA
Found at i:21599909 original size:2 final size:2
Alignment explanation
Indices: 21599902--21599932 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
21599892 AGTTCAATAC
21599902 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
21599933 AACAAATGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:21602066 original size:56 final size:56
Alignment explanation
Indices: 21601980--21602115 Score: 218
Period size: 56 Copynumber: 2.4 Consensus size: 56
21601970 ATCATGGCTT
* * *
21601980 CGATATATGTGTGCGATTAATACCATGTTTTATACGTTGGCATCGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTC
* *
21602036 CGATAAATGTGTGCGAGTAAGACCACGTTTTATATGTTGGCATCGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTC
*
21602092 AGATATATGTGTGCGAGTAAGACC
1 CGATATATGTGTGCGAGTAAGACC
21602116 CTGTCTGGGA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 73 1.00
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.33
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTC
Found at i:21602133 original size:56 final size:56
Alignment explanation
Indices: 21601981--21602144 Score: 181
Period size: 56 Copynumber: 2.9 Consensus size: 56
21601971 TCATGGCTTC
* * * * ** * *
21601981 GATATATGTGTGCGATTAATACCATGTTTTATACGTTGGCATCGATATGTGACTCC
1 GATAAATGTGTGCGAGTAAGACCACGTTGGATATGTTGGCATCGATATGTGACTCA
**
21602037 GATAAATGTGTGCGAGTAAGACCACGTTTTATATGTTGGCATCGATATGTGACTCA
1 GATAAATGTGTGCGAGTAAGACCACGTTGGATATGTTGGCATCGATATGTGACTCA
*
21602093 GATATATGTGTGCGAGTAAGACC-CTGTCTGGGATA-G-TGGCATCGATATGTGA
1 GATAAATGTGTGCGAGTAAGACCAC-GT-T-GGATATGTTGGCATCGATATGTGA
21602145 TTACATGTAA
Statistics
Matches: 96, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
55 1 0.01
56 90 0.94
57 2 0.02
58 3 0.03
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (56 bp):
GATAAATGTGTGCGAGTAAGACCACGTTGGATATGTTGGCATCGATATGTGACTCA
Found at i:21607170 original size:25 final size:25
Alignment explanation
Indices: 21607141--21607193 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
21607131 CCAAATTTTC
21607141 TTACTTT-CATTTGCATTTCATTACT
1 TTACTTTCCA-TTGCATTTCATTACT
* *
21607166 TTACTTTCCATTGCATTTCCTTTCT
1 TTACTTTCCATTGCATTTCATTACT
21607191 TTA
1 TTA
21607194 ACTTAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 23 0.92
26 2 0.08
ACGTcount: A:0.17, C:0.23, G:0.04, T:0.57
Consensus pattern (25 bp):
TTACTTTCCATTGCATTTCATTACT
Found at i:21607177 original size:20 final size:20
Alignment explanation
Indices: 21607137--21607182 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
21607127 CTTTCCAAAT
*
21607137 TTTC-TTACTTTCATTTGCA
1 TTTCATTACTTTCATTTCCA
21607156 TTTCATTACTTT-ACTTTCCA
1 TTTCATTACTTTCA-TTTCCA
*
21607176 TTGCATT
1 TTTCATT
21607183 TCCTTTCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.17, C:0.22, G:0.04, T:0.57
Consensus pattern (20 bp):
TTTCATTACTTTCATTTCCA
Found at i:21616130 original size:46 final size:46
Alignment explanation
Indices: 21616053--21616176 Score: 146
Period size: 46 Copynumber: 2.7 Consensus size: 46
21616043 GAGACGAGCG
* *
21616053 CTAGTGTAAGACATGTCTGGGACAGGTATCGGGCT-CGAGATGTAAC
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGGCTACGAGATGT-AC
* **
21616099 CTAGTGTAAGACATGTCTGGGACATGCATC-GGCTATGAGATGTGT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGGCTACGAGATGTAC
*
21616144 C-AGTTTAAGATCATGTCTGGGACATGGCATCGG
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
21616177 CACGTATAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
44 8 0.12
45 19 0.28
46 40 0.59
47 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (46 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGGCTACGAGATGTAC
Found at i:21616212 original size:48 final size:45
Alignment explanation
Indices: 21616100--21616222 Score: 142
Period size: 48 Copynumber: 2.7 Consensus size: 45
21616090 AGATGTAACC
* *
21616100 TAGTGTAAGACATGTCTGGGACAT-GCATCGGCTATGAGATGTGT
1 TAGTGTAAGACATGTCTGGGACATGGCATCGGCTATGAAAGGTGT
* *
21616144 CAGTTTAAGATCATGTCTGGGACATGGCATCGGCACGTAT-AAAGGTGT
1 TAGTGTAAGA-CATGTCTGGGACATGGCATCGG--C-TATGAAAGGTGT
*
21616192 TAGTGTAAGACCATGTCTGGGACATGACATC
1 TAGTGTAAGA-CATGTCTGGGACATGGCATC
21616223 AGTATAGATA
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
44 8 0.12
45 14 0.21
46 7 0.11
48 34 0.52
49 3 0.05
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (45 bp):
TAGTGTAAGACATGTCTGGGACATGGCATCGGCTATGAAAGGTGT
Found at i:21616409 original size:46 final size:43
Alignment explanation
Indices: 21616324--21616446 Score: 129
Period size: 46 Copynumber: 2.7 Consensus size: 43
21616314 TTGGCATGCT
*
21616324 AGTGTAAGACATGTCTGGGACATGTATCGGGCTCGAGATGTAACCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCTCGAGATGT--CCC
** ***
21616370 AGTGTAAGACATGTCTGGGACATGCATCGGCTATTAGATGTGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGATGTCCC
*
21616414 AGTTTAAGATCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
21616447 ACGTATAAAG
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
44 8 0.12
45 18 0.27
46 41 0.61
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (43 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGATGTCCC
Found at i:21616476 original size:48 final size:47
Alignment explanation
Indices: 21616370--21616538 Score: 175
Period size: 48 Copynumber: 3.6 Consensus size: 47
21616360 GATGTAACCC
*
21616370 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-C-TATTAGATGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGACGTA-TAGAGGTGTT
* * *
21616414 AGTTTAAGATCATGTCTGGGACATGGCATCGGCACGTATAAAGGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-ACGTATAGAGGTGTT
* * * * * *
21616462 AGTGTAAGACCATGTCTGGGACATGACATCAGTACGGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGACGTATA-GAG-GTGTT
21616512 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACCATGTCTGGGACATGGC
21616539 GTCAGCCTCG
Statistics
Matches: 104, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
44 8 0.08
45 14 0.13
46 7 0.07
48 42 0.40
49 4 0.04
50 29 0.28
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGACGTATAGAGGTGTT
Found at i:21616531 original size:269 final size:269
Alignment explanation
Indices: 21616052--21616617 Score: 1042
Period size: 269 Copynumber: 2.1 Consensus size: 269
21616042 TGAGACGAGC
* *
21616052 GCTAGTGTAAGACATGTCTGGGACAGGTATCGGGCTCGAGATGTAACCTAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGTATCGGGCTCGAGATGTAACCCAGTGTAAGACATGTCT
21616117 GGGACATGCATCGGCTATGAGATGTGTCAGTTTAAGATCATGTCTGGGACATGGCATCGGCACGT
66 GGGACATGCATCGGCTATGAGATGTGTCAGTTTAAGATCATGTCTGGGACATGGCATCGGCACGT
*
21616182 ATAAAGGTGTTAGTGTAAGACCATGTCTGGGACATGACATCAGTATAGATATGTGAGAGCTAGTG
131 ATAAAGGTGTTAGTGTAAGACCATGTCTGGGACATGACATCAGTACAGATATGTGAGAGCTAGTG
*
21616247 TAAGACCATGTCTGGGACATGGCGTTAGCCTCGATTTCGATAGTCAGTGTAAGACCATGTCTGGG
196 TAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTCGATAGTCAGTGTAAGACCATGTCTGGG
21616312 ACTTGGCAT
261 ACTTGGCAT
21616321 GCTAGTGTAAGACATGTCTGGGACATGTATCGGGCTCGAGATGTAACCCAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGTATCGGGCTCGAGATGTAACCCAGTGTAAGACATGTCT
* *
21616386 GGGACATGCATCGGCTATTAGATGTGTTAGTTTAAGATCATGTCTGGGACATGGCATCGGCACGT
66 GGGACATGCATCGGCTATGAGATGTGTCAGTTTAAGATCATGTCTGGGACATGGCATCGGCACGT
*
21616451 ATAAAGGTGTTAGTGTAAGACCATGTCTGGGACATGACATCAGTACGGATATGTGAGAGCTAGTG
131 ATAAAGGTGTTAGTGTAAGACCATGTCTGGGACATGACATCAGTACAGATATGTGAGAGCTAGTG
21616516 TAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTCGATAGTCAGTGTAAGACCATGTCTGGG
196 TAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTCGATAGTCAGTGTAAGACCATGTCTGGG
21616581 ACTTGGCAT
261 ACTTGGCAT
* *
21616590 GCTAGTGTAAGACCATGTTTAGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
21616618 GCATCGGCAT
Statistics
Matches: 287, Mismatches: 9, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
269 274 0.95
270 13 0.05
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (269 bp):
GCTAGTGTAAGACATGTCTGGGACATGTATCGGGCTCGAGATGTAACCCAGTGTAAGACATGTCT
GGGACATGCATCGGCTATGAGATGTGTCAGTTTAAGATCATGTCTGGGACATGGCATCGGCACGT
ATAAAGGTGTTAGTGTAAGACCATGTCTGGGACATGACATCAGTACAGATATGTGAGAGCTAGTG
TAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTCGATAGTCAGTGTAAGACCATGTCTGGG
ACTTGGCAT
Found at i:21616602 original size:32 final size:32
Alignment explanation
Indices: 21616561--21616621 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
21616551 TTCGATAGTC
* *
21616561 AGTGTAAGACCATGTCTGGGACTTGGCATGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATGCT
*
21616593 AGTGTAAGACCATGTTTAGGACATGGCAT
1 AGTGTAAGACCATGTCTAGGACATGGCAT
21616622 CGGCATCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (32 bp):
AGTGTAAGACCATGTCTAGGACATGGCATGCT
Found at i:21627304 original size:40 final size:40
Alignment explanation
Indices: 21627242--21627500 Score: 339
Period size: 40 Copynumber: 6.5 Consensus size: 40
21627232 AAGCCAAGTA
* * * *
21627242 CCTTCGGGATTTA-ACCGGATATAGCTA-CTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAGCTCGCACAAATG
* * *
21627281 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
* *
21627321 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGTACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
21627361 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
*
21627401 CCTTTGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
*
21627441 CCTTCGGGACTTAGCCCGGA-ACTAGTTA-CTAGTGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAG-TAGCT--CGCACAAATG
21627482 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
21627501 TTATCATCCA
Statistics
Matches: 199, Mismatches: 15, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
39 14 0.07
40 156 0.78
41 26 0.13
42 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
Found at i:21635730 original size:20 final size:20
Alignment explanation
Indices: 21635705--21635751 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
21635695 ATACTTGATT
21635705 TCATTTCATCAATTCATATA
1 TCATTTCATCAATTCATATA
* *
21635725 TCATTTCATCATTTCATATT
1 TCATTTCATCAATTCATATA
21635745 TCATTTC
1 TCATTTC
21635752 TCATCTCATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.00, T:0.51
Consensus pattern (20 bp):
TCATTTCATCAATTCATATA
Found at i:21635770 original size:18 final size:18
Alignment explanation
Indices: 21635704--21635775 Score: 74
Period size: 20 Copynumber: 3.8 Consensus size: 18
21635694 AATACTTGAT
21635704 TTCATTTCATCAAT-TCATA
1 TTCATTTC-TC-ATCTCATA
*
21635723 TATCATTTCATCATTTCATA
1 T-TCATTTC-TCATCTCATA
21635743 TTTCATTTCTCATCTCATA
1 -TTCATTTCTCATCTCATA
*
21635762 TTCAATTCTCATCT
1 TTCATTTCTCATCT
21635776 TTGTCATCTC
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
18 13 0.27
19 12 0.25
20 22 0.46
21 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.00, T:0.50
Consensus pattern (18 bp):
TTCATTTCTCATCTCATA
Found at i:21637821 original size:21 final size:20
Alignment explanation
Indices: 21637784--21637823 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
21637774 CCCTTGATAC
* *
21637784 AGGGCACACTCCTGTGTGGA
1 AGGGCACACGCCCGTGTGGA
21637804 AGGGCAACACGCCCGTGTGG
1 AGGGC-ACACGCCCGTGTGG
21637824 TCATTATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.20, C:0.28, G:0.38, T:0.15
Consensus pattern (20 bp):
AGGGCACACGCCCGTGTGGA
Found at i:21639105 original size:48 final size:46
Alignment explanation
Indices: 21639053--21639167 Score: 142
Period size: 46 Copynumber: 2.5 Consensus size: 46
21639043 GAGGCCAATG
* *
21639053 CATGTCCCAGACATGACTTACATTGGCT-TAAATATCTTGGGGCTGATA
1 CATGTCCCAGACATGTCTTACACTGGCTCT-AATA-C-TGGGGCTGATA
* * * *
21639101 CATGTCCCAGACATGTCTTACACTGGCTCTCATACTGTGGTTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTAATACTGGGGCTGATA
21639147 CATGTCCCAGACATGTCTTAC
1 CATGTCCCAGACATGTCTTAC
21639168 GCTAGCACAC
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
46 29 0.48
47 1 0.02
48 29 0.48
49 1 0.02
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.31
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTAATACTGGGGCTGATA
Found at i:21639163 original size:46 final size:48
Alignment explanation
Indices: 21639050--21639167 Score: 152
Period size: 48 Copynumber: 2.5 Consensus size: 48
21639040 CGCGAGGCCA
* *
21639050 ATGCATGTCCCAGACATGACTTACATTGGCTTAAATATCTTGGGGCTG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTTAAATATCTTGGGGCTG
* * * *
21639098 ATACATGTCCCAGACATGTCTTACACTGGCTCT-CATA-C-TGTGGTTG
1 ATGCATGTCCCAGACATGTCTTACACTGGCT-TAAATATCTTGGGGCTG
21639144 ATGCATGTCCCAGACATGTCTTAC
1 ATGCATGTCCCAGACATGTCTTAC
21639168 GCTAGCACAC
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 29 0.47
47 1 0.02
48 31 0.50
49 1 0.02
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (48 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTTAAATATCTTGGGGCTG
Found at i:21640742 original size:101 final size:100
Alignment explanation
Indices: 21640561--21640792 Score: 286
Period size: 101 Copynumber: 2.3 Consensus size: 100
21640551 ATTGTGAGAA
* * ** *
21640561 CACATGTGTAGTACTATGTACAGGCTACTGTGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGG-TTTAGGTCACGTGTGTAGTA
* *
21640626 CTAAGTGTAGGCTACTATGCGTACCCGACAACTTCAAT
65 CTAAGTGTAGGCTACTACGCGTACCAGACAA-TT-AAT
* * *
21640664 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG-TTAGGTCACGTGTTTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGGTTTAGGTCACGTGTGTAGTAC
* * ** **
21640728 TATGTGTAGGCTACTACGTGTACCAGATTATTGGT
66 TAAGTGTAGGCTACTACGCGTACCAGACAATTAAT
21640763 CACATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
21640793 TGCGTACCAG
Statistics
Matches: 112, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
99 30 0.27
100 2 0.02
101 43 0.38
103 37 0.33
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (100 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGGTTTAGGTCACGTGTGTAGTAC
TAAGTGTAGGCTACTACGCGTACCAGACAATTAAT
Found at i:21641025 original size:16 final size:15
Alignment explanation
Indices: 21641004--21641033 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
21640994 GAATGGAGTA
21641004 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
21641020 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
21641034 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:21643127 original size:46 final size:46
Alignment explanation
Indices: 21643077--21643249 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
21643067 TGGTTGAGCA
21643077 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
21643123 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
21643168 CATCCGAACTCGTTGGGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
21643216 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
21643250 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:21643233 original size:93 final size:93
Alignment explanation
Indices: 21643074--21643244 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
21643064 GGATGGTTGA
* *
21643074 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
21643139 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
21643167 GCATCCGAACTCGTTGGGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
21643232 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
21643245 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:21652422 original size:352 final size:352
Alignment explanation
Indices: 21651693--21653192 Score: 1945
Period size: 352 Copynumber: 4.3 Consensus size: 352
21651683 ATTGGAACGA
* *
21651693 TATTTGCAAGGCCTACAACAAATGTGCACTTCTTAATCTTCTCATCAGGATACTCTACAAAGAAT
1 TATTTGCAAGGCCTACGACAAATGTGCACTTCTTAATCTTCTCATCAGGATACTCTACAAAGAGT
* * * * * *
21651758 TGTAGTATTATTTGA-CATTACACAATGACATATCTCTCAATAGCTGTT-AAGTTAGTATATATA
66 TGTAGTATTATCTGACCA-TGCACAA-CACATATCTCTCAACAGCTGTTGGA-TTAGTAGATATA
* * * * * *
21651821 AAAGCATAATCATCTTGGTTCAATTCCCGATCTATATAATAATTCAGTTTGATTTATCAATTTCA
128 AAAACATGATCATCTTGGTTCAATTCCCAATCTATATAACAATTCAGTTCGATTTATCAATTCCA
* *
21651886 AATATCTTATAACAATCTATTATATA-TATGTATCAATTCAATTTCATTATTCGTATG-CCCTTA
193 AACATCTTATAAAAATCTATTATA-AGTATGTATCAATTCAATTTCATTATTCGTATGCCCCTTA
* *
21651949 AAGTTTCACATTTTATTCAATTTAGTCCCTAAAATCGAAATAGCCATAACTAGTCCTTTTTAACT
257 AAGTTTCACATTTTATTCAATTTAGTCTCTAAAATCGAAATAGTCATAACTAGTCCTTTTTAACT
* *
21652014 AACCATTTTGTATGGTGTTTCTCCTCCATTT
322 AACCATTTTGCATGGTGTCTCTCCTCCATTT
* * * * * *
21652045 TATCTGCATGGCCTACGAAAAATGTGCAGTTCTTAATTTTCTCATCAGGATAGTCTACAAAGAGT
1 TATTTGCAAGGCCTACGACAAATGTGCACTTCTTAATCTTCTCATCAGGATACTCTACAAAGAGT
* *
21652110 TGTAGTATTATTTGACCATGCACAACA-ATGCATCTCTCAACAGCTATTGGATTAGTAGATATAA
66 TGTAGTATTATCTGACCATGCACAACACAT--ATCTCTCAACAGCTGTTGGATTAGTAGATATAA
* * * *
21652174 AAACATGATAATCTTGGTTAAATTCCCAATCTATATAACAATTCAGTTCGATTTATTAATTACAA
129 AAACATGATCATCTTGGTTCAATTCCCAATCTATATAACAATTCAGTTCGATTTATCAATTCCAA
* * * * *
21652239 ACATTTTAGAAAAATCTATTATAAGTATGTATTAGTTCGATTTCATTATTCGTATGCCCCTTAAA
194 ACATCTTATAAAAATCTATTATAAGTATGTATCAATTCAATTTCATTATTCGTATGCCCCTTAAA
* * *
21652304 GTTTTACATTTTATTCAATTTAATAC-CTAAAATCGAAATAGTCATAACGAGTCCTTTTTAACTA
259 GTTTCACATTTTATTCAATTTAGT-CTCTAAAATCGAAATAGTCATAACTAGTCCTTTTTAACTA
*
21652368 ATCATTTTGCATGGTGTCTCTCCTCCA-TT
323 ACCATTTTGCATGGTGTCTCTCCTCCATTT
* * * * * *
21652397 TATTTGCAAAGCCTACTACAAATGTGTAGTTCTTAATCTTCTCATAAGGATACTCTGCAAAGAGT
1 TATTTGCAAGGCCTACGACAAATGTGCACTTCTTAATCTTCTCATCAGGATACTCTACAAAGAGT
* * * *
21652462 TGTAATATTATCTGACCATGCACAATGACATATCTCTCAACAACTGCTGGATTAGTAGATATAAA
66 TGTAGTATTATCTGACCATGCACAA-CACATATCTCTCAACAGCTGTTGGATTAGTAGATATAAA
** ** * * **
21652527 AGTATGATCATCTTGGTTCAATTCGTAATTTGTATAACAATTCAGTTTAATTTATCAATTCCAAA
130 AACATGATCATCTTGGTTCAATTCCCAATCTATATAACAATTCAGTTCGATTTATCAATTCCAAA
* * * * *
21652592 CATCTTATAATAATCCATTATATGTATGTATGAATTCAATTTTATTATTCGTATGCCCCTTAAAG
195 CATCTTATAAAAATCTATTATAAGTATGTATCAATTCAATTTCATTATTCGTATGCCCCTTAAAG
* * *
21652657 TTTCACATTTTATTCAATTTAGTCTCTAAAATCAAAATAGTCATAACTAGTCATTTTTAACTAAT
260 TTTCACATTTTATTCAATTTAGTCTCTAAAATCGAAATAGTCATAACTAGTCCTTTTTAACTAAC
* *
21652722 CATTTTGCATGGTATTTCTCCTCCATTT
325 CATTTTGCATGGTGTCTCTCCTCCATTT
* * *
21652750 TATTTGCAAAGCCTACGACAAATGTGCACTTCTTAATCTTTTCATCAGGATACTCTACAAAAAGT
1 TATTTGCAAGGCCTACGACAAATGTGCACTTCTTAATCTTCTCATCAGGATACTCTACAAAGAGT
* * * * * **
21652815 TGTAGTATTATATAACAATGCACAAGGACATATCTCTCGACAATTG-TGGATTAGTAGATATAAA
66 TGTAGTATTATCTGACCATGCACAA-CACATATCTCTCAACAGCTGTTGGATTAGTAGATATAAA
* ** * * * *
21652879 AACATGATCATCTGGGTTCAATTCCTGATATATATAACAATTTAATTCTATTTATCAATTCCAAA
130 AACATGATCATCTTGGTTCAATTCCCAATCTATATAACAATTCAGTTCGATTTATCAATTCCAAA
* * * *
21652944 TATCTTATAAAAATCTATTATATGTATGTATCAATTCAATTTCATTATTCGTTTTCCCCTTAAAG
195 CATCTTATAAAAATCTATTATAAGTATGTATCAATTCAATTTCATTATTCGTATGCCCCTTAAAG
* * * * *
21653009 TTTTACATTTTATTCAATTTAGTCTTTAAAATTGAAATAGTCATAATTAGTCCTTTTTAAATAAC
260 TTTCACATTTTATTCAATTTAGTCTCTAAAATCGAAATAGTCATAACTAGTCCTTTTTAACTAAC
*
21653074 CATTTTGTATGGTGTCTCTCCTCCATTT
325 CATTTTGCATGGTGTCTCTCCTCCATTT
* * * * *
21653102 TATGTGCAAGGCCTACGAAAAATGTGCACTTCTTAATCTCCTCATCAGGATACTTTGCAAAGAGT
1 TATTTGCAAGGCCTACGACAAATGTGCACTTCTTAATCTTCTCATCAGGATACTCTACAAAGAGT
*
21653167 TGTAGTATTATCTGACCATGGACAAC
66 TGTAGTATTATCTGACCATGCACAAC
21653193 GAAAAATCTT
Statistics
Matches: 1000, Mismatches: 137, Indels: 23
0.86 0.12 0.02
Matches are distributed among these distances:
350 2 0.00
351 3 0.00
352 799 0.80
353 193 0.19
354 3 0.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (352 bp):
TATTTGCAAGGCCTACGACAAATGTGCACTTCTTAATCTTCTCATCAGGATACTCTACAAAGAGT
TGTAGTATTATCTGACCATGCACAACACATATCTCTCAACAGCTGTTGGATTAGTAGATATAAAA
ACATGATCATCTTGGTTCAATTCCCAATCTATATAACAATTCAGTTCGATTTATCAATTCCAAAC
ATCTTATAAAAATCTATTATAAGTATGTATCAATTCAATTTCATTATTCGTATGCCCCTTAAAGT
TTCACATTTTATTCAATTTAGTCTCTAAAATCGAAATAGTCATAACTAGTCCTTTTTAACTAACC
ATTTTGCATGGTGTCTCTCCTCCATTT
Found at i:21662090 original size:22 final size:22
Alignment explanation
Indices: 21662065--21662107 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
21662055 TGTTGTTGTT
* *
21662065 TTGTTGTAATTTTATTATTATA
1 TTGTTATAATATTATTATTATA
*
21662087 TTGTTATTATATTATTATTAT
1 TTGTTATAATATTATTATTAT
21662108 TTTTTTGATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (22 bp):
TTGTTATAATATTATTATTATA
Found at i:21662093 original size:11 final size:11
Alignment explanation
Indices: 21662076--21662107 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
21662066 TGTTGTAATT
21662076 TTATTATTATA
1 TTATTATTATA
*
21662087 TTGTTATTATA
1 TTATTATTATA
21662098 TTATTATTAT
1 TTATTATTAT
21662108 TTTTTTGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (11 bp):
TTATTATTATA
Found at i:21662119 original size:25 final size:25
Alignment explanation
Indices: 21662076--21662138 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 25
21662066 TGTTGTAATT
* * *
21662076 TTATTATTATATTGTTATTATATTA
1 TTATTATTTTATTGATATTATATAA
*
21662101 TTATTATTTTTTTGATATTATATAA
1 TTATTATTTTATTGATATTATATAA
21662126 TT-TTATTTTATTG
1 TTATTATTTTATTG
21662139 TTAATTTTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
24 10 0.30
25 23 0.70
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (25 bp):
TTATTATTTTATTGATATTATATAA
Found at i:21662133 original size:5 final size:5
Alignment explanation
Indices: 21662073--21662159 Score: 50
Period size: 5 Copynumber: 16.4 Consensus size: 5
21662063 TTTTGTTGTA
* * * * *
21662073 ATTTT ATTATT ATATT GTTATT ATATT ATTATT ATTTT -TTTG ATATT
1 ATTTT ATT-TT ATTTT ATT-TT ATTTT ATT-TT ATTTT ATTTT ATTTT
* *
21662120 ATATA ATTTT ATTTT ATTGTT AATTTT ATTTTT ATTTT AT
1 ATTTT ATTTT ATTTT ATT-TT -ATTTT A-TTTT ATTTT AT
21662160 AAATATTTTT
Statistics
Matches: 63, Mismatches: 12, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
4 3 0.05
5 36 0.57
6 21 0.33
7 3 0.05
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (5 bp):
ATTTT
Found at i:21667112 original size:46 final size:44
Alignment explanation
Indices: 21667012--21667119 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
21667002 TGTCTTTGAC
** * * *
21667012 ATGGACTTACATGAATTATTCCTATCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATATATAAT
* *
21667056 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATA--TATAAT
21667102 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
21667120 TTTCTGTTCT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 32 0.58
46 23 0.42
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATATATAAT
Found at i:21668659 original size:28 final size:28
Alignment explanation
Indices: 21668619--21668674 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
21668609 CATAAGAAAT
21668619 ACATTATGAATCTTCTCTAACTCAATCG
1 ACATTATGAATCTTCTCTAACTCAATCG
21668647 ACATTATGAATCTTCTCTAACTCAATCG
1 ACATTATGAATCTTCTCTAACTCAATCG
21668675 GTAAAGCTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (28 bp):
ACATTATGAATCTTCTCTAACTCAATCG
Found at i:21673646 original size:39 final size:38
Alignment explanation
Indices: 21673561--21673746 Score: 205
Period size: 39 Copynumber: 4.7 Consensus size: 38
21673551 ACTACTTGCT
*
21673561 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAG-CCCGGTTA-A-TAACTCGCA
21673601 CAAATGCCTTCGGGACTTAGCCCGGTTCAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-AATAACTCGCA
*
21673640 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-T-TAATAACTCGCA
* * * * * *
21673680 CAATTTCCTTCGGG-TTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG--TTAATAACTCGCA
*
21673719 CAAATGCCTTTGGGACTTAGCCCGGTTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA
21673747 TCATTCGAAT
Statistics
Matches: 127, Mismatches: 13, Indels: 14
0.82 0.08 0.09
Matches are distributed among these distances:
38 3 0.02
39 61 0.48
40 60 0.47
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (38 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTAATAACTCGCA
Found at i:21673664 original size:79 final size:78
Alignment explanation
Indices: 21673561--21673747 Score: 225
Period size: 79 Copynumber: 2.4 Consensus size: 78
21673551 ACTACTTGCT
*
21673561 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAATAACTCACACAAATGCCTTCGGG-CTTAGCCCG
*
21673625 G-TTCAATAACTCGCA
64 GATT-AATAACTAGCA
* * * * * *
21673640 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTTCCTTCGGGTTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCACACAAATGCCTTCGGGCTTAGCCCGG-
* *
21673705 ATTAGTCACTAGCA
65 ATTAATAACTAGCA
*
21673719 CAAATGCCTTTGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
21673748 CATTCGAATA
Statistics
Matches: 92, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 9 0.10
79 80 0.87
80 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCACACAAATGCCTTCGGGCTTAGCCCGGA
TTAATAACTAGCA
Found at i:21681510 original size:40 final size:39
Alignment explanation
Indices: 21681465--21681672 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
21681455 CGGAATACAA
*
21681465 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
21681505 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
21681545 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
21681585 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
21681625 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
21681665 CCGGATAT
1 CCGGATAT
21681673 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:21681605 original size:80 final size:80
Alignment explanation
Indices: 21681465--21681671 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
21681455 CGGAATACAA
* * *
21681465 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
21681529 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
21681545 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
21681609 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
21681625 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
21681672 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:21689500 original size:40 final size:39
Alignment explanation
Indices: 21689456--21689585 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
21689446 TCGAATACAA
21689456 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
21689496 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
21689536 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
21689576 CCGGATATAA
1 CCGGATATAA
21689586 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:21689600 original size:40 final size:40
Alignment explanation
Indices: 21689472--21689622 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
21689462 ATAACCATGT
* * *
21689472 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
21689512 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
21689552 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
21689592 GCATAATTGTCTTCGGG-ATTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
21689623 CATTCAATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 14 0.16
40 74 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:21689606 original size:80 final size:79
Alignment explanation
Indices: 21689472--21689620 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
21689462 ATAACCATGT
* *
21689472 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-ATTAGCC
21689537 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
21689552 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTAGC
21689615 CCGGAT
64 CCGGAT
21689621 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.23
80 46 0.77
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTAGCCC
GGATGTAGCCACTA
Found at i:21697637 original size:28 final size:28
Alignment explanation
Indices: 21697605--21697673 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
21697595 GCGTAGATCA
21697605 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
21697633 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
21697661 CGATA-TACCCCTA
1 CGAAATTACCCCTA
21697674 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:21703973 original size:20 final size:20
Alignment explanation
Indices: 21703948--21703985 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
21703938 GTTTATTCGC
*
21703948 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
21703968 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
21703986 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:21707933 original size:47 final size:47
Alignment explanation
Indices: 21707768--21708247 Score: 817
Period size: 47 Copynumber: 10.3 Consensus size: 47
21707758 GTATGAGATA
* *
21707768 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
21707815 TATATAAGTGA-AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
21707861 TAT-TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
21707907 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
21707954 TATACATGTGA-AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
21708000 TATATATGTGAGAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
21708047 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--G
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
21708092 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
21708139 CATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
21708186 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
21708233 TATAAATGTGATAAG
1 TATATATGTGATAAG
21708248 TCCCGAAGGG
Statistics
Matches: 414, Mismatches: 14, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
45 51 0.12
46 119 0.29
47 244 0.59
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:21708119 original size:139 final size:139
Alignment explanation
Indices: 21707768--21708243 Score: 794
Period size: 139 Copynumber: 3.4 Consensus size: 139
21707758 GTATGAGATA
*
21707768 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAAGTGAAAGGCCT
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG-GTATATATGTGAAAGGCCT
21707833 AATGGCCGATGTGATGAATGTGAAAGTGTAT-TATGTGATAAGGCCTAATGGCCGATGTGATGAA
65 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
21707897 TGTGAAAGTG
130 TGTGAAAGTG
* * *
21707907 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATGTGAAAGGCCT
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG-GTATATATGTGAAAGGCCT
*
21707972 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAGAAGGCCTAATGGCCGATGTGATGAA
65 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
21708037 TGTGAAAGTG
130 TGTGAAAGTG
* *
21708047 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-GTATATATGTGATAAGGCCT
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGGTATATATGTGA-AAGGCCT
* *
21708111 AATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCGAATGGCCGATGTGATGAA
65 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
21708176 TGTGAAAGTG
130 TGTGAAAGTG
* * *
21708186 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG-GTATATATGTGA
21708244 TAAGTCCCGA
Statistics
Matches: 319, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
138 11 0.03
139 211 0.66
140 86 0.27
141 11 0.03
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (139 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGGTATATATGTGAAAGGCCTA
ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
GTGAAAGTG
Found at i:21708174 original size:232 final size:233
Alignment explanation
Indices: 21707768--21708243 Score: 812
Period size: 232 Copynumber: 2.0 Consensus size: 233
21707758 GTATGAGATA
*
21707768 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAAGTGAAAGGCCT
1 TATATATGTGAGAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAAGTGAAAGGCCT
*
21707833 AATGGCCGATGTGATGAATGTGAAAGTGTATTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66 AATGGCCGATGTGATGAATGTGAAAGTATATTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
21707898 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATGT
131 GTGAAAGTGCATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATACATGT
* *
21707963 GA-AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
196 GATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
21708000 TATATATGTGAGAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGAGAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAAGTGA-AAGGCC
21708065 TAATGGCCGATGTGATGAATGTGAAAGTATA-TATGTGATAAGGCCTAATGGCCGATGTGATGAA
65 TAATGGCCGATGTGATGAATGTGAAAGTATATTATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
21708129 TGTGAAAGTGCATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
130 TGTGAAAGTGCATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATACATG
* *
21708194 TGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
195 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
21708233 TATAAATGTGA
1 TATATATGTGA
21708244 TAAGTCCCGA
Statistics
Matches: 229, Mismatches: 13, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
232 152 0.66
233 77 0.34
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (233 bp):
TATATATGTGAGAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAAGTGAAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTATATTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
GTGAAAGTGCATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATACATGT
GATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:21708424 original size:37 final size:37
Alignment explanation
Indices: 21708365--21708447 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
21708355 CCGAGCTCTA
* *
21708365 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
21708402 AAGACCCGATGACCACGGGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
21708439 AAGCCCCGA
1 AAGACCCGA
21708448 ACTAAAGGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.33, T:0.20
Consensus pattern (37 bp):
AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
Found at i:21709954 original size:28 final size:28
Alignment explanation
Indices: 21709914--21709972 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
21709904 GCGTAGATCA
21709914 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
21709942 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
21709970 CGA
1 CGA
21709973 TATACCCTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:21712906 original size:40 final size:40
Alignment explanation
Indices: 21712861--21713028 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
21712851 CGGAATATAA
21712861 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
21712901 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
21712941 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
21712981 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
21713021 CCGGATAT
1 CCGGATAT
21713029 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:21716563 original size:48 final size:48
Alignment explanation
Indices: 21716492--21716754 Score: 341
Period size: 48 Copynumber: 5.5 Consensus size: 48
21716482 AGTACCAATA
* * * *
21716492 CCATGTCCCAGGCATGGTCTTACA-T-GAATCCACATATCATTGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCA--CATATATCAATGCCGATG
21716540 CCATGTCCCAGACATGGTCTTACACTGGCACATATATCAATGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCACATATATCAATGCCGATG
* * **
21716588 TCATGTCCCAGACATGGTCTTACATTGGCACATATATCAACACCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCACATATATCAATGCCGATG
** **
21716636 CCATGTCCCAGACATGGTCTTACTTTGGCACATATATCAACACCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCACATATATCAATGCCGATG
* * *
21716684 CCATGTCCCAAACATGGTCCTACACTGGCACATGTATCAATGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCACATATATCAATGCCGATG
* *
21716732 CCATGTCCCAAACATGGTTTTAC
1 CCATGTCCCAGACATGGTCTTAC
21716755 TGGAATCTCA
Statistics
Matches: 194, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
48 191 0.98
49 1 0.01
50 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.26
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTGGCACATATATCAATGCCGATG
Found at i:21754544 original size:59 final size:58
Alignment explanation
Indices: 21754472--21754632 Score: 180
Period size: 58 Copynumber: 2.8 Consensus size: 58
21754462 ATTTAAGCCC
* * * * *
21754472 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATA-TATTTCCAGCAT
* * **
21754531 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
* * **
21754589 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCA
21754633 ATCTCGTCAC
Statistics
Matches: 92, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
58 55 0.60
59 36 0.39
60 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:21754561 original size:29 final size:29
Alignment explanation
Indices: 21754521--21754632 Score: 224
Period size: 29 Copynumber: 3.9 Consensus size: 29
21754511 TGCCGTATTT
21754521 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
21754550 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
21754579 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
21754608 TTTCCAGCATGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
21754633 ATCTCGTCAC
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 83 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:21754564 original size:88 final size:87
Alignment explanation
Indices: 21754472--21754632 Score: 216
Period size: 88 Copynumber: 1.8 Consensus size: 87
21754462 ATTTAAGCCC
* * * *
21754472 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTTCCAGCATGCACA
1 GCACACATAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATA-TATTTCCAGCATGCACA
21754536 CTTAGTGCCATATATTTCCAGCAT
64 CTTAGTGCCATATATTTCCAGCAT
* * * **
21754560 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACT
1 GCACACATAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCATGCACACT
21754625 TAGTGCCA
66 TAGTGCCA
21754633 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
87 26 0.41
88 36 0.57
89 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (87 bp):
GCACACATAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCATGCACACT
TAGTGCCATATATTTCCAGCAT
Found at i:21755825 original size:19 final size:18
Alignment explanation
Indices: 21755789--21755846 Score: 57
Period size: 20 Copynumber: 3.2 Consensus size: 18
21755779 AGAATGAACA
*
21755789 CTTT-TTTTT-TTCTTTT
1 CTTTGTTTTTCTTCATTT
21755805 CTTTGTTTTTCTTCATATT
1 CTTTGTTTTTCTTCAT-TT
* *
21755824 CTCTTTTTTTTTTTCATTT
1 CT-TTGTTTTTCTTCATTT
21755843 CTTT
1 CTTT
21755847 ATTCTTCCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
16 4 0.11
17 5 0.14
18 6 0.17
19 8 0.23
20 12 0.34
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.78
Consensus pattern (18 bp):
CTTTGTTTTTCTTCATTT
Found at i:21762495 original size:59 final size:58
Alignment explanation
Indices: 21762422--21762553 Score: 158
Period size: 59 Copynumber: 2.3 Consensus size: 58
21762412 ATTTAAGCCC
* * * * *
21762422 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATA-TATTTCCAGCAT
* * **
21762481 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
21762539 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
21762554 ATATTGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
58 26 0.41
59 36 0.57
60 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:21762511 original size:29 final size:29
Alignment explanation
Indices: 21762471--21762558 Score: 169
Period size: 29 Copynumber: 3.1 Consensus size: 29
21762461 TGCCGTATTT
21762471 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
21762500 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
21762529 TTTCCAGCATGCACACTTAGTGCCA-ATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
21762557 TT
1 TT
21762559 GTCACCGTAC
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
28 5 0.08
29 54 0.92
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:21763468 original size:7 final size:7
Alignment explanation
Indices: 21763456--21763484 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
21763446 TCACCACCAC
21763456 AACATCA
1 AACATCA
21763463 AACATCA
1 AACATCA
21763470 AACATCA
1 AACATCA
21763477 AACATCA
1 AACATCA
21763484 A
1 A
21763485 TGATACCAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.59, C:0.28, G:0.00, T:0.14
Consensus pattern (7 bp):
AACATCA
Found at i:21763754 original size:21 final size:20
Alignment explanation
Indices: 21763715--21763771 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
21763705 AGAATGAACA
21763715 CTTT-TTTTT-TTC-TTT-T
1 CTTTGTTTTTCTTCATTTCT
21763731 CTTTGTTTTTCTTCATATTCT
1 CTTTGTTTTTCTTCAT-TTCT
* *
21763752 CTTTTTTTTTTTTCATTTCT
1 CTTTGTTTTTCTTCATTTCT
21763772 TTATTCTTCC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
16 4 0.12
17 5 0.15
18 3 0.09
19 1 0.03
20 6 0.18
21 15 0.44
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.77
Consensus pattern (20 bp):
CTTTGTTTTTCTTCATTTCT
Found at i:21807030 original size:61 final size:61
Alignment explanation
Indices: 21806964--21807163 Score: 224
Period size: 61 Copynumber: 3.3 Consensus size: 61
21806954 TACCTTTCTT
* * * * * * *
21806964 GAGTTTGGCCACAAAGCCATTCCTTAATATTCAGTACTCGCCAC-TGAGGCTTTCCTGTCCA
1 GAGTTTTGCCACAAAGGCATTCTTTAACATTCAATACTCGCCACAAG-GGCTTTCCTATCCA
* * * * * * *
21807025 AAGTTTTGCCACAAAGGCGTTCTTTAACATTTATTACTCACCACAAAGGGCTTTTCTATCTA
1 GAGTTTTGCCACAAAGGCATTCTTTAACATTCAATACTCGCCAC-AAGGGCTTTCCTATCCA
*
21807087 GAGTTTTGCCA-AAAGGCATTCTTTAACATTCAATACTCGCCACAATGGCTTTCCTATCCA
1 GAGTTTTGCCACAAAGGCATTCTTTAACATTCAATACTCGCCACAAGGGCTTTCCTATCCA
*
21807147 GATTTTTGCCACAAAGG
1 GAGTTTTGCCACAAAGG
21807164 TTGTCCCTCT
Statistics
Matches: 114, Mismatches: 22, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
60 24 0.21
61 68 0.60
62 21 0.18
63 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (61 bp):
GAGTTTTGCCACAAAGGCATTCTTTAACATTCAATACTCGCCACAAGGGCTTTCCTATCCA
Found at i:21808451 original size:41 final size:41
Alignment explanation
Indices: 21808398--21808480 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
21808388 ATGAATTCGA
21808398 CTTCTGAGATGGATCAATCAGCTTTCTTTGAGTAATTCCTT
1 CTTCTGAGATGGATCAATCAGCTTTCTTTGAGTAATTCCTT
*
21808439 CTTCTGATATGGATCAATCAGCTTTCTTTGAGTAATTCCTT
1 CTTCTGAGATGGATCAATCAGCTTTCTTTGAGTAATTCCTT
21808480 C
1 C
21808481 CTTCCTCCCT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.42
Consensus pattern (41 bp):
CTTCTGAGATGGATCAATCAGCTTTCTTTGAGTAATTCCTT
Found at i:21820109 original size:6 final size:6
Alignment explanation
Indices: 21820100--21820150 Score: 59
Period size: 6 Copynumber: 8.5 Consensus size: 6
21820090 AAGTTAAAGG
* * *
21820100 AAAACT AAAAAT AAAAAT AAAAAAT AGAAAT AAAAAT -AAAAT AAAACT
1 AAAAAT AAAAAT AAAAAT -AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
21820148 AAA
1 AAA
21820151 CATCATCATC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
5 5 0.13
6 28 0.72
7 6 0.15
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:21820122 original size:19 final size:19
Alignment explanation
Indices: 21820100--21820140 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
21820090 AAGTTAAAGG
*
21820100 AAAACTAAAAATAAAAATA
1 AAAAATAAAAATAAAAATA
*
21820119 AAAAATAGAAATAAAAATA
1 AAAAATAAAAATAAAAATA
21820138 AAA
1 AAA
21820141 TAAAACTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.15
Consensus pattern (19 bp):
AAAAATAAAAATAAAAATA
Found at i:21827931 original size:40 final size:40
Alignment explanation
Indices: 21827871--21828011 Score: 185
Period size: 40 Copynumber: 3.5 Consensus size: 40
21827861 CGATAATTTA
*
21827871 GCTATGTATGGCACTAAGTGTGCGATTCGAGATAGCTTCG
1 GCTATGTATGGCACTTAGTGTGCGATTCGAGATAGCTTCG
* *
21827911 GTTATGTAAGGCACTTAGTGTGCGATTCGAGATAGCTTCG
1 GCTATGTATGGCACTTAGTGTGCGATTCGAGATAGCTTCG
* * * *
21827951 GCTATGTATGGCACTTAGTGTGAAAGATT-AAAATAGCTTCA
1 GCTATGTATGGCACTTAGTGTG--CGATTCGAGATAGCTTCG
21827992 GCTATGTATTGGCACTTAGT
1 GCTATGTA-TGGCACTTAGT
21828012 ATGCAAGAAT
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
40 57 0.64
41 17 0.19
42 15 0.17
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.33
Consensus pattern (40 bp):
GCTATGTATGGCACTTAGTGTGCGATTCGAGATAGCTTCG
Found at i:21834326 original size:33 final size:33
Alignment explanation
Indices: 21834248--21834345 Score: 126
Period size: 34 Copynumber: 2.9 Consensus size: 33
21834238 GTTTTAGTTA
* *
21834248 GGGCCTTAGCCCATTTCAGTAACAGTAGCAGTCT
1 GGGCCTAAGCCCATTTCAGTAACAGTA-CAGTCG
*
21834282 GGGCCTGAGCCCATTTCAGTAACAGTATCAGT-G
1 GGGCCTAAGCCCATTTCAGTAACAGTA-CAGTCG
* *
21834315 GGGCCTAAGCCCATTACAGTACCAGTACAGT
1 GGGCCTAAGCCCATTTCAGTAACAGTACAGT
21834346 ATGCACTCAG
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
32 4 0.07
33 24 0.41
34 30 0.52
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (33 bp):
GGGCCTAAGCCCATTTCAGTAACAGTACAGTCG
Found at i:21835340 original size:22 final size:23
Alignment explanation
Indices: 21835292--21835340 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
21835282 CTTTGACCTT
* *
21835292 CATAAGAAACATTCAATCGACTG
1 CATAAGAAACATTCAAACGACGG
*
21835315 -ATAAGAAACATTCAAAC-CCGG
1 CATAAGAAACATTCAAACGACGG
21835336 CATAA
1 CATAA
21835341 CTCTCCTCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 2 0.09
22 20 0.91
ACGTcount: A:0.47, C:0.22, G:0.12, T:0.18
Consensus pattern (23 bp):
CATAAGAAACATTCAAACGACGG
Found at i:21837696 original size:34 final size:34
Alignment explanation
Indices: 21837653--21837718 Score: 107
Period size: 34 Copynumber: 1.9 Consensus size: 34
21837643 TAAGACAGAT
21837653 GCCTCAGTCAAT-ACTTTCTTGAGCTTCTCAAAAG
1 GCCTCAGTCAATAAC-TTCTTGAGCTTCTCAAAAG
*
21837687 GCCTCAGTCAGTAACTTCTTGAGCTTCTCAAA
1 GCCTCAGTCAATAACTTCTTGAGCTTCTCAAA
21837719 GCTCTCTTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 28 0.93
35 2 0.07
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (34 bp):
GCCTCAGTCAATAACTTCTTGAGCTTCTCAAAAG
Found at i:21842995 original size:29 final size:29
Alignment explanation
Indices: 21842953--21843036 Score: 141
Period size: 29 Copynumber: 2.9 Consensus size: 29
21842943 TGCCGTATTT
**
21842953 TTTCCAGCTTGCACACTTAGTGCCAAATA
1 TTTCCAGCACGCACACTTAGTGCCAAATA
*
21842982 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCAAATA
21843011 TTTCCAGCACGCACACTTAGTGCCAA
1 TTTCCAGCACGCACACTTAGTGCCAA
21843037 TCTCGACACC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.27
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCAAATA
Found at i:21853996 original size:54 final size:54
Alignment explanation
Indices: 21853914--21854017 Score: 208
Period size: 54 Copynumber: 1.9 Consensus size: 54
21853904 AAACTTACAG
21853914 AACTCATAGAGTATTGTCGGGATTACCAGTCCAGGCTAAATCCCCTGCAATATA
1 AACTCATAGAGTATTGTCGGGATTACCAGTCCAGGCTAAATCCCCTGCAATATA
21853968 AACTCATAGAGTATTGTCGGGATTACCAGTCCAGGCTAAATCCCCTGCAA
1 AACTCATAGAGTATTGTCGGGATTACCAGTCCAGGCTAAATCCCCTGCAA
21854018 CGACAATTAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (54 bp):
AACTCATAGAGTATTGTCGGGATTACCAGTCCAGGCTAAATCCCCTGCAATATA
Found at i:21868331 original size:42 final size:39
Alignment explanation
Indices: 21868276--21868370 Score: 127
Period size: 42 Copynumber: 2.4 Consensus size: 39
21868266 GACTATGTAC
*
21868276 GGCACTTAATGTGCAATTTGAGATAGCTTCGGTTATGTAAAA
1 GGCACTTAGTGTGCAATTTGAGATAGCTTCGGTTAT-T--AA
* * *
21868318 GGCACTTAGTGTGCGATTTGATATAGCTTCGGTTATTAT
1 GGCACTTAGTGTGCAATTTGAGATAGCTTCGGTTATTAA
21868357 GGCACTTAGTGTGC
1 GGCACTTAGTGTGC
21868371 GAGATTAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
39 15 0.31
41 1 0.02
42 33 0.67
ACGTcount: A:0.24, C:0.14, G:0.26, T:0.36
Consensus pattern (39 bp):
GGCACTTAGTGTGCAATTTGAGATAGCTTCGGTTATTAA
Found at i:21868411 original size:42 final size:40
Alignment explanation
Indices: 21868318--21868416 Score: 119
Period size: 42 Copynumber: 2.5 Consensus size: 40
21868308 TTATGTAAAA
* * * *
21868318 GGCACTTAGTGTGCGA-TTTGATATAGCTTCGGTTATTAT
1 GGCACTTAGTGTGCGAGATTAAAATAGCTTCGGCTATTAT
*
21868357 GGCACTTAGTGTGCGAGATTAAAATAGCTTCGGCTGTGTATT
1 GGCACTTAGTGTGCGAGATTAAAATAGCTTCGGCTAT-TA-T
*
21868399 GGCACTTAGTGTGTGAGA
1 GGCACTTAGTGTGCGAGA
21868417 ATTCGAGTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 16 0.31
40 15 0.29
41 2 0.04
42 18 0.35
ACGTcount: A:0.22, C:0.13, G:0.29, T:0.35
Consensus pattern (40 bp):
GGCACTTAGTGTGCGAGATTAAAATAGCTTCGGCTATTAT
Found at i:21869670 original size:24 final size:24
Alignment explanation
Indices: 21869625--21869670 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
21869615 AATTGATTAA
**
21869625 GATTGAATGATGATTATTTGTAAT
1 GATTGAATGATGATTAAATGTAAT
21869649 GATTGAATGTATGA-TAAATGTA
1 GATTGAATG-ATGATTAAATGTA
21869671 TTCTAAGTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (24 bp):
GATTGAATGATGATTAAATGTAAT
Found at i:21873706 original size:56 final size:56
Alignment explanation
Indices: 21873616--21873727 Score: 152
Period size: 56 Copynumber: 2.0 Consensus size: 56
21873606 GTTAATAGAT
* * * *
21873616 CTAATTAGTAATTTAATTTAAATATATCACGACAAATCCTAAGGTGATGACAAATC
1 CTAATTACTAATTTAATTTAAACATATCACGACAAATCCTAAGGAGATGAAAAATC
* * **
21873672 CTAATTACTTATTTAATTTAACCATATCTTGACAAATCCTAAGGAGATGAAAAATC
1 CTAATTACTAATTTAATTTAAACATATCACGACAAATCCTAAGGAGATGAAAAATC
21873728 ATATTTTATA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (56 bp):
CTAATTACTAATTTAATTTAAACATATCACGACAAATCCTAAGGAGATGAAAAATC
Found at i:21875958 original size:16 final size:16
Alignment explanation
Indices: 21875937--21875982 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
21875927 AATTAGGTTG
21875937 AGAAAATAATTTAATT
1 AGAAAATAATTTAATT
21875953 AGAAAATTAA-TTAATT
1 AGAAAA-TAATTTAATT
* *
21875969 -TAAATTAATTTAAT
1 AGAAAATAATTTAAT
21875983 AAATAACTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 3 0.12
15 8 0.31
16 12 0.46
17 3 0.12
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.41
Consensus pattern (16 bp):
AGAAAATAATTTAATT
Found at i:21879045 original size:51 final size:51
Alignment explanation
Indices: 21878990--21879121 Score: 158
Period size: 51 Copynumber: 2.6 Consensus size: 51
21878980 GTATATGGTG
*
21878990 TAAGACCATAGATGAAAGAGGCTATAGTAGTCTAGTAT-AAGGTATATAGCA
1 TAAGACCATAGATGAAAGAGGCTATAGCAGTCTAGTATGAA-GTATATAGCA
* * * * * *
21879041 TAAGACCATAGATGAAAGAGACTATAGCATTTTGGTATGCAGTATGTAGCA
1 TAAGACCATAGATGAAAGAGGCTATAGCAGTCTAGTATGAAGTATATAGCA
* * *
21879092 TAAGAACATAGATGAAAGAAGCTATGGCAG
1 TAAGACCATAGATGAAAGAGGCTATAGCAG
21879122 CATGGTACAC
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
51 67 0.99
52 1 0.01
ACGTcount: A:0.41, C:0.11, G:0.24, T:0.24
Consensus pattern (51 bp):
TAAGACCATAGATGAAAGAGGCTATAGCAGTCTAGTATGAAGTATATAGCA
Found at i:21879912 original size:27 final size:24
Alignment explanation
Indices: 21879859--21879908 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
21879849 AGTCTAGCGC
21879859 AGGTGCGCTGCTGAAATGATAACT
1 AGGTGCGCTGCTGAAATGATAACT
21879883 AGGTGCGCTGCTGAAATGATAACT
1 AGGTGCGCTGCTGAAATGATAACT
21879907 AG
1 AG
21879909 TAGGGAAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (24 bp):
AGGTGCGCTGCTGAAATGATAACT
Found at i:21883997 original size:41 final size:40
Alignment explanation
Indices: 21883794--21884010 Score: 301
Period size: 40 Copynumber: 5.4 Consensus size: 40
21883784 GATTGTCTTT
* * * *
21883794 GGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCCTC
1 GGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTC
* *
21883834 GGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTC
1 GGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTC
*
21883874 GGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTC
1 GGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTC
*
21883914 GGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTC
1 GGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTC
* * *
21883954 GGGACTTAACCCGGATTTAGTCACTTAGCACAAAAGCCTTC
1 GGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTC
*
21883995 GGGACTTAGCCCGGAT
1 GGGACTTAACCCGGAT
21884011 ACCATTCAAA
Statistics
Matches: 162, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
40 131 0.81
41 31 0.19
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
GGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTC
Found at i:21892119 original size:42 final size:41
Alignment explanation
Indices: 21892043--21892252 Score: 257
Period size: 40 Copynumber: 5.1 Consensus size: 41
21892033 CGGGAAATAG
* * *
21892043 CCCGGTTATAGTAATTCGCA-AAAATGCCCTCGGGACTTAA
1 CCCGGTTTTAGTAACTCGCACAAAATGCCTTCGGGACTTAA
* *
21892083 CCCGGTTTTGGTAACTCGCACAACAATGCCTTCGGGAATTAA
1 CCCGGTTTTAGTAACTCGCACAA-AATGCCTTCGGGACTTAA
* *
21892125 CCCGGATTTAGTAACTCGCAC-AAATGCCTTCGGGAATTAA
1 CCCGGTTTTAGTAACTCGCACAAAATGCCTTCGGGACTTAA
*
21892165 CCCGGATTTAGTAACTCGCAC-AAATGCCTTCGGGATCTTAA
1 CCCGGTTTTAGTAACTCGCACAAAATGCCTTCGGGA-CTTAA
* * *
21892206 CCCGGATTTTAGTCACTTAGCACAAAA-GCCTTCGGGACTTAG
1 CCCGG-TTTTAGTAAC-TCGCACAAAATGCCTTCGGGACTTAA
21892248 CCCGG
1 CCCGG
21892253 ATACCATTCA
Statistics
Matches: 152, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
40 70 0.46
41 12 0.08
42 52 0.34
43 15 0.10
44 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (41 bp):
CCCGGTTTTAGTAACTCGCACAAAATGCCTTCGGGACTTAA
Found at i:21892137 original size:82 final size:80
Alignment explanation
Indices: 21892030--21892254 Score: 265
Period size: 82 Copynumber: 2.8 Consensus size: 80
21892020 GCTCGATTGT
* * * * *
21892030 CTTCGGGAAATAGCCCGG-TTATAGTAATTCGCAAAAATGCCCTCGGGACTTAACCCGGTTTTGG
1 CTTCGGGAATTAACCCGGATT-TAGTAATTCGCAAAAATGCCTTCGGGACTTAACCCGGATTTAG
21892094 TAACTCGCACAACAATGC
65 TAACTCGCAC-A-AATGC
* * *
21892112 CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGT
1 CTTCGGGAATTAACCCGGATTTAGTAATTCGCAAAAATGCCTTCGGGACTTAACCCGGATTTAGT
21892177 AACTCGCACAAATGC
66 AACTCGCACAAATGC
* * * *
21892192 CTTCGGGATCTTAACCCGGATTTTAGTCACTTAGCACAAAA-GCCTTCGGGACTTAGCCCGGAT
1 CTTCGGGA-ATTAACCCGGA-TTTAGT-AATTCGCA-AAAATGCCTTCGGGACTTAACCCGGAT
21892255 ACCATTCAAA
Statistics
Matches: 123, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
80 13 0.11
81 11 0.09
82 69 0.56
83 27 0.22
84 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (80 bp):
CTTCGGGAATTAACCCGGATTTAGTAATTCGCAAAAATGCCTTCGGGACTTAACCCGGATTTAGT
AACTCGCACAAATGC
Found at i:21894909 original size:27 final size:27
Alignment explanation
Indices: 21894879--21894969 Score: 146
Period size: 27 Copynumber: 3.4 Consensus size: 27
21894869 CCCTAGAATA
* *
21894879 GGTAAAATGATCGTAATACCCCTTTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
21894906 GGTAATATGACCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
21894933 GGTAAAATGACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
21894960 GGTAAAATGA
1 GGTAAAATGA
21894970 TGATTATGCC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:21897235 original size:48 final size:48
Alignment explanation
Indices: 21897183--21897402 Score: 266
Period size: 48 Copynumber: 4.6 Consensus size: 48
21897173 GTCAGTACCG
*
21897183 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAAGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAAGCCA
* * *
21897231 ATGCCATGTCCCAGACATAGTCTTACA-TTG-ACTAGCATACCAACA-CCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCAC-A-CATATCAA-AGCCA
* * * * *
21897279 ACGCCATGTCCTAGACATGGTCTTACACTGGCTCACATATCGACGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAAGCCA
* * * * *
21897327 ATGCCATGTCCCAGACATGGCCTTACACTGGCTCACAGATCAAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAAGCCA
21897375 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
21897403 AGGATCTCAT
Statistics
Matches: 147, Mismatches: 19, Indels: 12
0.83 0.11 0.07
Matches are distributed among these distances:
46 2 0.01
47 3 0.02
48 137 0.93
49 4 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAAGCCA
Found at i:21903742 original size:45 final size:45
Alignment explanation
Indices: 21903675--21903838 Score: 206
Period size: 46 Copynumber: 3.6 Consensus size: 45
21903665 ATGTGTGCCA
21903675 GTGTAAGACATGTCTGGAACATGCATCGGCATCGAGACGAGAGCT
1 GTGTAAGACATGTCTGGAACATGCATCGGCATCGAGACGAGAGCT
* * * *
21903720 GTGTAAGACATGTCTGGGACATGCATCGGCCAT--ATTAAGAGAGCCA
1 GTGTAAGACATGTCTGGAACATGCATCGG-CATCGA-GACGAGAG-CT
* *
21903766 ATGTAAGACATGTCTGGAACATGCATCGGTATCGAGACGAGAGCT
1 GTGTAAGACATGTCTGGAACATGCATCGGCATCGAGACGAGAGCT
* *
21903811 AGTATAAGACATGTCTGGGACATGCATC
1 -GTGTAAGACATGTCTGGAACATGCATC
21903839 AGCCTCAAGA
Statistics
Matches: 100, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
44 1 0.01
45 37 0.37
46 61 0.61
47 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (45 bp):
GTGTAAGACATGTCTGGAACATGCATCGGCATCGAGACGAGAGCT
Found at i:21903801 original size:91 final size:92
Alignment explanation
Indices: 21903671--21903838 Score: 302
Period size: 91 Copynumber: 1.8 Consensus size: 92
21903661 TGATATGTGT
* *
21903671 GCCAGTGTAAGACATGTCTGGAACATGCATCGGCATCGAGACGAGAGCT-GTGTAAGACATGTCT
1 GCCAATGTAAGACATGTCTGGAACATGCATCGGCATCGAGACGAGAGCTAGTATAAGACATGTCT
21903735 GGGACATGCATCGGCCATATTAAGAGA
66 GGGACATGCATCGGCCATATTAAGAGA
*
21903762 GCCAATGTAAGACATGTCTGGAACATGCATCGGTATCGAGACGAGAGCTAGTATAAGACATGTCT
1 GCCAATGTAAGACATGTCTGGAACATGCATCGGCATCGAGACGAGAGCTAGTATAAGACATGTCT
21903827 GGGACATGCATC
66 GGGACATGCATC
21903839 AGCCTCAAGA
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
91 47 0.64
92 26 0.36
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.21
Consensus pattern (92 bp):
GCCAATGTAAGACATGTCTGGAACATGCATCGGCATCGAGACGAGAGCTAGTATAAGACATGTCT
GGGACATGCATCGGCCATATTAAGAGA
Found at i:21903978 original size:49 final size:49
Alignment explanation
Indices: 21903904--21904031 Score: 150
Period size: 49 Copynumber: 2.6 Consensus size: 49
21903894 TGTGTGTCAA
* * *
21903904 TGTAAGACCTGTCTAGGACATGGCATCGACAC-CGATAGATGAGAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATAAAAGCCAG
* * * **
21903953 TGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATATATAAAAGTTAG
1 TGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATAAAAGCCAG
* *
21904002 TGTAAGACCTATCTGGGACATGCCATCGAC
1 TGTAAGACCTGTCTGGGACATGGCATCGAC
21904032 TTTGATGTGC
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 1 0.02
49 65 0.98
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.22
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATAAAAGCCAG
Found at i:21910340 original size:28 final size:27
Alignment explanation
Indices: 21910274--21910343 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
21910264 ATAGTGAGTC
**
21910274 CGCACACTTAGTGCTATATAATCTGCT
1 CGCACACTTAGTGCTATATAATCAACT
*
21910301 CGCACACTTAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
21910329 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
21910344 GTACAAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:21910408 original size:34 final size:34
Alignment explanation
Indices: 21910365--21910434 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
21910355 AAACCCGCAC
21910365 ACTTAGTGCCAATCTTGTCACCGTGTCCATTTAT
1 ACTTAGTGCCAATCTTGTCACCGTGTCCATTTAT
21910399 ACTTAGTGCCAATCTTGTCACCGTGTCCATTTAT
1 ACTTAGTGCCAATCTTGTCACCGTGTCCATTTAT
21910433 AC
1 AC
21910435 CCGCACACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.21, C:0.27, G:0.14, T:0.37
Consensus pattern (34 bp):
ACTTAGTGCCAATCTTGTCACCGTGTCCATTTAT
Found at i:21910889 original size:2 final size:2
Alignment explanation
Indices: 21910882--21910910 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
21910872 TAATGGCCGA
21910882 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
21910911 CATGTACAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:21914483 original size:43 final size:41
Alignment explanation
Indices: 21914382--21914502 Score: 134
Period size: 43 Copynumber: 2.9 Consensus size: 41
21914372 TAGGGTTACT
* * *
21914382 AAGATTGCGTGTAAGACCATATCTGGGATATAGCATCGATAT
1 AAGATT-CATGTAAGACCATATCTGGGATATGGCATCGATAC
* * * * *
21914424 GATACTTCATGCAAGACCATAGCTGGGCTATTGGCATCGATAC
1 AAGA-TTCATGTAAGACCATATCTGGGATA-TGGCATCGATAC
21914467 AAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 AAGATT-CATGTAAGACCATATCTGGGATATGGCAT
21914503 TGGTACGGTA
Statistics
Matches: 63, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 29 0.46
43 34 0.54
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.27
Consensus pattern (41 bp):
AAGATTCATGTAAGACCATATCTGGGATATGGCATCGATAC
Found at i:21917210 original size:43 final size:42
Alignment explanation
Indices: 21917163--21917265 Score: 106
Period size: 41 Copynumber: 2.5 Consensus size: 42
21917153 AATGCCAACA
* **
21917163 TCCCAGACGTGGTCTTACAT-GTTATCTCATATCGATGCC-ACTG
1 TCCCAGACGTGGTCTTACATCG-AATCAAATA-CGATGCCGA-TG
21917206 TCCCAGACAG-GGTCTTAC-TCGAATCAAATACGATGCCGATG
1 TCCCAGAC-GTGGTCTTACATCGAATCAAATACGATGCCGATG
*
21917247 TCCCAGACATGGTCTTACA
1 TCCCAGACGTGGTCTTACA
21917266 CGTAACCACA
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
41 25 0.49
42 8 0.16
43 17 0.33
44 1 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (42 bp):
TCCCAGACGTGGTCTTACATCGAATCAAATACGATGCCGATG
Found at i:21917281 original size:22 final size:22
Alignment explanation
Indices: 21917253--21917297 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
21917243 GATGTCCCAG
21917253 ACATGGTCTTACACGTAACCAC
1 ACATGGTCTTACACGTAACCAC
21917275 ACATGGTCTTACACGTAACCAC
1 ACATGGTCTTACACGTAACCAC
21917297 A
1 A
21917298 TAGATCGATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.31, G:0.13, T:0.22
Consensus pattern (22 bp):
ACATGGTCTTACACGTAACCAC
Found at i:21917342 original size:45 final size:45
Alignment explanation
Indices: 21917278--21917421 Score: 166
Period size: 45 Copynumber: 3.2 Consensus size: 45
21917268 TAACCACACA
* *
21917278 TGGTCTTACACGTAACCACATAGATCGATGCCAACGTCCCAGATG
1 TGGTCTTACACATAACCACATAGATCGATGCCAACGTCCCAGACG
* * * *
21917323 TGGTCTTACATATAACCACATAGATCAATGTCAACGTCCTAGACG
1 TGGTCTTACACATAACCACATAGATCGATGCCAACGTCCCAGACG
** * *
21917368 TGGTCTTACACGA-AAATA-ATTATATAGATGCCAACGTCCCAGACG
1 TGGTCTTACAC-ATAACCACA-TAGATCGATGCCAACGTCCCAGACG
21917413 TGGTCTTAC
1 TGGTCTTAC
21917422 TCGAAAACAC
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
44 1 0.01
45 81 0.98
46 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (45 bp):
TGGTCTTACACATAACCACATAGATCGATGCCAACGTCCCAGACG
Found at i:21930748 original size:42 final size:42
Alignment explanation
Indices: 21930689--21930800 Score: 161
Period size: 42 Copynumber: 2.7 Consensus size: 42
21930679 TTAGGGTTAC
* *
21930689 TGAGACTATGTGTAAGACCATATCTGGGAAATGGCATCAATT
1 TGAGACTTTGTGTAAGACCATATCTGGGAAATGGCATCAATA
* *
21930731 TGAGACTTTGTGTAAGACCATGTCTGGGATATGGCATCAATA
1 TGAGACTTTGTGTAAGACCATATCTGGGAAATGGCATCAATA
* * *
21930773 TGAGACTTCGTGTAAGACTATAGCTGGG
1 TGAGACTTTGTGTAAGACCATATCTGGG
21930801 CTATTGGCAT
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (42 bp):
TGAGACTTTGTGTAAGACCATATCTGGGAAATGGCATCAATA
Found at i:21933252 original size:39 final size:39
Alignment explanation
Indices: 21933208--21933433 Score: 364
Period size: 39 Copynumber: 5.8 Consensus size: 39
21933198 TACCAGTACA
* *
21933208 AAGCCTGCGGGACTTTAGCTCGGATACATTTCTAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
21933247 AAGCCTGCGGGACTTTAGCCCGGATATATTTCCAACACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
21933286 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* * *
21933325 AAGCCTACGGGACTTTAGCCCGGATACATTT-CAACATG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
21933363 AAGCCTACGAGACTTTAGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
21933402 AAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTC
21933434 TAGTGTCTTG
Statistics
Matches: 172, Mismatches: 14, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
38 35 0.20
39 137 0.80
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
Found at i:21933396 original size:77 final size:77
Alignment explanation
Indices: 21933208--21933433 Score: 380
Period size: 77 Copynumber: 2.9 Consensus size: 77
21933198 TACCAGTACA
* *
21933208 AAGCCTGCGGGACTTTAGCTCGGATACATTTCTAGCACGAAGCCTGCGGGACTTTAGCCCGGATA
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATA
*
21933273 TATTTCCAACACG
66 CATTT-CAACACG
*
21933286 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTACGGGACTTTAGCCCGGATA
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATA
*
21933351 CATTTCAACATG
66 CATTTCAACACG
* *
21933363 AAGCCTACGAGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATA
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATA
21933428 CATTTC
66 CATTTC
21933434 TAGTGTCTTG
Statistics
Matches: 140, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
77 74 0.53
78 66 0.47
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (77 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATA
CATTTCAACACG
Found at i:21933413 original size:116 final size:117
Alignment explanation
Indices: 21933208--21933433 Score: 373
Period size: 116 Copynumber: 1.9 Consensus size: 117
21933198 TACCAGTACA
* * * * *
21933208 AAGCCTGCGGGACTTTAGCTCGGATACATTTCTAGCACGAAGCCTGCGGGACTTTAGCCCGGATA
1 AAGCCTACGGGACTTTAGCCCGGATACATTTCTAACACGAAGCCTACGAGACTTTAGCCCGGATA
*
21933273 TATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
66 CATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
21933325 AAGCCTACGGGACTTTAGCCCGGATACATTTC-AACATGAAGCCTACGAGACTTTAGCCCGGATA
1 AAGCCTACGGGACTTTAGCCCGGATACATTTCTAACACGAAGCCTACGAGACTTTAGCCCGGATA
*
21933389 CATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
66 CATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
21933434 TAGTGTCTTG
Statistics
Matches: 101, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
116 71 0.70
117 30 0.30
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (117 bp):
AAGCCTACGGGACTTTAGCCCGGATACATTTCTAACACGAAGCCTACGAGACTTTAGCCCGGATA
CATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
Found at i:21937621 original size:25 final size:25
Alignment explanation
Indices: 21937593--21937640 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
21937583 AATCGTAACA
*
21937593 TATACTCAAGAGGTATTATATCAGG
1 TATACTCAAGAGATATTATATCAGG
21937618 TATACTCAAGAGATATTATATCA
1 TATACTCAAGAGATATTATATCA
21937641 AGATTACCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (25 bp):
TATACTCAAGAGATATTATATCAGG
Found at i:21937688 original size:18 final size:18
Alignment explanation
Indices: 21937665--21937701 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
21937655 GGCTAAATTC
21937665 TTTCTATAACAAGGTCAA
1 TTTCTATAACAAGGTCAA
21937683 TTTCTATAACAAGGTCAA
1 TTTCTATAACAAGGTCAA
21937701 T
1 T
21937702 AGGATTACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (18 bp):
TTTCTATAACAAGGTCAA
Found at i:21940266 original size:15 final size:15
Alignment explanation
Indices: 21940225--21940272 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
21940215 CTTTATAAAA
*
21940225 TGAAAATTTAATTAT
1 TGAAAATTTAAGTAT
*
21940240 TGGAAAA-ATAAGTAT
1 T-GAAAATTTAAGTAT
*
21940255 TGAAAATTTAAGTGT
1 TGAAAATTTAAGTAT
21940270 TGA
1 TGA
21940273 GTTTATGTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 5 0.19
15 17 0.63
16 5 0.19
ACGTcount: A:0.46, C:0.00, G:0.17, T:0.38
Consensus pattern (15 bp):
TGAAAATTTAAGTAT
Found at i:21943729 original size:22 final size:23
Alignment explanation
Indices: 21943696--21943750 Score: 69
Period size: 22 Copynumber: 2.4 Consensus size: 23
21943686 CAAAATTTTG
*
21943696 AAAATTATATTATAAT-TTTTATA
1 AAAATTATATTA-AATATATTATA
21943719 AAAATTA-ATTAAATATATTATA
1 AAAATTATATTAAATATATTATA
21943741 AAACATTATA
1 AAA-ATTATA
21943751 CATGAAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 3 0.11
22 13 0.46
23 11 0.39
24 1 0.04
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
AAAATTATATTAAATATATTATA
Found at i:21954164 original size:24 final size:24
Alignment explanation
Indices: 21954136--21954187 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
21954126 AGTAGAAAGG
21954136 ACCAAAATGAGAAATATGCCATTT
1 ACCAAAATGAGAAATATGCCATTT
21954160 ACCAAAATGAGAAATATGCCATTT
1 ACCAAAATGAGAAATATGCCATTT
21954184 ACCA
1 ACCA
21954188 TAAGTTGAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.46, C:0.19, G:0.12, T:0.23
Consensus pattern (24 bp):
ACCAAAATGAGAAATATGCCATTT
Found at i:21954545 original size:13 final size:13
Alignment explanation
Indices: 21954527--21954564 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
21954517 TCGAAACAGA
*
21954527 AAAGAAAAGAAGG
1 AAAGAAAAGAAAG
*
21954540 AAAGAAAGGAAAG
1 AAAGAAAAGAAAG
21954553 AAAG-AAAGAAAG
1 AAAGAAAAGAAAG
21954565 GGAAATTAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 7 0.32
13 15 0.68
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (13 bp):
AAAGAAAAGAAAG
Found at i:21954565 original size:17 final size:17
Alignment explanation
Indices: 21954527--21954565 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
21954517 TCGAAACAGA
* *
21954527 AAAGAAAAGAAGGAAAG
1 AAAGGAAAGAAAGAAAG
21954544 AAAGGAAAGAAAGAAAG
1 AAAGGAAAGAAAGAAAG
21954561 AAAGG
1 AAAGG
21954566 GAAATTAGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (17 bp):
AAAGGAAAGAAAGAAAG
Found at i:21955576 original size:44 final size:44
Alignment explanation
Indices: 21955527--21955618 Score: 123
Period size: 44 Copynumber: 2.1 Consensus size: 44
21955517 TGTTCAGGGA
*
21955527 TACTTCGACCTT-GAGTCGATAAGGCACTATAAGTGTCATACTGT
1 TACTTCGA-CTTCGAGTCGATAAGGCACTATAAGTGTCATACTGC
* ** *
21955571 TACTTCGACTTCGAGTCGATGAGGCACTATGTGTGTCGTACTGC
1 TACTTCGACTTCGAGTCGATAAGGCACTATAAGTGTCATACTGC
21955615 TACT
1 TACT
21955619 GTTACATCGG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
43 3 0.07
44 39 0.93
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.33
Consensus pattern (44 bp):
TACTTCGACTTCGAGTCGATAAGGCACTATAAGTGTCATACTGC
Found at i:21957115 original size:27 final size:27
Alignment explanation
Indices: 21957080--21957134 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
21957070 AATTAGGGAC
21957080 TAAATTGAATAAATTGCAAAACCTGGA
1 TAAATTGAATAAATTGCAAAACCTGGA
*
21957107 TAAATTGAATAAATTGCAAAACTTGGA
1 TAAATTGAATAAATTGCAAAACCTGGA
21957134 T
1 T
21957135 TCTAGAAGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.47, C:0.09, G:0.15, T:0.29
Consensus pattern (27 bp):
TAAATTGAATAAATTGCAAAACCTGGA
Found at i:21969781 original size:48 final size:48
Alignment explanation
Indices: 21969725--21969817 Score: 159
Period size: 48 Copynumber: 1.9 Consensus size: 48
21969715 ACCATGGCAA
*
21969725 TATGTGAGCCAGTGTAAGACCATGCCTGGGACATGGCATCGGCATTGT
1 TATGTGAGCCAGTGTAAGACCATACCTGGGACATGGCATCGGCATTGT
**
21969773 TATGTGAGCCAGTGTAAGACCATATTTGGGACATGGCATCGGCAT
1 TATGTGAGCCAGTGTAAGACCATACCTGGGACATGGCATCGGCAT
21969818 GAGGCATCGT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATACCTGGGACATGGCATCGGCATTGT
Found at i:21971421 original size:24 final size:24
Alignment explanation
Indices: 21971390--21971437 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
21971380 TGAGTGAATG
21971390 TGTGATAATTATATGTGGCAAATA
1 TGTGATAATTATATGTGGCAAATA
21971414 TGTGATAATTATATGTGGCAAATA
1 TGTGATAATTATATGTGGCAAATA
21971438 CTAAATGTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.21, T:0.38
Consensus pattern (24 bp):
TGTGATAATTATATGTGGCAAATA
Found at i:21971429 original size:13 final size:13
Alignment explanation
Indices: 21971390--21971430 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
21971380 TGAGTGAATG
21971390 TGTGATAATTATA
1 TGTGATAATTATA
**
21971403 TGTGGCAA--ATA
1 TGTGATAATTATA
21971414 TGTGATAATTATA
1 TGTGATAATTATA
21971427 TGTG
1 TGTG
21971431 GCAAATACTA
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
11 9 0.41
13 13 0.59
ACGTcount: A:0.34, C:0.02, G:0.22, T:0.41
Consensus pattern (13 bp):
TGTGATAATTATA
Found at i:21976865 original size:7 final size:7
Alignment explanation
Indices: 21976853--21976888 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
21976843 CATGATATCA
21976853 TTATTTT
1 TTATTTT
21976860 TTATTTT
1 TTATTTT
21976867 TTATTTT
1 TTATTTT
21976874 TTATTTT
1 TTATTTT
21976881 TTATTTT
1 TTATTTT
21976888 T
1 T
21976889 ACTGTATACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTATTTT
Found at i:21979168 original size:7 final size:8
Alignment explanation
Indices: 21979139--21979168 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
21979129 CATACATTGT
21979139 TTTGAAAA
1 TTTGAAAA
21979147 TTTGAAAA
1 TTTGAAAA
21979155 TTTGAAAA
1 TTTGAAAA
21979163 -TTGAAA
1 TTTGAAA
21979169 GAAAATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 6 0.27
8 16 0.73
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (8 bp):
TTTGAAAA
Found at i:21979904 original size:12 final size:12
Alignment explanation
Indices: 21979887--21979921 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
21979877 ATTCATTTAT
*
21979887 ATTTTTTTTTTC
1 ATTTTTATTTTC
21979899 ATTTTTATTTTC
1 ATTTTTATTTTC
*
21979911 ATTTTCATTTT
1 ATTTTTATTTT
21979922 TTAAATATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (12 bp):
ATTTTTATTTTC
Found at i:21979921 original size:18 final size:18
Alignment explanation
Indices: 21979878--21979922 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
21979868 ACGTTTGTCA
* **
21979878 TTCATTTATATTTTTTTT
1 TTCATTTTTATTTTCATT
21979896 TTCATTTTTATTTTCATT
1 TTCATTTTTATTTTCATT
21979914 TTCATTTTT
1 TTCATTTTT
21979923 TAAATATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.76
Consensus pattern (18 bp):
TTCATTTTTATTTTCATT
Found at i:21980676 original size:35 final size:35
Alignment explanation
Indices: 21980619--21980686 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
21980609 TCTCCGGAGT
*
21980619 TTGGCAAATACGGAACGTGATCTTCAAAGATATGC
1 TTGGCAAATACGGAACGGGATCTTCAAAGATATGC
* *
21980654 TTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 TTGGCAAATACGGAACGGGATCTTCAAAGATAT
21980687 ATAATCCTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.26
Consensus pattern (35 bp):
TTGGCAAATACGGAACGGGATCTTCAAAGATATGC
Found at i:21981404 original size:33 final size:32
Alignment explanation
Indices: 21981362--21981429 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 32
21981352 TGTTAGAAGT
*
21981362 TGACTGTAGGGA-TGATGCCATCAAGGCTATGA
1 TGACTGTA-GGACTGATGCCATCAAGGCTATAA
**
21981394 TGACTAGTAGGACTGATGCCATTGAGGCTATAA
1 TGACT-GTAGGACTGATGCCATCAAGGCTATAA
21981427 TGA
1 TGA
21981430 TGACCTTGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 8 0.26
33 23 0.74
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (32 bp):
TGACTGTAGGACTGATGCCATCAAGGCTATAA
Found at i:21985783 original size:35 final size:35
Alignment explanation
Indices: 21985744--21985814 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
21985734 CATCTCCTAA
*
21985744 GCTTGGCAAATATGGAAAGTGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGGATCTTCAAAGATAT
* *
21985779 GCTTGGCAAATATGGAAGGGGATCTTCAAATATAT
1 GCTTGGCAAATATGGAAAGGGATCTTCAAAGATAT
21985814 G
1 G
21985815 TGATCCTAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.28
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAAGGGATCTTCAAAGATAT
Found at i:21986656 original size:19 final size:21
Alignment explanation
Indices: 21986619--21986670 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
21986609 CATCTCTACA
*
21986619 AAAAAATTCAAAATAATTT-T
1 AAAAATTTCAAAATAATTTAT
*
21986639 CAAAATTTCAAAAT-ATTTAT
1 AAAAATTTCAAAATAATTTAT
21986659 AAAAATTTCAAA
1 AAAAATTTCAAA
21986671 TTTATATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 4 0.14
20 24 0.86
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.35
Consensus pattern (21 bp):
AAAAATTTCAAAATAATTTAT
Found at i:21986724 original size:31 final size:29
Alignment explanation
Indices: 21986680--21986746 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
21986670 ATTTATATTT
*
21986680 TTAAAAAATTATAAA-AAAATTCAAAAAAA
1 TTAAAAAAATATAAAGAAAATT-AAAAAAA
* *
21986709 TCTAAAAAACATATAAAGAAAGTTTAAAAAA
1 T-TAAAAAA-ATATAAAGAAAATTAAAAAAA
21986740 TTAAAAA
1 TTAAAAA
21986747 TTTTCTAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
29 1 0.03
30 13 0.41
31 13 0.41
32 5 0.16
ACGTcount: A:0.69, C:0.04, G:0.03, T:0.24
Consensus pattern (29 bp):
TTAAAAAAATATAAAGAAAATTAAAAAAA
Found at i:21989213 original size:21 final size:22
Alignment explanation
Indices: 21989168--21989221 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
21989158 TAATTTGAAT
21989168 TAAAATTTTATATAATAATTCA
1 TAAAATTTTATATAATAATTCA
*
21989190 TAAAGATTTTATATTA-AATT-A
1 TAAA-ATTTTATATAATAATTCA
21989211 T-AAATTTTATA
1 TAAAATTTTATA
21989222 GGTCAAATGC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 8 0.27
20 2 0.07
21 2 0.07
22 8 0.27
23 10 0.33
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TAAAATTTTATATAATAATTCA
Found at i:21989945 original size:28 final size:29
Alignment explanation
Indices: 21989887--21989948 Score: 74
Period size: 28 Copynumber: 2.1 Consensus size: 29
21989877 AATTATAAAA
*
21989887 AATAAAAATCAATAAAATTTATTGAATTTT
1 AATAAAAAT-AATAAAATATATTGAATTTT
*
21989917 AATAAAAAT-ATAAAA-ATATTTAATATTT
1 AATAAAAATAATAAAATATATTGAAT-TTT
21989945 AATA
1 AATA
21989949 TTTATCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 7 0.24
28 13 0.45
30 9 0.31
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (29 bp):
AATAAAAATAATAAAATATATTGAATTTT
Found at i:21989992 original size:27 final size:29
Alignment explanation
Indices: 21989960--21990014 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 29
21989950 TTATCAAAAA
*
21989960 TTATAAAAACCAT-AAAAA-TATAAAATT
1 TTATAAAAACAATAAAAAATTATAAAATT
*
21989987 TTATAAAAATAATAAAAAATTATAAAAT
1 TTATAAAAACAATAAAAAATTATAAAAT
21990015 GCATCAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 11 0.46
28 5 0.21
29 8 0.33
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (29 bp):
TTATAAAAACAATAAAAAATTATAAAATT
Found at i:21989995 original size:19 final size:19
Alignment explanation
Indices: 21989971--21990013 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
21989961 TATAAAAACC
**
21989971 ATAAAAAT-ATAAAATTTT
1 ATAAAAATAATAAAAAATT
21989989 ATAAAAATAATAAAAAATT
1 ATAAAAATAATAAAAAATT
21990008 ATAAAA
1 ATAAAA
21990014 TGCATCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
ATAAAAATAATAAAAAATT
Found at i:21990003 original size:9 final size:9
Alignment explanation
Indices: 21989950--21990013 Score: 58
Period size: 9 Copynumber: 6.9 Consensus size: 9
21989940 TATTTAATAT
21989950 TTATCAAAAA
1 TTAT-AAAAA
21989960 TTATAAAAA
1 TTATAAAAA
**
21989969 CCATAAAAA
1 TTATAAAAA
*
21989978 -TATAAAATT
1 TTATAAAA-A
21989987 TTATAAAAA
1 TTATAAAAA
*
21989996 TAATAAAAAA
1 TTAT-AAAAA
21990006 TTATAAAA
1 TTATAAAA
21990014 TGCATCAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
8 6 0.14
9 19 0.43
10 19 0.43
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (9 bp):
TTATAAAAA
Found at i:21990014 original size:36 final size:36
Alignment explanation
Indices: 21989911--21990014 Score: 92
Period size: 36 Copynumber: 2.9 Consensus size: 36
21989901 AAATTTATTG
* * *
21989911 AATTTTAATAAAAATATAAAAATATT-TAATATTTAA
1 AATTTT-ATAAAAATATAAAAACATTATAAAATATAA
*
21989947 TA-TTTATCAAAAATTATAAAAACCA-TA-AAAATATAA
1 AATTTTAT-AAAAA-TATAAAAA-CATTATAAAATATAA
21989983 AATTTTATAAAAATAATAAAAA-ATTATAAAAT
1 AATTTTATAAAAAT-ATAAAAACATTATAAAAT
21990015 GCATCAAAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 16
0.72 0.07 0.21
Matches are distributed among these distances:
34 3 0.05
35 11 0.20
36 35 0.64
37 6 0.11
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (36 bp):
AATTTTATAAAAATATAAAAACATTATAAAATATAA
Found at i:21990250 original size:19 final size:19
Alignment explanation
Indices: 21990226--21990321 Score: 59
Period size: 19 Copynumber: 4.7 Consensus size: 19
21990216 CTTTATAAAA
21990226 TTTTATAATTTTTTTATATT
1 TTTTATAATTTTTTTATA-T
* *
21990246 TTTATATATTTTATTTTTTTACAA
1 TTT-TATA----ATTTTTTTATAT
* *
21990270 TTTTATAAATTTTTTACGAT
1 TTTTATAATTTTTTTA-TAT
* *
21990290 TTTTATAATTTTAATTCT-T
1 TTTTATAATTTT-TTTATAT
21990309 TTTTATAATTTTT
1 TTTTATAATTTTT
21990322 ATCATCTTTT
Statistics
Matches: 59, Mismatches: 10, Indels: 16
0.69 0.12 0.19
Matches are distributed among these distances:
19 21 0.36
20 15 0.25
21 6 0.10
23 4 0.07
24 3 0.05
25 10 0.17
ACGTcount: A:0.27, C:0.03, G:0.01, T:0.69
Consensus pattern (19 bp):
TTTTATAATTTTTTTATAT
Done.