Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 86 of 438
Found at i:23575372 original size:37 final size:37
Alignment explanation
Indices: 23575330--23575410 Score: 117
Period size: 37 Copynumber: 2.2 Consensus size: 37
23575320 CGGGGTTTTA
* * *
23575330 ACCCGGATAAAATCTCCACACGTGGTCTTCAGGTCTT
1 ACCCGGACAAAATCTCCACACGTAGTCATCAGGTCTT
* *
23575367 ACCCGGACAGAATCTCCACACGTAGTCATCGGGTCTT
1 ACCCGGACAAAATCTCCACACGTAGTCATCAGGTCTT
23575404 ACCCGGA
1 ACCCGGA
23575411 ATATATTTCC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (37 bp):
ACCCGGACAAAATCTCCACACGTAGTCATCAGGTCTT
Found at i:23575709 original size:54 final size:48
Alignment explanation
Indices: 23575569--23575694 Score: 180
Period size: 48 Copynumber: 2.6 Consensus size: 48
23575559 TATTGCACAA
* * *
23575569 TAGCCATTCGGCTTTACCAAATATACATCTCTCGTACATATTTCATAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCGTACATATCTCATAT
* * *
23575617 TAGCCATTTGGCTTTACCACATATACATATCTCATACATGTCTCATAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCGTACATATCTCATAT
* *
23575665 TAGCCATTCGGCTTTACCACACATATATAT
1 TAGCCATTCGGCTTTACCACATATACATAT
23575695 ATTTATCTTG
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.37
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCGTACATATCTCATAT
Found at i:23581005 original size:294 final size:294
Alignment explanation
Indices: 23580476--23581064 Score: 1115
Period size: 294 Copynumber: 2.0 Consensus size: 294
23580466 TCCCTCCTGT
*
23580476 AACACCCCGAACCCGAGACTGTTGCCGGTGTCGGACACGAGGGGTTAACAAGCCAAAACCACTTA
1 AACACCCCGAACCCGAGACCGTTGCCGGTGTCGGACACGAGGGGTTAACAAGCCAAAACCACTTA
*
23580541 TAGCACCGACCAACTTGACATTCCCAGGCAAGCTGGAAAACTGCGTCACTGTTGCCTTAAAAAGC
66 TAGCACCGACCAACTTGACATTCCCAGGCAAGCTGGAAAACTGCATCACTGTTGCCTTAAAAAGC
23580606 ATATCTCAAGTTACAGAACTCGGAAACTGATTCCGTAAATTTTCCCTGAATTTAGACTCATATAT
131 ATATCTCAAGTTACAGAACTCGGAAACTGATTCCGTAAATTTTCCCTGAATTTAGACTCATATAT
23580671 CCATCCCTGGATTTATTTCTAGAATTTTTGGTCGGGCCAATTGGTACAGTTTATTAGTTAAAGTC
196 CCATCCCTGGATTTATTTCTAGAATTTTTGGTCGGGCCAATTGGTACAGTTTATTAGTTAAAGTC
23580736 ACCCATGTTACAGGGGTCGACTACACTGACCTTC
261 ACCCATGTTACAGGGGTCGACTACACTGACCTTC
23580770 AACACCCCGAACCCGAGACCGTTGCCGGTGTCGGACACGAGGGGTTAACAAGCCAAAACCACTTA
1 AACACCCCGAACCCGAGACCGTTGCCGGTGTCGGACACGAGGGGTTAACAAGCCAAAACCACTTA
* * *
23580835 TAGCACCGGCCAACTTGACATTTCCAGGCAAGCTGGAAAACTGCATCACTGTTTCCTTAAAAAGC
66 TAGCACCGACCAACTTGACATTCCCAGGCAAGCTGGAAAACTGCATCACTGTTGCCTTAAAAAGC
*
23580900 ATATCTCGAGTTACAGAACTCGGAAACTGATTCCGTAAATTTTCCCTGAATTTAGACTCATATAT
131 ATATCTCAAGTTACAGAACTCGGAAACTGATTCCGTAAATTTTCCCTGAATTTAGACTCATATAT
*
23580965 CCATCCTTGGATTTATTTCTAGAATTTTTGGTCGGGCCAATTGGTACAGTTTATTAGTTAAAGTC
196 CCATCCCTGGATTTATTTCTAGAATTTTTGGTCGGGCCAATTGGTACAGTTTATTAGTTAAAGTC
23581030 ACCCATGTTACAGGGGTCGACTACACTGACCTTC
261 ACCCATGTTACAGGGGTCGACTACACTGACCTTC
23581064 A
1 A
23581065 CGCGTTACAA
Statistics
Matches: 288, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
294 288 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (294 bp):
AACACCCCGAACCCGAGACCGTTGCCGGTGTCGGACACGAGGGGTTAACAAGCCAAAACCACTTA
TAGCACCGACCAACTTGACATTCCCAGGCAAGCTGGAAAACTGCATCACTGTTGCCTTAAAAAGC
ATATCTCAAGTTACAGAACTCGGAAACTGATTCCGTAAATTTTCCCTGAATTTAGACTCATATAT
CCATCCCTGGATTTATTTCTAGAATTTTTGGTCGGGCCAATTGGTACAGTTTATTAGTTAAAGTC
ACCCATGTTACAGGGGTCGACTACACTGACCTTC
Found at i:23590157 original size:20 final size:20
Alignment explanation
Indices: 23590132--23590178 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
23590122 GATTTGATAT
23590132 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
23590152 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
23590172 ACATGAT
1 ACATGAT
23590179 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:23590253 original size:25 final size:24
Alignment explanation
Indices: 23590225--23590318 Score: 102
Period size: 25 Copynumber: 3.8 Consensus size: 24
23590215 GGGAAGTGCA
23590225 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTATGCCCCAGTTTA-CG
*
23590250 AAAAGGGCTTTGCCCCAGTTTATC-
1 AAAAGGGCTATGCCCCAGTTTA-CG
* *
23590274 AAAAGGGCTTTGCCCCAG-TTATG
1 AAAAGGGCTATGCCCCAGTTTACG
*
23590297 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTATGCC-CCAGTT
23590319 ATATGATAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
23 8 0.13
24 25 0.42
25 26 0.43
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.23
Consensus pattern (24 bp):
AAAAGGGCTATGCCCCAGTTTACG
Found at i:23590282 original size:24 final size:24
Alignment explanation
Indices: 23590225--23590306 Score: 112
Period size: 24 Copynumber: 3.4 Consensus size: 24
23590215 GGGAAGTGCA
* *
23590225 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
23590249 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
23590274 AAAAGGGCTTTGCCCCAG-TTATG
1 AAAAGGGCTTTGCCCCAGTTTATC
23590297 AAAAGAGGCT
1 AAAAG-GGCT
23590307 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
23 9 0.17
24 22 0.42
25 22 0.42
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.23
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:23590317 original size:49 final size:49
Alignment explanation
Indices: 23590225--23590318 Score: 120
Period size: 49 Copynumber: 1.9 Consensus size: 49
23590215 GGGAAGTGCA
**
23590225 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATC
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATC
* *
23590274 AAAAGGGCTTTGCCCCAG-TTA-TGAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
23590319 ATATGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
47 6 0.15
48 10 0.26
49 23 0.59
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.23
Consensus pattern (49 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATC
Found at i:23590568 original size:30 final size:31
Alignment explanation
Indices: 23590515--23590577 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
23590505 CGTTTACAGT
23590515 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
23590546 AAAGGCTTCGG-CCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
23590576 AA
1 AA
23590578 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 19 0.63
31 11 0.37
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:23592718 original size:12 final size:14
Alignment explanation
Indices: 23592689--23592733 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
23592679 TGCATGAAGA
23592689 CAAAAGCAGCACAG
1 CAAAAGCAGCACAG
23592703 CAAAA-CAGCA-AG
1 CAAAAGCAGCACAG
*
23592715 CAAAAGAAG-ACGAG
1 CAAAAGCAGCAC-AG
23592729 CAAAA
1 CAAAA
23592734 TTTTTTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 8 0.30
13 7 0.26
14 12 0.44
ACGTcount: A:0.58, C:0.22, G:0.20, T:0.00
Consensus pattern (14 bp):
CAAAAGCAGCACAG
Found at i:23593647 original size:18 final size:18
Alignment explanation
Indices: 23593624--23593671 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
23593614 TTATTATTTA
23593624 TTTTATATTATTATCATT-
1 TTTTATATTATT-TCATTG
23593642 TTTTATATTA-TTCATTG
1 TTTTATATTATTTCATTG
*
23593659 TTTTAAATTATTT
1 TTTTATATTATTT
23593672 TATGTTATTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 5 0.19
17 10 0.37
18 12 0.44
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTATATTATTTCATTG
Found at i:23593662 original size:17 final size:16
Alignment explanation
Indices: 23593615--23593670 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 16
23593605 AAAATTGTTT
* *
23593615 TATTATTTATTTTATA
1 TATTATTCATTTTTTA
23593631 TTATTA-TCATTTTTTA
1 -TATTATTCATTTTTTA
23593647 TATTATTCATTGTTTTA
1 TATTATTCATT-TTTTA
*
23593664 AATTATT
1 TATTATT
23593671 TTATGTTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
15 5 0.15
16 13 0.38
17 16 0.47
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.66
Consensus pattern (16 bp):
TATTATTCATTTTTTA
Found at i:23593672 original size:27 final size:26
Alignment explanation
Indices: 23593642--23593698 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 26
23593632 TATTATCATT
23593642 TTTTATATTATTCATTGTTTTAAATTA
1 TTTTATATTATTCATT-TTTTAAATTA
* * *
23593669 TTTTATGTTATTCATTTTTTTATTTA
1 TTTTATATTATTCATTTTTTAAATTA
23593695 TTTT
1 TTTT
23593699 CGTTTGTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 12 0.44
27 15 0.56
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.70
Consensus pattern (26 bp):
TTTTATATTATTCATTTTTTAAATTA
Found at i:23598293 original size:76 final size:78
Alignment explanation
Indices: 23598181--23598370 Score: 339
Period size: 76 Copynumber: 2.4 Consensus size: 78
23598171 TATGGTAACC
* *
23598181 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
23598246 CGGATATCATAGCT
65 CGGATATCATAGCT
23598260 -GCAC-ATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
23598323 GGATATCATAGCT
66 GGATATCATAGCT
23598336 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
23598371 TCAACATTCA
Statistics
Matches: 107, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
76 59 0.55
77 15 0.14
78 33 0.31
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.24
Consensus pattern (78 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
GGATATCATAGCT
Found at i:23598318 original size:39 final size:39
Alignment explanation
Indices: 23598181--23598370 Score: 303
Period size: 39 Copynumber: 4.9 Consensus size: 39
23598171 TATGGTAACC
* *
23598181 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
23598221 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
23598260 -GCAC-ATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
23598297 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
23598336 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
23598371 TCAACATTCA
Statistics
Matches: 139, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
37 31 0.22
38 8 0.06
39 83 0.60
40 17 0.12
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:23604600 original size:37 final size:39
Alignment explanation
Indices: 23604505--23604691 Score: 301
Period size: 37 Copynumber: 4.9 Consensus size: 39
23604495 TATGGTAACC
* * * *
23604505 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
23604545 CGCACAATTGCCTTCGGGCTTAGCCCGG-TATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
23604583 CGCAC-ATTGCCTTCGGGCTTAGCCCGGATATCA-A-CT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
23604619 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
23604658 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
23604692 CTCGAACATT
Statistics
Matches: 139, Mismatches: 4, Indels: 9
0.91 0.03 0.06
Matches are distributed among these distances:
36 7 0.05
37 51 0.37
38 19 0.14
39 45 0.32
40 17 0.12
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:23604679 original size:76 final size:75
Alignment explanation
Indices: 23604505--23604695 Score: 314
Period size: 76 Copynumber: 2.5 Consensus size: 75
23604495 TATGGTAACC
* *
23604505 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATAT--CAACTCGCACAATTGCCTTCGGGCTTAGCC
23604570 CGGTATCATAGCT
63 CGGTATCATAGCT
23604583 CGCAC-ATTGCCTTCGGGCTTAGCCCGGATATCAACTCGCACAATTGCCTTCGGGCTTAGCCCGG
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAACTCGCACAATTGCCTTCGGGCTTAGCCCGG
23604647 ATATCATAGCT
66 -TATCATAGCT
23604658 CGCACAATTGCCTTCGGGCTTAGCCCGGATATC-ACTCG
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAACTCG
23604696 AACATTCATA
Statistics
Matches: 109, Mismatches: 2, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
74 33 0.30
75 20 0.18
76 40 0.37
77 11 0.10
78 5 0.05
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.24
Consensus pattern (75 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAACTCGCACAATTGCCTTCGGGCTTAGCCCGG
TATCATAGCT
Found at i:23608900 original size:13 final size:13
Alignment explanation
Indices: 23608882--23608919 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
23608872 GCATCCAGGG
23608882 CCATGCCCGTGTC
1 CCATGCCCGTGTC
*
23608895 CCATGCCCGTGCC
1 CCATGCCCGTGTC
23608908 CCATGCCCGTGT
1 CCATGCCCGTGT
23608920 GAATTAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.08, C:0.47, G:0.24, T:0.21
Consensus pattern (13 bp):
CCATGCCCGTGTC
Found at i:23620165 original size:19 final size:19
Alignment explanation
Indices: 23620141--23620181 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
23620131 CACTAGCTCT
*
23620141 CATATACCCGCGCCGATGC
1 CATATACCCGCACCGATGC
**
23620160 CATATACTGGCACCGATGC
1 CATATACCCGCACCGATGC
23620179 CAT
1 CAT
23620182 GTCCCAGACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.24, C:0.37, G:0.20, T:0.20
Consensus pattern (19 bp):
CATATACCCGCACCGATGC
Found at i:23620274 original size:46 final size:46
Alignment explanation
Indices: 23620179--23620387 Score: 194
Period size: 46 Copynumber: 4.5 Consensus size: 46
23620169 GCACCGATGC
* * *
23620179 CATGTCCCAGACATGGTCTTACA-TTG-ACACATCTCGTA-GCCAATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCG-AGGCCAATG
* *
23620224 CATGTCCCAGACATGTCTTACACTGGCT-TACATCTTGAGGCTAATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGGCCAATG
* * ** * *
23620270 CATGTCCCAGACATTTCTTACACTAGCTCTCGCCTCAATGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCAATG
* * * *
23620316 CCATGTCCCAGACATGGTCTTACACTGGCTCTTATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGCCAATG
23620364 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
23620388 AGTGCACAGA
Statistics
Matches: 133, Mismatches: 23, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
44 8 0.06
45 17 0.13
46 58 0.44
47 29 0.22
48 20 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCAATG
Found at i:23620365 original size:94 final size:92
Alignment explanation
Indices: 23620217--23620389 Score: 249
Period size: 94 Copynumber: 1.9 Consensus size: 92
23620207 ACATCTCGTA
** *
23620217 GCCAATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAGGCTAATGCATGTCCCAGAC
1 GCCAATGCATGTCCCAGACATGTCTTACACTGGCTTACATAATGAGGCCAATGCATGTCCCAGAC
*
23620282 ATTTCTTACACTAGCTCTCGCCTCAAT
66 ATGTCTTACACTAGCTCTCGCCTCAAT
* * *
23620309 GCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-TATAATGTGGCCGATGCATGTCCCA
1 GCCAATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATAATGAGGCCAATGCATGTCCCA
23620373 GACATGTCTTACACTAG
63 GACATGTCTTACACTAG
23620390 TGCACAGATG
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
92 7 0.10
93 14 0.20
94 49 0.69
95 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (92 bp):
GCCAATGCATGTCCCAGACATGTCTTACACTGGCTTACATAATGAGGCCAATGCATGTCCCAGAC
ATGTCTTACACTAGCTCTCGCCTCAAT
Found at i:23627984 original size:43 final size:42
Alignment explanation
Indices: 23627923--23628021 Score: 153
Period size: 42 Copynumber: 2.3 Consensus size: 42
23627913 GAGCTCGTTG
*
23627923 AGTGGTCCGAGTTCGTGATATATGTGAGAATTTGAACTTGTTA
1 AGTGGTCCGAGTTCGTGATATATGT-AGAATCTGAACTTGTTA
* * *
23627966 AGTGGTCCAAGTTCGTGATATATGTAGCATCTGAGCTTGTTA
1 AGTGGTCCGAGTTCGTGATATATGTAGAATCTGAACTTGTTA
23628008 AGTGGTCCGAGTTC
1 AGTGGTCCGAGTTC
23628022 ATTATGGATG
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 27 0.53
43 24 0.47
ACGTcount: A:0.23, C:0.13, G:0.28, T:0.35
Consensus pattern (42 bp):
AGTGGTCCGAGTTCGTGATATATGTAGAATCTGAACTTGTTA
Found at i:23628021 original size:42 final size:43
Alignment explanation
Indices: 23627908--23628021 Score: 158
Period size: 43 Copynumber: 2.7 Consensus size: 43
23627898 GGAATTAAGA
* * *
23627908 AATCCGAGCTCGTTGAGTGGTCCGAGTTCGTGATATATGTGAG
1 AATCTGAGCTTGTTAAGTGGTCCGAGTTCGTGATATATGTGAG
* * *
23627951 AATTTGAACTTGTTAAGTGGTCCAAGTTCGTGATATATGT-AG
1 AATCTGAGCTTGTTAAGTGGTCCGAGTTCGTGATATATGTGAG
*
23627993 CATCTGAGCTTGTTAAGTGGTCCGAGTTC
1 AATCTGAGCTTGTTAAGTGGTCCGAGTTC
23628022 ATTATGGATG
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 27 0.44
43 34 0.56
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (43 bp):
AATCTGAGCTTGTTAAGTGGTCCGAGTTCGTGATATATGTGAG
Found at i:23628055 original size:43 final size:43
Alignment explanation
Indices: 23627962--23628075 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 43
23627952 ATTTGAACTT
* * * * * *
23627962 GTTAAGTGGTCCAAGTTCGTGATATATG-TAGCATCTGAGCTT
1 GTTAAGTGGTCCAAGTTCATAATAGATGCAAGCATCCGAGCTC
* * *
23628004 GTTAAGTGGTCCGAGTTCATTATGGATGCAAGCATCCGAGCTC
1 GTTAAGTGGTCCAAGTTCATAATAGATGCAAGCATCCGAGCTC
* *
23628047 GTTGAGTGGTCTAAGTTCATAATAGATGC
1 GTTAAGTGGTCCAAGTTCATAATAGATGC
23628076 GATACATGTA
Statistics
Matches: 58, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
42 23 0.40
43 35 0.60
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (43 bp):
GTTAAGTGGTCCAAGTTCATAATAGATGCAAGCATCCGAGCTC
Found at i:23630471 original size:15 final size:14
Alignment explanation
Indices: 23630449--23630512 Score: 74
Period size: 15 Copynumber: 4.3 Consensus size: 14
23630439 GTATCGTATA
23630449 TTGGATTTTTGTATC
1 TTGGATTTTT-TATC
*
23630464 TTGAATTTCTTTATC
1 TTGGATTT-TTTATC
23630479 TTGGATTTTTCTATC
1 TTGGATTTTT-TATC
*
23630494 TTGGATTTCTTTATT
1 TTGGATTT-TTTATC
23630509 TTGG
1 TTGG
23630513 TCTTCTAGTC
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
14 2 0.05
15 37 0.86
16 4 0.09
ACGTcount: A:0.14, C:0.09, G:0.16, T:0.61
Consensus pattern (14 bp):
TTGGATTTTTTATC
Found at i:23630485 original size:30 final size:30
Alignment explanation
Indices: 23630449--23630512 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
23630439 GTATCGTATA
*
23630449 TTGGATTTTTGTATCTTGAATTTCTTTATC
1 TTGGATTTTTCTATCTTGAATTTCTTTATC
* *
23630479 TTGGATTTTTCTATCTTGGATTTCTTTATT
1 TTGGATTTTTCTATCTTGAATTTCTTTATC
23630509 TTGG
1 TTGG
23630513 TCTTCTAGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.14, C:0.09, G:0.16, T:0.61
Consensus pattern (30 bp):
TTGGATTTTTCTATCTTGAATTTCTTTATC
Found at i:23633698 original size:43 final size:43
Alignment explanation
Indices: 23633617--23633698 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
23633607 TGATATATGT
* * **
23633617 AGCATCCGAGCTCATTGAGTGGTCTGAGTTCATTATGGAGGCA
1 AGCATCCAAGCTCATTGAGTGATCTGAGTTCACAATGGAGGCA
*
23633660 AGCATCCAAGCTCGTTGAGTGATCTGAGTTCACAATGGA
1 AGCATCCAAGCTCATTGAGTGATCTGAGTTCACAATGGA
23633699 TGCGATACAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (43 bp):
AGCATCCAAGCTCATTGAGTGATCTGAGTTCACAATGGAGGCA
Found at i:23634809 original size:19 final size:19
Alignment explanation
Indices: 23634766--23634803 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
23634756 ATGTTGTTGA
*
23634766 CATGTTGTTTACTTCGACT
1 CATGCTGTTTACTTCGACT
*
23634785 CATGCTGTTTACTTGGACT
1 CATGCTGTTTACTTCGACT
23634804 TTTGCTTATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.16, C:0.21, G:0.18, T:0.45
Consensus pattern (19 bp):
CATGCTGTTTACTTCGACT
Found at i:23640217 original size:29 final size:28
Alignment explanation
Indices: 23640134--23640219 Score: 82
Period size: 33 Copynumber: 2.9 Consensus size: 28
23640124 AACATAGTGT
*
23640134 CAGTACAATATGGGCCAAAGCCCTATTCAGTAA
1 CAGTACAATATGGGCCTAAGCCC--TT---TAA
* * *
23640167 CAGTACAGTCTGGGCCTTAGCCCTTTAA
1 CAGTACAATATGGGCCTAAGCCCTTTAA
23640195 CAGTAGCAATATGGGCCTAAGCCCT
1 CAGTA-CAATATGGGCCTAAGCCCT
23640220 AATTCAGTCT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
28 8 0.18
29 16 0.36
31 2 0.04
33 19 0.42
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (28 bp):
CAGTACAATATGGGCCTAAGCCCTTTAA
Found at i:23640309 original size:30 final size:31
Alignment explanation
Indices: 23640233--23640315 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
23640223 TCAGTCTCGA
* *
23640233 CATAT-ACTGGGCCGAAGCTTTTTCACAAAT
1 CATATCACTGGGCCGAAGCCTTTTCACAAAG
*
23640263 CATATCACTGGGCCGAAGCCTTTTCATAAAG
1 CATATCACTGGGCCGAAGCCTTTTCACAAAG
23640294 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
23640316 ACTGCAAGCA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 18 0.37
31 31 0.63
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCACAAAG
Found at i:23640549 original size:24 final size:24
Alignment explanation
Indices: 23640522--23640605 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
23640512 TTGGAGGCCT
23640522 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
23640546 AGCCCTTTTTGATAAACTGGGGCAA
1 AGCCC-TTTTAATAAACTGGGGCAA
** *
23640571 AGCCCTTTTGGGTAAACTGGGGCAT
1 AGCCCTTTT-AATAAACTGGGGCAA
23640596 AGCCCTTTTA
1 AGCCCTTTTA
23640606 GCACTTCTTC
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
23 1 0.02
24 14 0.26
25 38 0.72
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:23640569 original size:25 final size:25
Alignment explanation
Indices: 23640535--23640604 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
23640525 CTCTTTTAAT
*
23640535 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTGGATA
*
23640560 AACTGGGGCAAAGCCCTTTTGGGTA
1 AACTGGGGCAAAGCCCTTTTGGATA
*
23640585 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
23640605 AGCACTTCTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTGGATA
Found at i:23641476 original size:27 final size:27
Alignment explanation
Indices: 23641414--23641491 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
23641404 GGGCATATTC
* *
23641414 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
*
23641441 GTCACTTTACCCTATAGGGGCT-TTACG
1 GTCATTTTACCCTATAGGGG-TATTACG
*
23641468 GTCTTTTTA-CCTATTAGGGGTATT
1 GTCATTTTACCCTA-TAGGGGTATT
23641492 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 5 0.12
27 37 0.86
28 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTACG
Found at i:23641562 original size:27 final size:26
Alignment explanation
Indices: 23641532--23641691 Score: 99
Period size: 27 Copynumber: 5.9 Consensus size: 26
23641522 GTAAATCTAC
23641532 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTT-T
*
23641559 AAACCAATGGTATTTCTA-TAATTTTT
1 AAACCAAGGGTATTTC-AGTAATTTTT
* * *
23641585 AGAAAGTCAAGGGTGTTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTT-T
* * ** *
23641615 AAATCAGGGGTATTTTGGTAATTTTA
1 AAACCAAGGGTATTTCAGTAATTTTT
*** **
23641641 AAATTGAGGGTATTTCAGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTT-TT
*
23641668 AAACC-AGTGGTATTTCGGTAATTT
1 AAACCAAG-GGTATTTCAGTAATTT
23641692 GACAAACTAG
Statistics
Matches: 105, Mismatches: 20, Indels: 16
0.74 0.14 0.11
Matches are distributed among these distances:
26 22 0.21
27 58 0.55
28 7 0.07
29 17 0.16
30 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (26 bp):
AAACCAAGGGTATTTCAGTAATTTTT
Found at i:23641696 original size:27 final size:27
Alignment explanation
Indices: 23641620--23641803 Score: 205
Period size: 27 Copynumber: 6.9 Consensus size: 27
23641610 TTTGTAAATC
23641620 AGGGGTATTTTGGTAATTTTA-AAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* ** * *
23641645 TGAGGGTATTTCAGTAATTTCACAAACC
1 AG-GGGTATTTTGGTAATTTTACAAACT
* * *
23641673 AGTGGTATTTCGGTAATTTGACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
23641700 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
23641727 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
* **
23641754 A-GGGTATTTTGGTAATTCTATCCTAC-
1 AGGGGTATTTTGGTAATTTTA-CAAACT
* *
23641780 AGGGGTATTTTAGTAATTTCACAA
1 AGGGGTATTTTGGTAATTTTACAA
23641804 TCGAGGGTAA
Statistics
Matches: 133, Mismatches: 21, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
25 1 0.01
26 36 0.27
27 95 0.71
28 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:23641784 original size:53 final size:51
Alignment explanation
Indices: 23641619--23641812 Score: 201
Period size: 53 Copynumber: 3.7 Consensus size: 51
23641609 TTTTGTAAAT
* **
23641619 CAGGGGTATTTTGGTAATTTTA-AAATTGAGGGTATTTCAGTAATTTCACAAA
1 CAGGGGTATTTTGGTAATTTTACAAACT-AGGGTATTTTGGTAATTT-ACAAA
* * *
23641671 CCAGTGGTATTTCGGTAATTTGACAAACTAGGGGTATTTTGGTAATTTTACAAA
1 -CAGGGGTATTTTGGTAATTTTACAAACTA-GGGTATTTTGGTAA-TTTACAAA
**
23641725 CTAGGGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTCTATCCTA
1 C-AGGGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATT-TA-CAAA
* * * *
23641779 CAGGGGTATTTTAGTAATTTCACAATCGAGGGTA
1 CAGGGGTATTTTGGTAATTTTACAAACTAGGGTA
23641813 AAAGGGTAAT
Statistics
Matches: 120, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
52 2 0.02
53 66 0.55
54 49 0.41
55 3 0.03
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.38
Consensus pattern (51 bp):
CAGGGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTTACAAA
Found at i:23641784 original size:80 final size:80
Alignment explanation
Indices: 23641619--23641812 Score: 218
Period size: 80 Copynumber: 2.4 Consensus size: 80
23641609 TTTTGTAAAT
*
23641619 CAGGGGTATTTTGGTAATTTTA-AAATTGAGGGTATTTCAGTAATTTCACAAACCAGTGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCAGTAATTTCACAAACCAGTGGTATTT
23641683 CGGTAATTTGACAAA
66 CGGTAATTTGACAAA
** * *
23641698 CTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAACTAG-GGTAT
1 C-AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCAGTAATTTCACAAACCAGTGGTAT
* **
23641761 TTTGGTAATTCT-ATCCTA
64 TTCGGTAATT-TGA-CAAA
* * *
23641779 CAGGGGTATTTTAGTAATTTCAC-AATCGAGGGTA
1 CAGGGGTATTTTGGTAATTTTACAAATAGAGGGTA
23641813 AAAGGGTAAT
Statistics
Matches: 98, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
78 2 0.02
79 8 0.08
80 56 0.57
81 30 0.31
82 2 0.02
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.38
Consensus pattern (80 bp):
CAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCAGTAATTTCACAAACCAGTGGTATTT
CGGTAATTTGACAAA
Found at i:23641836 original size:27 final size:27
Alignment explanation
Indices: 23641802--23641977 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 27
23641792 GTAATTTCAC
*
23641802 AATCGAGGGTAAAAGGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
23641829 AA-CTGAGGG-ATTAATGGTAATTTTGTA
1 AATC-GAGGGTA-AAACGGTAATTTTGTA
* * *
23641856 AATCGAGGGTAATACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
23641883 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
23641910 AATTGAGGGTAAAACAGTAATTTTGTT
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * *
23641937 AATCGAGGGTGAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
23641964 AATCAAGGGTAAAA
1 AATCGAGGGTAAAA
23641978 TAGTAATTCT
Statistics
Matches: 121, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
26 2 0.02
27 117 0.97
28 2 0.02
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:23641877 original size:54 final size:54
Alignment explanation
Indices: 23641802--23641977 Score: 187
Period size: 54 Copynumber: 3.3 Consensus size: 54
23641792 GTAATTTCAC
* * * * *
23641802 AATCGAGGGTAAAAGGGTAATTTTGTAAA-CTGAGGG-ATTAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGATAATTTTGTAAATC-GAGGGTA-AAATGGTAATTCTATA
* *
23641856 AATCGAGGGTAATACGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
* * * **
23641910 AATTGAGGGTAAAAC-AGTAATTTTGTTAATCGAGGGTGAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGA-TAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
*
23641964 AATCAAGGGTAAAA
1 AATCGAGGGTAAAA
23641978 TAGTAATTCT
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 1 0.01
54 100 0.97
55 2 0.02
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (54 bp):
AATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
Found at i:23641902 original size:81 final size:81
Alignment explanation
Indices: 23641802--23641988 Score: 227
Period size: 81 Copynumber: 2.3 Consensus size: 81
23641792 GTAATTTCAC
* * * * **
23641802 AATCGAGGGTAAAAGGGTAATTTTGTAAACTGAGGG-ATTAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTA-AAACAGTAATTTTGTAAATCGAGGGT
*
23641866 -AATAC-GATAATTCTGTA
65 GAA-ACAG-TAATTCTATA
* *
23641883 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACAGTAATTTTGTTAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTG
23641948 AAACAGTAATTCTATA
66 AAACAGTAATTCTATA
* *
23641964 AATCAAGGGTAAAATAGTAATTCTA
1 AATCGAGGGTAAAATGGTAATTCTA
23641989 CAAATCGAGG
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
81 88 0.96
82 4 0.04
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTG
AAACAGTAATTCTATA
Found at i:23641982 original size:27 final size:27
Alignment explanation
Indices: 23641845--23641999 Score: 168
Period size: 27 Copynumber: 5.7 Consensus size: 27
23641835 GGGATTAATG
* * *
23641845 GTAATTTTGTAAATCGAGGGTAATAC-
1 GTAATTCTATAAATCGAGGGTAAAACA
* **
23641871 GATAATTCTGTAAATCGAGGGTAAAATG
1 G-TAATTCTATAAATCGAGGGTAAAACA
*
23641899 GTAATTCTATAAATTGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACA
* * * *
23641926 GTAATTTTGTTAATCGAGGGTGAAACA
1 GTAATTCTATAAATCGAGGGTAAAACA
* *
23641953 GTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACA
*
23641980 GTAATTCTACAAATCGAGGG
1 GTAATTCTATAAATCGAGGG
23642000 CATTTCAGTA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 105 0.98
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACA
Found at i:23642009 original size:81 final size:81
Alignment explanation
Indices: 23641845--23642019 Score: 219
Period size: 81 Copynumber: 2.2 Consensus size: 81
23641835 GGGATTAATG
* * * *
23641845 GTAATTTTGTAAATCGAGGGTAATACGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAATACGATAATTCTATAAATCAAGGGTAAAATAGTAATTCTACA
* *
23641910 AATTGAGGGTAAAACA
66 AATCGAGGGCAAAACA
*
23641926 GTAATTTTGTTAATCGAGGGTGAA-AC-AGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTA
1 GTAATTTTGTAAATCGAGGGT-AATACGA-TAATTCTATAAATCAAGGGTAAAATAGTAATTCTA
***
23641989 CAAATCGAGGGCATTTCA
64 CAAATCGAGGGCAAAACA
*
23642007 GTAATTTAGTAAA
1 GTAATTTTGTAAA
23642020 CTAAAGTATT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
80 1 0.01
81 77 0.96
82 2 0.03
ACGTcount: A:0.39, C:0.09, G:0.21, T:0.31
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAATACGATAATTCTATAAATCAAGGGTAAAATAGTAATTCTACA
AATCGAGGGCAAAACA
Found at i:23644246 original size:28 final size:29
Alignment explanation
Indices: 23644213--23644268 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
23644203 CCTTATTCAA
* * *
23644213 TAACAGTA-CAGTCTGGGCCTTAGCCCTT
1 TAACAGTAGCAATATGGGCCTAAGCCCTT
23644241 TAACAGTAGCAATATGGGCCTAAGCCCT
1 TAACAGTAGCAATATGGGCCTAAGCCCT
23644269 AATTCAGTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (29 bp):
TAACAGTAGCAATATGGGCCTAAGCCCTT
Found at i:23644358 original size:30 final size:31
Alignment explanation
Indices: 23644282--23644364 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
23644272 TCAGTCTCGA
* *
23644282 CATAT-ACTGGGCCAAAGCTTTTTCATAAAC
1 CATATCACTGGGCCGAAGCCTTTTCATAAAC
*
23644312 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAC
23644343 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
23644365 ACTGTAAGCA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 18 0.37
31 31 0.63
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAC
Found at i:23644598 original size:24 final size:24
Alignment explanation
Indices: 23644557--23644628 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
23644547 GCTTTATCAT
**
23644557 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACT-GAGGCAAAGCCTCTTTTA
*
23644582 ATAACTGAGGCAAAGCC-CTTTTTG
1 ATAACTGAGGCAAAGCCTC-TTTTA
*
23644606 ATAAACTGGGGCAAAGCCT-TTTT
1 AT-AACTGAGGCAAAGCCTCTTTT
23644629 GGGTAAACTG
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
23 1 0.03
24 19 0.47
25 20 0.50
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (24 bp):
ATAACTGAGGCAAAGCCTCTTTTA
Found at i:23644612 original size:25 final size:26
Alignment explanation
Indices: 23644584--23644653 Score: 99
Period size: 25 Copynumber: 2.8 Consensus size: 26
23644574 CTCTTTTAAT
*
23644584 AACTGAGGCAAAGCCCTTTTT-GATA
1 AACTGGGGCAAAGCCCTTTTTGGATA
*
23644609 AACTGGGGCAAAG-CCTTTTTGGGTA
1 AACTGGGGCAAAGCCCTTTTTGGATA
*
23644634 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
23644654 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
24 7 0.17
25 27 0.68
26 6 0.15
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (26 bp):
AACTGGGGCAAAGCCCTTTTTGGATA
Found at i:23644629 original size:24 final size:24
Alignment explanation
Indices: 23644571--23644653 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 24
23644561 CTGGAGGCCT
* *
23644571 AGCCTCTTTTAAT-AACTGAGGCAA
1 AGCCT-TTTTGATAAACTGGGGCAA
23644595 AGCCCTTTTTGATAAACTGGGGCAA
1 AG-CCTTTTTGATAAACTGGGGCAA
* *
23644620 AGCCTTTTTGGGTAAACTGGGGCAT
1 AGCCTTTTT-GATAAACTGGGGCAA
*
23644645 AGCCCTTTT
1 AGCCTTTTT
23644654 AGCACTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
24 15 0.29
25 36 0.71
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.31
Consensus pattern (24 bp):
AGCCTTTTTGATAAACTGGGGCAA
Found at i:23645600 original size:27 final size:27
Alignment explanation
Indices: 23645570--23645622 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
23645560 GGGTGTTTTG
23645570 GTAAATCTACAAACCAAGGGTATTTCA
1 GTAAATCTACAAACCAAGGGTATTTCA
* ** *
23645597 GTAAATTTGTAAACCAATGGTATTTC
1 GTAAATCTACAAACCAAGGGTATTTC
23645623 TATAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (27 bp):
GTAAATCTACAAACCAAGGGTATTTCA
Found at i:23645683 original size:27 final size:27
Alignment explanation
Indices: 23645668--23645853 Score: 214
Period size: 27 Copynumber: 6.9 Consensus size: 27
23645658 TTTGTAAATC
*
23645668 AGGGGTATTTTGGTAATTTTA-AAAAT
1 AGGGGTATTTTGGTAATTTTACAAACT
* ** * *
23645694 TGAGGGTATTTCAGTAATTTCACAAACC
1 AG-GGGTATTTTGGTAATTTTACAAACT
* * *
23645722 AGTGGTATTTCGGTAATTTGACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
23645749 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
23645776 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
* **
23645803 AGGGGTATTTTGGTAATTCTATCCTAC-
1 AGGGGTATTTTGGTAATTTTA-CAAACT
* *
23645830 AGGGGTATTTTAGTAATTTCACAA
1 AGGGGTATTTTGGTAATTTTACAA
23645854 TCGAGGGTAA
Statistics
Matches: 135, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
26 2 0.01
27 126 0.93
28 7 0.05
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:23645886 original size:27 final size:27
Alignment explanation
Indices: 23645852--23646027 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 27
23645842 GTAATTTCAC
*
23645852 AATCGAGGGTAAAAGGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
23645879 AA-CTGAGGG-ATTAATGGTAATTTTGTA
1 AATC-GAGGGTA-AAACGGTAATTTTGTA
* * * *
23645906 AATCAAGGGTAATACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
23645933 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
23645960 AATTGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * *
23645987 AATCGAGGGTGAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
23646014 AATCAAGGGTAAAA
1 AATCGAGGGTAAAA
23646028 TAGTAATTCT
Statistics
Matches: 121, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
26 2 0.02
27 117 0.97
28 2 0.02
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:23645927 original size:54 final size:54
Alignment explanation
Indices: 23645852--23646049 Score: 195
Period size: 54 Copynumber: 3.7 Consensus size: 54
23645842 GTAATTTCAC
* ** * * *
23645852 AATCGAGGGTAAAAGGGTAATTTTGTAAA-CTGAGGG-ATTAATGGTAATTTTGTA
1 AATCAAGGGTAAAACAGTAATTTTGTAAATC-GAGGGTA-AAATGGTAATTCTATA
* *
23645906 AATCAAGGGTAATAC-GATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCAAGGGTAAAACAG-TAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
** * **
23645960 AATTGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTGAAACAGTAATTCTATA
1 AATCAAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
* * **
23646014 AATCAAGGGTAAAATAGTAATTCTACAAATCGAGGG
1 AATCAAGGGTAAAACAGTAATTTTGTAAATCGAGGG
23646050 CATTTCAGTA
Statistics
Matches: 120, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
53 1 0.01
54 116 0.97
55 3 0.03
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (54 bp):
AATCAAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
Found at i:23645967 original size:81 final size:81
Alignment explanation
Indices: 23645852--23646049 Score: 231
Period size: 81 Copynumber: 2.4 Consensus size: 81
23645842 GTAATTTCAC
* * * * * **
23645852 AATCGAGGGTAAAAGGGTAATTTTGTAAACTGAGGG-ATTAATGGTAATTTTGTAAATCAAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTA-AAACAGTAATTTTGTAAATCAAGGGT
*
23645916 -AATAC-GATAATTCTGTA
65 GAA-ACAG-TAATTCTATA
*
23645933 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACAGTAATTTTGTAAATCAAGGGTG
23645998 AAACAGTAATTCTATA
66 AAACAGTAATTCTATA
* * * *
23646014 AATCAAGGGTAAAATAGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGG
23646050 CATTTCAGTA
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
81 97 0.96
82 4 0.04
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACAGTAATTTTGTAAATCAAGGGTG
AAACAGTAATTCTATA
Found at i:23646032 original size:27 final size:27
Alignment explanation
Indices: 23645923--23646049 Score: 164
Period size: 27 Copynumber: 4.7 Consensus size: 27
23645913 GGTAATACGA
* *
23645923 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTATAAATCGAGGGTAAAATAG
* *
23645950 TAATTCTATAAATTGAGGGTAAAACAG
1 TAATTCTATAAATCGAGGGTAAAATAG
* * * *
23645977 TAATTTTGTAAATCGAGGGTGAAACAG
1 TAATTCTATAAATCGAGGGTAAAATAG
*
23646004 TAATTCTATAAATCAAGGGTAAAATAG
1 TAATTCTATAAATCGAGGGTAAAATAG
*
23646031 TAATTCTACAAATCGAGGG
1 TAATTCTATAAATCGAGGG
23646050 CATTTCAGTA
Statistics
Matches: 85, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
TAATTCTATAAATCGAGGGTAAAATAG
Found at i:23646059 original size:81 final size:81
Alignment explanation
Indices: 23645895--23646069 Score: 219
Period size: 81 Copynumber: 2.2 Consensus size: 81
23645885 GGGATTAATG
* * * *
23645895 GTAATTTTGTAAATCAAGGGTAATACGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTTTGTAAATCAAGGGTAATACGATAATTCTATAAATCAAGGGTAAAATAGTAATTCTACA
* *
23645960 AATTGAGGGTAAAACA
66 AATCGAGGGCAAAACA
*
23645976 GTAATTTTGTAAATCGAGGGTGAA-AC-AGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTA
1 GTAATTTTGTAAATCAAGGGT-AATACGA-TAATTCTATAAATCAAGGGTAAAATAGTAATTCTA
***
23646039 CAAATCGAGGGCATTTCA
64 CAAATCGAGGGCAAAACA
*
23646057 GTAATTTAGTAAA
1 GTAATTTTGTAAA
23646070 CTAAAGTATT
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
80 1 0.01
81 78 0.96
82 2 0.02
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.31
Consensus pattern (81 bp):
GTAATTTTGTAAATCAAGGGTAATACGATAATTCTATAAATCAAGGGTAAAATAGTAATTCTACA
AATCGAGGGCAAAACA
Found at i:23648775 original size:37 final size:37
Alignment explanation
Indices: 23648716--23648861 Score: 222
Period size: 37 Copynumber: 3.9 Consensus size: 37
23648706 AGCTCAGATG
* *
23648716 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
23648753 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA-A
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
23648789 TATATTTCCACACGTAGTCATTGGGTCTTACCCGGACA
1 -AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
23648827 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
23648862 ATATATTTCC
Statistics
Matches: 98, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
36 1 0.01
37 96 0.98
38 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:23648817 original size:74 final size:74
Alignment explanation
Indices: 23648721--23648872 Score: 268
Period size: 74 Copynumber: 2.1 Consensus size: 74
23648711 AGATGAAATC
*
23648721 TCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 TCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
23648786 GAATATATT
66 GAATATATT
* * *
23648795 TCCACACGTAGTCATTGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 TCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
23648860 GAATATATT
66 GAATATATT
23648869 TCCA
1 TCCA
23648873 AGTTTCATGT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (74 bp):
TCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
GAATATATT
Found at i:23649061 original size:48 final size:48
Alignment explanation
Indices: 23649008--23649247 Score: 365
Period size: 48 Copynumber: 5.0 Consensus size: 48
23648998 CCACACCTCC
* * * *
23649008 TACATACTTCACACTAGCTC-TTCAGCTTTACCACATATACGTATCTCA
1 TACATATTTCACATTAGC-CATTCGGCTTTACCACATATACATATCTCA
*
23649056 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* ** *
23649106 TATATATTTCACATTAGCCATTCAACTTTACCACATATACATATCCCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
23649154 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
23649202 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
23649248 TTATCTTGTG
Statistics
Matches: 177, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
47 1 0.01
48 133 0.75
50 43 0.24
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:23649135 original size:98 final size:96
Alignment explanation
Indices: 23649008--23649247 Score: 374
Period size: 98 Copynumber: 2.5 Consensus size: 96
23648998 CCACACCTCC
* * *
23649008 TACATACTTCACACTAGCTC-TTCAGCTTTACCACATATACGTATCTCATACATATTTCACACTA
1 TACATATTTCACATTAGC-CATTCAGCTTTACCACATATACATATCTCATACATATTTCACACTA
23649072 GCCATTCGGCTTTACCACATATACATATCTCATA
65 GCCATTCGGCTTTACCACATATACATATCTC--A
* * * *
23649106 TATATATTTCACATTAGCCATTCAACTTTACCACATATACATATCCCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACACTAG
23649171 CCATTCGGCTTTACCACATATACATATCTCA
66 CCATTCGGCTTTACCACATATACATATCTCA
*
23649202 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCT
23649248 TTATCTTGTG
Statistics
Matches: 130, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
96 43 0.33
97 1 0.01
98 86 0.66
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (96 bp):
TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACACTAG
CCATTCGGCTTTACCACATATACATATCTCA
Found at i:23653648 original size:43 final size:44
Alignment explanation
Indices: 23653593--23653748 Score: 130
Period size: 41 Copynumber: 3.6 Consensus size: 44
23653583 TATATCCAAA
* **
23653593 ATGCCAAC-GTCCCAGACGTGGTCTTACATGC-TATCTTATATCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACATGCAAATCAAATA-CG
*
23653636 ATGCC-ACTGTCCCAAACGTGGTCTTACA--CAAATCAAATACG
1 ATGCCAACTGTCCCAGACGTGGTCTTACATGCAAATCAAATACG
* * * *
23653677 ATGCCGA-TGTCCCAGACATGGTCTTACATGTAACCA-CATATATCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACATGCAA--ATCAAATA-CG
* *
23653722 ATGCCAAC-GTCCCAGACTTGTTCTTAC
1 ATGCCAACTGTCCCAGACGTGGTCTTAC
23653749 TCGAAAACAC
Statistics
Matches: 93, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
41 27 0.29
42 9 0.10
43 26 0.28
44 5 0.05
45 26 0.28
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.27
Consensus pattern (44 bp):
ATGCCAACTGTCCCAGACGTGGTCTTACATGCAAATCAAATACG
Found at i:23653760 original size:45 final size:44
Alignment explanation
Indices: 23653629--23653764 Score: 120
Period size: 45 Copynumber: 3.1 Consensus size: 44
23653619 CATGCTATCT
* * * *
23653629 TATATCGATGCCACTGTCCCAAACGTGGTCTTACAC-AAATCA-A
1 TATATCGATGCCAC-GTCCCAGACATGGTCTTACTCGAAAACACA
* * *
23653672 -ATA-CGATGCCGATGTCCCAGACATGGTCTTACAT-GTAACCACA
1 TATATCGATGCC-ACGTCCCAGACATGGTCTTAC-TCGAAAACACA
* *
23653715 TATATCGATGCCAACGTCCCAGACTTGTTCTTACTCGAAAACACA
1 TATATCGATGCC-ACGTCCCAGACATGGTCTTACTCGAAAACACA
23653760 TATAT
1 TATAT
23653765 TAGAATCCTA
Statistics
Matches: 74, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
41 24 0.32
42 8 0.11
43 1 0.01
44 4 0.05
45 37 0.50
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (44 bp):
TATATCGATGCCACGTCCCAGACATGGTCTTACTCGAAAACACA
Found at i:23656395 original size:24 final size:24
Alignment explanation
Indices: 23656363--23656569 Score: 342
Period size: 24 Copynumber: 8.6 Consensus size: 24
23656353 TATCTCAAAT
*
23656363 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
23656387 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
23656411 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
23656435 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
23656459 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
23656483 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
23656507 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
23656531 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
23656555 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
23656570 ACATAATAAG
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:23664134 original size:24 final size:24
Alignment explanation
Indices: 23664102--23664277 Score: 258
Period size: 24 Copynumber: 7.6 Consensus size: 24
23664092 TATCTCAAAT
*
23664102 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
23664126 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
23664150 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
23664174 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
23664198 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
23664222 GCACTATGTGTGC----TA-TA--
1 GCACTATGTGTGCGATTTACTATG
* *
23664239 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
23664263 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
23664278 ACATAATAAG
Statistics
Matches: 140, Mismatches: 5, Indels: 14
0.88 0.03 0.09
Matches are distributed among these distances:
17 13 0.09
19 2 0.01
20 2 0.01
21 1 0.01
22 2 0.01
24 120 0.86
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:23664178 original size:72 final size:65
Alignment explanation
Indices: 23664129--23664277 Score: 208
Period size: 65 Copynumber: 2.2 Consensus size: 65
23664119 CACTATGGCA
23664129 CTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTAC
1 CTATGTGTGCGATTTACTATGGCACTATGTGTGC---T-A-TA--GCACTATGTGTGCGATTTAC
23664194 TATGGCA
59 TATGGCA
* * *
23664201 CTATGTGTGCGATTTACTATGGCACTATGTGTGCTATAGCACTATGTGTGCGATTTGCTATAGCT
1 CTATGTGTGCGATTTACTATGGCACTATGTGTGCTATAGCACTATGTGTGCGATTTACTATGGCA
23664266 CTATGTGTGCGA
1 CTATGTGTGCGA
23664278 ACATAATAAG
Statistics
Matches: 74, Mismatches: 3, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
65 36 0.49
67 2 0.03
68 1 0.01
69 1 0.01
72 34 0.46
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.37
Consensus pattern (65 bp):
CTATGTGTGCGATTTACTATGGCACTATGTGTGCTATAGCACTATGTGTGCGATTTACTATGGCA
Found at i:23664242 original size:17 final size:17
Alignment explanation
Indices: 23664217--23664251 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
23664207 GTGCGATTTA
*
23664217 CTATGGCACTATGTGTG
1 CTATAGCACTATGTGTG
23664234 CTATAGCACTATGTGTG
1 CTATAGCACTATGTGTG
23664251 C
1 C
23664252 GATTTGCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (17 bp):
CTATAGCACTATGTGTG
Found at i:23664244 original size:41 final size:41
Alignment explanation
Indices: 23664193--23664275 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
23664183 GTGCGATTTA
* *
23664193 CTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTG
1 CTATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTG
* *
23664234 CTATAGCACTATGTGTGCGATTTGCTATAGCTCTATGTGTG
1 CTATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTG
23664275 C
1 C
23664276 GAACATAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.37
Consensus pattern (41 bp):
CTATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTG
Found at i:23664291 original size:65 final size:65
Alignment explanation
Indices: 23664169--23664299 Score: 174
Period size: 65 Copynumber: 2.0 Consensus size: 65
23664159 GTGCGATTCA
* * ** * *
23664169 CTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTG
1 CTATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGACATAATATAGCACTATGTGTG
* *
23664234 CTATAGCACTATGTGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATA-AGCACTATGTGT
1 CTATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCG-ACATAATATAGCACTATGTGT
23664298 G
65 G
23664299 C
1 C
23664300 CACATTCGGT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
65 52 0.91
66 5 0.09
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (65 bp):
CTATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGACATAATATAGCACTATGTGTG
Found at i:23672728 original size:24 final size:24
Alignment explanation
Indices: 23672696--23672871 Score: 258
Period size: 24 Copynumber: 7.6 Consensus size: 24
23672686 TATCTCAAAT
*
23672696 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
23672720 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
23672744 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
23672768 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
23672792 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
23672816 GCACTATGTGTGC----TA-TA--
1 GCACTATGTGTGCGATTTACTATG
* *
23672833 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
23672857 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
23672872 ACATAATAAG
Statistics
Matches: 140, Mismatches: 5, Indels: 14
0.88 0.03 0.09
Matches are distributed among these distances:
17 13 0.09
19 2 0.01
20 2 0.01
21 1 0.01
22 2 0.01
24 120 0.86
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:23672772 original size:72 final size:65
Alignment explanation
Indices: 23672723--23672871 Score: 208
Period size: 65 Copynumber: 2.2 Consensus size: 65
23672713 CACTATGGCA
23672723 CTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTAC
1 CTATGTGTGCGATTTACTATGGCACTATGTGTGC---T-A-TA--GCACTATGTGTGCGATTTAC
23672788 TATGGCA
59 TATGGCA
* * *
23672795 CTATGTGTGCGATTTACTATGGCACTATGTGTGCTATAGCACTATGTGTGCGATTTGCTATAGCT
1 CTATGTGTGCGATTTACTATGGCACTATGTGTGCTATAGCACTATGTGTGCGATTTACTATGGCA
23672860 CTATGTGTGCGA
1 CTATGTGTGCGA
23672872 ACATAATAAG
Statistics
Matches: 74, Mismatches: 3, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
65 36 0.49
67 2 0.03
68 1 0.01
69 1 0.01
72 34 0.46
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.37
Consensus pattern (65 bp):
CTATGTGTGCGATTTACTATGGCACTATGTGTGCTATAGCACTATGTGTGCGATTTACTATGGCA
Found at i:23672836 original size:17 final size:17
Alignment explanation
Indices: 23672811--23672845 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
23672801 GTGCGATTTA
*
23672811 CTATGGCACTATGTGTG
1 CTATAGCACTATGTGTG
23672828 CTATAGCACTATGTGTG
1 CTATAGCACTATGTGTG
23672845 C
1 C
23672846 GATTTGCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (17 bp):
CTATAGCACTATGTGTG
Found at i:23672838 original size:41 final size:41
Alignment explanation
Indices: 23672787--23672869 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
23672777 GTGCGATTTA
* *
23672787 CTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTG
1 CTATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTG
* *
23672828 CTATAGCACTATGTGTGCGATTTGCTATAGCTCTATGTGTG
1 CTATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTG
23672869 C
1 C
23672870 GAACATAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.37
Consensus pattern (41 bp):
CTATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTG
Found at i:23672885 original size:65 final size:65
Alignment explanation
Indices: 23672763--23672893 Score: 174
Period size: 65 Copynumber: 2.0 Consensus size: 65
23672753 GTGCGATTCA
* * ** * *
23672763 CTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTG
1 CTATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGACATAATATAGCACTATGTGTG
* *
23672828 CTATAGCACTATGTGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATA-AGCACTATGTGT
1 CTATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCG-ACATAATATAGCACTATGTGT
23672892 G
65 G
23672893 C
1 C
23672894 CACATTCGGT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
65 52 0.91
66 5 0.09
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (65 bp):
CTATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGACATAATATAGCACTATGTGTG
Found at i:23681304 original size:40 final size:40
Alignment explanation
Indices: 23681223--23681407 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
23681213 TCGAATGATG
* * *
23681223 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
23681262 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
23681302 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
23681342 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
23681383 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
23681408 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
39 25 0.19
40 105 0.80
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23681414 original size:80 final size:79
Alignment explanation
Indices: 23681275--23681430 Score: 192
Period size: 80 Copynumber: 2.0 Consensus size: 79
23681265 GGACTAAGAT
* **
23681275 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
23681339 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* * *
23681355 CCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
*
23681418 TATATCCGGTTAA
64 TAAATCCGGTTAA
23681431 ACTCCGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
79 9 0.14
80 55 0.83
81 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:23698683 original size:29 final size:28
Alignment explanation
Indices: 23698649--23698752 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 28
23698639 TACTCGATCA
*
23698649 CGCACACTTAGTGCCATGTGATTTAAGTT
1 CGCACACTTAGTGCCAT-TAATTTAAGTT
* * * *
23698678 CGCACACATAGTGCCATATAAAGTTGAGCT
1 CGCACACTTAGTGCCAT-T-AATTTAAGTT
23698708 CGCACACTTAGTGCCA-TACATTTCAAGCTT
1 CGCACACTTAGTGCCATTA-ATTT-AAG-TT
23698738 -GCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
23698753 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
27 1 0.02
28 4 0.07
29 34 0.56
30 22 0.36
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATTAATTTAAGTT
Found at i:23700740 original size:40 final size:40
Alignment explanation
Indices: 23700683--23700828 Score: 156
Period size: 40 Copynumber: 3.6 Consensus size: 40
23700673 TCGAATGATG
23700683 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTGACTAAA
* * *
23700723 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTGACTAAA
* *
23700763 TCCGGGGTAAGTCCCGAAGGCATTTGTGCGAGCT-ACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTA-AA
* * *
23700804 -CCGGGCTATGTCCTGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23700829 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
39 1 0.01
40 80 0.87
41 11 0.12
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAAA
Found at i:23702470 original size:40 final size:40
Alignment explanation
Indices: 23702412--23702708 Score: 375
Period size: 40 Copynumber: 7.5 Consensus size: 40
23702402 CGGATGATAA
* * * * **
23702412 CCGGGCTAAGTCCTGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
23702452 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
23702492 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
23702532 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTAATATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
23702572 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
23702612 CCGGGCTAAGACCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
23702652 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACAT
* *
23702691 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
23702709 TACTTGGCTT
Statistics
Matches: 231, Mismatches: 25, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
38 15 0.06
39 15 0.06
40 201 0.87
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:23703855 original size:13 final size:13
Alignment explanation
Indices: 23703837--23703861 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23703827 TGGTTCGACC
23703837 AAAAATTTTAGAA
1 AAAAATTTTAGAA
23703850 AAAAATTTTAGA
1 AAAAATTTTAGA
23703862 TGGACATATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (13 bp):
AAAAATTTTAGAA
Found at i:23710739 original size:40 final size:40
Alignment explanation
Indices: 23710680--23710950 Score: 350
Period size: 40 Copynumber: 6.8 Consensus size: 40
23710670 CGGATGATAA
** * * **
23710680 CCGGGCTAAGTCCTTAAGGCATTTGCGCTAGTCACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTACAT
* *
23710720 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTACAT
* *
23710760 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTACAT
*
23710800 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-CTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTC-ACTACAT
23710840 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-CTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTC-ACTACAT
* * *
23710880 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTACAT
* * *
23710920 CCGGGCTATGTTCCGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
23710951 AGCTATATCC
Statistics
Matches: 210, Mismatches: 19, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 8 0.04
40 202 0.96
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTACAT
Found at i:23710813 original size:80 final size:80
Alignment explanation
Indices: 23710680--23710950 Score: 391
Period size: 80 Copynumber: 3.4 Consensus size: 80
23710670 CGGATGATAA
** * * * **
23710680 CCGGGCTAAGTCCTTAAGGCATTTGCGCTAGTCACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
* *
23710745 TGCGAGTTATTACAT
66 TGCGAGTTACTATAT
*
23710760 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
*
23710825 TGCGAGCTACTATAT
66 TGCGAGTTACTATAT
* *
23710840 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTACATCCGGGCTAAGTCCCGAAGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
23710905 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
* * *
23710920 CCGGGCTATGTTCCGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
23710951 AGCTATATCC
Statistics
Matches: 172, Mismatches: 19, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
79 8 0.05
80 164 0.95
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAT
Found at i:23710893 original size:120 final size:119
Alignment explanation
Indices: 23710680--23710962 Score: 408
Period size: 120 Copynumber: 2.4 Consensus size: 119
23710670 CGGATGATAA
** * *
23710680 CCGGGCTAAGTCCTTAAGGCATTTGCGCTAGTCACTAGT-TCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-ACTA-TATCCGGGCTAAGTCCCGAAGGCATTT
* * * *
23710744 GTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
64 GTGCGAGCTACTACATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTACAT
*
23710800 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
23710865 TGCGAGCTACTACATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
65 TGCGAGCTACTACATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTACAT
* *
23710920 CCGGGCTATGTTCCGAAGGCA-TTGAGCGAGTAGCTATATCCGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTA-CTATATCCGG
23710963 TTAAATCCTA
Statistics
Matches: 148, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
118 2 0.01
119 19 0.13
120 126 0.85
121 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGCTACTACATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTACAT
Found at i:23729754 original size:20 final size:20
Alignment explanation
Indices: 23729726--23729763 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
23729716 CTAGGAACTA
23729726 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
23729746 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
23729764 TATATATGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:23732200 original size:81 final size:79
Alignment explanation
Indices: 23732054--23732392 Score: 313
Period size: 81 Copynumber: 4.2 Consensus size: 79
23732044 GAATACTTTA
* * * * * *
23732054 GTTTACCAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAAT
1 GTTTACAAAATTACCAAAATACCC-TGGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAAT
23732119 TACCAAAATACCCTTG
65 TACCAAAATACCC-TG
* * * *
23732135 GTTTACAAAATTACCAAAATACCTCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATGAAAT
1 GTTTACAAAATTACCAAAATACC-CTGGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAAT
23732200 TACCAAAATACCACTG
65 TACCAAAATACC-CTG
**
23732216 GTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-TCAAAATACCCCTAGTTTGTAAAA
1 GTTTACAAAATTACCAAAATA-CCCTGGTTTGTAAAATTACT-AAAATACCCCTAGTTTGTAAAA
*
23732280 TTACCAAAATACCCCAG
64 TTACCAAAATA-CCCTG
* *** ** * * * * * *
23732297 ATTTGTGAAATTACTGAAATACCCTCAGTTTGCAAAATTATTGAAATA-CCCTCGACTTGTAAAA
1 GTTTACAAAATTACCAAAATACCCT-GGTTTGTAAAATTACTAAAATACCCCTAG-TTTGTAAAA
* *
23732361 TTCCCAAAGTACCCTTG
64 TTACCAAAATACCC-TG
* *
23732378 ATTTACAGAATTACC
1 GTTTACAAAATTACC
23732393 GTTTTACCCT
Statistics
Matches: 216, Mismatches: 33, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
80 13 0.06
81 196 0.91
82 7 0.03
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.32
Consensus pattern (79 bp):
GTTTACAAAATTACCAAAATACCCTGGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATT
ACCAAAATACCCTG
Found at i:23732294 original size:27 final size:27
Alignment explanation
Indices: 23732061--23732320 Score: 331
Period size: 27 Copynumber: 9.6 Consensus size: 27
23732051 TTAGTTTACC
* * *
23732061 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
23732088 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
23732115 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
23732142 AAATTACCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * * *
23732169 AAATTACTAAAATACCCTTTGTTTATG
1 AAATTACCAAAATACCCCTGGTTTGTA
*
23732196 AAATTACCAAAATACCACTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
23732223 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
23732250 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
23732277 AAATTACCAAAATACCCCAGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
23732304 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
23732321 TCAGTTTGCA
Statistics
Matches: 199, Mismatches: 34, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 199 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:23732427 original size:27 final size:27
Alignment explanation
Indices: 23732061--23732427 Score: 246
Period size: 27 Copynumber: 13.6 Consensus size: 27
23732051 TTAGTTTACC
* * * *
23732061 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
23732088 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * **
23732115 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
23732142 AAATTACCAAAATA-CCTCTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * *
23732169 AAATTACTAAAATACCCTTTG-TTTATG
1 AAATTACCAAAATACCC-TCGATTTGTA
*
23732196 AAATTACCAAAATACCACT-GGTTTGTA
1 AAATTACCAAAATACC-CTCGATTTGTA
*
23732223 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* *
23732250 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
23732277 AAATTACCAAAATACCC-CAGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
** *
23732304 AAATTACTGAAATACCCTC-AGTTTGCA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*** *
23732331 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * **
23732358 AAATTCCCAAAGTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* **** **
23732385 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
23732412 AAATTACCGAAATACC
1 AAATTACCAAAATACC
23732428 ATTGTAGGGT
Statistics
Matches: 275, Mismatches: 51, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
26 6 0.02
27 261 0.95
28 7 0.03
29 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:23732481 original size:27 final size:27
Alignment explanation
Indices: 23732411--23732474 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
23732401 CTCGATTTAC
23732411 AAAATTACCGAA-ATACCATTGTAGGGT
1 AAAATTACC-AAGATACCATTGTAGGGT
* * *
23732438 AGAATTACCAAGATACCCTTGTGGGGT
1 AAAATTACCAAGATACCATTGTAGGGT
23732465 AAAATTACCA
1 AAAATTACCA
23732475 TTTTACCTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.06
27 30 0.94
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (27 bp):
AAAATTACCAAGATACCATTGTAGGGT
Found at i:23732570 original size:19 final size:19
Alignment explanation
Indices: 23732548--23732586 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
23732538 GTGGTTGACG
23732548 GATTTGATTGTGAATATAT
1 GATTTGATTGTGAATATAT
23732567 GATTTGATTGTGAATATAT
1 GATTTGATTGTGAATATAT
23732586 G
1 G
23732587 TTGGTGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (19 bp):
GATTTGATTGTGAATATAT
Found at i:23732830 original size:2 final size:2
Alignment explanation
Indices: 23732823--23732852 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
23732813 GCTTCGCCAC
23732823 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23732853 CTATTCTGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23733092 original size:19 final size:19
Alignment explanation
Indices: 23733064--23733113 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
23733054 ACTGATTTTG
*
23733064 ATTCTAATTCTGTCACCTA
1 ATTCTGATTCTGTCACCTA
* *
23733083 ATTCTGATTCCGTCACCTG
1 ATTCTGATTCTGTCACCTA
23733102 ATTCTGATTCTG
1 ATTCTGATTCTG
23733114 ATTCTGATTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.20, C:0.26, G:0.12, T:0.42
Consensus pattern (19 bp):
ATTCTGATTCTGTCACCTA
Found at i:23733108 original size:6 final size:6
Alignment explanation
Indices: 23733099--23733136 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
23733089 ATTCCGTCAC
23733099 CTGATT CTGATT CTGATT CTGATT CTGATT CTGATT CT
1 CTGATT CTGATT CTGATT CTGATT CTGATT CTGATT CT
23733137 AGCTCTGATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.16, C:0.18, G:0.16, T:0.50
Consensus pattern (6 bp):
CTGATT
Found at i:23733143 original size:18 final size:18
Alignment explanation
Indices: 23733099--23733145 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
23733089 ATTCCGTCAC
*
23733099 CTGATTCTGATTCTGATT
1 CTGACTCTGATTCTGATT
*
23733117 CTGATTCTGATTCTGATT
1 CTGACTCTGATTCTGATT
23733135 CT-AGCTCTGAT
1 CTGA-CTCTGAT
23733146 AATGATTCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 1 0.04
18 26 0.96
ACGTcount: A:0.17, C:0.19, G:0.17, T:0.47
Consensus pattern (18 bp):
CTGACTCTGATTCTGATT
Found at i:23733161 original size:18 final size:18
Alignment explanation
Indices: 23733102--23733165 Score: 51
Period size: 18 Copynumber: 3.6 Consensus size: 18
23733092 CCGTCACCTG
** *
23733102 ATTCTGATTCTGATTCTG
1 ATTCTGATAATGATTCTT
**
23733120 ATTCTGATTCTGATTC-T
1 ATTCTGATAATGATTCTT
*
23733137 AGCTCTGATAATGATTCTT
1 A-TTCTGATAATGATTCTT
23733156 ATTCTG-TAAT
1 ATTCTGATAAT
23733166 TGGTTAAAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
17 5 0.13
18 32 0.82
19 2 0.05
ACGTcount: A:0.22, C:0.16, G:0.14, T:0.48
Consensus pattern (18 bp):
ATTCTGATAATGATTCTT
Found at i:23735158 original size:27 final size:28
Alignment explanation
Indices: 23735105--23735230 Score: 118
Period size: 27 Copynumber: 4.7 Consensus size: 28
23735095 CATTGGTTTA
* *
23735105 TAAAATCACCAAAATACCCCT-AGTTTG
1 TAAAATTACCAAAATACCCCTCAATTTG
23735132 TAAAATTACCAAAATACCCCT-AATTTG
1 TAAAATTACCAAAATACCCCTCAATTTG
* * *
23735159 TGAAATTA-CTAAATA-CCCTCAGTTTG
1 TAAAATTACCAAAATACCCCTCAATTTG
*** * *
23735185 TAAAATTATTGAAATA-CCCTCGACTTG
1 TAAAATTACCAAAATACCCCTCAATTTG
*
23735212 TAAAATTACCAAAGTACCC
1 TAAAATTACCAAAATACCC
23735231 TTGATTTACA
Statistics
Matches: 81, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
25 4 0.05
26 18 0.22
27 57 0.70
28 2 0.02
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (28 bp):
TAAAATTACCAAAATACCCCTCAATTTG
Found at i:23735218 original size:53 final size:54
Alignment explanation
Indices: 23735105--23735231 Score: 134
Period size: 53 Copynumber: 2.4 Consensus size: 54
23735095 CATTGGTTTA
* *
23735105 TAAAATCACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAATTTG
1 TAAAATTACC-AAATACCCTCTAGTTTGTAAAATTACCAAAATACCCCTAACTTG
* * *** *
23735159 TGAAATTACTAAATACCCTC-AGTTTGTAAAATTATTGAAATA-CCCTCGACTTG
1 TAAAATTACCAAATACCCTCTAGTTTGTAAAATTACCAAAATACCCCT-AACTTG
23735212 TAAAATTACCAAAGTACCCT
1 TAAAATTACCAAA-TACCCT
23735232 TGATTTACAG
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
52 4 0.07
53 42 0.70
54 14 0.23
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (54 bp):
TAAAATTACCAAATACCCTCTAGTTTGTAAAATTACCAAAATACCCCTAACTTG
Found at i:23735245 original size:27 final size:26
Alignment explanation
Indices: 23735213--23735286 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 26
23735203 CTCGACTTGT
23735213 AAAATTACCAAAGTACCCTTGATTTAC
1 AAAATTACCAAA-TACCCTTGATTTAC
* *** *
23735240 AGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACC-AAATACCCTTGATTTAC
23735267 AAAATTACCGAAATACCCTT
1 AAAATTACC-AAATACCCTT
23735287 ATAGGGTAGA
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.31
Consensus pattern (26 bp):
AAAATTACCAAATACCCTTGATTTAC
Found at i:23735299 original size:27 final size:27
Alignment explanation
Indices: 23735267--23735329 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
23735257 CTCGATTTAC
23735267 AAAATTACCGAAATACCCTTATAGGGT
1 AAAATTACCGAAATACCCTTATAGGGT
* * * *
23735294 AGAATTACCGAGATACCCTTGTGGGGT
1 AAAATTACCGAAATACCCTTATAGGGT
23735321 AAAATTACC
1 AAAATTACC
23735330 ATTTTACCTC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTATAGGGT
Found at i:23735897 original size:31 final size:31
Alignment explanation
Indices: 23735850--23735929 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 31
23735840 TTGCATTCAC
* * *
23735850 ATTCTGATTTTGATTCTGTTACCTGATACTAA
1 ATTCTGATTCTAATTCTGTCACCTGATACT-A
* *
23735882 ATT-TGATTCTAATTCTGTCACCTGATTCTG
1 ATTCTGATTCTAATTCTGTCACCTGATACTA
*
23735912 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTAATTCTG
23735930 ATTCTAGTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
30 3 0.07
31 35 0.85
32 3 0.07
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTGATACTA
Found at i:23735912 original size:6 final size:6
Alignment explanation
Indices: 23735903--23735959 Score: 71
Period size: 6 Copynumber: 9.5 Consensus size: 6
23735893 ATTCTGTCAC
* *
23735903 CTGATT CTGATT CTGATT CTGATT CTGATT CT-AGTT CTGATA ATGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGATT CTGATT
*
23735951 CTTATT CTG
1 CTGATT CTG
23735960 TAATGGGTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
5 1 0.02
6 41 0.95
7 1 0.02
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.49
Consensus pattern (6 bp):
CTGATT
Found at i:23737914 original size:27 final size:27
Alignment explanation
Indices: 23737890--23738205 Score: 314
Period size: 27 Copynumber: 11.7 Consensus size: 27
23737880 TTAGTTTACC
* *
23737890 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
23737917 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
23737944 AAATTACCAAAACACCCTTGG-TT-TA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
23737969 CAAATTTCAAAAATACCCTGGGTTTGTA
1 -AAATTACCAAAATACCCTTGGTTTGTA
* * *
23737997 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
23738024 AAATTACCAAAATACCAC-TGGTTTGTA
1 AAATTACCAAAATACC-CTTGGTTTGTA
* * *
23738051 AAATTACCAAAATACCCCTAGCTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
23738078 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
23738105 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
* ** *
23738132 AAATTACTAAAATACCCTCAGTTTGCA
1 AAATTACCAAAATACCCTTGGTTTGTA
*** * **
23738159 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
23738186 AAATTACCAAAGTACCCTTG
1 AAATTACCAAAATACCCTTG
23738206 ATTTACAGAA
Statistics
Matches: 239, Mismatches: 45, Indels: 10
0.81 0.15 0.03
Matches are distributed among these distances:
25 2 0.01
26 20 0.08
27 214 0.90
28 3 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:23738217 original size:27 final size:26
Alignment explanation
Indices: 23737943--23738259 Score: 90
Period size: 27 Copynumber: 11.8 Consensus size: 26
23737933 CCTAGTTTGT
* *
23737943 AAAATTACCAAAACACCCTTGGTTTAC
1 AAAATTACC-AAATACCCTTGATTTAC
* * * * **
23737970 -AAATTTCAAAAATACCCTGGGTTTGT
1 AAAATTAC-CAAATACCCTTGATTTAC
* *
23737996 AAAATTACTAAAATACCCTTTG-TTTAT
1 AAAATTAC-CAAATACCC-TTGATTTAC
* **
23738023 AAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACC-AAATACC-CTTGATTTAC
* *
23738050 AAAATTACCAAAATACCCCTAGCTTGT--
1 AAAATTACC-AAATA-CCCTTGATT-TAC
* **
23738077 AAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACC-AAATACCCTTGA-TTTAC
* **
23738104 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACC-AAATACCCTTGATTTAC
* * * *
23738131 GAAATTACTAAAATACCC-TCAGTTTGC
1 AAAATTAC-CAAATACCCTTGA-TTTAC
** * * **
23738158 AAAATTATTGAAATACCCTCGACTTGT
1 AAAATTA-CCAAATACCCTTGATTTAC
23738185 AAAATTACCAAAGTACCCTTGATTTAC
1 AAAATTACCAAA-TACCCTTGATTTAC
* **** *
23738212 AGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTAC-CAAATACCCTTGATTTAC
23738239 AAAATTACCGAAATACCCTTG
1 AAAATTACC-AAATACCCTTG
23738260 TAGGGTAGAA
Statistics
Matches: 224, Mismatches: 46, Indels: 40
0.72 0.15 0.13
Matches are distributed among these distances:
25 1 0.00
26 31 0.14
27 181 0.81
28 10 0.04
29 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.31
Consensus pattern (26 bp):
AAAATTACCAAATACCCTTGATTTAC
Found at i:23738229 original size:81 final size:81
Alignment explanation
Indices: 23737890--23738257 Score: 223
Period size: 81 Copynumber: 4.6 Consensus size: 81
23737880 TTAGTTTACC
* * * * * * *
23737890 AAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCC-CTAGTTTGTAAAATTACCAA
1 AAATTACTAAAATACCCTCGATTTACAAAATTACCGAAATACCCTCGA-CTTGTAAAATTACCAA
* * * *
23737954 AACACCCTTGGTTT-AC
65 AATACCCCTGATTTCAG
* * * * ** ** * * *
23737970 AAATTTCAAAAATACCCTGGGTTTGTAAAATTACTAAAATACCCTTTG-TTTATAAAATTACCAA
1 AAATTACTAAAATACCCTCGATTTACAAAATTACCGAAATACCC-TCGACTTGTAAAATTACCAA
* * *
23738034 AATACCACTGGTTTGTA-
65 AATACCCCTGATTT-CAG
* * * * * *
23738051 AAATTACCAAAATACCCCTAGCTTGT--AAAATTACCAAAATACCC-CTAGTTTGTAAAATTACC
1 AAATTACTAAAATA-CCCTCGATT-TACAAAATTACCGAAATACCCTCGA-CTTGTAAAATTACC
**
23738113 AAAATACCCCTGATTTGTG
63 AAAATACCCCTGATTTCAG
* **
23738132 AAATTACTAAAATACCCTC-AGTTTGCAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAA
1 AAATTACTAAAATACCCTCGA-TTTACAAAATTACCGAAATACCCTCGACTTGTAAAATTACCAA
* *
23738196 AGTACCCTTGATTTACAG
65 AATACCCCTGATTT-CAG
****
23738214 -AATTACTGTTTTACCCTCGATTTACAAAATTACCGAAATACCCT
1 AAATTACTAAAATACCCTCGATTTACAAAATTACCGAAATACCCT
23738258 TGTAGGGTAG
Statistics
Matches: 230, Mismatches: 43, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
79 1 0.00
80 70 0.30
81 146 0.63
82 12 0.05
83 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTACTAAAATACCCTCGATTTACAAAATTACCGAAATACCCTCGACTTGTAAAATTACCAAA
ATACCCCTGATTTCAG
Found at i:23738271 original size:27 final size:27
Alignment explanation
Indices: 23738239--23738301 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
23738229 CTCGATTTAC
23738239 AAAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * * *
23738266 AGAATTACTGAGATACCCTTGTGGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
23738293 AAAATTACC
1 AAAATTACC
23738302 ATTTTACCTC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTGTAGGGT
Found at i:23738898 original size:31 final size:31
Alignment explanation
Indices: 23738851--23738930 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 31
23738841 TTGCATTGAC
* * * *
23738851 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTAATTCTGTCACCTAATACTG
* **
23738882 ATTTTGATTCTAATTCTGTCACCTAATTTTG
1 ATTCTGATTCTAATTCTGTCACCTAATACTG
*
23738913 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTAATTCTG
23738931 ATTCTATCAC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTAATACTG
Found at i:23738920 original size:37 final size:37
Alignment explanation
Indices: 23738873--23738973 Score: 139
Period size: 37 Copynumber: 2.7 Consensus size: 37
23738863 ATTCTGTTAC
* *
23738873 CTGATACTGATTTTGATTCTAATTCTGTCACCTAATT
1 CTGATTCTGATTTTGATTCTGATTCTGTCACCTAATT
* * * *
23738910 TTGATTCTGATTCTGATTCTGATTCTATCACCTGATT
1 CTGATTCTGATTTTGATTCTGATTCTGTCACCTAATT
*
23738947 CTGATTCTGATTTTGATTTTGATTCTG
1 CTGATTCTGATTTTGATTCTGATTCTG
23738974 ATTCTGATTC
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.50
Consensus pattern (37 bp):
CTGATTCTGATTTTGATTCTGATTCTGTCACCTAATT
Found at i:23738922 original size:6 final size:6
Alignment explanation
Indices: 23738911--23739009 Score: 103
Period size: 6 Copynumber: 16.3 Consensus size: 6
23738901 CACCTAATTT
* *
23738911 TGATTC TGATTC TGATTC TGATTC T-ATCACC TGATTC TGATTC TGATTT
1 TGATTC TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC
* ** *
23738960 TGATTT TGATTC TGATTC TGATTC T-AGTTC TGATAA TGATTC TTATTC
1 TGATTC TGATTC TGATTC TGATTC TGA-TTC TGATTC TGATTC TGATTC
23739008 TG
1 TG
23739010 TAATGGGTTA
Statistics
Matches: 78, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
5 3 0.04
6 70 0.90
7 3 0.04
8 2 0.03
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (6 bp):
TGATTC
Found at i:23738983 original size:12 final size:12
Alignment explanation
Indices: 23738851--23739009 Score: 110
Period size: 12 Copynumber: 13.0 Consensus size: 12
23738841 TTGCATTGAC
*
23738851 ATTCTGATTTTG
1 ATTCTGATTCTG
23738863 ATTCTG-TTACCTG
1 ATTCTGATT--CTG
* *
23738876 ATACTGATTTTG
1 ATTCTGATTCTG
*
23738888 ATTCTAATTCTG
1 ATTCTGATTCTG
* * *
23738900 -TCACCTAATTTTG
1 AT--TCTGATTCTG
23738913 ATTCTGATTCTG
1 ATTCTGATTCTG
23738925 ATTCTGATTCT-
1 ATTCTGATTCTG
*
23738936 ATCACCTGATTCTG
1 AT--TCTGATTCTG
*
23738950 ATTCTGATTTTG
1 ATTCTGATTCTG
*
23738962 ATTTTGATTCTG
1 ATTCTGATTCTG
23738974 ATTCTGATTCT-
1 ATTCTGATTCTG
**
23738985 AGTTCTGATAATG
1 A-TTCTGATTCTG
*
23738998 ATTCTTATTCTG
1 ATTCTGATTCTG
23739010 TAATGGGTTA
Statistics
Matches: 114, Mismatches: 22, Indels: 22
0.72 0.14 0.14
Matches are distributed among these distances:
11 6 0.05
12 79 0.69
13 24 0.21
14 5 0.04
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (12 bp):
ATTCTGATTCTG
Found at i:23741018 original size:27 final size:28
Alignment explanation
Indices: 23740965--23741091 Score: 109
Period size: 27 Copynumber: 4.7 Consensus size: 28
23740955 CATTGGTTTA
* *
23740965 TAAAATCACCAAAATACCCCT-AGTTTG
1 TAAAATTACCAAAATACCCCTCAATTTG
23740992 TAAAATTACCAAAATACCCCT-AATTTG
1 TAAAATTACCAAAATACCCCTCAATTTG
* ** *
23741019 TGAAATTACTGAAATA-CCCTCAGTTTG
1 TAAAATTACCAAAATACCCCTCAATTTG
* *** * *
23741046 CAAAATTATTGAAATA-CCCTCGACTTG
1 TAAAATTACCAAAATACCCCTCAATTTG
*
23741073 TAAAATTACCAAAGTACCC
1 TAAAATTACCAAAATACCC
23741092 TTGATTTACA
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
26 4 0.05
27 75 0.93
28 2 0.02
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (28 bp):
TAAAATTACCAAAATACCCCTCAATTTG
Found at i:23741106 original size:27 final size:26
Alignment explanation
Indices: 23741074--23741148 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 26
23741064 CTCGACTTGT
23741074 AAAATTACCAAAGTACCCTTGATTTAC
1 AAAATTACCAAA-TACCCTTGATTTAC
* *** *
23741101 AGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACC-AAATACCCTTGATTTAC
23741128 AAAATTACCGAAATACCCTTG
1 AAAATTACC-AAATACCCTTG
23741149 TAGGGTAGAA
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.36, C:0.24, G:0.09, T:0.31
Consensus pattern (26 bp):
AAAATTACCAAATACCCTTGATTTAC
Found at i:23741768 original size:6 final size:6
Alignment explanation
Indices: 23741759--23741805 Score: 78
Period size: 6 Copynumber: 7.8 Consensus size: 6
23741749 ATTCTGTCAC
23741759 CTGATT CTGATT CTGATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGATT CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
23741806 AATGATTCTT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
5 1 0.03
6 37 0.95
7 1 0.03
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.49
Consensus pattern (6 bp):
CTGATT
Found at i:23741811 original size:18 final size:18
Alignment explanation
Indices: 23741759--23741814 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
23741749 ATTCTGTCAC
**
23741759 CTGATTCTGATTCTGATT
1 CTGATTCTGATAATGATT
**
23741777 CTGATTCTGATTCTGATT
1 CTGATTCTGATAATGATT
23741795 CT-AGTTCTGATAATGATT
1 CTGA-TTCTGATAATGATT
23741813 CT
1 CT
23741815 TATTTTGTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
17 1 0.03
18 34 0.97
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.48
Consensus pattern (18 bp):
CTGATTCTGATAATGATT
Found at i:23743776 original size:27 final size:27
Alignment explanation
Indices: 23743752--23744063 Score: 355
Period size: 27 Copynumber: 11.6 Consensus size: 27
23743742 TTAGTTTACC
* * *
23743752 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
23743779 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
23743806 AAATTACCAAAATACCCTTGG-TT-TA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
23743831 CAAATTACCAAAATACCCCGGGTTTGTA
1 -AAATTACCAAAATACCCCTGGTTTGTA
* * * *
23743859 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
23743886 AAATTACCAAAATACCACTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
23743913 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
23743940 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
23743967 AAATTACC-AAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
23743993 AAATTACTAAAATA-CCCTCAGTTTGCA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*** **
23744020 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
23744047 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
23744064 TTGATTTACA
Statistics
Matches: 241, Mismatches: 38, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
25 2 0.01
26 47 0.20
27 188 0.78
28 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:23743979 original size:107 final size:106
Alignment explanation
Indices: 23743752--23744063 Score: 380
Period size: 107 Copynumber: 2.9 Consensus size: 106
23743742 TTAGTTTACC
*
23743752 AAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATA-CCCTAGTTTGTAAAATTACCAAA
* *
23743817 ATACCCTTGGTT-TACAAATTACCAAAATACCCCGGGTTTGTA
65 ATACCCCTGGTTGTA-AAATTACCAAAATACCCCGAGTTTGTA
*
23743859 AAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAA
1 AAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACC-CTAGTTTGTAAAATTACCAAA
*
23743924 ATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTA
65 ATACCCCTGG-TTGTAAAATTACCAAAATACCCCGAGTTTGTA
* * * * * * ***
23743967 AAATTAC-CAAATACCC-CTGATTTGTGAAATTACTAAAATACCCTCAGTTTGCAAAATTATTGA
1 AAATTACTAAAATACCCTTTG-TTTATAAAATTACCAAAATACCCT-AGTTTGTAAAATTACCAA
* *
23744030 AATA-CCCTCGACTTGTAAAATTACCAAAGTACCC
64 AATACCCCT-G-GTTGTAAAATTACCAAAATACCC
23744064 TTGATTTACA
Statistics
Matches: 181, Mismatches: 17, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
106 10 0.06
107 135 0.75
108 34 0.19
109 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (106 bp):
AAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAA
TACCCCTGGTTGTAAAATTACCAAAATACCCCGAGTTTGTA
Found at i:23744078 original size:27 final size:26
Alignment explanation
Indices: 23743805--23744120 Score: 129
Period size: 27 Copynumber: 11.8 Consensus size: 26
23743795 CCTAGTTTGT
*
23743805 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACC-AAATACCCTTGATTTAC
** * **
23743832 -AAATTACCAAAATACCCCGGGTTTGT
1 AAAATTACC-AAATACCCTTGATTTAC
* *
23743858 AAAATTACTAAAATACCCTTTG-TTTAT
1 AAAATTAC-CAAATACCC-TTGATTTAC
* **
23743885 AAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACC-AAATACC-CTTGATTTAC
* * **
23743912 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACC-AAATACCCTTGATTTAC
* **
23743939 AAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACC-AAATACCCTTGA-TTTAC
* **
23743966 AAAATTACCAAATACCCCTGATTTGT
1 AAAATTACCAAATACCCTTGATTTAC
* * * *
23743992 GAAATTACTAAAATACCC-TCAGTTTGC
1 AAAATTAC-CAAATACCCTTGA-TTTAC
** * * **
23744019 AAAATTATTGAAATACCCTCGACTTGT
1 AAAATTA-CCAAATACCCTTGATTTAC
23744046 AAAATTACCAAAGTACCCTTGATTTAC
1 AAAATTACCAAA-TACCCTTGATTTAC
* **** *
23744073 AGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTAC-CAAATACCCTTGATTTAC
23744100 AAAATTACCGAAATACCCTTG
1 AAAATTACC-AAATACCCTTG
23744121 TAGGGTAGAA
Statistics
Matches: 233, Mismatches: 40, Indels: 32
0.76 0.13 0.10
Matches are distributed among these distances:
26 52 0.22
27 178 0.76
28 3 0.01
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.31
Consensus pattern (26 bp):
AAAATTACCAAATACCCTTGATTTAC
Found at i:23744079 original size:134 final size:132
Alignment explanation
Indices: 23743744--23744080 Score: 340
Period size: 134 Copynumber: 2.5 Consensus size: 132
23743734 AGAATACTTT
* * ** * * *
23743744 AGTTTACCAAATTACTAAAATACC-CTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAA
1 AGTTTACAAAATTACCAAAATACCAC-TGACTTGTAAAATTACCAAAATA-CCCTTGATT-TAAA
* *
23743808 ATTACCAAAATACCCTTGGTTTACAAATTACCAAAATACCCCGGGTTTGTAAAATTACTAAAATA
63 ATTACCAAAATACCCTAGGTTTACAAATTACCAAAATACCCCGGATTTGTAAAATTACTAAAATA
*
23743873 CCCTT
128 CCCTC
* * ** * *
23743878 TGTTTATAAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAA
1 AGTTTACAAAATTACCAAAATACCACTGACTTGTAAAATTACCAAAATA-CCCTTGATT-TAAAA
* * *
23743943 TTACCAAAATACCCCTAGTTTGTA-AAATTACC-AAATACCCCTGATTTGTGAAATTACTAAAAT
64 TTACCAAAATA-CCCTAGGTT-TACAAATTACCAAAATACCCCGGATTTGTAAAATTACTAAAAT
23744006 ACCCTC
127 ACCCTC
* *** *
23744012 AGTTTGCAAAATTATTGAAATACC-CTCGACTTGTAAAATTACCAAAGTACCCTTGATTTACAGA
1 AGTTTACAAAATTACCAAAATACCACT-GACTTGTAAAATTACCAAAATACCCTTGATTTA-A-A
23744076 ATTAC
63 ATTAC
23744081 TGTTTTACCC
Statistics
Matches: 174, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
132 2 0.01
133 10 0.06
134 144 0.83
135 16 0.09
136 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (132 bp):
AGTTTACAAAATTACCAAAATACCACTGACTTGTAAAATTACCAAAATACCCTTGATTTAAAATT
ACCAAAATACCCTAGGTTTACAAATTACCAAAATACCCCGGATTTGTAAAATTACTAAAATACCC
TC
Found at i:23744104 original size:81 final size:80
Alignment explanation
Indices: 23743752--23744118 Score: 230
Period size: 80 Copynumber: 4.6 Consensus size: 80
23743742 TTAGTTTACC
** * * * *
23743752 AAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAA
1 AAATTACTAAAATACCCTCAGTTTACAAAATTACCGAAATACCCTCGA-CTTGTAAAATTACC-A
* * *
23743816 AATACCCTTGGTTT-AC
64 AATACCCCTGATTTCAG
* * ** ** * * *
23743832 AAATTACCAAAATACCC-CGGGTTTGTAAAATTACTAAAATACCCTTTG-TTTATAAAATTACCA
1 AAATTACTAAAATACCCTC-AGTTTACAAAATTACCGAAATACCC-TCGACTTGTAAAATTACC-
* * *
23743895 AAATACCACTGGTTTGTA-
63 AAATACCCCTGATTT-CAG
* * ** * * *
23743913 AAATTACCAAAATACCC-CTGGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCA
1 AAATTACTAAAATACCCTC-AGTTTACAAAATTACCGAAATACCCTCGA-CTTGTAAAATTACCA
**
23743976 AATACCCCTGATTTGTG
64 AATACCCCTGATTTCAG
* **
23743993 AAATTACTAAAATACCCTCAGTTTGCAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAAA
1 AAATTACTAAAATACCCTCAGTTTACAAAATTACCGAAATACCCTCGACTTGTAAAATTACCAAA
*
23744058 GTACCCTTGATTTACAG
66 -TACCCCTGATTT-CAG
****
23744075 -AATTACTGTTTTACCCTC-GATTTACAAAATTACCGAAATACCCT
1 AAATTACTAAAATACCCTCAG-TTTACAAAATTACCGAAATACCCT
23744119 TGTAGGGTAG
Statistics
Matches: 238, Mismatches: 36, Indels: 25
0.80 0.12 0.08
Matches are distributed among these distances:
80 132 0.55
81 104 0.44
82 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (80 bp):
AAATTACTAAAATACCCTCAGTTTACAAAATTACCGAAATACCCTCGACTTGTAAAATTACCAAA
TACCCCTGATTTCAG
Found at i:23744132 original size:27 final size:27
Alignment explanation
Indices: 23744100--23744162 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
23744090 CTCGATTTAC
23744100 AAAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * * *
23744127 AGAATTACTGAGATACCCTTGTGGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
23744154 AAAATTACC
1 AAAATTACC
23744163 ATTTTACCTC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTGTAGGGT
Found at i:23744535 original size:31 final size:32
Alignment explanation
Indices: 23744497--23744558 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
23744487 CTCGCTGCAA
* *
23744497 TCTGGTGGCTTCGCCAC-ATAGA-TATATCTGT
1 TCTGGTGGCCTAGCCACAATA-ACTATATCTGT
23744528 TCTGGTGGCCTAGCCACAATAACTATATCTG
1 TCTGGTGGCCTAGCCACAATAACTATATCTG
23744559 GTGACGTCGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATAACTATATCTGT
Found at i:23744546 original size:71 final size:71
Alignment explanation
Indices: 23744407--23744548 Score: 203
Period size: 71 Copynumber: 2.0 Consensus size: 71
23744397 GAGGAAGCGT
* * * * *
23744407 TCTGGCAAACTCACTGTAATCTGGTGGCCTCGCCACATATATATATCTGTTCTGGTGACTTTGTC
1 TCTGGCAAACTCACTGCAATCTGGTGGCCTCGCCACATAGATATATCTGTTCTGGTGACCTAGCC
23744472 ACAATA
66 ACAATA
* * * *
23744478 TCTGGCAACCTCGCTGCAATCTGGTGGCTTCGCCACATAGATATATCTGTTCTGGTGGCCTAGCC
1 TCTGGCAAACTCACTGCAATCTGGTGGCCTCGCCACATAGATATATCTGTTCTGGTGACCTAGCC
23744543 ACAATA
66 ACAATA
23744549 ACTATATCTG
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (71 bp):
TCTGGCAAACTCACTGCAATCTGGTGGCCTCGCCACATAGATATATCTGTTCTGGTGACCTAGCC
ACAATA
Found at i:23744767 original size:37 final size:37
Alignment explanation
Indices: 23744720--23744819 Score: 121
Period size: 37 Copynumber: 2.7 Consensus size: 37
23744710 ATTCTGTTAC
* *
23744720 CTGATACTGATTTTGATTCTAAATT-TGTCACCTAATT
1 CTGATTCTGATTTTGATTCT-AATTCTATCACCTAATT
* * * *
23744757 TTGATTCTGATTCTGATTCTGATTCTATCACCTGATT
1 CTGATTCTGATTTTGATTCTAATTCTATCACCTAATT
*
23744794 CTGATTCTGATTTTGATTCTGATTCT
1 CTGATTCTGATTTTGATTCTAATTCT
23744820 GATTCTGATT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
36 3 0.06
37 51 0.94
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTTTGATTCTAATTCTATCACCTAATT
Found at i:23744769 original size:6 final size:6
Alignment explanation
Indices: 23744758--23744831 Score: 105
Period size: 6 Copynumber: 12.2 Consensus size: 6
23744748 CACCTAATTT
* *
23744758 TGATTC TGATTC TGATTC TGATTC T-ATCACC TGATTC TGATTC TGATTT
1 TGATTC TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC
23744807 TGATTC TGATTC TGATTC TGATTC T
1 TGATTC TGATTC TGATTC TGATTC T
23744832 AGTTCTTATA
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
5 2 0.03
6 55 0.90
7 2 0.03
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.50
Consensus pattern (6 bp):
TGATTC
Found at i:23746817 original size:26 final size:26
Alignment explanation
Indices: 23746773--23746885 Score: 79
Period size: 27 Copynumber: 4.2 Consensus size: 26
23746763 CCCTGTTTAG
* *
23746773 AATA-CTTTAGTTTACCAAATTATTAA
1 AATACCTTTGGTTTA-CAAATTACTAA
*
23746799 AATACCTTTGGTTTACAAATTTACCAA
1 AATACCTTTGGTTTACAAA-TTACTAA
**
23746826 AATACCCCTGGTTTGTA-AAATTACTAA
1 AATACCTTTGG-TT-TACAAATTACTAA
* * *
23746853 AATACCCTTT-GTTTATAAAATAACCAA
1 AATA-CCTTTGGTTTA-CAAATTACTAA
23746880 AATACC
1 AATACC
23746886 ACTGGTTTGT
Statistics
Matches: 70, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
25 2 0.03
26 12 0.17
27 46 0.66
28 8 0.11
29 2 0.03
ACGTcount: A:0.41, C:0.18, G:0.06, T:0.35
Consensus pattern (26 bp):
AATACCTTTGGTTTACAAATTACTAA
Found at i:23746921 original size:81 final size:80
Alignment explanation
Indices: 23746819--23747066 Score: 254
Period size: 81 Copynumber: 3.1 Consensus size: 80
23746809 GTTTACAAAT
* * *
23746819 TTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATAACCAAAATA
1 TTACCTAAATACCCCTAGTTTGTAAAATTA-TAAAATACCCTTAGTTTATAAAATAACCAAAATA
*
23746884 CCAC-TGGTTTGTAAAA
65 CC-CTTGATTTGTAAAA
* * *
23746900 TTACCTAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATA
1 TTACCTAAATACCCCTAGTTTGTAAAATTAT-AAAATACCCTTAGTTTATAAAATAACCAAAATA
*
23746965 CCCTTGATTTGTGAAA
65 CCCTTGATTTGTAAAA
* * * * *
23746981 TTA-CTAAAATA-CCCTCAGTTTGCAAAATTATTGAAATACCCTT-GACTTGTAAAATTA-CAAA
1 TTACCT-AAATACCCCT-AGTTTGTAAAATTA-TAAAATACCCTTAG-TTTATAAAATAACCAAA
* *
23747042 AGTACCCTTGATTTATAGAA
62 A-TACCCTTGATTTGTAAAA
23747062 TTACC
1 TTACC
23747067 GTTTTACCCT
Statistics
Matches: 144, Mismatches: 15, Indels: 15
0.83 0.09 0.09
Matches are distributed among these distances:
80 14 0.10
81 128 0.89
82 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (80 bp):
TTACCTAAATACCCCTAGTTTGTAAAATTATAAAATACCCTTAGTTTATAAAATAACCAAAATAC
CCTTGATTTGTAAAA
Done.