Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 87 of 438
Found at i:23746994 original size:27 final size:27
Alignment explanation
Indices: 23746789--23747065 Score: 210
Period size: 27 Copynumber: 10.3 Consensus size: 27
23746779 TTAGTTTACC
* * * **
23746789 AAATTATTAAAATACCTTTGGTTTACA
1 AAATTACTAAAATACCCTTGATTTGTA
* * * *
23746816 AATTTACCAAAATACCCCTGGTTTGTA
1 AAATTACTAAAATACCCTTGATTTGTA
*
23746843 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACTAAAATACCC-TTGATTTGTA
* * *
23746870 AAATAACCAAAATACCAC-TGGTTTGTA
1 AAATTACTAAAATACC-CTTGATTTGTA
*
23746897 AAATTACCT-AAATACCCCT-AGTTTGTA
1 AAATTA-CTAAAATACCCTTGA-TTTGTA
*
23746924 AAATTA-TCAAAATACCCCT-AGTTTGTA
1 AAATTACT-AAAATACCCTTGA-TTTGTA
* *
23746951 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACTAAAATACCCTTGATTTGTA
* *
23746978 AAATTACTAAAATACCC-TCAGTTTGCA
1 AAATTACTAAAATACCCTTGA-TTTGTA
* * *
23747005 AAATTATTGAAATACCCTTGACTTGTA
1 AAATTACTAAAATACCCTTGATTTGTA
*
23747032 AAATTAC-AAAAGTACCCTTGATTTATA
1 AAATTACTAAAA-TACCCTTGATTTGTA
*
23747059 GAATTAC
1 AAATTAC
23747066 CGTTTTACCC
Statistics
Matches: 203, Mismatches: 34, Indels: 26
0.77 0.13 0.10
Matches are distributed among these distances:
25 1 0.00
26 8 0.04
27 187 0.92
28 7 0.03
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.34
Consensus pattern (27 bp):
AAATTACTAAAATACCCTTGATTTGTA
Found at i:23747075 original size:81 final size:81
Alignment explanation
Indices: 23746797--23747104 Score: 220
Period size: 81 Copynumber: 3.8 Consensus size: 81
23746787 CCAAATTATT
* * * * * *
23746797 AAAATACCTTTGGTTTA-CAAATTTACCAAAATACCC-CTGGTTTGTAAAATTA-CTAAAATACC
1 AAAATACCCTTGATTTATGAAA-TTACCAAAATACCCTC-AGTTTGAAAAATTATC-GAAATACC
* * * * *
23746859 CTTTGTTTATAAAATAACC
63 CCTAGCTTGTAAAATTACC
* * * * * *
23746878 AAAATACCAC-TGGTTTGTAAAATTACCTAAATACCC-CTAGTTTGTAAAATTATCAAAATACCC
1 AAAATACC-CTTGATTTATGAAATTACCAAAATACCCTC-AGTTTGAAAAATTATCGAAATACCC
*
23746941 CTAGTTTGTAAAATTACC
64 CTAGCTTGTAAAATTACC
* * * *
23746959 AAAATACCCTTGATTTGTGAAATTACTAAAATACCCTCAGTTTGCAAAATTATTGAAATA-CCCT
1 AAAATACCCTTGATTTATGAAATTACCAAAATACCCTCAGTTTGAAAAATTATCGAAATACCCCT
*
23747023 TGACTTGTAAAATTA-C
66 AG-CTTGTAAAATTACC
**** *
23747039 AAAAGTACCCTTGATTTAT-AGAATTACCGTTTTACCCTC-GATTTAAAAAATTATCGAAATACC
1 AAAA-TACCCTTGATTTATGA-AATTACCAAAATACCCTCAG-TTTGAAAAATTATCGAAATACC
23747102 CCT
63 CCT
23747105 GTAGGGTAGA
Statistics
Matches: 190, Mismatches: 27, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
80 13 0.07
81 168 0.88
82 9 0.05
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (81 bp):
AAAATACCCTTGATTTATGAAATTACCAAAATACCCTCAGTTTGAAAAATTATCGAAATACCCCT
AGCTTGTAAAATTACC
Found at i:23747101 original size:27 final size:27
Alignment explanation
Indices: 23746864--23747102 Score: 94
Period size: 27 Copynumber: 8.9 Consensus size: 27
23746854 ATACCCTTTG
* * * *
23746864 TTTATAAAATAACCAAAATACCACT-GG
1 TTTATAAAATTATCGAAATACC-CTCGA
* * * *
23746891 TTTGTAAAATTACCTAAATACCC-CTA
1 TTTATAAAATTATCGAAATACCCTCGA
* * *
23746917 GTTTGTAAAATTATCAAAATACCC-CTA
1 -TTTATAAAATTATCGAAATACCCTCGA
* * * *
23746944 GTTTGTAAAATTACCAAAATACCCTTGA
1 -TTTATAAAATTATCGAAATACCCTCGA
* * *
23746972 TTTGTGAAATTA-CTAAAATACCCTC-A
1 TTTATAAAATTATC-GAAATACCCTCGA
** * *
23746998 GTTTGCAAAATTATTGAAATACCCTTGA
1 -TTTATAAAATTATCGAAATACCCTCGA
* * * *
23747026 CTTGTAAAATTA-CAAAAGTACCCTTGA
1 TTTATAAAATTATCGAAA-TACCCTCGA
* * ***
23747053 TTTATAGAATTACCGTTTTACCCTCGA
1 TTTATAAAATTATCGAAATACCCTCGA
*
23747080 TTTAAAAAATTATCGAAATACCC
1 TTTATAAAATTATCGAAATACCC
23747103 CTGTAGGGTA
Statistics
Matches: 168, Mismatches: 35, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
26 6 0.04
27 159 0.95
28 3 0.02
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TTTATAAAATTATCGAAATACCCTCGA
Found at i:23747144 original size:27 final size:27
Alignment explanation
Indices: 23747085--23747146 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
23747075 CTCGATTTAA
*
23747085 AAAATTATCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
* * *
23747112 AGAATTACCGAGATACCCTTGT-GGGAT
1 AAAATTACCGAAATACCCCTGTAGGG-T
23747139 AAAATTAC
1 AAAATTAC
23747147 AATTTTACCT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
26 3 0.10
27 26 0.90
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTGTAGGGT
Found at i:23747513 original size:32 final size:32
Alignment explanation
Indices: 23747465--23747527 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
23747455 CTCGCTGCAA
* *
23747465 TCTGGTGGCTTCGCCACAATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
23747497 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
23747528 GTGACTTCGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:23747705 original size:31 final size:31
Alignment explanation
Indices: 23747667--23747739 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
23747657 TTGCATTCAC
* *
23747667 ATTCTGGTTTTAATTCTGTTACCTGATACTG
1 ATTCTGGTTCTAATTCTGTCACCTGATACTG
* *
23747698 ATTCTGGTTCTAATTCTGTCACCTTATTCTG
1 ATTCTGGTTCTAATTCTGTCACCTGATACTG
*
23747729 ATTCTGATTCT
1 ATTCTGGTTCT
23747740 GATTTTGATT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGGTTCTAATTCTGTCACCTGATACTG
Found at i:23747732 original size:6 final size:6
Alignment explanation
Indices: 23747723--23747809 Score: 106
Period size: 6 Copynumber: 14.3 Consensus size: 6
23747713 CTGTCACCTT
* *
23747723 ATTCTG ATTCTG ATTCTG ATTTTG ATTCTG ATTCTG -TCACCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
*
23747772 ATTCTG ATTCTG ATTCTG ACTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
23747810 AATGTTTCTT
Statistics
Matches: 70, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
5 2 0.03
6 63 0.90
7 4 0.06
8 1 0.01
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:23747732 original size:19 final size:19
Alignment explanation
Indices: 23747705--23747777 Score: 65
Period size: 19 Copynumber: 3.6 Consensus size: 19
23747695 CTGATTCTGG
*
23747705 TTCTAATTCTGTCACCTTA
1 TTCTGATTCTGTCACCTTA
**
23747724 TTCTGATTCTGATTCTGATTTTGA
1 TTCTGATTCTG--TC--ACCTT-A
*
23747748 TTCTGATTCTGTCACCTGA
1 TTCTGATTCTGTCACCTTA
23747767 TTCTGATTCTG
1 TTCTGATTCTG
23747778 ATTCTGATTC
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
19 22 0.51
20 2 0.05
21 2 0.05
22 2 0.05
23 3 0.07
24 12 0.28
ACGTcount: A:0.16, C:0.21, G:0.14, T:0.49
Consensus pattern (19 bp):
TTCTGATTCTGTCACCTTA
Found at i:23747736 original size:43 final size:43
Alignment explanation
Indices: 23747689--23747800 Score: 161
Period size: 43 Copynumber: 2.6 Consensus size: 43
23747679 ATTCTGTTAC
* * *
23747689 CTGATACTGATTCTGGTTCTAATTCTGTCACCTTATTCTGATT
1 CTGATTCTGATTCTGATTCTAATTCTGTCACCTGATTCTGATT
* *
23747732 CTGATTCTGATTTTGATTCTGATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTAATTCTGTCACCTGATTCTGATT
* *
23747775 CTGATTCTGATTCTGACTCTGATTCT
1 CTGATTCTGATTCTGATTCTAATTCT
23747801 AGTTCTGATA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.47
Consensus pattern (43 bp):
CTGATTCTGATTCTGATTCTAATTCTGTCACCTGATTCTGATT
Found at i:23752784 original size:19 final size:19
Alignment explanation
Indices: 23752760--23752805 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
23752750 CAATGCACAT
23752760 GCCCGTGTGCTTGGGACAC
1 GCCCGTGTGCTTGGGACAC
23752779 GCCCGTGTGCTTGGGACAC
1 GCCCGTGTGCTTGGGACAC
*
23752798 GCCTGTGT
1 GCCCGTGT
23752806 CCCTTACCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.09, C:0.30, G:0.37, T:0.24
Consensus pattern (19 bp):
GCCCGTGTGCTTGGGACAC
Found at i:23760457 original size:27 final size:28
Alignment explanation
Indices: 23760406--23760463 Score: 109
Period size: 27 Copynumber: 2.1 Consensus size: 28
23760396 CCAGTACATT
23760406 TTCTTCAAATCATTATACATCTTGGTAC
1 TTCTTCAAATCATTATACATCTTGGTAC
23760434 TTCTTCAAATCA-TATACATCTTGGTAC
1 TTCTTCAAATCATTATACATCTTGGTAC
23760461 TTC
1 TTC
23760464 CAAGATGAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 18 0.60
28 12 0.40
ACGTcount: A:0.28, C:0.22, G:0.07, T:0.43
Consensus pattern (28 bp):
TTCTTCAAATCATTATACATCTTGGTAC
Found at i:23761731 original size:19 final size:19
Alignment explanation
Indices: 23761707--23761745 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
23761697 TAACTGGTAG
23761707 TACCCGGATCTCAAATCTA
1 TACCCGGATCTCAAATCTA
23761726 TACCCGGATCTCAAATCTA
1 TACCCGGATCTCAAATCTA
23761745 T
1 T
23761746 CTTAGAAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.31, G:0.10, T:0.28
Consensus pattern (19 bp):
TACCCGGATCTCAAATCTA
Found at i:23772621 original size:27 final size:27
Alignment explanation
Indices: 23772590--23772646 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
23772580 TGTGTCGAGG
23772590 TAAGTTCATATGTGAATAATGTGTTAT
1 TAAGTTCATATGTGAATAATGTGTTAT
23772617 TAAGTTCATATGTGAATAATGTGTTAT
1 TAAGTTCATATGTGAATAATGTGTTAT
23772644 TAA
1 TAA
23772647 AGCTTACTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.35, C:0.04, G:0.18, T:0.44
Consensus pattern (27 bp):
TAAGTTCATATGTGAATAATGTGTTAT
Found at i:23774202 original size:21 final size:21
Alignment explanation
Indices: 23774162--23774200 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
23774152 ACCTAAATAG
*
23774162 TCACACGGGCGTGTTGCCCTC
1 TCACACGGGCATGTTGCCCTC
23774183 TCACACGGGCATG-TGCCC
1 TCACACGGGCATGTTGCCC
23774201 CTGTGTTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.13, C:0.38, G:0.28, T:0.21
Consensus pattern (21 bp):
TCACACGGGCATGTTGCCCTC
Found at i:23779948 original size:14 final size:14
Alignment explanation
Indices: 23779910--23779952 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
23779900 CAAAATGTAC
23779910 AATATAATTAAA-T
1 AATATAATTAAATT
23779923 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
23779938 AA-ATAATTTAATT
1 AATATAATTAAATT
23779951 AA
1 AA
23779953 CTATTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:23785005 original size:20 final size:20
Alignment explanation
Indices: 23784980--23785017 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
23784970 GTCACTTATA
23784980 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
23785000 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
23785018 TAGTTTCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:23791811 original size:29 final size:31
Alignment explanation
Indices: 23791752--23791811 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
23791742 CTAGTAGCCA
*
23791752 ATATTTTTCATTTATTCACATATTTAACCCC
1 ATATTTTTCATTTATTCACATAGTTAACCCC
23791783 ATATTTTTACATTT-TT-ACA-AGTTAACCCC
1 ATATTTTT-CATTTATTCACATAGTTAACCCC
23791812 TAATTGACAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 9 0.33
30 3 0.11
31 10 0.37
32 5 0.19
ACGTcount: A:0.30, C:0.22, G:0.02, T:0.47
Consensus pattern (31 bp):
ATATTTTTCATTTATTCACATAGTTAACCCC
Found at i:23793382 original size:37 final size:37
Alignment explanation
Indices: 23793332--23793407 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
23793322 ATAGAATGTA
23793332 AAGCCAACATAAATAATTCATGCGTACGTACATCATC
1 AAGCCAACATAAATAATTCATGCGTACGTACATCATC
23793369 AAGCCAACATAAATAATTCATGCGTACGTACATCATC
1 AAGCCAACATAAATAATTCATGCGTACGTACATCATC
23793406 AA
1 AA
23793408 ACATTATTAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.42, C:0.24, G:0.11, T:0.24
Consensus pattern (37 bp):
AAGCCAACATAAATAATTCATGCGTACGTACATCATC
Found at i:23806672 original size:39 final size:40
Alignment explanation
Indices: 23806498--23806700 Score: 266
Period size: 40 Copynumber: 5.1 Consensus size: 40
23806488 TGAATGATAC
* ** *
23806498 CCGGGCTAAGTCCCGAAGGCATTTACGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
23806538 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
23806578 CCGGGCTAAGACCCGAAGGCATTTGTACGATTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
23806618 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTAT-C
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
23806657 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
23806697 CCGG
1 CCGG
23806701 TTAAATTCCG
Statistics
Matches: 144, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
39 32 0.22
40 110 0.76
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:23813019 original size:53 final size:53
Alignment explanation
Indices: 23812939--23813051 Score: 217
Period size: 53 Copynumber: 2.1 Consensus size: 53
23812929 TTTAAAATTT
*
23812939 ATTTTGATGCCTATAATATGTGTTAACTCATGTGTGACATTTTTGATGTTTTG
1 ATTTAGATGCCTATAATATGTGTTAACTCATGTGTGACATTTTTGATGTTTTG
23812992 ATTTAGATGCCTATAATATGTGTTAACTCATGTGTGACATTTTTGATGTTTTG
1 ATTTAGATGCCTATAATATGTGTTAACTCATGTGTGACATTTTTGATGTTTTG
23813045 ATTTAGA
1 ATTTAGA
23813052 GTTATAAATG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 59 1.00
ACGTcount: A:0.25, C:0.09, G:0.19, T:0.48
Consensus pattern (53 bp):
ATTTAGATGCCTATAATATGTGTTAACTCATGTGTGACATTTTTGATGTTTTG
Found at i:23814712 original size:40 final size:39
Alignment explanation
Indices: 23814657--23814860 Score: 255
Period size: 40 Copynumber: 5.1 Consensus size: 39
23814647 TGAATGATAC
* ** *
23814657 CCGGGCTAAGTCCCGAAGGCATTTACGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATAT
*
23814697 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
*
23814737 CCGGGCTAAGACCCGAAGGCATTTGTGCGATTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGTTATAT
* *
23814777 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
* * **
23814817 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-GTTATAT
23814857 CCGG
1 CCGG
23814861 TTAAATTCCG
Statistics
Matches: 144, Mismatches: 16, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 142 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
Found at i:23828201 original size:45 final size:45
Alignment explanation
Indices: 23828098--23828314 Score: 291
Period size: 45 Copynumber: 4.9 Consensus size: 45
23828088 TCGAATTCAT
* * *
23828098 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* * *
23828140 TCACCAGCATTATAGCCTGCTAGGCTCGAAA-GCCCAAATAGTATG
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
*
23828185 TCACCGGCATTGTAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* **
23828230 TTACTAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
23828275 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
23828315 ATCAAATCCA
Statistics
Matches: 153, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
42 10 0.07
43 14 0.09
44 7 0.05
45 121 0.79
46 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:23832463 original size:30 final size:30
Alignment explanation
Indices: 23832427--23832485 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
23832417 TTCATATTTC
23832427 ATATTTCATAACACTGGGCCGAAGCCTTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTTT
**
23832457 ATATTTCATATTACTGGGCCGAAGCCTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTT
23832486 ACTGTAAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (30 bp):
ATATTTCATAACACTGGGCCGAAGCCTTTT
Found at i:23832749 original size:24 final size:24
Alignment explanation
Indices: 23832677--23832819 Score: 213
Period size: 24 Copynumber: 6.0 Consensus size: 24
23832667 GCTTTATCAT
*
23832677 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
23832702 ATAACTGGGGCA-AAG-CCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
23832724 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
23832748 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
23832772 ATAACT-GGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
23832796 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
23832820 CACTTCCTCC
Statistics
Matches: 110, Mismatches: 3, Indels: 11
0.89 0.02 0.09
Matches are distributed among these distances:
22 18 0.16
23 19 0.17
24 50 0.45
25 23 0.21
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:23832876 original size:20 final size:20
Alignment explanation
Indices: 23832851--23832896 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
23832841 AACCCAATAC
23832851 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
23832871 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
23832891 A-CATGT
1 ATCATGT
23832897 TTACTAAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:23840474 original size:30 final size:31
Alignment explanation
Indices: 23840422--23840480 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
23840412 TTCATATTTC
23840422 ATATTTCATAACACTGGGCCGAAGCCTTTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTTTT
**
23840453 ATATTTCATATTACT-GGCCGAAGCCTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTT
23840481 ACTGTAAACG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 13 0.50
31 13 0.50
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.37
Consensus pattern (31 bp):
ATATTTCATAACACTGGGCCGAAGCCTTTTT
Found at i:23840600 original size:24 final size:24
Alignment explanation
Indices: 23840549--23840621 Score: 112
Period size: 24 Copynumber: 3.0 Consensus size: 24
23840539 GCTTTATCAT
*
23840549 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
23840574 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
23840598 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
23840622 CACTTCCTCC
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
24 34 0.74
25 12 0.26
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:23840695 original size:20 final size:20
Alignment explanation
Indices: 23840670--23840716 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
23840660 TTATGAATAC
23840670 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
23840690 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
23840710 ACCATGT
1 ATCATGT
23840717 TTACTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:23846290 original size:15 final size:15
Alignment explanation
Indices: 23846270--23846299 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23846260 TTCACTATTA
*
23846270 TGTCTTTTATATTTT
1 TGTCTTTCATATTTT
23846285 TGTCTTTCATATTTT
1 TGTCTTTCATATTTT
23846300 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.10, G:0.07, T:0.70
Consensus pattern (15 bp):
TGTCTTTCATATTTT
Found at i:23847468 original size:16 final size:15
Alignment explanation
Indices: 23847441--23847470 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
23847431 TTGATGAAGT
23847441 AAAATTAAATTAATC
1 AAAATTAAATTAATC
23847456 AAAATTAAAATTAAT
1 AAAATT-AAATTAAT
23847471 ATGATATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (15 bp):
AAAATTAAATTAATC
Found at i:23856913 original size:40 final size:40
Alignment explanation
Indices: 23856856--23857053 Score: 267
Period size: 40 Copynumber: 5.0 Consensus size: 40
23856846 TTGAATGATG
* * *
23856856 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
23856896 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
23856936 TCAGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
23856976 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** * * *
23857016 TCCGGGTTAAG-TCCCGAAGGCCTTTATGCGAGCTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
23857054 TAACCGGGCT
Statistics
Matches: 145, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 136 0.94
41 8 0.06
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23857061 original size:40 final size:40
Alignment explanation
Indices: 23856856--23857081 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
23856846 TTGAATGATG
* *
23856856 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
23856896 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
23856936 TCAGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23856976 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
23857016 TCCGGGTTAAGTCCCGAAGGCCTTTATGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
23857057 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23857082 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 156 0.93
41 10 0.06
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23865025 original size:39 final size:38
Alignment explanation
Indices: 23864938--23865090 Score: 213
Period size: 39 Copynumber: 4.0 Consensus size: 38
23864928 TCGAATGATG
* *
23864938 TCCGGGCTAAGTCCCGAAGGC-TTT-TGCTAAGTGACTAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAA
*
23864976 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAA
23865015 TCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACT-AA
23865055 TCC-GGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA
23865091 TGGTAATCCG
Statistics
Matches: 107, Mismatches: 4, Indels: 9
0.89 0.03 0.08
Matches are distributed among these distances:
37 1 0.01
38 43 0.40
39 55 0.51
40 8 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (38 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:23865069 original size:77 final size:77
Alignment explanation
Indices: 23864938--23865090 Score: 224
Period size: 77 Copynumber: 2.0 Consensus size: 77
23864928 TCGAATGATG
23864938 TCCGGGCTAAGTCCCGAAGGCTTTTGCTAAGTGACTAATCCGGACTAAGATCCGAAGGCATTTGT
1 TCCGGGCTAAGTCCCGAAGGCTTTTGCTAAGTGACTAATCCGGACTAAGATCCGAAGGCATTTGT
23865003 GCGAGTTACTAA
66 GCGAGTTACTAA
* *
23865015 TCCGGGCTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGG-CTAAG-TCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGC-TTT-TGCTAAGTGACT-AATCCGGACTAAGATCCGAAGGCAT
23865076 TTGTGCGAGTTACTA
62 TTGTGCGAGTTACTA
23865091 TGGTAATCCG
Statistics
Matches: 70, Mismatches: 2, Indels: 8
0.88 0.03 0.10
Matches are distributed among these distances:
77 45 0.64
78 15 0.21
79 10 0.14
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (77 bp):
TCCGGGCTAAGTCCCGAAGGCTTTTGCTAAGTGACTAATCCGGACTAAGATCCGAAGGCATTTGT
GCGAGTTACTAA
Found at i:23873218 original size:40 final size:40
Alignment explanation
Indices: 23872999--23873196 Score: 267
Period size: 40 Copynumber: 5.0 Consensus size: 40
23872989 TTGAATGATG
* * *
23872999 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
23873039 TCTGGACTAAGATCCGAAGGCTTTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
23873079 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
23873119 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** * *
23873159 TCCGGGTTAAG-TCCCGAAGGCCTTTGTGCGAGCTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
23873197 TAACCGGGCT
Statistics
Matches: 145, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 136 0.94
41 8 0.06
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23873224 original size:80 final size:80
Alignment explanation
Indices: 23872999--23873224 Score: 250
Period size: 80 Copynumber: 2.8 Consensus size: 80
23872989 TTGAATGATG
* * *
23872999 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAG-TGACTAAATCTGGACTAAGATCCGAAGGCT
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGCT-ACTAAATCCGGACTAAGATCCGAAGG-T
23873061 -TTTGTGCGAGTTACTAAA
62 ATTTGTGCGAGTTACTAAA
* *
23873079 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGTATTT
23873144 GTGCGAGTTACTAAA
66 GTGCGAGTTACTAAA
** * * *
23873159 TCCGGGTTAAG-TCCCGAAGGCCTTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGTA
23873221 TTTG
63 TTTG
23873225 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
79 2 0.02
80 115 0.90
81 11 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGTATTT
GTGCGAGTTACTAAA
Found at i:23873231 original size:80 final size:80
Alignment explanation
Indices: 23872999--23873257 Score: 239
Period size: 80 Copynumber: 3.2 Consensus size: 80
23872989 TTGAATGATG
* * * *
23872999 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAG-TGACTAAATCTGGACTAAGATCCGAAGGCT
1 TCCGGGTTAAGAT-CCGAAGGCATTTGTGC-GAGCT-ACTAAATCCGGACTAAGATCCGAAGGCA
**
23873061 TTTGTGCGAGTTACTAAA
63 TTTGAACGAGTTACTAAA
** *
23873079 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTT
**
23873144 GTGCGAGTTACTAAA
66 GAACGAGTTACTAAA
* * * *
23873159 TCCGGGTTAAG-TCCCGAAGGCCTTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTA
1 TCCGGGTTAAGAT-CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCA
*
23873221 TTTGAACGAG-TAGCTATA
63 TTTGAACGAGTTA-CTAAA
23873239 TCC-GGTTAA-ACTCCGAAGG
1 TCCGGGTTAAGA-TCCGAAGG
23873258 TACGTGATTC
Statistics
Matches: 156, Mismatches: 14, Indels: 19
0.83 0.07 0.10
Matches are distributed among these distances:
79 17 0.11
80 128 0.82
81 11 0.07
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTT
GAACGAGTTACTAAA
Found at i:23873243 original size:120 final size:120
Alignment explanation
Indices: 23872999--23873231 Score: 269
Period size: 120 Copynumber: 1.9 Consensus size: 120
23872989 TTGAATGATG
* * *
23872999 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCTGGACTAAGATCCGAAGGCTTTT
1 TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCCTTT
* **
23873064 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
* * **
23873119 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCC
1 TCCGGACTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCC
* * *
23873181 TTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGT
63 TTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGT
23873232 AGCTATATCC
Statistics
Matches: 95, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
119 2 0.02
120 83 0.87
121 10 0.11
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCCTTT
GTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
Found at i:23877552 original size:21 final size:21
Alignment explanation
Indices: 23877527--23877595 Score: 102
Period size: 21 Copynumber: 3.3 Consensus size: 21
23877517 TGTGGTCCAA
*
23877527 GGGACTCGCCTGTGTGACCCT
1 GGGACACGCCTGTGTGACCCT
23877548 GGGACACGCCTGTGTGACCCT
1 GGGACACGCCTGTGTGACCCT
* * *
23877569 AGGACACACCTGTGTGACCTT
1 GGGACACGCCTGTGTGACCCT
23877590 GGGACA
1 GGGACA
23877596 TGCCCTTGTT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.20
Consensus pattern (21 bp):
GGGACACGCCTGTGTGACCCT
Found at i:23883078 original size:40 final size:40
Alignment explanation
Indices: 23883001--23883262 Score: 384
Period size: 40 Copynumber: 6.6 Consensus size: 40
23882991 AAACCAAGTA
* * *
23883001 CCTTCGGGAATTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
23883040 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
23883080 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * * *
23883120 CCTTTGAGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
23883160 CCTTCGGGACTTAGCTCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
23883200 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
23883240 CCTTCAGGACTTAGCCCGATTAT
1 CCTTCGGGACTTAGCCCGGTTAT
23883263 CATCTGAATA
Statistics
Matches: 203, Mismatches: 18, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
39 14 0.07
40 189 0.93
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:23903587 original size:41 final size:40
Alignment explanation
Indices: 23903486--23903677 Score: 285
Period size: 40 Copynumber: 4.8 Consensus size: 40
23903476 AGCAAATCGG
* * *
23903486 ACAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGC
1 ACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGC
*
23903526 ACAAATGCCTTCGGGACTTAGCCCAGATATAGTCACTAGC
1 ACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGC
* *
23903566 ACAAAATGCCTTCGGGTCTTAGCCCGGATATCGTCACTAGC
1 AC-AAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGC
*
23903607 GCAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGC
1 ACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGC
**
23903647 ACAAAGTGCCTTCGGGTTTTAGCCCGGATAT
1 ACAAA-TGCCTTCGGGACTTAGCCCGGATAT
23903678 CATCCGAATA
Statistics
Matches: 137, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
40 78 0.57
41 59 0.43
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
ACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGC
Found at i:23903587 original size:81 final size:81
Alignment explanation
Indices: 23903488--23903677 Score: 299
Period size: 81 Copynumber: 2.3 Consensus size: 81
23903478 CAAATCGGAC
* * *
23903488 AAATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGA
1 AAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCAGA
23903553 TATAGTCACTAGCACA
66 TATAGTCACTAGCACA
* * * *
23903569 AAATGCCTTCGGGTCTTAGCCCGGATATCGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCAGA
23903634 TATAGTCACTAGCACA
66 TATAGTCACTAGCACA
* *
23903650 AAGTGCCTTCGGGTTTTAGCCCGGATAT
1 AAATGCCTTCGGGTCTTAGCCCGGATAT
23903678 CATCCGAATA
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 100 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
AAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCAGA
TATAGTCACTAGCACA
Found at i:23907167 original size:13 final size:14
Alignment explanation
Indices: 23907144--23907172 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
23907134 GGATGTGACA
23907144 TTTAGGTTTTTATT
1 TTTAGGTTTTTATT
23907158 TTTA-GTTTTTATT
1 TTTAGGTTTTTATT
23907171 TT
1 TT
23907173 ATTTCAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.14, C:0.00, G:0.10, T:0.76
Consensus pattern (14 bp):
TTTAGGTTTTTATT
Found at i:23920893 original size:37 final size:37
Alignment explanation
Indices: 23920852--23920928 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
23920842 TAGTTTGGGG
* *
23920852 CTTACCCGGACAAAATCTCCACCCGTGGTCATCGGGT
1 CTTACCCGGACAAAATCTCCACACGTAGTCATCGGGT
*
23920889 CTTACCCGGACATAATCTCCACACGTAGTCATCGGGT
1 CTTACCCGGACAAAATCTCCACACGTAGTCATCGGGT
23920926 CTT
1 CTT
23920929 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.22, C:0.34, G:0.19, T:0.25
Consensus pattern (37 bp):
CTTACCCGGACAAAATCTCCACACGTAGTCATCGGGT
Found at i:23921115 original size:47 final size:47
Alignment explanation
Indices: 23921046--23922000 Score: 1617
Period size: 47 Copynumber: 20.3 Consensus size: 47
23921036 CCCTTCGGGA
* * * * *
23921046 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23921093 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
23921140 CTTATCACATATATGCACTTCCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23921187 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
23921234 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23921281 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23921328 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23921375 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23921422 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23921469 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23921516 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23921563 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23921610 CTTATCACATATATCCACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23921657 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23921704 CTTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
23921751 CTTATCACATATATGCACTTTCACATTCATCACTTTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
23921798 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23921845 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23921892 CTTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23921939 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
23921986 CTTATCACATATATA
1 CTTATCACATATATA
23922001 TATATCTCAT
Statistics
Matches: 861, Mismatches: 44, Indels: 6
0.95 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 858 1.00
48 2 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23921124 original size:25 final size:25
Alignment explanation
Indices: 23921096--23921174 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
23921086 ACTCGGCCTT
23921096 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
*** ** *
23921121 ATCACAT-TGGCCA-TTTGGCCTT-
1 ATCACATATATACACTTTCACATTC
* *
23921143 ATCACATATATGCACTTCCACATTC
1 ATCACATATATACACTTTCACATTC
23921168 ATCACAT
1 ATCACAT
23921175 GGGCCATTAG
Statistics
Matches: 38, Mismatches: 13, Indels: 6
0.67 0.23 0.11
Matches are distributed among these distances:
22 7 0.18
23 9 0.24
24 8 0.21
25 14 0.37
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:23926576 original size:93 final size:93
Alignment explanation
Indices: 23926464--23926635 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
23926454 GCCCATAAGT
* *
23926464 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23926529 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
23926557 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23926622 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
23926636 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:23926631 original size:46 final size:46
Alignment explanation
Indices: 23926456--23926631 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
23926446 TGTAACCCGC
* * *
23926456 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
23926502 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
23926552 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
23926595 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
23926632 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:23929053 original size:29 final size:29
Alignment explanation
Indices: 23929014--23929101 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
23929004 CAAAGATAAC
*
23929014 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
23929043 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
23929072 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
23929102 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:23929072 original size:15 final size:15
Alignment explanation
Indices: 23929014--23929092 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
23929004 CAAAGATAAC
*
23929014 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
23929028 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
23929043 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
23929057 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
23929072 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
23929087 AAGAAA
1 AAGAAA
23929093 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:23929101 original size:15 final size:15
Alignment explanation
Indices: 23929025--23929101 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
23929015 AGAAAACCGA
23929025 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
23929040 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
23929054 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
23929068 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
23929084 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
23929099 ATA
1 ATA
23929102 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:23932156 original size:93 final size:93
Alignment explanation
Indices: 23932044--23932215 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
23932034 GCCCATAAGT
* *
23932044 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23932109 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
23932137 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23932202 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
23932216 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:23932211 original size:46 final size:46
Alignment explanation
Indices: 23932036--23932211 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
23932026 TGTAACCCGC
* * *
23932036 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
23932082 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
23932132 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
23932175 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
23932212 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:23934286 original size:84 final size:84
Alignment explanation
Indices: 23934140--23934298 Score: 214
Period size: 84 Copynumber: 1.9 Consensus size: 84
23934130 CACATATATC
* ** *
23934140 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGGAATCACATATCAATGCCACTGTCCCAGAC
1 ATACAATGCCAACGTCCCAGACATGGTCTTACACAGAATCACATATCAATGCCACTATCCCAGA-
23934205 A-TGGTCTTACACGAATCAA
65 AGTGGTCTTACACGAATCAA
* * * *
23934224 ATACGATGCCAATGTCCCAGACATGGTCTTACACATAATCACATATCGATGCCAAC-ATCCCAGA
1 ATACAATGCCAACGTCCCAGACATGGTCTTACACAGAATCACATATCAATGCC-ACTATCCCAGA
23934288 AGTGGTCTTAC
65 AGTGGTCTTAC
23934299 TCGAGAACAC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
83 1 0.02
84 62 0.95
85 2 0.03
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.23
Consensus pattern (84 bp):
ATACAATGCCAACGTCCCAGACATGGTCTTACACAGAATCACATATCAATGCCACTATCCCAGAA
GTGGTCTTACACGAATCAA
Found at i:23934310 original size:43 final size:44
Alignment explanation
Indices: 23934145--23934311 Score: 188
Period size: 43 Copynumber: 3.9 Consensus size: 44
23934135 ATATCATACA
* * *
23934145 ATGCCAACGTCCCAGACGTGGTCTTACATG-GAATCACATATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGAGAATCACATATCG
*
23934188 ATGCC-ACTGTCCCAGACATGGTCTTACAC--GAATCAAATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAGAATCACATATCG
* *
23934229 ATGCCAATGTCCCAGACATGGTCTTACAC-ATAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAGAATCACATATCG
* *
23934272 ATGCCAACATCCCAGA-AGTGGTCTTACTCGAGAA-CACATA
1 ATGCCAACGTCCCAGACA-TGGTCTTACACGAGAATCACATA
23934312 CCGAAAATCC
Statistics
Matches: 107, Mismatches: 11, Indels: 12
0.82 0.08 0.09
Matches are distributed among these distances:
41 27 0.25
42 21 0.20
43 56 0.52
44 3 0.03
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAGAATCACATATCG
Found at i:23939104 original size:27 final size:27
Alignment explanation
Indices: 23939074--23939216 Score: 153
Period size: 27 Copynumber: 5.3 Consensus size: 27
23939064 TATTTACTTA
23939074 AAAATGACCGAAATACCCCCATAGGGT
1 AAAATGACCGAAATACCCCCATAGGGT
**
23939101 AAAATGACCGAAATACCCATATAGGGT
1 AAAATGACCGAAATACCCCCATAGGGT
** *
23939128 AAAATGACAAAAATACCCTCATAGGGT
1 AAAATGACCGAAATACCCCCATAGGGT
* *
23939155 AAAATGATCGAAATA-CCCCAGTAGGAT
1 AAAATGACCGAAATACCCCCA-TAGGGT
** * ** *
23939182 AAAATGATTGTAATACCCCTGTAAGGT
1 AAAATGACCGAAATACCCCCATAGGGT
23939209 AAAATGAC
1 AAAATGAC
23939217 TATTTTGCCT
Statistics
Matches: 96, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
26 4 0.04
27 89 0.93
28 3 0.03
ACGTcount: A:0.44, C:0.19, G:0.17, T:0.20
Consensus pattern (27 bp):
AAAATGACCGAAATACCCCCATAGGGT
Found at i:23939236 original size:27 final size:26
Alignment explanation
Indices: 23939206--23939332 Score: 116
Period size: 27 Copynumber: 4.8 Consensus size: 26
23939196 ACCCCTGTAA
23939206 GGTAAAATGACTATTTTGCCTTCATGT
1 GGTAAAATGACTATTTTGCCTT-ATGT
*
23939233 GGTAAAATGAC-AGTTTTGCCCTCATGT
1 GGTAAAATGACTA-TTTTG-CCTTATGT
*
23939260 GGCAAAATGA-TAGTTTTGCCCTTATGT
1 GGTAAAATGACTA-TTTTG-CCTTATGT
** *
23939287 GGT-AAATGACTAATTTACCCTTAGGT
1 GGTAAAATGACT-ATTTTGCCTTATGT
* *
23939313 GGTAAGATGACTGTTTTGCC
1 GGTAAAATGACTATTTTGCC
23939333 CCAACGTGAT
Statistics
Matches: 83, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
26 22 0.27
27 57 0.69
28 4 0.05
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (26 bp):
GGTAAAATGACTATTTTGCCTTATGT
Found at i:23939333 original size:53 final size:55
Alignment explanation
Indices: 23939206--23939333 Score: 140
Period size: 53 Copynumber: 2.4 Consensus size: 55
23939196 ACCCCTGTAA
* * * *
23939206 GGTAAAATGACTATTTTG-CCTTCATGTGGTAAAATGACAGTTTTGCCCTCATGT
1 GGTAAAATGACTGTTTTGCCCTTCATGTGGTAAAATGACAGATTTACCCTCAGGT
* *
23939260 GGCAAAATGA-TAGTTTTGCCCTT-ATGTGGT-AAATGACTA-ATTTACCCTTAGGT
1 GGTAAAATGACT-GTTTTGCCCTTCATGTGGTAAAATGAC-AGATTTACCCTCAGGT
*
23939313 GGTAAGATGACTGTTTTGCCC
1 GGTAAAATGACTGTTTTGCCC
23939334 CAACGTGATG
Statistics
Matches: 62, Mismatches: 8, Indels: 9
0.78 0.10 0.11
Matches are distributed among these distances:
53 35 0.56
54 23 0.37
55 4 0.06
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (55 bp):
GGTAAAATGACTGTTTTGCCCTTCATGTGGTAAAATGACAGATTTACCCTCAGGT
Found at i:23944037 original size:2 final size:2
Alignment explanation
Indices: 23944030--23944054 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
23944020 AAGTTCAATC
23944030 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
23944055 ACATTAGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23946057 original size:39 final size:39
Alignment explanation
Indices: 23945979--23946141 Score: 247
Period size: 39 Copynumber: 4.2 Consensus size: 39
23945969 TATGGTAGCC
* *
23945979 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
23946019 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
23946058 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* * *
23946097 CGCAGC-GTTGCCTTCGGGTTTAGCCTGGATATCACAACT
1 CGCA-CAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
23946136 CGCACA
1 CGCACA
23946142 TTTATACACA
Statistics
Matches: 114, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 95 0.83
40 18 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:23953365 original size:39 final size:39
Alignment explanation
Indices: 23953284--23953446 Score: 272
Period size: 39 Copynumber: 4.2 Consensus size: 39
23953274 TATGGTAACC
* *
23953284 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
23953324 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
23953363 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
23953402 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
23953441 CGCACA
1 CGCACA
23953447 TTCATACATC
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:23961312 original size:40 final size:40
Alignment explanation
Indices: 23961249--23961437 Score: 208
Period size: 39 Copynumber: 4.8 Consensus size: 40
23961239 GCTACTCGTT
* * ***
23961249 CAAA-GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
23961288 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
23961328 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * *
23961367 CCATTGCCTTC-GG-CTTAGCCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
23961405 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
23961438 TTCGCACATT
Statistics
Matches: 133, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
38 35 0.26
39 57 0.43
40 41 0.31
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:23961391 original size:38 final size:39
Alignment explanation
Indices: 23961284--23961445 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
23961274 TATGGTAACC
* *
23961284 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
23961324 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
23961363 CGCACCATTGCCTTC-GGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
23961401 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
23961440 CGCACA
1 CGCACA
23961446 TTCATACACA
Statistics
Matches: 112, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
38 35 0.31
39 60 0.54
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:23961443 original size:77 final size:79
Alignment explanation
Indices: 23961292--23961444 Score: 256
Period size: 77 Copynumber: 2.0 Consensus size: 79
23961282 CCCGCACAAA
23961292 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
* *
23961357 ATAGCTCGCACCAT
66 ACAACTCGCACCAT
*
23961371 TGCCTTC-GG-CTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
*
23961434 ACAATTCGCAC
66 ACAACTCGCAC
23961445 ATTCATACAC
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 61 0.87
78 2 0.03
79 7 0.10
ACGTcount: A:0.22, C:0.33, G:0.20, T:0.24
Consensus pattern (79 bp):
TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
ACAACTCGCACCAT
Found at i:23966017 original size:2 final size:2
Alignment explanation
Indices: 23966010--23966038 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
23966000 AAGTTCAATC
23966010 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23966039 ACATTAGCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23968048 original size:39 final size:39
Alignment explanation
Indices: 23967964--23968126 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
23967954 TATGGTAGCC
* * *
23967964 CGCACAAATGCCTTCGGGACTTAACTCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
23968004 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
23968043 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAAAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
**
23968082 CATACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
23968121 CGCACA
1 CGCACA
23968127 TTTATACACA
Statistics
Matches: 110, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 94 0.85
40 16 0.15
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:23970924 original size:41 final size:43
Alignment explanation
Indices: 23970826--23970978 Score: 161
Period size: 43 Copynumber: 3.6 Consensus size: 43
23970816 ATATCGTACA
** * * *
23970826 ATGCCAACATCCCAGACGTGGTCTT--ACGTGCAATCACATATTG
1 ATGCCAATGTCCCAGACATGGTCTTAAACGT--AATCAAATATCG
* *
23970869 ATGCCACTGTCCCAGACAGGGTCTTAAACG-AATCAAATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTAAACGTAATCAAATATCG
* * *
23970910 ATGCCAATGTCCCAGGCATGGTCTTACACGTAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTAAACGTAATCAAATATCG
*
23970953 ATGCCAATGTCCCAAACATGGTCTTA
1 ATGCCAATGTCCCAGACATGGTCTTA
23970979 CTTGAACACA
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
41 27 0.29
42 16 0.17
43 46 0.50
45 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTAAACGTAATCAAATATCG
Found at i:23970991 original size:43 final size:43
Alignment explanation
Indices: 23970860--23970993 Score: 141
Period size: 43 Copynumber: 3.2 Consensus size: 43
23970850 TACGTGCAAT
* * * *
23970860 CACATATTGATGCCACTGTCCCAGACAGGGTCTTAAACGAATCA
1 CACATATCGATGCCAATGTCCCAGACATGGTCTTACACGAA-CA
* *
23970904 -A-ATA-CGATGCCAATGTCCCAGGCATGGTCTTACACGTAA-T
1 CACATATCGATGCCAATGTCCCAGACATGGTCTTACACG-AACA
* **
23970944 CACATATCGATGCCAATGTCCCAAACATGGTCTTACTTGAACA
1 CACATATCGATGCCAATGTCCCAGACATGGTCTTACACGAACA
23970987 CACATAT
1 CACATAT
23970994 AAAAAATTCT
Statistics
Matches: 74, Mismatches: 11, Indels: 11
0.77 0.11 0.11
Matches are distributed among these distances:
41 28 0.38
42 10 0.14
43 36 0.49
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
CACATATCGATGCCAATGTCCCAGACATGGTCTTACACGAACA
Found at i:23972523 original size:37 final size:37
Alignment explanation
Indices: 23972465--23972609 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
23972455 GCTCAGACGA
* *
23972465 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
23972502 ACTCTCCACACGTAGTCATCGGGTCTTACCAGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
23972539 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
23972576 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
23972610 ATATATTTCC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:23972725 original size:48 final size:48
Alignment explanation
Indices: 23972654--23973036 Score: 595
Period size: 48 Copynumber: 8.0 Consensus size: 48
23972644 TGTTACAACA
* * * *
23972654 TTCACATTAGCCTTTCGGCTTTACCACATATGCATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
23972702 TTCACATTAGCCATTCGACTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
23972750 TTCACATTAGCCATTCGGCTTTATCACATATACACATCTCAGATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
23972798 TTCACATTGGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
23972846 TTTACATTAGCCATTCGGCTTTACCACATATACATATCTCAGATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
23972894 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * * *
23972942 TTCACATTAGCCATTCGGCTTTATCTCATATACACATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
23972990 TTCACATTGGCCATTCGGCTTTACCACATATACATATCACACATATA
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATA
23973037 CACATATACA
Statistics
Matches: 302, Mismatches: 33, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 302 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:23973034 original size:15 final size:14
Alignment explanation
Indices: 23973015--23973059 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
23973005 CGGCTTTACC
* *
23973015 ACATATACATATCAC
1 ACATATACACAT-AT
23973030 ACATATACACATAT
1 ACATATACACATAT
23973044 ACATATCACACATAT
1 ACATAT-ACACATAT
23973059 A
1 A
23973060 TTTTACATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 7 0.26
15 20 0.74
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (14 bp):
ACATATACACATAT
Found at i:23973044 original size:23 final size:23
Alignment explanation
Indices: 23973014--23973059 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
23973004 TCGGCTTTAC
23973014 CACATATACATATCACACATATA
1 CACATATACATATCACACATATA
23973037 CACATATACATATCACACATATA
1 CACATATACATATCACACATATA
23973060 TTTTACATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (23 bp):
CACATATACATATCACACATATA
Found at i:23973068 original size:119 final size:119
Alignment explanation
Indices: 23972918--23973154 Score: 465
Period size: 119 Copynumber: 2.0 Consensus size: 119
23972908 TCGGCTTTAC
23972918 CACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTATCTCATATACACATCTCA
1 CACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTATCTCATATACACATCTCA
23972983 TATATATTTCACATTGGCCATTCGGCTTTACCACATATACATATCACACATATA
66 TATATATTTCACATTGGCCATTCGGCTTTACCACATATACATATCACACATATA
*
23973037 CACATATACATATCACACATATATTTTACATTAGCCATTCGGCTTTATCTCATATACACATCTCA
1 CACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTATCTCATATACACATCTCA
23973102 TATATATTTCACATTGGCCATTCGGCTTTACCACATATACATATCACACATAT
66 TATATATTTCACATTGGCCATTCGGCTTTACCACATATACATATCACACATAT
23973155 GCATGCTCAC
Statistics
Matches: 117, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
119 117 1.00
ACGTcount: A:0.33, C:0.26, G:0.06, T:0.35
Consensus pattern (119 bp):
CACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTATCTCATATACACATCTCA
TATATATTTCACATTGGCCATTCGGCTTTACCACATATACATATCACACATATA
Found at i:23973107 original size:48 final size:48
Alignment explanation
Indices: 23973037--23973154 Score: 164
Period size: 48 Copynumber: 2.5 Consensus size: 48
23973027 CACACATATA
* * *
23973037 CACATATACATATCACACATATATTTTACATTAGCCATTCGGCTTTAT
1 CACATATACACATCACACATATATTTCACATTAGCCATTCGGCTTTAC
* * * *
23973085 CTCATATACACATCTCATATATATTTCACATTGGCCATTCGGCTTTAC
1 CACATATACACATCACACATATATTTCACATTAGCCATTCGGCTTTAC
*
23973133 CACATATACATATCACACATAT
1 CACATATACACATCACACATAT
23973155 GCATGCTCAC
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (48 bp):
CACATATACACATCACACATATATTTCACATTAGCCATTCGGCTTTAC
Found at i:23973107 original size:71 final size:71
Alignment explanation
Indices: 23972968--23973107 Score: 190
Period size: 71 Copynumber: 2.0 Consensus size: 71
23972958 GGCTTTATCT
* * * *
23972968 CATATACACATCTCATATATATTTCACATTGGCCATTCGGCTTTACCACATATACATATCACACA
1 CATATACACATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACACATCACACA
23973033 TATACA
66 TATACA
* * * * * *
23973039 CATATACATATCACACATATATTTTACATTAGCCATTCGGCTTTATCTCATATACACATCTCATA
1 CATATACACATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACACATCACACA
23973104 TATA
66 TATA
23973108 TTTCACATTG
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
71 59 1.00
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (71 bp):
CATATACACATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACACATCACACA
TATACA
Found at i:23977704 original size:39 final size:40
Alignment explanation
Indices: 23977526--23977708 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
23977516 CCGCACCAAG
* * * * * * * *
23977526 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
23977566 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
23977606 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
23977646 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
23977685 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
23977709 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:23985712 original size:39 final size:40
Alignment explanation
Indices: 23985534--23985716 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
23985524 CCCGCACAAG
* * * * * * * *
23985534 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
23985574 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
23985614 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
23985654 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
23985693 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
23985717 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:23993727 original size:39 final size:40
Alignment explanation
Indices: 23993549--23993731 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
23993539 CCGCACCAAG
* * * * * * * *
23993549 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
23993589 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
23993629 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
23993669 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
23993708 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
23993732 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:23996830 original size:93 final size:93
Alignment explanation
Indices: 23996718--23996888 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
23996708 GCCCATAAGT
* * *
23996718 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23996783 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
23996811 GAACTCGGACTCAACTCAACGAGTTCAGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23996876 CGAGTTCGGATGC
66 CGAGTTCGGATGC
23996889 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:23996904 original size:46 final size:46
Alignment explanation
Indices: 23996710--23996890 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
23996700 TGTAACCCGC
* * *
23996710 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
23996756 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* * *
23996806 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
23996849 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
23996891 AACCATCCTA
Statistics
Matches: 114, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 71 0.62
47 31 0.27
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:24001922 original size:24 final size:24
Alignment explanation
Indices: 24001858--24001923 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
24001848 TATCCATTAA
*
24001858 ATAATAATAA-TAATTATAAAACC
1 ATAATAATAATTAAATATAAAACC
**
24001881 ATAATAATAATTTTATATAAAACC
1 ATAATAATAATTAAATATAAAACC
**
24001905 ATGGTAATAATTAAATATA
1 ATAATAATAATTAAATATA
24001924 TATAATACAT
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
23 10 0.29
24 25 0.71
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.35
Consensus pattern (24 bp):
ATAATAATAATTAAATATAAAACC
Found at i:24008102 original size:37 final size:37
Alignment explanation
Indices: 24008052--24008179 Score: 238
Period size: 37 Copynumber: 3.4 Consensus size: 37
24008042 TTATTACGAA
24008052 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
24008089 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
24008126 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
24008163 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
24008180 TTTCCAAGTT
Statistics
Matches: 89, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
37 84 0.94
38 5 0.06
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:24008277 original size:48 final size:48
Alignment explanation
Indices: 24008218--24008417 Score: 364
Period size: 48 Copynumber: 4.2 Consensus size: 48
24008208 TGTTACAACA
*
24008218 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
24008266 TTCACATTAGCCATTCGACTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
24008314 TTCACATTAGCCCTTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
24008362 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
24008410 TTCACATT
1 TTCACATT
24008418 CATCACATCG
Statistics
Matches: 146, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 146 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:24008473 original size:66 final size:59
Alignment explanation
Indices: 24008389--24008625 Score: 192
Period size: 49 Copynumber: 4.1 Consensus size: 59
24008379 GCTTTACCAC
*
24008389 ATATACATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATACATACCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
* * * ** ** ** * *
24008448 ATATAGGCTTCACCACATATACATATCACACATATGTTTCACATTAGCCATTCGGCTTTA-C-CA
1 ATATA--CAT-ACCACACAT--ATGTTTCACAT-T-CATCACATCGGCCATTAGGCCTTATCACA
*
24008511 C
59 T
*
24008512 ATATACATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATACATACCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
24008571 ATAT--ATA-CAC-C------TTCACATTCATCACATTGGCCATTAGGCCTTATCACAT
1 ATATACATACCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
24008620 ATATAC
1 ATATAC
24008626 TCTTTCACAT
Statistics
Matches: 140, Mismatches: 27, Indels: 30
0.71 0.14 0.15
Matches are distributed among these distances:
49 41 0.29
55 1 0.01
56 3 0.02
57 21 0.15
58 2 0.01
59 19 0.14
61 9 0.06
62 9 0.06
64 15 0.11
65 2 0.01
66 18 0.13
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.32
Consensus pattern (59 bp):
ATATACATACCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
Found at i:24008473 original size:123 final size:123
Alignment explanation
Indices: 24008330--24008575 Score: 474
Period size: 123 Copynumber: 2.0 Consensus size: 123
24008320 TTAGCCCTTC
*
24008330 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
1 GGCTTCACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
24008395 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
24008453 GGCTTCACCACATATACATATCACACATATGTTTCACATTAGCCATTCGGCTTTACCACATATAC
1 GGCTTCACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
24008518 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
24008576 TACACCTTCA
Statistics
Matches: 121, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 121 1.00
ACGTcount: A:0.32, C:0.27, G:0.09, T:0.32
Consensus pattern (123 bp):
GGCTTCACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:24008588 original size:49 final size:49
Alignment explanation
Indices: 24008532--24008820 Score: 501
Period size: 49 Copynumber: 5.9 Consensus size: 49
24008522 CACACATATG
*
24008532 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* *
24008581 CTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
24008628 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
24008677 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
24008726 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATATACAC
*
24008777 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
24008821 CATCTCATAC
Statistics
Matches: 228, Mismatches: 8, Indels: 8
0.93 0.03 0.03
Matches are distributed among these distances:
47 45 0.20
49 135 0.59
51 48 0.21
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:24008639 original size:96 final size:96
Alignment explanation
Indices: 24008532--24008822 Score: 501
Period size: 96 Copynumber: 3.0 Consensus size: 96
24008522 CACACATATG
* *
24008532 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
24008597 TTGGCCATTAGGCCTTATCACATATATACTC
66 TTGGCCATTAGGCCTTATCACATATATACAC
*
24008628 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
24008693 TTGGCCATTAGGCCTTATCACATATATATACAC
66 TTGGCCATTAGGCCTTATCAC--ATATATACAC
24008726 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATATACACTTTCACATTCATCA
*
24008791 CATTGGCCATTAGGCCGTATCACATATATACA
64 CATTGGCCATTAGGCCTTATCACATATATACA
24008823 TCTCATACAT
Statistics
Matches: 185, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
96 83 0.45
98 55 0.30
100 47 0.25
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (96 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGCCATTAGGCCTTATCACATATATACAC
Found at i:24008681 original size:145 final size:146
Alignment explanation
Indices: 24008532--24008820 Score: 499
Period size: 145 Copynumber: 2.0 Consensus size: 146
24008522 CACACATATG
24008532 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
* *
24008597 TTGGCCATTAGGCCTTATCAC-ATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTA
66 TTGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTA
*
24008661 TCACATGTATATACAC
131 TCACATATATATACAC
* *
24008677 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
24008742 TTGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
66 TTGGCCATTAGGCCTTATCAC--A-ATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
24008807 GTATCACATATATA
128 GTATCACATATATA
24008821 CATCTCATAC
Statistics
Matches: 135, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
145 84 0.62
149 51 0.38
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (146 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TTGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTA
TCACATATATATACAC
Found at i:24012729 original size:55 final size:53
Alignment explanation
Indices: 24012642--24012896 Score: 252
Period size: 55 Copynumber: 4.8 Consensus size: 53
24012632 ATTAGGGTTT
*
24012642 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * * * *
24012697 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATGAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTA--AGGC
* * * *
24012752 AAAGG-TCCCATGTAAGACCATGCCTAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* *
24012805 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
* * * * * *
24012854 AAAGATACCACGTAAGACCATGACAAGTCATAGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
24012897 GTACTCGCGT
Statistics
Matches: 168, Mismatches: 26, Indels: 18
0.79 0.12 0.08
Matches are distributed among these distances:
49 38 0.23
52 6 0.04
53 42 0.25
54 12 0.07
55 66 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:24012848 original size:108 final size:110
Alignment explanation
Indices: 24012649--24012849 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
24012639 TTTAAGGATA
*
24012649 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
24012714 CCATGTCAAGACATGGCATTGATAAGTTACTATGAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATGAGGCAAAGGTC
* * *
24012759 CCATGTAAGACCATGCCTAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
24012821 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
24012850 TCAAAAAGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATGAGGCAAAGGTC
Found at i:24013109 original size:16 final size:16
Alignment explanation
Indices: 24013088--24013118 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24013078 ATAAATTTGA
24013088 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
24013104 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
24013119 AGTGAAGGAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:24018526 original size:43 final size:43
Alignment explanation
Indices: 24018477--24018678 Score: 230
Period size: 43 Copynumber: 4.7 Consensus size: 43
24018467 GGTTACCGAG
*
24018477 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGAATTG-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGAT
24018519 ACTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGA-
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGAT
* * *
24018562 ATTGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGAT
* *** * *
24018606 AAT-CGATTTTGTGTAAGACCCTGTCTGGGACAGTGGCATTGAT
1 -ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGAT
* * * *
24018649 AGGTGATAACATGTATGACCATATCTGGGA
1 ATGTGATTACATGTAAGACCATGTCTGGGA
24018679 TATGGCAGTG
Statistics
Matches: 133, Mismatches: 22, Indels: 9
0.81 0.13 0.05
Matches are distributed among these distances:
42 2 0.02
43 129 0.97
44 1 0.01
45 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGAT
Found at i:24019325 original size:22 final size:22
Alignment explanation
Indices: 24019300--24019341 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
24019290 TTTTTGGATA
*
24019300 CTTGTAAGTTGG-AGTATTATTG
1 CTTGAAAGTTGGCA-TATTATTG
24019322 CTTGAAAGTTGGCATATTAT
1 CTTGAAAGTTGGCATATTAT
24019342 GGTTTGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.26, C:0.07, G:0.24, T:0.43
Consensus pattern (22 bp):
CTTGAAAGTTGGCATATTATTG
Found at i:24019348 original size:22 final size:22
Alignment explanation
Indices: 24019300--24019348 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
24019290 TTTTTGGATA
* *
24019300 CTTGTAAGTTGGAGTATTATTG
1 CTTGAAAGTTGGAGTATTATGG
24019322 CTTGAAAGTTGGCA-TATTATGG
1 CTTGAAAGTTGG-AGTATTATGG
*
24019344 TTTGA
1 CTTGA
24019349 TTTTGAGATG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.24, C:0.06, G:0.27, T:0.43
Consensus pattern (22 bp):
CTTGAAAGTTGGAGTATTATGG
Found at i:24026288 original size:43 final size:43
Alignment explanation
Indices: 24026240--24026431 Score: 235
Period size: 43 Copynumber: 4.5 Consensus size: 43
24026230 GTTACCGAGA
* *
24026240 TGTGATTGCATGTAAGACCATGTCTGGGACATTGCCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
24026283 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * *
24026326 TGTGATTACGTGTAAGACCATGTCTAGGACATTGGCATTGTTAA
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TAT
* * * * * *
24026370 T-TGATTTCGTGTAAGACCCTATCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* *
24026411 AGGTGATAACATGTAAGACCA
1 -TGTGATTACATGTAAGACCA
24026432 CATCTCGGAT
Statistics
Matches: 129, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.01
43 125 0.97
44 3 0.02
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:24029973 original size:140 final size:140
Alignment explanation
Indices: 24029721--24030229 Score: 599
Period size: 140 Copynumber: 3.6 Consensus size: 140
24029711 TTCTAAGACG
* ** * **
24029721 ACACTTTTGTGCCAACACTTTTATAAGTGTTGGGATAGACTTGCCAACATACGCTTTGGCCAACT
1 ACACTTTTGGGCCAACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATATACTTTGGCCAACT
* * * * *
24029786 CTTTATATAAGGGTTGGGATATGTATGCCTAAGTCAACGCTTAAATAAGAGTCAGCTTTGTCCGA
66 CTTTATATAAGGGTTGGGATATGCATGCTTAAGACAACGCTTAAATAAGAGTCGGCTTTGTCCAA
24029851 CACTATGCCA
131 CACTATGCCA
* ** *
24029861 ACACTTTTGGGCCAACACTTTCCTAAGTGTTGGAATAGACTTGTTGACATATACTTTGGCAAACT
1 ACACTTTTGGGCCAACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATATACTTTGGCCAACT
* * * *
24029926 CTTTGTATAAGGGTTGGGATATGCATACTTAAAACAATGCTTAAATAAGAGTCGGCTTTGTCCAA
66 CTTTATATAAGGGTTGGGATATGCATGCTTAAGACAACGCTTAAATAAGAGTCGGCTTTGTCCAA
24029991 CACTATGCCGA
131 CACTATGCC-A
** * * * *
24030002 A-ACTTTTGGGCTGACACTTTCCTAAATGTGGGGATAGACTTGTCGAAATATGA-TTTGGCCAAC
1 ACACTTTTGGGCCAACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATAT-ACTTTGGCCAAC
* * * * * *
24030065 TCTTTATAAAAGGGTTGGGATATGTATGCTTAAGGCGACGCTTAAATAAGAGTCGGTTTTGTCAA
65 TCTTTATATAAGGGTTGGGATATGCATGCTTAAGACAACGCTTAAATAAGAGTCGGCTTTGTCCA
* *
24030130 ACATTATGCCG
130 ACACTATGCCA
* * * * * *
24030141 ACCCTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATATGCCTTGGTCGACT
1 ACACTTTTGGGCCAACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATATACTTTGGCCAACT
* * * *
24030206 CTTTGTATAAAGGTCGGGACATGC
66 CTTTATATAAGGGTTGGGATATGC
24030230 CTTTTCTAAC
Statistics
Matches: 310, Mismatches: 55, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
139 1 0.00
140 306 0.99
141 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (140 bp):
ACACTTTTGGGCCAACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATATACTTTGGCCAACT
CTTTATATAAGGGTTGGGATATGCATGCTTAAGACAACGCTTAAATAAGAGTCGGCTTTGTCCAA
CACTATGCCA
Found at i:24032439 original size:19 final size:18
Alignment explanation
Indices: 24032417--24032456 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
24032407 TGAATAAAAC
24032417 TTATATACCTAAATAAGAT
1 TTATATACCTAAATAA-AT
*
24032436 TTATCTACCTAAATAAAT
1 TTATATACCTAAATAAAT
24032454 TTA
1 TTA
24032457 AAATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.45, C:0.12, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATATACCTAAATAAAT
Found at i:24037111 original size:19 final size:18
Alignment explanation
Indices: 24037089--24037128 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
24037079 TGAATAAAAC
24037089 TTATCTACCTAAATAATAT
1 TTATCTACCTAAATAA-AT
24037108 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
24037126 TTA
1 TTA
24037129 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:24038093 original size:42 final size:42
Alignment explanation
Indices: 24037974--24038095 Score: 145
Period size: 43 Copynumber: 2.9 Consensus size: 42
24037964 ACACATAGTA
* ****
24037974 TCACACCAATGCCATATCCCAGATATGGTCTTACATGGGATC
1 TCACATCAATGCCATATCCCAGATATGGTCTTACACAAAATC
** * *
24038016 TCGTATCAATGCCAATAGCCCAGCTATGGTCTTACACAAAATC
1 TCACATCAATGCC-ATATCCCAGATATGGTCTTACACAAAATC
*
24038059 TCACATCGATGCCATATCCCAGATATGGTCTTACACA
1 TCACATCAATGCCATATCCCAGATATGGTCTTACACA
24038096 TAAGCTTAAT
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 32 0.49
43 33 0.51
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (42 bp):
TCACATCAATGCCATATCCCAGATATGGTCTTACACAAAATC
Found at i:24044807 original size:36 final size:36
Alignment explanation
Indices: 24044767--24044839 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
24044757 TGGAGATAAA
24044767 AATTCTGTGTTAAGAGTATAAAAAATTTATGTTAAG
1 AATTCTGTGTTAAGAGTATAAAAAATTTATGTTAAG
24044803 AATTCTGTGTTAAGAGTATAAAAAATTTATGTTAAG
1 AATTCTGTGTTAAGAGTATAAAAAATTTATGTTAAG
24044839 A
1 A
24044840 GTTAGATCAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.42, C:0.03, G:0.16, T:0.38
Consensus pattern (36 bp):
AATTCTGTGTTAAGAGTATAAAAAATTTATGTTAAG
Found at i:24046207 original size:18 final size:20
Alignment explanation
Indices: 24046184--24046237 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 20
24046174 TCACATTTTC
* *
24046184 CTCTCAACTT-TCTC-AATT
1 CTCTCAAATTCTCTCAAACT
24046202 CTCTCAAATTCTCTCAAACT
1 CTCTCAAATTCTCTCAAACT
*
24046222 CTCTC-AAGTCTCTCAA
1 CTCTCAAATTCTCTCAA
24046238 GTCCCTTGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 9 0.29
19 14 0.45
20 8 0.26
ACGTcount: A:0.26, C:0.35, G:0.02, T:0.37
Consensus pattern (20 bp):
CTCTCAAATTCTCTCAAACT
Found at i:24046213 original size:10 final size:10
Alignment explanation
Indices: 24046184--24046237 Score: 60
Period size: 10 Copynumber: 5.7 Consensus size: 10
24046174 TCACATTTTC
*
24046184 CTCTCAACTT
1 CTCTCAAATT
24046194 -TCTC-AATT
1 CTCTCAAATT
24046202 CTCTCAAATT
1 CTCTCAAATT
*
24046212 CTCTCAAACT
1 CTCTCAAATT
*
24046222 CTCTC-AAGT
1 CTCTCAAATT
24046231 CTCTCAA
1 CTCTCAA
24046238 GTCCCTTGTT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
8 3 0.08
9 16 0.42
10 19 0.50
ACGTcount: A:0.26, C:0.35, G:0.02, T:0.37
Consensus pattern (10 bp):
CTCTCAAATT
Found at i:24046240 original size:9 final size:9
Alignment explanation
Indices: 24046184--24046237 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
24046174 TCACATTTTC
24046184 CTCTCAACT
1 CTCTCAACT
* *
24046193 TTCTCAATT
1 CTCTCAACT
*
24046202 CTCTCAAATT
1 CTCTC-AACT
24046212 CTCTCAAACT
1 CTCTC-AACT
*
24046222 CTCTCAAGT
1 CTCTCAACT
24046231 CTCTCAA
1 CTCTCAA
24046238 GTCCCTTGTT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
9 21 0.54
10 18 0.46
ACGTcount: A:0.26, C:0.35, G:0.02, T:0.37
Consensus pattern (9 bp):
CTCTCAACT
Found at i:24053339 original size:210 final size:210
Alignment explanation
Indices: 24052977--24053396 Score: 759
Period size: 210 Copynumber: 2.0 Consensus size: 210
24052967 ACCTGGCCTC
* *
24052977 CTGGTTATACTTGAACTCGTGACTGCATCACGGCTGTCGATTGGGACCTTCACGTTGAATTCAAC
1 CTGGTTATACTTGAACTCGTGACTGCATCACGGCTATCGACTGGGACCTTCACGTTGAATTCAAC
* *
24053042 CCCTGATTGCATCATGCATTATTGCCTTGAAATCGAATTTCCCCACAATGGGTTTCTAAGGTTAT
66 CCCTGATTGCATCATGCATTATTGCCCTAAAATCGAATTTCCCCACAATGGGTTTCTAAGGTTAT
*
24053107 GGAATTCCCCTAAAAAATACCTAAGAATTTCTACCGTTTCAGTCGAAAACCCTGAACACTTTCAA
131 GGAATTCCCCTAAAAAATACCTAAGAATTTCTACCATTTCAGTCGAAAACCCTGAACACTTTCAA
24053172 AATACCCTAAACCCT
196 AATACCCTAAACCCT
*
24053187 CTGGTTATACTTGAACTCGTGACTGCATCACGGTTATCGACTGGGACCTTCACGTTGAATTCAAC
1 CTGGTTATACTTGAACTCGTGACTGCATCACGGCTATCGACTGGGACCTTCACGTTGAATTCAAC
*
24053252 CCCTGATTGTATCATGCATTATTGCCCTAAAATCGAATTTCCCCACAATGGGTTTCTAAGGTTAT
66 CCCTGATTGCATCATGCATTATTGCCCTAAAATCGAATTTCCCCACAATGGGTTTCTAAGGTTAT
* *
24053317 GGATTTCCCCTAAAAAATACCTAAGAATTTCTACCATTTCAGTCGAAAACCCTGAACACTTTCGA
131 GGAATTCCCCTAAAAAATACCTAAGAATTTCTACCATTTCAGTCGAAAACCCTGAACACTTTCAA
24053382 AATACCCTAAACCCT
196 AATACCCTAAACCCT
24053397 AACTCTAGGA
Statistics
Matches: 201, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
210 201 1.00
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (210 bp):
CTGGTTATACTTGAACTCGTGACTGCATCACGGCTATCGACTGGGACCTTCACGTTGAATTCAAC
CCCTGATTGCATCATGCATTATTGCCCTAAAATCGAATTTCCCCACAATGGGTTTCTAAGGTTAT
GGAATTCCCCTAAAAAATACCTAAGAATTTCTACCATTTCAGTCGAAAACCCTGAACACTTTCAA
AATACCCTAAACCCT
Found at i:24054800 original size:24 final size:24
Alignment explanation
Indices: 24054773--24054820 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
24054763 GGATTTTTAT
24054773 CATGATCAAGATAAAGTTTTGGTA
1 CATGATCAAGATAAAGTTTTGGTA
24054797 CATGATCAAGATAAAGTTTTGGTA
1 CATGATCAAGATAAAGTTTTGGTA
24054821 TACTTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (24 bp):
CATGATCAAGATAAAGTTTTGGTA
Found at i:24058679 original size:26 final size:26
Alignment explanation
Indices: 24058649--24058756 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
24058639 TGAAATGCCC
24058649 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
24058675 ATCATGGAATATTTACTTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
24058701 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
24058727 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
24058753 ATCA
1 ATCA
24058757 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.35, C:0.22, G:0.07, T:0.35
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:24059243 original size:16 final size:16
Alignment explanation
Indices: 24059222--24059260 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
24059212 AATAGATTTC
24059222 TAGGCATTTGAAGATT
1 TAGGCATTTGAAGATT
24059238 TAGGCATTTGAAGATT
1 TAGGCATTTGAAGATT
*
24059254 TTGGCAT
1 TAGGCAT
24059261 ATCCCCTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (16 bp):
TAGGCATTTGAAGATT
Found at i:24064787 original size:13 final size:13
Alignment explanation
Indices: 24064769--24064802 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
24064759 TATGGATAAG
24064769 AATACTAAAAACT
1 AATACTAAAAACT
*
24064782 AATACTAACAACT
1 AATACTAAAAACT
*
24064795 ATTACTAA
1 AATACTAA
24064803 TTGTACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.56, C:0.18, G:0.00, T:0.26
Consensus pattern (13 bp):
AATACTAAAAACT
Found at i:24068068 original size:32 final size:32
Alignment explanation
Indices: 24068027--24068090 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
24068017 AAATTACACA
24068027 AAATTTCAACAAAATAAGAAGAGGCTTATATC
1 AAATTTCAACAAAATAAGAAGAGGCTTATATC
*
24068059 AAATTTCAACAAAATAAGAAGAGGCTTCTATC
1 AAATTTCAACAAAATAAGAAGAGGCTTATATC
24068091 TCCCTCTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.48, C:0.14, G:0.12, T:0.25
Consensus pattern (32 bp):
AAATTTCAACAAAATAAGAAGAGGCTTATATC
Found at i:24071570 original size:25 final size:24
Alignment explanation
Indices: 24071514--24071588 Score: 62
Period size: 25 Copynumber: 3.0 Consensus size: 24
24071504 TCACATTGGT
* * *
24071514 TTATTGACTCTTATTTCATTTCTAT
1 TTATTTACTATTATTTCATTT-TAA
*
24071539 TTTTTTACTATTATTTCGATTTTAA
1 TTATTTACTATTATTTC-ATTTTAA
* *
24071564 TTATTTA-TGTTATTTTTATTTTAA
1 TTATTTACTATTA-TTTCATTTTAA
24071588 T
1 T
24071589 CAAATTTAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
24 12 0.29
25 25 0.61
26 4 0.10
ACGTcount: A:0.23, C:0.08, G:0.04, T:0.65
Consensus pattern (24 bp):
TTATTTACTATTATTTCATTTTAA
Found at i:24074638 original size:16 final size:16
Alignment explanation
Indices: 24074617--24074674 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
24074607 AATTGTAAAA
24074617 TAATAATTATAAAACC
1 TAATAATTATAAAACC
* **
24074633 TAATAATTAAAATTGTAAAA
1 TAATAATTATAA----AACC
24074653 TAATAATTATAAAACC
1 TAATAATTATAAAACC
24074669 TAATAA
1 TAATAA
24074675 AAATAAACTT
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 19 0.59
20 13 0.41
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.33
Consensus pattern (16 bp):
TAATAATTATAAAACC
Found at i:24074648 original size:36 final size:36
Alignment explanation
Indices: 24074601--24074674 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
24074591 AATAGCCAAA
24074601 AATTAAAATTGTAAAATAATAATTATAAAACCTAAT
1 AATTAAAATTGTAAAATAATAATTATAAAACCTAAT
24074637 AATTAAAATTGTAAAATAATAATTATAAAACCTAAT
1 AATTAAAATTGTAAAATAATAATTATAAAACCTAAT
24074673 AA
1 AA
24074675 AAATAAACTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.32
Consensus pattern (36 bp):
AATTAAAATTGTAAAATAATAATTATAAAACCTAAT
Found at i:24074658 original size:20 final size:20
Alignment explanation
Indices: 24074601--24074661 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
24074591 AATAGCCAAA
24074601 AATTAAAATTGTAAAATAAT
1 AATTAAAATTGTAAAATAAT
* **
24074621 AATTATAA----AACCTAAT
1 AATTAAAATTGTAAAATAAT
24074637 AATTAAAATTGTAAAATAAT
1 AATTAAAATTGTAAAATAAT
24074657 AATTA
1 AATTA
24074662 TAAAACCTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
16 13 0.42
20 18 0.58
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.34
Consensus pattern (20 bp):
AATTAAAATTGTAAAATAAT
Found at i:24087110 original size:47 final size:47
Alignment explanation
Indices: 24087056--24087523 Score: 693
Period size: 47 Copynumber: 10.0 Consensus size: 47
24087046 TTAGGATTTT
*
24087056 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
24087103 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
24087150 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
24087197 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
24087244 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
24087291 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
** *
24087338 ATGTGATGAACGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
24087385 ATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
24087432 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
24087479 ATGTGGTGAATATGAAAATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGC
24087524 TAGTGTGAAA
Statistics
Matches: 380, Mismatches: 41, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 380 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:24087299 original size:25 final size:25
Alignment explanation
Indices: 24087224--24087299 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
24087214 ATGTATATAT
24087224 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
24087249 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
24087271 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
24087296 GTGA
1 GTGA
24087300 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:24087487 original size:25 final size:25
Alignment explanation
Indices: 24087412--24087487 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
24087402 ATGCATATAT
24087412 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
24087437 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
24087459 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
24087484 GTGA
1 GTGA
24087488 ATATGAAAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:24087531 original size:94 final size:94
Alignment explanation
Indices: 24087056--24087523 Score: 765
Period size: 94 Copynumber: 5.0 Consensus size: 94
24087046 TTAGGATTTT
* * * *
24087056 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
1 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
* *
24087121 TGTATATATGTGATAAGGCTGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
24087150 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
1 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
*
24087215 TGTATATATGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
24087244 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
1 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
*
24087309 TGCATATATGTGATAAGGCCGAATGGCCT
66 TGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * * *
24087338 ATGTGATGAACGTGAACATGCATATATGTGATGAGGCCGAATGGCCAATGTGATAAATGTGAGCA
1 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
24087403 TGCATATATGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
*
24087432 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAAAA
1 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
* *
24087497 TGCATATATGTGGTAAAGCCGAATGGC
66 TGCATATATGTGATAAGGCCGAATGGC
24087524 TAGTGTGAAA
Statistics
Matches: 347, Mismatches: 27, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 347 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
TGCATATATGTGATAAGGCCGAATGGCCA
Found at i:24087744 original size:37 final size:37
Alignment explanation
Indices: 24087686--24087837 Score: 232
Period size: 37 Copynumber: 4.1 Consensus size: 37
24087676 GGAAATATAT
*
24087686 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
24087723 TTCGAGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
24087760 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
24087797 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTACG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
24087834 TCCG
1 TCCG
24087838 AGCTAAAGGT
Statistics
Matches: 105, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:24092572 original size:47 final size:47
Alignment explanation
Indices: 24092514--24093270 Score: 1201
Period size: 47 Copynumber: 16.3 Consensus size: 47
24092504 GTATGAGATA
* * *
24092514 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
24092561 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
24092608 TATATATGTGCTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
24092655 TATATAAGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
24092702 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
24092749 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTAAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
24092796 TATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
24092843 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
24092890 TATATATGTG---A----TAA---CCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
24092927 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
24092974 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
24093021 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
24093068 CATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
24093115 TATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
24093162 CATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
24093209 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
24093256 TATAAATGTGATAAG
1 TATATATGTGATAAG
24093271 TCCCGAAGGG
Statistics
Matches: 662, Mismatches: 38, Indels: 20
0.92 0.05 0.03
Matches are distributed among these distances:
37 33 0.05
40 4 0.01
44 4 0.01
47 621 0.94
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:24092851 original size:25 final size:25
Alignment explanation
Indices: 24092823--24092901 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
24092813 CTAATGGCCG
24092823 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
24092848 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
24092870 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
24092895 ATGTGAT
1 ATGTGAT
24092902 AACCGATGTG
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Done.