Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 89 of 438
Found at i:24446450 original size:37 final size:37
Alignment explanation
Indices: 24446400--24446551 Score: 243
Period size: 37 Copynumber: 4.1 Consensus size: 37
24446390 ATTCCGGGTG
24446400 AGACCCGATGACTACGTGTGGAGATTATGTCCAGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCAGGTA
* *
24446437 AGACCCGATGACTACGTGTAGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCAGGTA
* *
24446474 AGACCCGATGACTACATGTGGAAATTATGT-CAGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCA-GGTA
*
24446511 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCAGGTA
24446548 AGAC
1 AGAC
24446552 TTCGTAATAA
Statistics
Matches: 104, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
36 1 0.01
37 102 0.98
38 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGTCCAGGTA
Found at i:24446513 original size:74 final size:74
Alignment explanation
Indices: 24446392--24446551 Score: 268
Period size: 74 Copynumber: 2.2 Consensus size: 74
24446382 GGAAATATAT
* * *
24446392 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATGTCCAGGTAAGACCCGATGACTACGTGTA
1 TCCGGGTAAGACCCGATGACTACATGTGGAAATTATGTCCAGGTAAGACCCGATGACTACGTGTA
24446457 GAGATTATG
66 GAGATTATG
24446466 TCCGGGTAAGACCCGATGACTACATGTGGAAATTATGT-CAGGGTAAGACCCGATGACTACGTGT
1 TCCGGGTAAGACCCGATGACTACATGTGGAAATTATGTCCA-GGTAAGACCCGATGACTACGTGT
*
24446530 GGAGATTATG
65 AGAGATTATG
24446540 TCCGGGTAAGAC
1 TCCGGGTAAGAC
24446552 TTCGTAATAA
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
73 2 0.02
74 79 0.98
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (74 bp):
TCCGGGTAAGACCCGATGACTACATGTGGAAATTATGTCCAGGTAAGACCCGATGACTACGTGTA
GAGATTATG
Found at i:24452412 original size:40 final size:39
Alignment explanation
Indices: 24452244--24452414 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
24452234 AGAAATTGAA
* *
24452244 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
24452284 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
24452324 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
24452364 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
24452404 TGATATCCGGG
1 TGATATCCGGG
24452415 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:24460379 original size:40 final size:40
Alignment explanation
Indices: 24460277--24460461 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 40
24460267 AAATTGAATG
* * * * *
24460277 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
24460317 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
24460357 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAG-TT
* * * * * *
24460398 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
24460438 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
24460462 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
39 3 0.02
40 83 0.69
41 33 0.27
42 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:24462269 original size:45 final size:45
Alignment explanation
Indices: 24462185--24462299 Score: 146
Period size: 45 Copynumber: 2.6 Consensus size: 45
24462175 CCGATATTTT
* *
24462185 GCCTGCTAGGCTCGAA-GCCCG-ATATCATTTCACCGGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATATCATTTCACCAGCATTATA
* *
24462228 GCCTGCTAGGCTCAAAGGCCTGAATAGT-ATTTCACCAGCATTGTA
1 GCCTGCTAGGCTCAAAGGCCCGAATA-TCATTTCACCAGCATTATA
* *
24462273 GCCTACTAGGTTCAAAGGCCCGAATAT
1 GCCTGCTAGGCTCAAAGGCCCGAATAT
24462300 TACTGTACGA
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
43 15 0.24
44 5 0.08
45 41 0.66
46 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (45 bp):
GCCTGCTAGGCTCAAAGGCCCGAATATCATTTCACCAGCATTATA
Found at i:24468026 original size:43 final size:43
Alignment explanation
Indices: 24467942--24468026 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
24467932 CAATGGCAAC
* ** *
24467942 ATCCCAGACATGGTCTTACATGTAGTCACATATCGATGTCACT
1 ATCCCAGACAGGGTCTTACATGTAAACACATACCGATGTCACT
24467985 ATCCCAGACAGGGTCTTAC-TCGTAAACACATACCAGA-GTCAC
1 ATCCCAGACAGGGTCTTACAT-GTAAACACATACC-GATGTCAC
24468027 AAATCGATGC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
42 1 0.03
43 33 0.92
44 2 0.06
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (43 bp):
ATCCCAGACAGGGTCTTACATGTAAACACATACCGATGTCACT
Found at i:24472630 original size:19 final size:19
Alignment explanation
Indices: 24472602--24472647 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
24472592 ATGAAATTTT
* *
24472602 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGAAAA
*
24472621 AATTATTATTATTAGAAAA
1 AATTATTATTATGAGAAAA
*
24472640 AAATATTA
1 AATTATTA
24472648 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (19 bp):
AATTATTATTATGAGAAAA
Found at i:24474474 original size:28 final size:28
Alignment explanation
Indices: 24474442--24474510 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
24474432 GCGTAGATCA
24474442 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
24474470 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
24474498 CGATA-TACCCCTA
1 CGAAATTACCCCTA
24474511 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:24476204 original size:28 final size:28
Alignment explanation
Indices: 24476163--24476231 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
24476153 TTTAAAACCC
*
24476163 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
24476190 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
*
24476218 TAGGGATAATTTCG
1 TAGGGGTAATTTCG
24476232 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:24483651 original size:40 final size:40
Alignment explanation
Indices: 24483592--24483799 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 40
24483582 CAATTGAATG
* * * * *
24483592 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * * * *
24483632 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * *
24483672 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * *
24483712 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * * *
24483752 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
24483792 ATATCCGG
1 ATATCCGG
24483800 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
Found at i:24491593 original size:40 final size:40
Alignment explanation
Indices: 24491534--24491740 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 40
24491524 CAATTGAATG
* * * * *
24491534 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * * * *
24491574 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * *
24491614 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * *
24491654 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * * *
24491694 CTATCCGGGCTAAGACCC-AAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
24491733 ATATCCGG
1 ATATCCGG
24491741 TTGTATTCTG
Statistics
Matches: 141, Mismatches: 26, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
39 25 0.18
40 116 0.82
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
Found at i:24495562 original size:30 final size:30
Alignment explanation
Indices: 24495526--24495593 Score: 136
Period size: 30 Copynumber: 2.3 Consensus size: 30
24495516 ATACCAGGGG
24495526 ACACACGGCCATGTAACATGACCATGTGTC
1 ACACACGGCCATGTAACATGACCATGTGTC
24495556 ACACACGGCCATGTAACATGACCATGTGTC
1 ACACACGGCCATGTAACATGACCATGTGTC
24495586 ACACACGG
1 ACACACGG
24495594 TCGAAACACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.31, C:0.31, G:0.21, T:0.18
Consensus pattern (30 bp):
ACACACGGCCATGTAACATGACCATGTGTC
Found at i:24495605 original size:30 final size:29
Alignment explanation
Indices: 24495526--24495601 Score: 100
Period size: 30 Copynumber: 2.6 Consensus size: 29
24495516 ATACCAGGGG
*
24495526 ACACACGGCCATGTAACATGACCATGTGTC
1 ACACACGGCCA-GAAACATGACCATGTGTC
*
24495556 ACACACGGCCATGTAACATGACCATGTGTC
1 ACACACGGCCA-GAAACATGACCATGTGTC
*
24495586 ACACACGGTC-GAAACA
1 ACACACGGCCAGAAACA
24495602 CATGCCCGTG
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
28 5 0.11
30 39 0.89
ACGTcount: A:0.33, C:0.30, G:0.20, T:0.17
Consensus pattern (29 bp):
ACACACGGCCAGAAACATGACCATGTGTC
Found at i:24495684 original size:14 final size:14
Alignment explanation
Indices: 24495651--24495683 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
24495641 TTTGCAAAGC
*
24495651 CATTTTGCCGCCCT
1 CATTTTGCCACCCT
24495665 CATTTTGCCACCCT
1 CATTTTGCCACCCT
24495679 -ATTTT
1 CATTTT
24495684 TACATACCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.12, C:0.36, G:0.09, T:0.42
Consensus pattern (14 bp):
CATTTTGCCACCCT
Found at i:24501435 original size:15 final size:15
Alignment explanation
Indices: 24501415--24501444 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
24501405 GTTTACATGG
24501415 TGTCCTTCACTTGGA
1 TGTCCTTCACTTGGA
24501430 TGTCCTTCACTTGGA
1 TGTCCTTCACTTGGA
24501445 ACCACACATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.20, T:0.40
Consensus pattern (15 bp):
TGTCCTTCACTTGGA
Found at i:24501565 original size:68 final size:68
Alignment explanation
Indices: 24501472--24501598 Score: 159
Period size: 68 Copynumber: 1.9 Consensus size: 68
24501462 GCTACATTTA
* * * *
24501472 TCTCGTAGCTCTCTTGTCTATATGGTGTACA-CATAGTATCACCCATGTGACCTAGCTACCTCAT
1 TCTCGTAGCTCTCTTGTCTACATGGTATACATC-CAGTATCACACATGTGACCTAGCTACCTCAT
24501536 AATG
65 AATG
* * *
24501540 TCTCGTATCTCTCTTGTAC-ACATGGTATACATCCCGTATTACACATGTGACCTAGCTAC
1 TCTCGTAGCTCTCTTGT-CTACATGGTATACATCCAGTATCACACATGTGACCTAGCTAC
24501599 ATACCATCTG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
68 48 0.96
69 2 0.04
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.34
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTATACATCCAGTATCACACATGTGACCTAGCTACCTCATA
ATG
Found at i:24503213 original size:40 final size:40
Alignment explanation
Indices: 24503168--24503334 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
24503158 CGGAATATAA
24503168 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
24503208 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
24503248 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
24503288 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
24503327 CCGGATAT
1 CCGGATAT
24503335 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:24503318 original size:80 final size:79
Alignment explanation
Indices: 24503168--24503334 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
24503158 CGGAATATAA
* *
24503168 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
24503233 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
24503248 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
24503310 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
24503327 CCGGATAT
1 CCGGATAT
24503335 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:24504182 original size:17 final size:19
Alignment explanation
Indices: 24504159--24504204 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
24504149 AAGAAGCATG
24504159 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
24504177 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
24504195 AATCATGCTC
1 AATCATGCTC
24504205 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:24511272 original size:40 final size:39
Alignment explanation
Indices: 24511228--24511329 Score: 114
Period size: 40 Copynumber: 2.6 Consensus size: 39
24511218 CTCGCACGAA
* *
24511228 TGCCTTCGGGCCTTAGCCCGGATATAGCCACTAGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATAACCACCAGCACAAT
* *** *
24511268 TGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAAT
1 TGCCTTCGGG-CTTAGCCCGGATATAACCACCAGCACAAT
*
24511308 TGTCTTCGGGCTTAGCCCGGAT
1 TGCCTTCGGGCTTAGCCCGGAT
24511330 NGAATGTGTT
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
39 11 0.21
40 41 0.79
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATAACCACCAGCACAAT
Found at i:24513035 original size:40 final size:40
Alignment explanation
Indices: 24512976--24513117 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
24512966 AAATTGAATG
* * *
24512976 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
24513016 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
24513056 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
24513096 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
24513118 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:24513118 original size:40 final size:39
Alignment explanation
Indices: 24513015--24513143 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
24513005 TGCTGGAAAT
* * *
24513015 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
24513055 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
24513095 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
24513135 TATATCCGG
1 TATATCCGG
24513144 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:24521043 original size:40 final size:40
Alignment explanation
Indices: 24520984--24521125 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
24520974 AAATTGAATG
* * *
24520984 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
24521024 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
24521064 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
24521104 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
24521126 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:24521126 original size:40 final size:39
Alignment explanation
Indices: 24521023--24521151 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
24521013 TGCTGGAAAT
* * *
24521023 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
24521063 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
24521103 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
24521143 TATATCCGG
1 TATATCCGG
24521152 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:24526335 original size:48 final size:44
Alignment explanation
Indices: 24526278--24526426 Score: 133
Period size: 46 Copynumber: 3.2 Consensus size: 44
24526268 TCCTAGGTAT
* *
24526278 GGTCCTACACTGACACCTCTATACGTGTCGATGCCATGTCCCAGACAA
1 GGTCTTACACTGACACCTC--TACGTGCCGATG-CATGTCCCAGAC-A
*
24526326 GGTCTTACACTGACACATCT-CGTAGCCGATGCATGTCCCAGACA
1 GGTCTTACACTGACACCTCTACGT-GCCGATGCATGTCCCAGACA
* * *
24526370 TGTCTTACACTGGCTTACCTC-ACAAG-GCCGATGTATGTCCCAGACA
1 GGTCTTACACTGAC--ACCTCTAC--GTGCCGATGCATGTCCCAGACA
*
24526416 CGTCTTACACT
1 GGTCTTACACT
24526427 AGCTCTCATC
Statistics
Matches: 87, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
44 13 0.15
45 15 0.17
46 41 0.47
48 18 0.21
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (44 bp):
GGTCTTACACTGACACCTCTACGTGCCGATGCATGTCCCAGACA
Found at i:24526402 original size:46 final size:45
Alignment explanation
Indices: 24526350--24526520 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 45
24526340 ACATCTCGTA
*
24526350 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACCTCACAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CCTCATAAG
* * * * * *
24526396 GCCGATGTATGTCCCAGACACGTCTTACACTAGCTCTCATCTTAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TCCTCATAAG
* * *
24526442 GTCGATGCCATGTCCCAAACATGGTCTTACACCGGC-T-CTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCCTCATAA---G
* *
24526490 GCCGATGCATGTTCCAGGCATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
24526521 AGAACACAAA
Statistics
Matches: 98, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
45 5 0.05
46 53 0.54
47 23 0.23
48 17 0.17
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCCTCATAAG
Found at i:24536439 original size:44 final size:42
Alignment explanation
Indices: 24536376--24536537 Score: 132
Period size: 44 Copynumber: 3.8 Consensus size: 42
24536366 TATGTGTTTT
* * *
24536376 CGTGTAAGACCACATCTGGGACGTTGGCATCGACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATTGA-TT-TGATTTA
* *
24536420 CGTGTAAGACCATGTCTGGGACATCGGCATTGTATTTGATTT-
1 CGTGTAAGACCACGTCTGGGACATTGGCATTG-ATTTGATTTA
* * *
24536462 TGTGTAAGACC-CTGTTTGGGGACAATGGCATTGATATTTGA-TTA
1 CGTGTAAGACCAC-GTCT-GGGACATTGGCATTG--ATTTGATTTA
* * * *
24536506 CATGTATGACCACGTTTGGGACGTTGGCATTG
1 CGTGTAAGACCACGTCTGGGACATTGGCATTG
24536538 TATGAGTTTT
Statistics
Matches: 97, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
42 13 0.13
43 34 0.35
44 48 0.49
45 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATTGATTTGATTTA
Found at i:24537127 original size:12 final size:12
Alignment explanation
Indices: 24537110--24537139 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
24537100 CTTGGTATGA
24537110 AATATGTGATGC
1 AATATGTGATGC
24537122 AATATGTGATGC
1 AATATGTGATGC
24537134 AATATG
1 AATATG
24537140 ATCTACATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.33
Consensus pattern (12 bp):
AATATGTGATGC
Found at i:24537410 original size:21 final size:23
Alignment explanation
Indices: 24537365--24537413 Score: 66
Period size: 21 Copynumber: 2.2 Consensus size: 23
24537355 ATGGTGTATG
*
24537365 ATTTGGTTGTAAAATGGTTGAGA
1 ATTTGGTTATAAAATGGTTGAGA
*
24537388 ATTTGG-TATAAAAT-GTTGTGA
1 ATTTGGTTATAAAATGGTTGAGA
24537409 ATTTG
1 ATTTG
24537414 ATGCTTGTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 11 0.46
22 7 0.29
23 6 0.25
ACGTcount: A:0.31, C:0.00, G:0.27, T:0.43
Consensus pattern (23 bp):
ATTTGGTTATAAAATGGTTGAGA
Found at i:24542013 original size:20 final size:20
Alignment explanation
Indices: 24541954--24542019 Score: 64
Period size: 20 Copynumber: 3.2 Consensus size: 20
24541944 TTGTACGGGA
*
24541954 TTGCACTAT-GGTGCCTCTGT
1 TTGCACT-TCGGTGCCTCTTT
* *
24541974 ATACACTTCGGTGTCC-CTTT
1 TTGCACTTCGGTG-CCTCTTT
24541994 TTGCACTTCGGTGCCTCTTT
1 TTGCACTTCGGTGCCTCTTT
24542014 TATGCA
1 T-TGCA
24542020 TCTTTGATGC
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
19 3 0.08
20 28 0.76
21 6 0.16
ACGTcount: A:0.12, C:0.27, G:0.20, T:0.41
Consensus pattern (20 bp):
TTGCACTTCGGTGCCTCTTT
Found at i:24565260 original size:39 final size:39
Alignment explanation
Indices: 24565206--24565388 Score: 305
Period size: 39 Copynumber: 4.7 Consensus size: 39
24565196 GAATGTTCGA
24565206 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
24565245 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
24565284 GTGATA-CCTGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCC-GGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
24565323 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
24565362 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
24565389 CTTTGAGCGG
Statistics
Matches: 134, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
38 2 0.01
39 121 0.90
40 11 0.08
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:24567916 original size:31 final size:30
Alignment explanation
Indices: 24567856--24567918 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 30
24567846 ATTACCGGAG
*
24567856 TTTTCAAAACAAACAAAAATAAATTTTAAAC
1 TTTTCAAAACAAACAAAAACAAA-TTTAAAC
* *
24567887 TTTTCAAATCAAATCAATAAACAAATTAAAAC
1 TTTTCAAAACAAA-CAA-AAACAAATTTAAAC
24567919 CAAGTCAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 12 0.44
32 9 0.33
33 6 0.22
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (30 bp):
TTTTCAAAACAAACAAAAACAAATTTAAAC
Found at i:24569944 original size:20 final size:20
Alignment explanation
Indices: 24569921--24569974 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
24569911 TAAATTGTAA
* * *
24569921 TTCATTCATATAACCAGTAG
1 TTCATCCATATAAACAATAG
*
24569941 TTCATCCGTATAAACAATAG
1 TTCATCCATATAAACAATAG
*
24569961 TTCATCTATATAAA
1 TTCATCCATATAAA
24569975 AACAAATCTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.35
Consensus pattern (20 bp):
TTCATCCATATAAACAATAG
Found at i:24570520 original size:17 final size:17
Alignment explanation
Indices: 24570498--24570533 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
24570488 ATCATAAACA
24570498 TATAACTTAACTAATAT
1 TATAACTTAACTAATAT
24570515 TATAACTTAACTAATAT
1 TATAACTTAACTAATAT
24570532 TA
1 TA
24570534 GCCATCCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (17 bp):
TATAACTTAACTAATAT
Found at i:24573023 original size:23 final size:23
Alignment explanation
Indices: 24572993--24573105 Score: 124
Period size: 23 Copynumber: 4.9 Consensus size: 23
24572983 TGAGCTAATG
24572993 AACAGTAAGCTCTATTGAGCTGA
1 AACAGTAAGCTCTATTGAGCTGA
* *
24573016 AACGGTAAGCTCTATCGAGCTG-
1 AACAGTAAGCTCTATTGAGCTGA
*
24573038 AACAGTAAGCTC-ATACGAGCTGA
1 AACAGTAAGCTCTAT-TGAGCTGA
* * *
24573061 AACGGTAAGCTCCAATGAGCTGAA
1 AACAGTAAGCTCTATTGAGCTG-A
24573085 AACAGTAAGCTCT-TATGAGCT
1 AACAGTAAGCTCTAT-TGAGCT
24573106 AATATATCTG
Statistics
Matches: 76, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
21 2 0.03
22 18 0.24
23 37 0.49
24 19 0.25
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (23 bp):
AACAGTAAGCTCTATTGAGCTGA
Found at i:24573058 original size:45 final size:44
Alignment explanation
Indices: 24572991--24573105 Score: 151
Period size: 45 Copynumber: 2.5 Consensus size: 44
24572981 CTTGAGCTAA
*
24572991 TGAACAGTAAGCTCTATTGAGCTGAAACGGTAAGCT-CTATCGAGC
1 TGAACAGTAAGCTCTA-TGAGCTGAAACGGTAAGCTCCAAT-GAGC
*
24573036 TGAACAGTAAGCTCATACGAGCTGAAACGGTAAGCTCCAATGAGC
1 TGAACAGTAAGCTC-TATGAGCTGAAACGGTAAGCTCCAATGAGC
24573081 TGAAAACAGTAAGCTCTTATGAGCT
1 TG--AACAGTAAGCTC-TATGAGCT
24573106 AATATATCTG
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
45 38 0.61
46 5 0.08
47 19 0.31
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (44 bp):
TGAACAGTAAGCTCTATGAGCTGAAACGGTAAGCTCCAATGAGC
Found at i:24573299 original size:23 final size:24
Alignment explanation
Indices: 24573265--24573320 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
24573255 GCATTTAATG
*
24573265 ATCA-ATA-ATTCAATT-TATCAA
1 ATCATATACATTCAATTCAATCAA
*
24573286 ATCATATACATTCAATTCAATTAA
1 ATCATATACATTCAATTCAATCAA
24573310 AT-ATATACATT
1 ATCATATACATT
24573321 TAAATACTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 4 0.13
22 3 0.10
23 17 0.57
24 6 0.20
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.39
Consensus pattern (24 bp):
ATCATATACATTCAATTCAATCAA
Found at i:24592474 original size:13 final size:13
Alignment explanation
Indices: 24592456--24592480 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24592446 GTAAGTGATT
24592456 TTGATGATTTTTC
1 TTGATGATTTTTC
24592469 TTGATGATTTTT
1 TTGATGATTTTT
24592481 ACATTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:24602553 original size:46 final size:46
Alignment explanation
Indices: 24602378--24602553 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
24602368 TGTAACCCGC
* * * * *
24602378 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
24602424 CCATGAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
24602474 -C-TCACT-AACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
24602517 CCATAAGTGAACTCGGACTCAACTCAACGCGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
24602554 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 57 0.55
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:24602555 original size:93 final size:93
Alignment explanation
Indices: 24602387--24602557 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
24602377 CCCATAAGCG
* * *
24602387 AACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
24602452 GAGTTTGGATGCCTAGTTACATCTCACT
66 GAGTTCGGATGCCTAGTTACATCTCACT
* * *
24602480 AACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
24602545 GCGTTCGGATGCC
66 GAGTTCGGATGCC
24602558 CAAATATCCT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACT
Found at i:24610372 original size:93 final size:93
Alignment explanation
Indices: 24610264--24610435 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
24610254 CGCCCATAAG
*
24610264 CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
24610329 ACGTGCTCGGATGCGTAGTTACATCTCA
66 ACGAGCTCGGATGCGTAGTTACATCTCA
* *
24610357 CGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
24610422 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
24610436 CCAAATATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCGTAGTTACATCTCA
Found at i:24610433 original size:46 final size:46
Alignment explanation
Indices: 24610257--24610435 Score: 220
Period size: 46 Copynumber: 3.9 Consensus size: 46
24610247 TGTAACCCGC
* *
24610257 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
* * *
24610303 CCATAAGTGAACTCGGACTCAACTCAACGTGCTCGGATGCGTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGC-TCG---CAT
* *
24610353 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
* *
24610396 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGC
24610436 CCAAATATCC
Statistics
Matches: 114, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 70 0.61
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
Found at i:24613107 original size:46 final size:48
Alignment explanation
Indices: 24613040--24613251 Score: 180
Period size: 46 Copynumber: 4.5 Consensus size: 48
24613030 ATTTGTGTGT
24613040 TAGTGTAAGA-CATGTCTGGGACATGCATCAGCCTCA-GA-ATGTAAGC
1 TAGTGTAAGACCATGTCTGGGACATGCATC-GCCTCATGAGATGTAAGC
*
24613086 TAGTGTAAGA-CATGTCTGGGACATGCA-CTGGCT-ATGAGATGT--GC
1 TAGTGTAAGACCATGTCTGGGACATGCATC-GCCTCATGAGATGTAAGC
* * * * * *
24613130 CAGTGTAA-ACCATGTCTGGGATATGGCATCGGCAC-GGATATGTGAGAGC
1 TAGTGTAAGACCATGTCTGGGACAT-GCATCGCCTCATGAGATGT-A-AGC
* *
24613179 TAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATG-GATG-AA-C
1 TAGTGTAAGACCATGTCTGGGACAT-GCATCG-CCTCATGAGATGTAAGC
*
24613226 TAGTGTAAGACCATGTCTGGGTCATG
1 TAGTGTAAGACCATGTCTGGGACATG
24613252 GCATTGACAT
Statistics
Matches: 137, Mismatches: 16, Indels: 26
0.77 0.09 0.15
Matches are distributed among these distances:
43 1 0.01
44 23 0.17
45 18 0.13
46 33 0.24
47 25 0.18
48 1 0.01
49 10 0.07
50 22 0.16
51 3 0.02
52 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.25
Consensus pattern (48 bp):
TAGTGTAAGACCATGTCTGGGACATGCATCGCCTCATGAGATGTAAGC
Found at i:24613246 original size:47 final size:48
Alignment explanation
Indices: 24613040--24613255 Score: 181
Period size: 47 Copynumber: 4.6 Consensus size: 48
24613030 ATTTGTGTGT
* * *
24613040 TAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCA-GA-ATGTAAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGACTGATGAGATG-AA-C
**
24613086 TAGTGTAAGA-CATGTCTGGGACAT-GCA-CTGG-CT-ATGAGATGTGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATC-GGACTGATGAGATGAAC
* * *
24613130 CAGTGTAA-ACCATGTCTGGGATATGGCATCGGCACGGAT-ATG-TGAGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGG-ACTGATGA-GATGA-A-C
24613179 TAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATG-GATGAAC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGAC-TGATGAGATGAAC
*
24613226 TAGTGTAAGACCATGTCTGGGTCATGGCAT
1 TAGTGTAAGACCATGTCTGGGACATGGCAT
24613256 TGACATTATA
Statistics
Matches: 142, Mismatches: 12, Indels: 31
0.77 0.06 0.17
Matches are distributed among these distances:
43 1 0.01
44 22 0.15
45 10 0.07
46 32 0.23
47 34 0.24
48 7 0.05
49 15 0.11
50 21 0.15
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGGACTGATGAGATGAAC
Found at i:24619390 original size:43 final size:43
Alignment explanation
Indices: 24619243--24619400 Score: 164
Period size: 42 Copynumber: 3.7 Consensus size: 43
24619233 TATGTGTTAT
*
24619243 CATGTAAGACCACGTCTAGGACGTTGGCATCGACTTATGTT--TTA
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGA--TAT-TTGATTA
* * *
24619287 CTTGTAAGACCACGCCTGGGACGTTGGCATCGATA-TTGATTT
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
* * *
24619329 CGTGTAAGACC-CTATCTGGGATAG-TGGCATCGATATTTGATTA
1 CATGTAAGACCAC-GTCTGGGA-CGTTGGCATCGATATTTGATTA
*
24619372 CATGTAAGACCACGTCTGGGACATTGGCA
1 CATGTAAGACCACGTCTGGGACGTTGGCA
24619401 CTGTATGAGC
Statistics
Matches: 94, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 31 0.33
43 29 0.31
44 31 0.33
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:24621431 original size:10 final size:10
Alignment explanation
Indices: 24621402--24621442 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
24621392 TAAGAGTATT
*
24621402 TGATGAATTG
1 TGATGAATTC
*
24621412 TCATTGAATTC
1 TGA-TGAATTC
24621423 TGATGAATTC
1 TGATGAATTC
24621433 TGATGAATTC
1 TGATGAATTC
24621443 CCATGCTCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
10 19 0.70
11 8 0.30
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (10 bp):
TGATGAATTC
Found at i:24627393 original size:79 final size:80
Alignment explanation
Indices: 24627255--24627461 Score: 213
Period size: 79 Copynumber: 2.6 Consensus size: 80
24627245 CAATTGAATG
* * ** ** * * *
24627255 ACATCCGGGCTAAGTCCCGAAGACATTTATGCTAA-TAATTATATCCGGGTTAAGACCCGAAGGC
1 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-AAGTGGTTAAATCCGGGCTAACACCCGAAGGC
*
24627319 AATTGTGCTA-GTGACT
65 AATTGTGCAACGTG-CT
* *
24627335 ACATTCGGGCTAAGA-CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAACACCCGAAGGCA
1 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAACACCCGAAGGCA
* * *
24627399 TTTGTGCAACTTGTT
66 ATTGTGCAACGTGCT
* * *
24627414 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGG
24627462 TTGTATTCCG
Statistics
Matches: 105, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
78 2 0.02
79 59 0.56
80 44 0.42
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (80 bp):
ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAACACCCGAAGGCA
ATTGTGCAACGTGCT
Found at i:24627455 original size:40 final size:40
Alignment explanation
Indices: 24627257--24627461 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 40
24627247 ATTGAATGAC
* * ** **
24627257 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAA-TAATTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGC-AAGTGGTTAT
* * ** *
24627297 ATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGGTTAT
* * *
24627337 ATTCGGGCTAAGA-CCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAT
* * * *
24627376 ATCCGGGCTAACACCCGAAGGCATTTGTGCAACTTGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAT
*
24627416 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAT
24627456 ATCCGG
1 ATCCGG
24627462 TTGTATTCCG
Statistics
Matches: 136, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
38 3 0.02
39 29 0.21
40 101 0.74
41 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAT
Found at i:24628973 original size:64 final size:64
Alignment explanation
Indices: 24628892--24629073 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
24628882 AGACATTATG
* *
24628892 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
24628956 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGATGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
24629021 AA
63 AA
* * *
24629023 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGCT-CACCATGT--ACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTG-TACACCATGTAGACAAGAGAGC
24629074 CGAACTATAT
Statistics
Matches: 99, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
61 10 0.10
63 10 0.10
64 21 0.21
65 8 0.08
66 16 0.16
67 32 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:24629009 original size:67 final size:64
Alignment explanation
Indices: 24628868--24629021 Score: 182
Period size: 67 Copynumber: 2.3 Consensus size: 64
24628858 CATCATGTGT
* * * *
24628868 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC--GAGA-TAT-ATGTAGCTAGGTCGCATGCGTGATACAATGTGGACACCATG
24628933 TAG
62 TAG
* * *
24628936 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGATGGACACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGT-GATACAA-TG-TGGACACCATGT
24629001 AG
63 AG
24629003 ACAAGAGAGCTACGAGATA
1 ACAAGAGAGCTACGAGATA
24629022 AACTGGCTAG
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
64 20 0.27
65 7 0.09
66 4 0.05
67 31 0.41
68 13 0.17
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGATACAATGTGGACACCATGTAG
Found at i:24635267 original size:19 final size:18
Alignment explanation
Indices: 24635230--24635273 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
24635220 ATACATACAG
24635230 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
24635247 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
24635266 TACTAATT
1 TAATAATT
24635274 AAAATTTCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:24638084 original size:43 final size:43
Alignment explanation
Indices: 24637918--24638083 Score: 162
Period size: 43 Copynumber: 3.9 Consensus size: 43
24637908 TATAAGCTCG
* * * *
24637918 TACAATGCC-ATGTCCCAGATATGGTCATACATGCT-ATAAC-A
1 TACAATGCCAATGTCCCAGACATGGTCTTACACG-TAATATCAA
* * *
24637959 TATCAATGCCACTGTCCTAGACAGGGTCTTACACG-AA-ATCAA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATATCAA
* * *
24638001 TTAACGATGCCGATGTCCCAGACATGGTCTTACACGTAATCTCAA
1 -T-ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATATCAA
*
24638046 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAAT
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAAT
24638084 CACATCTCGA
Statistics
Matches: 101, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
41 4 0.04
42 9 0.09
43 80 0.79
44 4 0.04
45 4 0.04
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATATCAA
Found at i:24638742 original size:18 final size:18
Alignment explanation
Indices: 24638719--24638780 Score: 85
Period size: 18 Copynumber: 3.6 Consensus size: 18
24638709 ATCAATGTAA
24638719 ACTTTCAAAATCATCAAC
1 ACTTTCAAAATCATCAAC
*
24638737 ACTTTCAAAA--ATGTAA-
1 ACTTTCAAAATCAT-CAAC
24638753 ACTTTCAAAATCATCAAC
1 ACTTTCAAAATCATCAAC
24638771 ACTTTCAAAA
1 ACTTTCAAAA
24638781 ATTGAGGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
16 12 0.32
17 4 0.11
18 22 0.58
ACGTcount: A:0.47, C:0.23, G:0.02, T:0.29
Consensus pattern (18 bp):
ACTTTCAAAATCATCAAC
Found at i:24638750 original size:34 final size:34
Alignment explanation
Indices: 24638712--24638782 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
24638702 TGAATTCATC
24638712 AATGTAAACTTTCAAAATCATCAACACTTTCAAA
1 AATGTAAACTTTCAAAATCATCAACACTTTCAAA
24638746 AATGTAAACTTTCAAAATCATCAACACTTTCAAA
1 AATGTAAACTTTCAAAATCATCAACACTTTCAAA
24638780 AAT
1 AAT
24638783 TGAGGCATGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.48, C:0.20, G:0.03, T:0.30
Consensus pattern (34 bp):
AATGTAAACTTTCAAAATCATCAACACTTTCAAA
Found at i:24638758 original size:16 final size:16
Alignment explanation
Indices: 24638712--24638762 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
24638702 TGAATTCATC
24638712 AATGTAAACTTTCAAA
1 AATGTAAACTTTCAAA
*
24638728 ATCAT-CAACACTTTCAAA
1 A--ATGTAA-ACTTTCAAA
24638746 AATGTAAACTTTCAAA
1 AATGTAAACTTTCAAA
24638762 A
1 A
24638763 TCATCAACAC
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
16 13 0.45
17 4 0.14
18 12 0.41
ACGTcount: A:0.49, C:0.18, G:0.04, T:0.29
Consensus pattern (16 bp):
AATGTAAACTTTCAAA
Found at i:24640177 original size:20 final size:19
Alignment explanation
Indices: 24640141--24640191 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
24640131 AAGGGCTATT
*
24640141 TTGTAAA-GTTGTAAAATAAA
1 TTGTAAATG-TGTGAAAT-AA
24640161 TTGTAAATGTGTGAAATAA
1 TTGTAAATGTGTGAAATAA
24640180 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
24640192 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 5 0.17
20 14 0.48
21 1 0.03
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:24642192 original size:15 final size:15
Alignment explanation
Indices: 24642172--24642202 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
24642162 CTTATTATTT
24642172 TTTATAAGGTCTTAC
1 TTTATAAGGTCTTAC
*
24642187 TTTATACGGTCTTAC
1 TTTATAAGGTCTTAC
24642202 T
1 T
24642203 AAGCTATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.16, G:0.13, T:0.48
Consensus pattern (15 bp):
TTTATAAGGTCTTAC
Found at i:24646546 original size:20 final size:19
Alignment explanation
Indices: 24646510--24646560 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
24646500 AATGGCTATT
*
24646510 TTGTAAA-GTTGTAAAATAAA
1 TTGTAAATG-TGTGAAAT-AA
24646530 TTGTAAATGTGTGAAATAA
1 TTGTAAATGTGTGAAATAA
24646549 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
24646561 GTGGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 5 0.17
20 14 0.48
21 1 0.03
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:24648534 original size:16 final size:18
Alignment explanation
Indices: 24648513--24648546 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
24648503 TCATACTAGC
24648513 ACCAAAAT-ATA-ATAGT
1 ACCAAAATGATAGATAGT
24648529 ACCAAAATGATAGATAGT
1 ACCAAAATGATAGATAGT
24648547 GTGACAAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 3 0.19
18 5 0.31
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (18 bp):
ACCAAAATGATAGATAGT
Found at i:24649245 original size:45 final size:45
Alignment explanation
Indices: 24649087--24649245 Score: 155
Period size: 45 Copynumber: 3.6 Consensus size: 45
24649077 CCGGTATTTC
* *
24649087 GCCTGCTAGGCTCGAA-GCTCG-ATA-TCATTTCATCGGCATTATA
1 GCCTGCTAGGCTCAAAGGCTCGAATAGT-ATTTCACCGGCATTATA
* * * * * ** *
24649130 GCCTTCTAGGGTGAAAGGCCCAAATAGTATTTCACCATCATTGTA
1 GCCTGCTAGGCTCAAAGGCTCGAATAGTATTTCACCGGCATTATA
* * *
24649175 GCCTGCTAGGGTCAAAGGC-CTGAATAGTATCTCACCGGCATCATA
1 GCCTGCTAGGCTCAAAGGCTC-GAATAGTATTTCACCGGCATTATA
24649220 GCCTGCTAGGCTCAAAGGCTCGAATA
1 GCCTGCTAGGCTCAAAGGCTCGAATA
24649246 TTACTGTACG
Statistics
Matches: 92, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
43 12 0.13
44 4 0.04
45 74 0.80
46 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (45 bp):
GCCTGCTAGGCTCAAAGGCTCGAATAGTATTTCACCGGCATTATA
Found at i:24652137 original size:14 final size:14
Alignment explanation
Indices: 24652118--24652149 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
24652108 AAGTGTTGGC
*
24652118 CACACGGGTAGAGA
1 CACACGGCTAGAGA
24652132 CACACGGCTAGAGA
1 CACACGGCTAGAGA
24652146 CACA
1 CACA
24652150 GCCGTGTGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.38, C:0.28, G:0.28, T:0.06
Consensus pattern (14 bp):
CACACGGCTAGAGA
Found at i:24656978 original size:30 final size:30
Alignment explanation
Indices: 24656942--24657072 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
24656932 GACAAGATTG
* * * * *
24656942 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
24656972 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
24657000 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
24657030 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
24657059 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
24657073 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:24657033 original size:58 final size:58
Alignment explanation
Indices: 24656942--24657072 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
24656932 GACAAGATTG
* * * * * *
24656942 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
24657000 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
24657059 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
24657073 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:24664989 original size:39 final size:39
Alignment explanation
Indices: 24664935--24665087 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
24664925 GAATGTTCGA
*
24664935 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
24664974 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
24665013 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
24665052 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
24665088 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:24665103 original size:40 final size:39
Alignment explanation
Indices: 24664936--24665117 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
24664926 AATGTTCGAG
* *
24664936 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
24664975 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
24665014 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
24665053 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
24665093 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
24665118 TGTTTTGAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:24673074 original size:39 final size:39
Alignment explanation
Indices: 24673020--24673171 Score: 236
Period size: 39 Copynumber: 3.9 Consensus size: 39
24673010 GAATGTTCGA
24673020 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
24673059 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCG-ATCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAAT-T
* *
24673098 ATGATATCC-GGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
* *
24673136 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
24673172 GGTTACCATA
Statistics
Matches: 104, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
38 36 0.35
39 51 0.49
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
Found at i:24673116 original size:77 final size:79
Alignment explanation
Indices: 24673021--24673171 Score: 261
Period size: 77 Copynumber: 1.9 Consensus size: 79
24673011 AATGTTCGAG
24673021 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
24673085 AATTGTGCGATCTA
66 AATTGTGCGATCTA
* *
24673099 TGATATCC-GGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
*
24673163 ATTTGTGCG
66 AATTGTGCG
24673172 GGTTACCATA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
77 44 0.64
78 25 0.36
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGATCTA
Found at i:24673187 original size:40 final size:40
Alignment explanation
Indices: 24673027--24673201 Score: 162
Period size: 39 Copynumber: 4.5 Consensus size: 40
24673017 CGAGTGATAT
* *** *
24673027 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAATTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
** *
24673066 CCGGGCTAAG-CCCGAAGGCAATTGTGCGA-TCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGT-TACCATAA
*** *
24673105 CC-GGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * *
24673143 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*
24673183 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
24673202 TGTTTTGAAT
Statistics
Matches: 121, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
38 36 0.30
39 45 0.37
40 40 0.33
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
Found at i:24675210 original size:42 final size:43
Alignment explanation
Indices: 24675164--24675261 Score: 110
Period size: 44 Copynumber: 2.3 Consensus size: 43
24675154 CCCCAGATAG
* * *
24675164 GGTCTTACACGAAA--TCATATACGATGCCAATGTTCCAGACAT
1 GGTCTTACACGAAATCTCAAAT-CGATGCCAACGTTCCAAACAT
* *
24675206 GGTCTTGCACGTAAATCTCAAATCGATGCCAACGTTCCAAACTT
1 GGTCTTACACG-AAATCTCAAATCGATGCCAACGTTCCAAACAT
*
24675250 AGTCTTACACGA
1 GGTCTTACACGA
24675262 TAACACATAT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
42 10 0.22
43 4 0.09
44 27 0.59
45 5 0.11
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (43 bp):
GGTCTTACACGAAATCTCAAATCGATGCCAACGTTCCAAACAT
Found at i:24679927 original size:17 final size:17
Alignment explanation
Indices: 24679905--24679937 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
24679895 ATTTTGGGCC
24679905 GTGTG-GGCC-ACATGG
1 GTGTGTGGCCTACATGG
24679920 GTGTGTGGCCTACATGG
1 GTGTGTGGCCTACATGG
24679937 G
1 G
24679938 CCCGCAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 4 0.25
17 7 0.44
ACGTcount: A:0.12, C:0.18, G:0.45, T:0.24
Consensus pattern (17 bp):
GTGTGTGGCCTACATGG
Found at i:24680856 original size:18 final size:18
Alignment explanation
Indices: 24680833--24680868 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
24680823 GAGCTTCCGC
*
24680833 AATTAATGACGTTTTAAA
1 AATTAATAACGTTTTAAA
*
24680851 AATTAATAACTTTTTAAA
1 AATTAATAACGTTTTAAA
24680869 GTGAATAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.42
Consensus pattern (18 bp):
AATTAATAACGTTTTAAA
Found at i:24688313 original size:2 final size:2
Alignment explanation
Indices: 24688308--24688341 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
24688298 TATATATATA
24688308 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
24688342 CATGTGTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:24689159 original size:39 final size:39
Alignment explanation
Indices: 24689108--24689302 Score: 295
Period size: 39 Copynumber: 5.0 Consensus size: 39
24689098 TGAGGTCCGC
24689108 AGGC-TTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
* * *
24689146 AGGCATTTGTGCTGGTGTTATATCCAGGCTAAGTCCCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
* *
24689185 AGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
*
24689224 AGGCATTTATGCTGGTATTATATCCGGGCTAAAGTCCCGC
1 AGGCATTTATGCTGGTATTATATCCGGGCT-AAGTCCCGA
24689264 AGGC-TTTATGCTGGTATTATATCCGGGCTTAAAGTCCCG
1 AGGCATTTATGCTGGTATTATATCCGGGC-T-AAGTCCCG
24689303 CATGCTTTCT
Statistics
Matches: 147, Mismatches: 7, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
38 4 0.03
39 121 0.82
40 22 0.15
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (39 bp):
AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
Found at i:24689457 original size:18 final size:18
Alignment explanation
Indices: 24689434--24689469 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
24689424 AAGTTGGTCA
24689434 GGTATGTATTATATACTT
1 GGTATGTATTATATACTT
24689452 GGTATGTATTATATACTT
1 GGTATGTATTATATACTT
24689470 TTATATGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.17, T:0.50
Consensus pattern (18 bp):
GGTATGTATTATATACTT
Found at i:24692212 original size:42 final size:43
Alignment explanation
Indices: 24692156--24692254 Score: 114
Period size: 42 Copynumber: 2.3 Consensus size: 43
24692146 AATCAAACAT
* * *
24692156 CGATGCCACTGTCCCAGATA-GGCTCTTACA-CAAAATCAG-ATA
1 CGATGCTAATGTCCCAGACATGG-TCTTACACCAAAAT-AGAATA
*
24692198 CGATGCTAATGTCCCAGACATGGTCTTACACGCAAAATAGAATT
1 CGATGCTAATGTCCCAGACATGGTCTTACAC-CAAAATAGAATA
24692242 CGATGCTAATGTC
1 CGATGCTAATGTC
24692255 ATAGATCTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
42 24 0.49
43 4 0.08
44 21 0.43
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (43 bp):
CGATGCTAATGTCCCAGACATGGTCTTACACCAAAATAGAATA
Found at i:24696111 original size:39 final size:40
Alignment explanation
Indices: 24696053--24696153 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
24696043 AAATTGAATG
* *
24696053 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
24696092 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
24696132 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
24696154 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:24696146 original size:40 final size:40
Alignment explanation
Indices: 24696053--24696229 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
24696043 AAATTGAATG
* * * * *
24696053 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
24696092 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
24696132 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
24696172 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
*
24696212 ATATCCGGG-TAAGTCCCG
1 ATATCCGGGCTAAGACCCG
24696230 TTGGCCTTGG
Statistics
Matches: 117, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 40 0.34
40 75 0.64
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:24703575 original size:39 final size:40
Alignment explanation
Indices: 24703517--24703617 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
24703507 AAATTGAATG
* *
24703517 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
24703556 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
24703596 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
24703618 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:24703610 original size:40 final size:40
Alignment explanation
Indices: 24703517--24703698 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
24703507 AAATTGAATG
* * * * *
24703517 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
24703556 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
24703596 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
24703636 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
24703676 ATATCCGGG-TAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
24703699 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 44 0.36
40 75 0.62
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:24716701 original size:40 final size:40
Alignment explanation
Indices: 24716656--24716820 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
24716646 CGGAATATAA
24716656 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
24716696 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
24716736 CCGG--ATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
24716774 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
24716813 CCGGATAT
1 CCGGATAT
24716821 CATTCAATTT
Statistics
Matches: 103, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
38 30 0.29
39 14 0.14
40 59 0.57
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:24716804 original size:78 final size:77
Alignment explanation
Indices: 24716672--24716819 Score: 192
Period size: 78 Copynumber: 1.9 Consensus size: 77
24716662 ATAATCACGT
*
24716672 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
24716737 CGGATAGCCACTA
65 CGGATAGCCACTA
* * ** * *
24716750 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
24716813 CCGGATA
64 CCGGATA
24716820 TCATTCAATT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
77 16 0.26
78 45 0.74
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (77 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATAGCCACTA
Found at i:24724710 original size:40 final size:40
Alignment explanation
Indices: 24724665--24724829 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
24724655 CGGAATATAA
24724665 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
24724705 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
24724745 CCGG--ATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
24724783 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
24724822 CCGGATAT
1 CCGGATAT
24724830 CATTCAATTT
Statistics
Matches: 103, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
38 30 0.29
39 14 0.14
40 59 0.57
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:24724813 original size:78 final size:77
Alignment explanation
Indices: 24724681--24724828 Score: 192
Period size: 78 Copynumber: 1.9 Consensus size: 77
24724671 ATAATCACGT
*
24724681 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
24724746 CGGATAGCCACTA
65 CGGATAGCCACTA
* * ** * *
24724759 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
24724822 CCGGATA
64 CCGGATA
24724829 TCATTCAATT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
77 16 0.26
78 45 0.74
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (77 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATAGCCACTA
Found at i:24742028 original size:24 final size:24
Alignment explanation
Indices: 24741996--24742042 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
24741986 TTATAACATG
* *
24741996 AAAATGACCATTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
24742020 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
24742043 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.26
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:24742104 original size:20 final size:20
Alignment explanation
Indices: 24742079--24742143 Score: 112
Period size: 20 Copynumber: 3.2 Consensus size: 20
24742069 ATTTTGATAA
24742079 ACATGGTATGTATGATATGC
1 ACATGGTATGTATGATATGC
*
24742099 ACATGGCATGTATGATATGC
1 ACATGGTATGTATGATATGC
*
24742119 ACATGATATGTATGATATGC
1 ACATGGTATGTATGATATGC
24742139 ACATG
1 ACATG
24742144 ATGTAATCAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.32
Consensus pattern (20 bp):
ACATGGTATGTATGATATGC
Found at i:24742229 original size:23 final size:23
Alignment explanation
Indices: 24742194--24742315 Score: 199
Period size: 23 Copynumber: 5.3 Consensus size: 23
24742184 GGAGGAAGTG
24742194 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAA-GGCTTATGCCCCAGTTAT
24742218 TAAAAGGCTTATGCCCCAGTTAT
1 TAAAAGGCTTATGCCCCAGTTAT
24742241 TAAAAGGCTTATGCCCCAGTTAT
1 TAAAAGGCTTATGCCCCAGTTAT
* *
24742264 TAAAGGGCTTATGCCCTAGTTAT
1 TAAAAGGCTTATGCCCCAGTTAT
* *
24742287 TAAAGGGCTTTTGCCCCAGTTAT
1 TAAAAGGCTTATGCCCCAGTTAT
24742310 TAAAAG
1 TAAAAG
24742316 AGGCTAGGCC
Statistics
Matches: 93, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
23 88 0.95
24 5 0.05
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.31
Consensus pattern (23 bp):
TAAAAGGCTTATGCCCCAGTTAT
Found at i:24742563 original size:31 final size:31
Alignment explanation
Indices: 24742528--24742591 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
24742518 CATTTACAGT
*
24742528 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGACCAGTAATATGAAATATGA
**
24742559 AAAGGCTTCGGACCAGTGTTATGAAATATGA
1 AAAGGCTTCGGACCAGTAATATGAAATATGA
24742590 AA
1 AA
24742592 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGACCAGTAATATGAAATATGA
Found at i:24751917 original size:24 final size:24
Alignment explanation
Indices: 24751876--24751947 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
24751866 GCTCTATCAT
**
24751876 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGGAGGCAAAGCC-CTTTTA
*
24751901 ATAACT-GAGGCAAAGCCCTTTTTG
1 ATAACTGGAGGCAAAGCCC-TTTTA
*
24751925 GTAAACTGG-GGCAAAGCCCTTTT
1 AT-AACTGGAGGCAAAGCCCTTTT
24751948 CGCACTTCAT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
23 1 0.03
24 18 0.45
25 20 0.50
26 1 0.03
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGAGGCAAAGCCCTTTTA
Found at i:24752197 original size:27 final size:27
Alignment explanation
Indices: 24752167--24752316 Score: 201
Period size: 27 Copynumber: 5.6 Consensus size: 27
24752157 ACCCCATAAA
* *
24752167 GGTATCTCGGTAATTCTACCTTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
24752194 GGTATTTCAGTATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
24752221 GGTATTTTGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
24752248 GGTATTTCGGTATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
24752275 GGTATTTCGGTAACTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
24752302 GGTATTTTGGTAATT
1 GGTATTTCGGTAATT
24752317 TTGTAAACTA
Statistics
Matches: 105, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:24752238 original size:54 final size:54
Alignment explanation
Indices: 24752167--24752308 Score: 230
Period size: 54 Copynumber: 2.6 Consensus size: 54
24752157 ACCCCATAAA
* *
24752167 GGTATCTCGGTAATTCTACCTTACAGGGGTATTTCAGTATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAG
* *
24752221 GGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAG
* *
24752275 GGTATTTCGGTAACTCTACCCTATAGGGGTATTT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTT
24752309 TGGTAATTTT
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 81 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (54 bp):
GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAG
Found at i:24752330 original size:54 final size:53
Alignment explanation
Indices: 24752175--24752341 Score: 183
Period size: 54 Copynumber: 3.1 Consensus size: 53
24752165 AAGGTATCTC
* * * **
24752175 GGTAATTCTACCTTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTT
1 GGTAACTCTACCCTACAGGGGTATTTCGGTATTTCTAAACTA-AAGGGTATTTT
* ** *
24752229 GGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GGTAACTCTACCCTACAGGGGTATTTCGGTATTTCTAAACTA-AAGGGTATTTT
* * *
24752283 GGTAACTCTACCCTATAGGGGTATTTTGGTAATTTTGTAAACT-AAGGGTATTTT
1 GGTAACTCTACCCTACAGGGGTATTTCGGT-A-TTTCTAAACTAAAGGGTATTTT
24752337 GGTAA
1 GGTAA
24752342 TTTTACAAGT
Statistics
Matches: 101, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
54 93 0.92
55 1 0.01
56 7 0.07
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.38
Consensus pattern (53 bp):
GGTAACTCTACCCTACAGGGGTATTTCGGTATTTCTAAACTAAAGGGTATTTT
Found at i:24752332 original size:81 final size:81
Alignment explanation
Indices: 24752167--24752343 Score: 205
Period size: 81 Copynumber: 2.2 Consensus size: 81
24752157 ACCCCATAAA
* * * **
24752167 GGTATCTCGGTAATTCTACCTTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTTGGT
1 GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAACTCTACCCTACAAGGGTATTTTGGT
**
24752232 AATTCTACCCTACAGG
66 AATTCTAAACTACAGG
* * * *
24752248 GGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAACTCTACCCTATAGGGGTATTTTGGT
1 GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAACTCTACCCTACAAGGGTATTTTGGT
*
24752313 AATTTTGTAAACTA-A-G
66 AA--TTCTAAACTACAGG
*
24752329 GGTATTTTGGTAATT
1 GGTATTTCGGTAATT
24752344 TTACAAGTCG
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
81 72 0.90
82 1 0.01
83 7 0.09
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (81 bp):
GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAACTCTACCCTACAAGGGTATTTTGGT
AATTCTAAACTACAGG
Found at i:24752493 original size:27 final size:27
Alignment explanation
Indices: 24752298--24752479 Score: 233
Period size: 27 Copynumber: 6.8 Consensus size: 27
24752288 CTCTACCCTA
**
24752298 TAGGGGTATTTTGGTAATTTTGTAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
* *
24752325 TAAGGGTATTTTGGTAATTTTAC-AAG
1 TAGGGGTATTTTGGTAATTTTACAAAC
* ** * *
24752351 TCGAGGGTA-TTCAGTAATTTCACAAAT
1 TAG-GGGTATTTTGGTAATTTTACAAAC
*
24752378 TAGGGGTATTTTGGTAAGTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
*
24752405 TAGGGGTATTTTGGTAATTTTATAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
24752432 TAGGGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
*
24752459 CAGGGGTATTTTGGTAATTTT
1 TAGGGGTATTTTGGTAATTTT
24752480 GCTAATCGAG
Statistics
Matches: 132, Mismatches: 20, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
26 19 0.14
27 113 0.86
ACGTcount: A:0.29, C:0.07, G:0.24, T:0.41
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTTTACAAAC
Found at i:24752537 original size:27 final size:27
Alignment explanation
Indices: 24752299--24752538 Score: 140
Period size: 27 Copynumber: 8.9 Consensus size: 27
24752289 TCTACCCTAT
24752299 AGGGGTATTTTGGTAATTTTG-TAAA-C
1 AGGGGTATTTTGGTAA-TTTGATAAATC
* * * *
24752325 TAAGGGTATTTTGGTAATTTTACAAGTC
1 -AGGGGTATTTTGGTAATTTGATAAATC
** * * *
24752353 -GAGGGTA-TTCAGTAATTTCACAAATT
1 AG-GGGTATTTTGGTAATTTGATAAATC
*
24752379 AGGGGTATTTTGGTAAGTTT-ACAAA-C
1 AGGGGTATTTTGGTAA-TTTGATAAATC
*
24752405 TAGGGGTATTTTGGTAATTTTATAAA-C
1 -AGGGGTATTTTGGTAATTTGATAAATC
* * *
24752432 TAGGGGTATTTTGGTAATTTTACAAACC
1 -AGGGGTATTTTGGTAATTTGATAAATC
*
24752460 AGGGGTATTTTGGTAATTTTGCT-AATC
1 AGGGGTATTTTGGTAA-TTTGATAAATC
****
24752487 -GAGGGTAAAACGGTAATTCTG-TAAATC
1 AG-GGGTATTTTGGTAATT-TGATAAATC
* *
24752514 AGGGGTACTTTGGTAATTTGGTAAA
1 AGGGGTATTTTGGTAATTTGATAAA
24752539 CTAACGTATT
Statistics
Matches: 171, Mismatches: 27, Indels: 30
0.75 0.12 0.13
Matches are distributed among these distances:
26 31 0.18
27 131 0.77
28 9 0.05
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTGATAAATC
Found at i:24752724 original size:17 final size:18
Alignment explanation
Indices: 24752704--24752738 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
24752694 AACTTATCCA
24752704 ATTGGG-CCACATGGCCC
1 ATTGGGCCCACATGGCCC
24752721 ATTGGGCCCACATGGCCC
1 ATTGGGCCCACATGGCCC
24752739 CTTTCGGCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.17, C:0.37, G:0.29, T:0.17
Consensus pattern (18 bp):
ATTGGGCCCACATGGCCC
Found at i:24754974 original size:19 final size:19
Alignment explanation
Indices: 24754950--24754987 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
24754940 GCGTGGCCAG
* *
24754950 GCAGTGTGACAGAGCCCAA
1 GCAGTGTGAAAAAGCCCAA
24754969 GCAGTGTGAAAAAGCCCAA
1 GCAGTGTGAAAAAGCCCAA
24754988 TTCGTATGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.24, G:0.29, T:0.11
Consensus pattern (19 bp):
GCAGTGTGAAAAAGCCCAA
Found at i:24759665 original size:27 final size:27
Alignment explanation
Indices: 24759624--24759677 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
24759614 TGTCATGTGA
*
24759624 AATTGAATGACAAATTATTATTACATG
1 AATTGAATGACAAATTACTATTACATG
**
24759651 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGACAAATTACTATTACATG
24759678 GGTTGTACCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (27 bp):
AATTGAATGACAAATTACTATTACATG
Found at i:24763466 original size:42 final size:41
Alignment explanation
Indices: 24763346--24763466 Score: 107
Period size: 43 Copynumber: 2.9 Consensus size: 41
24763336 TATCATACCA
** **
24763346 ATGCCATATCCAGATACGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCAGATATAGTCTTACATGAAATCTCATATCG
* * * * * *
24763387 ATGCTAATAGCCCAGTTATTGTCTTACACGAAATCTCATATTG
1 ATGC-CATA-TCCAGATATAGTCTTACATGAAATCTCATATCG
* *
24763430 ATGCCATATCCTAGATATAGTCTTTCATGTAATCTCA
1 ATGCCATATCC-AGATATAGTCTTACATGAAATCTCA
24763467 ACTAACCCTA
Statistics
Matches: 61, Mismatches: 16, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
41 6 0.10
42 26 0.43
43 29 0.48
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (41 bp):
ATGCCATATCCAGATATAGTCTTACATGAAATCTCATATCG
Found at i:24775894 original size:40 final size:40
Alignment explanation
Indices: 24775849--24775978 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
24775839 CGGAATACAA
24775849 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
24775889 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
24775929 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
24775969 CCGGATATAA
1 CCGGATATAA
24775979 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:24775993 original size:40 final size:40
Alignment explanation
Indices: 24775849--24776012 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
24775839 CGGAATACAA
* **
24775849 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
24775889 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
24775929 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
24775969 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
24776009 CCGG
1 CCGG
24776013 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:24776194 original size:124 final size:124
Alignment explanation
Indices: 24775984--24776318 Score: 568
Period size: 124 Copynumber: 2.7 Consensus size: 124
24775974 TATAATTTCC
* * *
24775984 AGCATAATTGTCTTCGGGGCTTAGCCCGGGTATCATTCAATTTCTCATGCACACATACATCAATA
1 AGCATAATCGCCTTCGGGACTTAGCCCGGGTATCATTCAATTTCTCATGCACACATACATCAATA
24776049 ATCATTGGACATACATATTTCATTTTCGTTACTAAGGCTCAAACACAATTATAATCACT
66 ATCATTGGACATACATATTTCATTTTCGTTACTAAGGCTCAAACACAATTATAATCACT
24776108 AGCATAATCGCCTTCGGGACTTAGCCCGGGTATCATTCAATTTCTCATGCACACATACATCAATA
1 AGCATAATCGCCTTCGGGACTTAGCCCGGGTATCATTCAATTTCTCATGCACACATACATCAATA
24776173 ATCATTGGACATACATATTTCATTTTCGTTACTAAGGCTCAAACACAATTATAATCACT
66 ATCATTGGACATACATATTTCATTTTCGTTACTAAGGCTCAAACACAATTATAATCACT
* * *
24776232 AGCATAATCGCCTTCGGGACTTAGCCCGGGTATCATTCGAA-TACTCATACACACATAAATCAAT
1 AGCATAATCGCCTTCGGGACTTAGCCCGGGTATCATTC-AATTTCTCATGCACACATACATCAAT
* *
24776296 AATCAAT--ACATCCATATTTCATT
65 AATCATTGGACATACATATTTCATT
24776319 CCACATAATT
Statistics
Matches: 202, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
122 15 0.07
124 185 0.92
125 2 0.01
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (124 bp):
AGCATAATCGCCTTCGGGACTTAGCCCGGGTATCATTCAATTTCTCATGCACACATACATCAATA
ATCATTGGACATACATATTTCATTTTCGTTACTAAGGCTCAAACACAATTATAATCACT
Found at i:24785218 original size:10 final size:10
Alignment explanation
Indices: 24785203--24785227 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
24785193 GAAAGTGATG
24785203 TAAATTGAAT
1 TAAATTGAAT
24785213 TAAATTGAAT
1 TAAATTGAAT
24785223 TAAAT
1 TAAAT
24785228 AAGAGAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (10 bp):
TAAATTGAAT
Found at i:24785525 original size:39 final size:38
Alignment explanation
Indices: 24785477--24785555 Score: 106
Period size: 39 Copynumber: 2.1 Consensus size: 38
24785467 TACTGGGTAC
*
24785477 CAACTTTACTTCG-GCTAGGCCGATGAGACACTAGGTGT
1 CAACTTTACTTCGAACTA-GCCGATGAGACACTAGGTGT
* *
24785515 CAACTATTACTTCGAACTATCCGATGAGACACTGGGTGT
1 CAACT-TTACTTCGAACTAGCCGATGAGACACTAGGTGT
24785554 CA
1 CA
24785556 TATTGGTGTG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
38 5 0.14
39 28 0.78
40 3 0.08
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (38 bp):
CAACTTTACTTCGAACTAGCCGATGAGACACTAGGTGT
Found at i:24786928 original size:20 final size:20
Alignment explanation
Indices: 24786900--24786937 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
24786890 TACAAAATAA
24786900 AATAAAC-AACACATTTCATC
1 AATAAACAAACA-ATTTCATC
*
24786920 AATACACAAACAATTTCA
1 AATAAACAAACAATTTCA
24786938 CATTCAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.53, C:0.24, G:0.00, T:0.24
Consensus pattern (20 bp):
AATAAACAAACAATTTCATC
Found at i:24788051 original size:20 final size:21
Alignment explanation
Indices: 24788017--24788055 Score: 55
Period size: 19 Copynumber: 1.9 Consensus size: 21
24788007 AGTGAAGGAA
24788017 ACACTTGAGGTAGTGGAGACAC
1 ACACTTGAGGTAGT-GAGACAC
24788039 ACAC-TGAGG-AGTGAGAC
1 ACACTTGAGGTAGTGAGAC
24788056 TCGACAAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.29
20 3 0.18
21 5 0.29
22 4 0.24
ACGTcount: A:0.33, C:0.18, G:0.33, T:0.15
Consensus pattern (21 bp):
ACACTTGAGGTAGTGAGACAC
Found at i:24790532 original size:43 final size:42
Alignment explanation
Indices: 24790484--24790579 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 42
24790474 TCCTAGACAT
* * * *
24790484 GGTCTTACATGTAATCAAACATCGATGCCATTGTCCCAGAAAG
1 GGTCTTACACGAAATCAAACA-CAATGCCAATGTCCCAGAAAG
* * * *
24790527 GGTCTTACACGAAATCAGATACAATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATCAAACACAATGCCAATGTCCCAGAAAG
24790569 GGTCTTACACG
1 GGTCTTACACG
24790580 CAAAACGGAT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 28 0.62
43 17 0.38
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAACACAATGCCAATGTCCCAGAAAG
Found at i:24797688 original size:47 final size:47
Alignment explanation
Indices: 24797458--24797821 Score: 541
Period size: 47 Copynumber: 7.7 Consensus size: 47
24797448 GATTTTACGC
* * *
24797458 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAATGGCTGATGT
1 GATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCGATGT
*
24797507 GGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CGATGT
1 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
24797555 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
*
24797602 GATGAATGTGAAATGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGT
24797650 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * *
24797697 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * * * *
24797744 GATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* *
24797791 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
24797822 TCCCGAAGGG
Statistics
Matches: 294, Mismatches: 17, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
46 24 0.08
47 167 0.57
48 66 0.22
49 34 0.12
51 3 0.01
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:24799996 original size:40 final size:40
Alignment explanation
Indices: 24799928--24800159 Score: 383
Period size: 40 Copynumber: 5.8 Consensus size: 40
24799918 GAGAATTGAG
* * * * *
24799928 AGTGATATATCCGGGCTAAATCCTGAAGACCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
24799968 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
24800008 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
24800048 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
24800088 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
24800128 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCA
24800160 ATCATGCTGG
Statistics
Matches: 183, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 183 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:24802853 original size:86 final size:86
Alignment explanation
Indices: 24802708--24802879 Score: 335
Period size: 86 Copynumber: 2.0 Consensus size: 86
24802698 GATAGTATGC
24802708 CGTGAAATTGAATTATTCATTGGAAAATGATTGATGTAGATTTGGCCAAGACCAAGTCTGTACAT
1 CGTGAAATTGAATTATTCATTGGAAAATGATTGATGTAGATTTGGCCAAGACCAAGTCTGTACAT
*
24802773 GATAGTATTTGTGGTATGTGA
66 GATAGTATATGTGGTATGTGA
24802794 CGTGAAATTGAATTATTCATTGGAAAATGATTGATGTAGATTTGGCCAAGACCAAGTCTGTACAT
1 CGTGAAATTGAATTATTCATTGGAAAATGATTGATGTAGATTTGGCCAAGACCAAGTCTGTACAT
24802859 GATAGTATATGTGGTATGTGA
66 GATAGTATATGTGGTATGTGA
24802880 AGTATATTTG
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.32, C:0.09, G:0.24, T:0.34
Consensus pattern (86 bp):
CGTGAAATTGAATTATTCATTGGAAAATGATTGATGTAGATTTGGCCAAGACCAAGTCTGTACAT
GATAGTATATGTGGTATGTGA
Found at i:24803046 original size:98 final size:94
Alignment explanation
Indices: 24802944--24803357 Score: 632
Period size: 98 Copynumber: 4.3 Consensus size: 94
24802934 GATTTTACGC
* *
24802944 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
24803009 TATATATATGTGATAAGGCCTAATGGCCGATGT
64 --TATATATGTGATAAGGCCGAATGGCCAATGT
24803042 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
* *
24803107 TATATATATGTGATAAGGCCTAATGGCCGATGT
64 --TATATATGTGATAAGGCCGAATGGCCAATGT
24803140 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTA
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
24803204 TATATGTGATAAGGCCGAATGGCCAATGT
66 TATATGTGATAAGGCCGAATGGCCAATGT
* *
24803233 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * *
24803298 TATATGTGATAGGGCCGAGTGGCCAACGT
66 TATATGTGATAAGGCCGAATGGCCAATGT
* *
24803327 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
24803358 TCCCGAAGGG
Statistics
Matches: 302, Mismatches: 11, Indels: 10
0.93 0.03 0.03
Matches are distributed among these distances:
93 84 0.28
94 62 0.21
96 43 0.14
97 5 0.02
98 108 0.36
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
TATATGTGATAAGGCCGAATGGCCAATGT
Found at i:24803080 original size:47 final size:47
Alignment explanation
Indices: 24802944--24803357 Score: 632
Period size: 47 Copynumber: 8.7 Consensus size: 47
24802934 GATTTTACGC
* *
24802944 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCGATGT
24802993 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
24803042 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
24803089 GATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGT
24803140 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* *
24803187 GATGAATGTG-AAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* *
24803233 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * * * *
24803280 GATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* *
24803327 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
24803358 TCCCGAAGGG
Statistics
Matches: 348, Mismatches: 10, Indels: 16
0.93 0.03 0.04
Matches are distributed among these distances:
46 44 0.13
47 196 0.56
49 58 0.17
51 50 0.14
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:24803235 original size:22 final size:22
Alignment explanation
Indices: 24803207--24803282 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
24803197 AAGTGTATAT
24803207 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
24803229 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
24803253 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
24803276 ATGTGAT
1 ATGTGAT
24803283 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:24803244 original size:191 final size:189
Alignment explanation
Indices: 24802944--24803357 Score: 634
Period size: 191 Copynumber: 2.2 Consensus size: 189
24802934 GATTTTACGC
* *
24802944 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
24803009 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
64 -ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* * * * *
24803074 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATG
128 CCGAATGGCCAATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCGAATGGCCAACG
24803139 T
189 T
24803140 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTG-T
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGAT
24803203 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
66 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
* *
24803268 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
131 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGT
* *
24803327 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
24803358 TCCCGAAGGG
Statistics
Matches: 205, Mismatches: 13, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
187 55 0.27
191 90 0.44
193 5 0.02
194 37 0.18
196 18 0.09
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (189 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGAT
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGT
Found at i:24807526 original size:14 final size:14
Alignment explanation
Indices: 24807507--24807535 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
24807497 TGTCAACCAT
24807507 ACCAACAATTTCTC
1 ACCAACAATTTCTC
24807521 ACCAACAATTTCTC
1 ACCAACAATTTCTC
24807535 A
1 A
24807536 TTCATGAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.34, G:0.00, T:0.28
Consensus pattern (14 bp):
ACCAACAATTTCTC
Found at i:24808233 original size:49 final size:49
Alignment explanation
Indices: 24808170--24808445 Score: 278
Period size: 49 Copynumber: 5.7 Consensus size: 49
24808160 AACACATCAA
* * *
24808170 GTCGATGCCCTGTCCAAGACAGGTCTTACACTGACTTTCATATAACGAG
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG
* * * * *
24808219 GTTGATGCCATGTCCAAGATAGGTCTTACACT-AGCTCTCATCTATCG-G
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTTCATATATCGAG
* *
24808267 TGTCGATGCCATGTCCCAGACAAGTCTTACACTGACTTTCATATAACGA-
1 -GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG
* * * * * *
24808316 GACGATGCCATGTCCCAGACAAGTCATACACTGGCTCTCATCTATC-AG
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG
* *
24808364 TGTCGATGCCATGTCCCAGACAGTTCTTACACT-AGCTTGT-ATATCTCGAG
1 -GTCGATGCCATGTCCCAGACAGGTCTTACACTGA-CTT-TCATATATCGAG
* *
24808414 GCCGATG-CATGTCCCAGACATGTCTTACACTG
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTG
24808446 GCACACATAT
Statistics
Matches: 187, Mismatches: 30, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
47 1 0.01
48 64 0.34
49 118 0.63
50 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG
Found at i:24808374 original size:97 final size:98
Alignment explanation
Indices: 24808170--24808447 Score: 359
Period size: 97 Copynumber: 2.9 Consensus size: 98
24808160 AACACATCAA
* * * ** *
24808170 GTCGATGCCCTGTCCAAGACAGGTCTTACACTGACTTTCATATAACGAGGTTGATGCCATGTCCA
1 GTCGATGCCATGTCCCAGACAAGTCTTACACTGACTTTCATATAACGAGGACGATGCCATGTCCC
* * * *
24808235 AGATAGGTCTTACACTAGCTCTCATCTATCGGT
66 AGACAAGTCTTACACTGGCTCTCATCTATCAGT
24808268 GTCGATGCCATGTCCCAGACAAGTCTTACACTGACTTTCATATAACGA-GACGATGCCATGTCCC
1 GTCGATGCCATGTCCCAGACAAGTCTTACACTGACTTTCATATAACGAGGACGATGCCATGTCCC
*
24808332 AGACAAGTCATACACTGGCTCTCATCTATCAGT
66 AGACAAGTCTTACACTGGCTCTCATCTATCAGT
** *
24808365 GTCGATGCCATGTCCCAGAC-AGTTCTTACACT-AGCTTGT-ATATCTCGAGGCCGATG-CATGT
1 GTCGATGCCATGTCCCAGACAAG-TCTTACACTGA-CTT-TCATATAACGAGGACGATGCCATGT
*
24808426 CCCAGACATGTCTTACACTGGC
63 CCCAGACAAGTCTTACACTGGC
24808448 ACACATATCA
Statistics
Matches: 160, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
96 3 0.02
97 105 0.66
98 52 0.32
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (98 bp):
GTCGATGCCATGTCCCAGACAAGTCTTACACTGACTTTCATATAACGAGGACGATGCCATGTCCC
AGACAAGTCTTACACTGGCTCTCATCTATCAGT
Found at i:24810356 original size:31 final size:31
Alignment explanation
Indices: 24810318--24810489 Score: 129
Period size: 31 Copynumber: 5.5 Consensus size: 31
24810308 TATTAGAACT
* *
24810318 AGAATCAAAATGAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
* *
24810349 AGAATCAAAATCAGAATAAGAATCA-G-AATT
1 AGAATCAAAATCAGAATCAGAATCAGGTAA-C
* * *
24810379 AGGAAACAGAATCAGAATCAGTATCAGGTAAC
1 A-GAATCAAAATCAGAATCAGAATCAGGTAAC
* * * *
24810411 AAAATCAGAATCAGAACCAGAATCA-G-AATT
1 AGAATCAAAATCAGAATCAGAATCAGGTAA-C
* * *
24810441 AGGTAA-CAGAATCAGAATCAGTATTAGGTAAC
1 A-G-AATCAAAATCAGAATCAGAATCAGGTAAC
*
24810473 AGAATCAGAATCAGAAT
1 AGAATCAAAATCAGAAT
24810490 GTGAATGCAA
Statistics
Matches: 112, Mismatches: 19, Indels: 20
0.74 0.13 0.13
Matches are distributed among these distances:
29 3 0.03
30 6 0.05
31 93 0.83
32 6 0.05
33 4 0.04
ACGTcount: A:0.50, C:0.13, G:0.19, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:24810388 original size:25 final size:25
Alignment explanation
Indices: 24810348--24810439 Score: 91
Period size: 25 Copynumber: 3.8 Consensus size: 25
24810338 AATCAGGTGA
*
24810348 CAGAATCA--AAATCAGAATAAGAAT
1 CAGAATCAGGAAA-CAGAATCAGAAT
*
24810372 CAGAATTAGGAAACAGAATCAGAAT
1 CAGAATCAGGAAACAGAATCAGAAT
* * *
24810397 CAGTATCAGGTAACAAAATCAGAAT
1 CAGAATCAGGAAACAGAATCAGAAT
* *
24810422 CAGAACCA-GAATCAGAAT
1 CAGAATCAGGAAACAGAAT
24810440 TAGGTAACAG
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
24 14 0.25
25 38 0.69
26 3 0.05
ACGTcount: A:0.52, C:0.15, G:0.16, T:0.16
Consensus pattern (25 bp):
CAGAATCAGGAAACAGAATCAGAAT
Found at i:24810399 original size:37 final size:37
Alignment explanation
Indices: 24810318--24810439 Score: 113
Period size: 37 Copynumber: 3.3 Consensus size: 37
24810308 TATTAGAACT
* * **
24810318 AGAATCAAAATGAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATAAGAATCAGAATCAGGAAACAGAATC
* *
24810355 AAAATCAGAATAAGAATCAGAATTAGGAAACAGAATC
1 AGAATCAGAATAAGAATCAGAATCAGGAAACAGAATC
* * * * *
24810392 AGAATCAGTATCAGGTAA-CAAAATCA-GAATCAGAACC
1 AGAATCAGAAT-AAG-AATCAGAATCAGGAAACAGAATC
24810429 AGAATCAGAAT
1 AGAATCAGAAT
24810440 TAGGTAACAG
Statistics
Matches: 69, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
37 59 0.86
38 8 0.12
39 2 0.03
ACGTcount: A:0.52, C:0.14, G:0.18, T:0.16
Consensus pattern (37 bp):
AGAATCAGAATAAGAATCAGAATCAGGAAACAGAATC
Found at i:24810417 original size:62 final size:62
Alignment explanation
Indices: 24810330--24810489 Score: 248
Period size: 62 Copynumber: 2.6 Consensus size: 62
24810320 AATCAAAATG
* * *
24810330 AGAATCAGAATCAGGTGACAGAATCAAAATCAGAATAAGAATCAGAATTAGGAAACAGAATC
1 AGAATCAGTATCAGGTAACAGAATCAGAATCAGAATAAGAATCAGAATTAGGAAACAGAATC
* ** *
24810392 AGAATCAGTATCAGGTAACAAAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAATC
1 AGAATCAGTATCAGGTAACAGAATCAGAATCAGAATAAGAATCAGAATTAGGAAACAGAATC
*
24810454 AGAATCAGTATTAGGTAACAGAATCAGAATCAGAAT
1 AGAATCAGTATCAGGTAACAGAATCAGAATCAGAAT
24810490 GTGAATGCAA
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 88 1.00
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.18
Consensus pattern (62 bp):
AGAATCAGTATCAGGTAACAGAATCAGAATCAGAATAAGAATCAGAATTAGGAAACAGAATC
Done.