Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 90 of 438
Found at i:24810445 original size:37 final size:37
Alignment explanation
Indices: 24810385--24810461 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
24810375 AATTAGGAAA
* *
24810385 CAGAATCAGAATCAGTATCAGGTAACAAAATCAGAAT
1 CAGAACCAGAATCAGAATCAGGTAACAAAATCAGAAT
* *
24810422 CAGAACCAGAATCAGAATTAGGTAACAGAATCAGAAT
1 CAGAACCAGAATCAGAATCAGGTAACAAAATCAGAAT
24810459 CAG
1 CAG
24810462 TATTAGGTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.17
Consensus pattern (37 bp):
CAGAACCAGAATCAGAATCAGGTAACAAAATCAGAAT
Found at i:24810456 original size:25 final size:25
Alignment explanation
Indices: 24810422--24810489 Score: 118
Period size: 25 Copynumber: 2.7 Consensus size: 25
24810412 AAATCAGAAT
*
24810422 CAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATTAGGTAA
*
24810447 CAGAATCAGAATCAGTATTAGGTAA
1 CAGAATCAGAATCAGAATTAGGTAA
24810472 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
24810490 GTGAATGCAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATTAGGTAA
Found at i:24810480 original size:19 final size:19
Alignment explanation
Indices: 24810330--24810461 Score: 101
Period size: 19 Copynumber: 6.7 Consensus size: 19
24810320 AATCAAAATG
*
24810330 AGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGGTAAC
* *
24810349 AGAATCAAAATCA-G-AATA
1 AGAATCAGAATCAGGTAA-C
* *
24810367 AGAATCAGAATTAGGAAAC
1 AGAATCAGAATCAGGTAAC
24810386 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAG----A--ATCAGGTAAC
*
24810411 AAAATCAGAATCA-G-AACC
1 AGAATCAGAATCAGGTAA-C
*
24810429 AGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGGTAAC
24810448 AGAATCAGAATCAG
1 AGAATCAGAATCAG
24810462 TATTAGGTAA
Statistics
Matches: 89, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
17 3 0.03
18 25 0.28
19 40 0.45
20 4 0.04
21 1 0.01
23 1 0.01
25 15 0.17
ACGTcount: A:0.50, C:0.14, G:0.19, T:0.17
Consensus pattern (19 bp):
AGAATCAGAATCAGGTAAC
Found at i:24810656 original size:27 final size:26
Alignment explanation
Indices: 24810609--24810659 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
24810599 CGAGGCTGCC
*
24810609 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
24810635 AGATATGTGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
24810660 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:24810935 original size:27 final size:27
Alignment explanation
Indices: 24810905--24811145 Score: 254
Period size: 27 Copynumber: 8.9 Consensus size: 27
24810895 AGGTAAAATG
* * *
24810905 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
24810932 GTAATTCTACCTTAC-AGGAGTATTTCA
1 GTAATTCTACCCTACAAGG-GTATTTCA
**
24810959 GTAATTCTACCCTAC-AGAGGTATTTTG
1 GTAATTCTACCCTACAAG-GGTATTTCA
*
24810986 GTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
24811012 GATAATTCTACCCTACAGGGGTATTTTA
1 G-TAATTCTACCCTACAAGGGTATTTCA
* **
24811040 GTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCA
* * **
24811067 GTATTTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
24811094 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
24811121 GCATTTCTACCCTACAAGGGTATTT
1 GTAATTCTACCCTACAAGGGTATTT
24811146 TGGTAATTTT
Statistics
Matches: 192, Mismatches: 17, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
26 4 0.02
27 184 0.96
28 4 0.02
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:24810997 original size:81 final size:79
Alignment explanation
Indices: 24810903--24811150 Score: 311
Period size: 81 Copynumber: 3.1 Consensus size: 79
24810893 AGAGGTAAAA
* * *
24810903 TGGTAATTT-TACCCCACAAGGGTATCTCAGTAATTCTACCTTACAGGAGTATTTCAGTAATTCT
1 TGGT-ATTTCTACCCTACAAGGGTATTTC-GTAATTCTACCCTACAGG-GTATTTCAGTAATTCT
24810967 ACCCTACAGAGGTATTT
63 ACCCTACAGAGGTATTT
*
24810984 TGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTA
1 TGGTATTTCTACCCTACAAGGGTATTTCG-TAATTCTACCCTACA-GGGTATTTCAGTAATTCTA
*
24811049 CCCTACAGGGGTATTT
64 CCCTACAGAGGTATTT
* * * * * *
24811065 TGGTATTTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGGCATTTCTA
1 TGGTATTTCTACCCTACAAGGGTA-TTTCGTAATTCTACCCTAC-AGGGTATTTCAGTAATTCTA
24811130 CCCTACA-AGGGTATTT
64 CCCTACAGA-GGTATTT
24811146 TGGTA
1 TGGTA
24811151 ATTTTGTAAA
Statistics
Matches: 148, Mismatches: 13, Indels: 12
0.86 0.08 0.07
Matches are distributed among these distances:
80 5 0.03
81 136 0.92
82 7 0.05
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (79 bp):
TGGTATTTCTACCCTACAAGGGTATTTCGTAATTCTACCCTACAGGGTATTTCAGTAATTCTACC
CTACAGAGGTATTT
Found at i:24811167 original size:27 final size:26
Alignment explanation
Indices: 24811134--24811586 Score: 384
Period size: 27 Copynumber: 16.8 Consensus size: 26
24811124 TTTCTACCCT
**
24811134 ACAAGGGTATTTTGGTAATTTTGTAA
1 ACAAGGGTATTTTGGTAATTTTACAA
* **** * * *
24811160 ATCGAGGGTAAAACGATAATTCTATAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
*
24811187 ATCAAGGGTACTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* * *** *
24811214 GTCGAGGGTATTTCAATAATTTTACAGG
1 -ACAAGGGTATTTTGGTAATTTTACA-A
* * ** *
24811242 TCGAGGGTATTTCAGTAATTTCACAA
1 ACAAGGGTATTTTGGTAATTTTACAA
* *
24811268 ATTAGGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* *
24811295 ACTAGAGGTATTTTGATAATTTTACAA
1 ACAAG-GGTATTTTGGTAATTTTACAA
*
24811322 ACTAGGGGTATTTTGGTAATTTTACAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
* *
24811349 ACTAGGGGTATTTTGGTAATTTTATAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
*
24811376 ACCAAGGGTATTTTAGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* **
24811403 ACCAGGGGTATTTTGGTAATTTTGTAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
24811430 ACCAAGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* * *
24811457 ACCAGGTGTATTTTGGTGATTTTATAA
1 ACAAGG-GTATTTTGGTAATTTTACAA
*
24811484 ACCAAGGGTATTTTAGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* *
24811511 ACCAGGGGTATTTTGGTAATTTTATAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
*
24811538 ACCAAGGGTATTTTAGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* *
24811565 ATTAGGGGTATTTTGGTAATTT
1 A-CAAGGGTATTTTGGTAATTT
24811587 GGTAAACTAA
Statistics
Matches: 350, Mismatches: 68, Indels: 17
0.80 0.16 0.04
Matches are distributed among these distances:
26 6 0.02
27 338 0.97
28 6 0.02
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (26 bp):
ACAAGGGTATTTTGGTAATTTTACAA
Found at i:24811593 original size:54 final size:54
Alignment explanation
Indices: 24811273--24811586 Score: 493
Period size: 54 Copynumber: 5.8 Consensus size: 54
24811263 CACAAATTAG
* * * * * * *
24811273 GGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
* *
24811327 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
*
24811381 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
* * *
24811435 GGGTATTTTGGTAATTTTACAAACCAGGTGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
24811489 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
**
24811543 GGGTATTTTAGTAATTTTACAAATTAGGGGTATTTTGGTAATTT
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
24811587 GGTAAACTAA
Statistics
Matches: 243, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 243 1.00
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:24817701 original size:21 final size:20
Alignment explanation
Indices: 24817664--24817702 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
24817654 CACTTGAAAC
* *
24817664 GGGCACACACTCTTGTGGAA
1 GGGCACACACCCGTGTGGAA
24817684 GGGCAACACACCCGTGTGG
1 GGGC-ACACACCCGTGTGG
24817703 TCCTATTGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.23, C:0.28, G:0.33, T:0.15
Consensus pattern (20 bp):
GGGCACACACCCGTGTGGAA
Found at i:24819021 original size:49 final size:49
Alignment explanation
Indices: 24818911--24819233 Score: 318
Period size: 49 Copynumber: 6.7 Consensus size: 49
24818901 GGGATAAGAC
* * ** *
24818911 GCCGATGCCATGTCCCAGACATGGTATTACACTAACTAACATAT--C-AA
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGACTTTCATATAACGAG
* * * * ** *
24818958 GTCAATGCCATGTCCTAGACAGGTTTTACACCAACTTTCATATAATGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGAG
24819007 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGAG
* * * * * *
24819056 GCTGATACCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATC-AG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGAG
*
24819104 TGTCGATGCCATGTCCCAGA-AGGTCTTACACTGACTTTCATATAACGAG
1 -GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGAG
* * * * *
24819153 TCCGATGCCATGTCCCAAACAGGTCTTACACT-AGCTCTCATCTATCG-G
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTTCATATAACGAG
** *
24819201 TGTAGATGCCATGTCCCAGATAGGTCTTACACT
1 -GCCGATGCCATGTCCCAGACAGGTCTTACACT
24819234 AACACATAAC
Statistics
Matches: 228, Mismatches: 40, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
46 18 0.08
47 18 0.08
48 42 0.18
49 150 0.66
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGAG
Found at i:24819168 original size:97 final size:98
Alignment explanation
Indices: 24818913--24819326 Score: 393
Period size: 97 Copynumber: 4.3 Consensus size: 98
24818903 GATAAGACGC
* * ** * * *
24818913 CGATGCCATGTCCCAGACATGGTATTACACTAACTAACATAT--CAAGT-CAATGCCATGTCCTA
1 CGATGCCATGTCCCAGACA-GGTCTTACACTGACTTTCATATAACGAGTCCGATGCCATGTCCCA
* * * * * * *
24818975 GACAGGTTTTACACCAACTTTCATATAATGAG-GC
65 GACAGGTCTTACACTAGCTCTCATCT-ATCAGTGT
* * *
24819009 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGAGGCTGATACCATGTCCCAG
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGAGTCCGATGCCATGTCCCAG
*
24819074 ACAGGTCTTACACTGGCTCTCATCTATCAGTGT
66 ACAGGTCTTACACTAGCTCTCATCTATCAGTGT
*
24819107 CGATGCCATGTCCCAGA-AGGTCTTACACTGACTTTCATATAACGAGTCCGATGCCATGTCCCAA
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGAGTCCGATGCCATGTCCCAG
*
24819171 ACAGGTCTTACACTAGCTCTCATCTATCGGTGT
66 ACAGGTCTTACACTAGCTCTCATCTATCAGTGT
* * * * * * **
24819204 AGATGCCATGTCCCAGATAGGTCTTACACT-A---ACACATAACAAG-CTGATGCCATGTCCCCC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGAGTCCGATGCCATGTCCCAG
* * * * * * *
24819264 ATAGGTTTTACACTAGCTTTTATATCTCA-TGG
66 ACAGGTCTTACACTAGCTCTCATCTATCAGTGT
*
24819296 CAGATG-CATGTCCCAGACATGTCTTACACTG
1 C-GATGCCATGTCCCAGACAGGTCTTACACTG
24819327 GCACACATAT
Statistics
Matches: 269, Mismatches: 42, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
92 24 0.09
93 40 0.15
94 9 0.03
95 18 0.07
96 19 0.07
97 98 0.36
98 61 0.23
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (98 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAACGAGTCCGATGCCATGTCCCAG
ACAGGTCTTACACTAGCTCTCATCTATCAGTGT
Found at i:24819216 original size:146 final size:144
Alignment explanation
Indices: 24818914--24819261 Score: 386
Period size: 146 Copynumber: 2.4 Consensus size: 144
24818904 ATAAGACGCC
* *
24818914 GATGCCATGTCCCAGACATGGTATTACACTAACTAACATATCAAGTCAATGCCATGTCCTAGACA
1 GATGCCATGTCCCAGACA-GGTCTTACACTAACTAACATATCAAGTCAATGCCATGTCCCAGACA
* * * *
24818979 GGTTTTACACCAACTTTCATATAATGAGGCCGATGCCATGTCCCAGACAGGTCTTACACTGACTT
65 GGTCTTACACCAACTTTCATATAACGAGGCCGATGCCATGTCCCAAACAGGTCTTACACTGACTC
24819044 TCATATAACGAGGCT
130 TCATATAACGAGGCT
* ** ** * *
24819059 GATACCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCAGTGTCGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACAGGTCTTACACTAACTAACA--TATCA-AGTCAATGCCATGTCCCAGA
** *
24819124 -AGGTCTTACACTGACTTTCATATAACGAGTCCGATGCCATGTCCCAAACAGGTCTTACACT-AG
63 CAGGTCTTACACCAACTTTCATATAACGAGGCCGATGCCATGTCCCAAACAGGTCTTACACTGA-
* *
24819187 CTCTCATCTATCG-GTG-T
127 CTCTCATATAACGAG-GCT
* * *
24819204 AGATGCCATGTCCCAGATAGGTCTTACACTAAC--ACATAACAAG-CTGATGCCATGTCCC
1 -GATGCCATGTCCCAGACAGGTCTTACACTAACTAACATATCAAGTC-AATGCCATGTCCC
24819262 CCATAGGTTT
Statistics
Matches: 171, Mismatches: 25, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
140 1 0.01
141 14 0.08
142 4 0.02
144 16 0.09
145 20 0.12
146 99 0.58
147 17 0.10
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (144 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAACTAACATATCAAGTCAATGCCATGTCCCAGACAG
GTCTTACACCAACTTTCATATAACGAGGCCGATGCCATGTCCCAAACAGGTCTTACACTGACTCT
CATATAACGAGGCT
Found at i:24821757 original size:40 final size:39
Alignment explanation
Indices: 24821636--24821759 Score: 185
Period size: 39 Copynumber: 3.2 Consensus size: 39
24821626 TGTGAATGAA
*
24821636 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
24821675 TGTGCTAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
24821714 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
24821754 TGTGCG
1 TGTGCG
24821760 GGTTACCATA
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 58 0.77
40 17 0.23
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:24821775 original size:40 final size:40
Alignment explanation
Indices: 24821653--24821789 Score: 143
Period size: 39 Copynumber: 3.5 Consensus size: 40
24821643 ATTGTGATAT
* * ** *
24821653 CCGGGCTAAG-CCCGAAGGCAATTGTGCTAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*** *
24821692 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * *
24821731 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*
24821771 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
24821790 TGTTTTGAAC
Statistics
Matches: 85, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 45 0.53
40 40 0.47
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
Found at i:24821775 original size:79 final size:79
Alignment explanation
Indices: 24821636--24821789 Score: 202
Period size: 79 Copynumber: 1.9 Consensus size: 79
24821626 TGTGAATGAA
* ** *
24821636 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCTAGCTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
24821701 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * * *
24821714 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTA
*
24821779 TGTCCCGAAGG
65 AGTCCCGAAGG
24821790 TGTTTTGAAC
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 25 0.39
79 31 0.48
80 8 0.12
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:24826089 original size:32 final size:32
Alignment explanation
Indices: 24826048--24826112 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
24826038 AATTAAAGCC
24826048 ACATGAGAAAAATTATCCGACCCATGGTCTCG
1 ACATGAGAAAAATTATCCGACCCATGGTCTCG
24826080 ACATGAGAAAAATTATCCGACCCATGGTCTCG
1 ACATGAGAAAAATTATCCGACCCATGGTCTCG
24826112 A
1 A
24826113 ATTGGCTGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (32 bp):
ACATGAGAAAAATTATCCGACCCATGGTCTCG
Found at i:24829657 original size:40 final size:39
Alignment explanation
Indices: 24829536--24829659 Score: 185
Period size: 39 Copynumber: 3.2 Consensus size: 39
24829526 TGTGAATGAA
*
24829536 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
24829575 TGTGCTAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
24829614 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
24829654 TGTGCG
1 TGTGCG
24829660 GGTTACCATA
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 58 0.77
40 17 0.23
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:24829675 original size:40 final size:40
Alignment explanation
Indices: 24829553--24829689 Score: 143
Period size: 39 Copynumber: 3.5 Consensus size: 40
24829543 ATTGTGATAT
* * ** *
24829553 CCGGGCTAAG-CCCGAAGGCAATTGTGCTAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*** *
24829592 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * *
24829631 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*
24829671 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
24829690 TGTTTTGAAC
Statistics
Matches: 85, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 45 0.53
40 40 0.47
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
Found at i:24829675 original size:79 final size:79
Alignment explanation
Indices: 24829536--24829689 Score: 202
Period size: 79 Copynumber: 1.9 Consensus size: 79
24829526 TGTGAATGAA
* ** *
24829536 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCTAGCTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
24829601 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * * *
24829614 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTA
*
24829679 TGTCCCGAAGG
65 AGTCCCGAAGG
24829690 TGTTTTGAAC
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 25 0.39
79 31 0.48
80 8 0.12
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:24832845 original size:50 final size:50
Alignment explanation
Indices: 24832765--24832863 Score: 189
Period size: 50 Copynumber: 2.0 Consensus size: 50
24832755 AAACAATCAT
*
24832765 ACCTTTCAAAATCAATTATCATTCATATAAAAAACTATTCAAATACATTA
1 ACCTTTCAAAATCAATTATCATTCAAATAAAAAACTATTCAAATACATTA
24832815 ACCTTTCAAAATCAATTATCATTCAAATAAAAAACTATTCAAATACATT
1 ACCTTTCAAAATCAATTATCATTCAAATAAAAAACTATTCAAATACATT
24832864 CATACAGTCC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.33
Consensus pattern (50 bp):
ACCTTTCAAAATCAATTATCATTCAAATAAAAAACTATTCAAATACATTA
Found at i:24835982 original size:28 final size:28
Alignment explanation
Indices: 24835949--24836002 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
24835939 GGGAAGCGAA
24835949 AATCAAGGAACCACTTCAATAGAAGAGG
1 AATCAAGGAACCACTTCAATAGAAGAGG
* *
24835977 AATCAATGAACCACTTCAATATAAGA
1 AATCAAGGAACCACTTCAATAGAAGA
24836003 TAAAATCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.48, C:0.19, G:0.15, T:0.19
Consensus pattern (28 bp):
AATCAAGGAACCACTTCAATAGAAGAGG
Found at i:24839027 original size:48 final size:48
Alignment explanation
Indices: 24838777--24838999 Score: 394
Period size: 48 Copynumber: 4.6 Consensus size: 48
24838767 TGAGATCCTA
24838777 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
24838825 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
* *
24838873 TGTAAGACCATGTTTGGGACATAGCATCGGCGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
* *
24838921 TGTAAGACCATGAT-TGGGACATGGCATCGGCGATGATATGTGTGCTAG
1 TGTAAGACCATG-TCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
24838969 TGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGTAAGACCATGTCTGGGACATGGCATCGGC
24839000 ACCGATATGA
Statistics
Matches: 168, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 1 0.01
48 166 0.99
49 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
Found at i:24839033 original size:48 final size:48
Alignment explanation
Indices: 24838779--24839035 Score: 205
Period size: 48 Copynumber: 5.4 Consensus size: 48
24838769 AGATCCTATG
* ** * * * *
24838779 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAGTG
1 TAAGACCATATCTGGGACATGGCATCGGCGACGATATGAGTACTAGTA
* ** * * * *
24838827 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAGTG
1 TAAGACCATATCTGGGACATGGCATCGGCGACGATATGAGTACTAGTA
* * * ** * * * *
24838875 TAAGACCATGTTTGGGACATAGCATCGGCGTTGATATGTGTGCCAGTG
1 TAAGACCATATCTGGGACATGGCATCGGCGACGATATGAGTACTAGTA
* * * *
24838923 TAAGACCATGAT-TGGGACATGGCATCGGCGATGATATGTGTGCTAGTG
1 TAAGACCAT-ATCTGGGACATGGCATCGGCGACGATATGAGTACTAGTA
* *
24838971 TAAGACCATGTCTGGGACATGGCATCGGC-ACCGATATGAG-ACTTCGTA
1 TAAGACCATATCTGGGACATGGCATCGGCGA-CGATATGAGTAC-TAGTA
24839019 TAAGACCATATCTGGGA
1 TAAGACCATATCTGGGA
24839036 TATTTCGTCG
Statistics
Matches: 192, Mismatches: 13, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
47 3 0.02
48 188 0.98
49 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.26
Consensus pattern (48 bp):
TAAGACCATATCTGGGACATGGCATCGGCGACGATATGAGTACTAGTA
Found at i:24839586 original size:10 final size:11
Alignment explanation
Indices: 24839542--24839599 Score: 64
Period size: 11 Copynumber: 5.2 Consensus size: 11
24839532 ATTAGATAAA
24839542 TATTATTTTAT
1 TATTATTTTAT
*
24839553 TAATATTTTAAT
1 TATTATTTT-AT
* *
24839565 AAGATATTTTAT
1 TA-TTATTTTAT
24839577 TATT-TTTTAT
1 TATTATTTTAT
24839587 TATTATTTTAT
1 TATTATTTTAT
24839598 TA
1 TA
24839600 GTATATAAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
10 10 0.25
11 17 0.43
12 6 0.15
13 7 0.17
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:24841511 original size:46 final size:46
Alignment explanation
Indices: 24841444--24841576 Score: 221
Period size: 46 Copynumber: 2.9 Consensus size: 46
24841434 CTCTGAAATG
* *
24841444 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
1 AAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGACAGA
24841490 AAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGACAGA
1 AAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGACAGA
* * *
24841536 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 AAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATG
24841577 TCAAAGATAA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.20
Consensus pattern (46 bp):
AAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGACAGA
Found at i:24846629 original size:19 final size:17
Alignment explanation
Indices: 24846600--24846650 Score: 52
Period size: 19 Copynumber: 2.9 Consensus size: 17
24846590 ATAAAGAAAT
24846600 GAAAA-AAAAAAAAAGA
1 GAAAAGAAAAAAAAAGA
*
24846616 GAATATGAAGAAAAACAA-A
1 GAA-AAGAA-AAAAA-AAGA
24846635 GAAAAGAAAAAAAAAG
1 GAAAAGAAAAAAAAAG
24846651 TGTTCATTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
16 5 0.18
17 6 0.21
18 6 0.21
19 9 0.32
20 2 0.07
ACGTcount: A:0.78, C:0.02, G:0.16, T:0.04
Consensus pattern (17 bp):
GAAAAGAAAAAAAAAGA
Found at i:24847909 original size:29 final size:29
Alignment explanation
Indices: 24847808--24847901 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
24847798 GTGACGAGAT
24847808 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
24847837 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
24847866 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
24847895 CGGCACT
1 TGGCACT
24847902 GGGTGTGCGA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:24847926 original size:58 final size:58
Alignment explanation
Indices: 24847804--24847938 Score: 166
Period size: 58 Copynumber: 2.3 Consensus size: 58
24847794 TACGGTGACG
* * *
24847804 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
24847861 ATATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
24847919 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
24847939 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
57 3 0.05
58 62 0.94
59 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:24855769 original size:29 final size:29
Alignment explanation
Indices: 24855736--24855818 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
24855726 GTGACGAGAT
24855736 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
24855765 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
24855794 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
24855819 AAATACGGCA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:24855858 original size:59 final size:58
Alignment explanation
Indices: 24855732--24855867 Score: 159
Period size: 59 Copynumber: 2.3 Consensus size: 58
24855722 TACGGTGACG
* * *
24855732 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
24855789 ATATATGGCACTAAGTGTGCATGCTGGAAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGG-AAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
24855848 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
24855868 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
57 3 0.05
58 22 0.33
59 40 0.61
60 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:24875814 original size:14 final size:14
Alignment explanation
Indices: 24875789--24875831 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
24875779 GTACTAAATT
24875789 ATATCA-AAATTAA
1 ATATCATAAATTAA
24875802 AGTAT-ATAAATTAA
1 A-TATCATAAATTAA
*
24875816 ATCTCATAAATTAA
1 ATATCATAAATTAA
24875830 AT
1 AT
24875832 CTCAAATTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 4 0.15
14 22 0.85
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (14 bp):
ATATCATAAATTAA
Found at i:24875832 original size:14 final size:14
Alignment explanation
Indices: 24875807--24875835 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
24875797 ATTAAAGTAT
24875807 ATAAATTAAATCTC
1 ATAAATTAAATCTC
24875821 ATAAATTAAATCTC
1 ATAAATTAAATCTC
24875835 A
1 A
24875836 AATTTGAGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAAATTAAATCTC
Found at i:24881224 original size:27 final size:27
Alignment explanation
Indices: 24881194--24881348 Score: 96
Period size: 27 Copynumber: 5.7 Consensus size: 27
24881184 GCAGGGTTCA
*
24881194 CCACAAATGCTATCCTTTCATAATTCG
1 CCACAAAGGCTATCCTTTCATAATTCG
* * * *
24881221 CCACAAAGGCTTTTCTTTCATGATTCT
1 CCACAAAGGCTATCCTTTCATAATTCG
* * * *
24881248 CCATAAAAGGCTTTCCTTTTATATTTCAG
1 CCA-CAAAGGCTATCCTTTCATAATTC-G
* * * * *
24881277 -CACAAAAGATTTCCTTTCATATTTCA
1 CCACAAAGGCTATCCTTTCATAATTCG
* * * * **
24881303 CCATAAAGGCTTTCATTTCATATTTTT
1 CCACAAAGGCTATCCTTTCATAATTCG
*
24881330 CCACAAAGGCTTTCCTTTC
1 CCACAAAGGCTATCCTTTC
24881349 TTGACATGTT
Statistics
Matches: 101, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
27 81 0.80
28 20 0.20
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
CCACAAAGGCTATCCTTTCATAATTCG
Found at i:24881281 original size:55 final size:54
Alignment explanation
Indices: 24881190--24881348 Score: 158
Period size: 54 Copynumber: 2.9 Consensus size: 54
24881180 CATTGCAGGG
* * * * * * *
24881190 TTCACCACAAATGCTATCCTTTCATAATTCGCCACAAAGGCTTTTCTTTCATGA-
1 TTCACCATAAAGGCTTTCATTTCATATTTCACCACAAAGGCTTTCCTTTCAT-AT
* * * * * *
24881244 TTCTCCATAAAAGGCTTTCCTTTTATATTTCAGCACAAAAGATTTCCTTTCATAT
1 TTCACCAT-AAAGGCTTTCATTTCATATTTCACCACAAAGGCTTTCCTTTCATAT
**
24881299 TTCACCATAAAGGCTTTCATTTCATATTTTTCCACAAAGGCTTTCCTTTC
1 TTCACCATAAAGGCTTTCATTTCATATTTCACCACAAAGGCTTTCCTTTC
24881349 TTGACATGTT
Statistics
Matches: 84, Mismatches: 19, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
54 42 0.50
55 42 0.50
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.40
Consensus pattern (54 bp):
TTCACCATAAAGGCTTTCATTTCATATTTCACCACAAAGGCTTTCCTTTCATAT
Found at i:24883883 original size:24 final size:24
Alignment explanation
Indices: 24883847--24883892 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
24883837 ATCGTTACTA
* * * *
24883847 AGCTTGTATGAGTTTACTGATTAC
1 AGCTCGTAAGAGTATACCGATTAC
24883871 AGCTCGTAAGAGTATACCGATT
1 AGCTCGTAAGAGTATACCGATT
24883893 TAGTGCTCGT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (24 bp):
AGCTCGTAAGAGTATACCGATTAC
Found at i:24887474 original size:40 final size:40
Alignment explanation
Indices: 24887429--24887636 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
24887419 CGGAATACAA
*
24887429 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
24887469 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
24887509 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *** * *
24887549 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAAT-GCCTTCGGGTCTTAGC
** * ** * * *
24887589 CCGGATATAATTACTAGCATAAATGTCTTCCGGACTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
24887629 CCGGATAT
1 CCGGATAT
24887637 CATTCAATTG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.02
40 134 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:24892722 original size:27 final size:27
Alignment explanation
Indices: 24892681--24892734 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
24892671 TGTCATGTGA
*
24892681 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTGTTACATG
**
24892708 AATTGAATGTTAAATTACTGTTACATG
1 AATTGAATGGCAAATTACTGTTACATG
24892735 GGTTGTATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTGTTACATG
Found at i:24893058 original size:49 final size:49
Alignment explanation
Indices: 24892992--24893212 Score: 271
Period size: 49 Copynumber: 4.4 Consensus size: 49
24892982 GTCATGTGTA
* *
24892992 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATGATTGGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTG
* * * * * *
24893041 TAGTACTATGTTCAGGCTACTATGTGTACCCGATAACTTTGATCACGTGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA--TTGGTCACATGTG
* * ** *
24893092 TAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACATGTG
* * *
24893142 TAGTACTAAGTGCAGGATACTACCTGTACCGGATAATTGGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTG
24893191 TAGTACTAAGTGCAGGCTACTA
1 TAGTACTAAGTGCAGGCTACTA
24893213 TGCGTACCAG
Statistics
Matches: 144, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
49 63 0.44
50 42 0.29
51 39 0.27
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTG
Found at i:24893224 original size:99 final size:99
Alignment explanation
Indices: 24892992--24893224 Score: 297
Period size: 99 Copynumber: 2.3 Consensus size: 99
24892982 GTCATGTGTA
* * * *
24892992 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATGATTGGTCGCATGTGTAGTACTATGTTCAGG
1 TAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACTAAGTGCAGG
* ** *
24893057 CTACTATGTGTACCCGATAACTTTGATCACGTGTG
66 ATACTACCTGTACCCGATAAC-TTGATCACATGTG
* * *
24893092 TAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAG
1 TAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATT-GGTCACATGTGTAGTACTAAGTGCAG
* * *
24893157 GATACTACCTGTACCGGATAA-TTGGTCGCATGTG
65 GATACTACCTGTACCCGATAACTTGATCACATGTG
* *
24893191 TAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 TAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
24893225 AGCCTTGTCT
Statistics
Matches: 115, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
99 41 0.36
100 35 0.30
101 39 0.34
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (99 bp):
TAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACTAAGTGCAGG
ATACTACCTGTACCCGATAACTTGATCACATGTG
Found at i:24900127 original size:40 final size:39
Alignment explanation
Indices: 24899967--24900129 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
24899957 TGTGTATGAA
*
24899967 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
24900006 TGTGCCAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
24900045 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
24900084 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
24900124 TGTGCG
1 TGTGCG
24900130 GGTTACCATA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:24900145 original size:40 final size:40
Alignment explanation
Indices: 24899984--24900165 Score: 154
Period size: 39 Copynumber: 4.6 Consensus size: 40
24899974 ATTGTGATAT
* * *** *
24899984 CCGGGCTAAG-CCCGAAGGCAATTGTGCCAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * * ** *
24900023 CCGGGCTAAG-CCCGAAGGCAATGGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *** *
24900062 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
24900101 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
24900141 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
24900166 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 80 0.64
40 45 0.36
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:24907967 original size:25 final size:26
Alignment explanation
Indices: 24907905--24907967 Score: 76
Period size: 25 Copynumber: 2.4 Consensus size: 26
24907895 TATTTTCTCA
*
24907905 AAAATTTAAAAATTATTAATGATTCAAT
1 AAAA-TTAAAAATTA-TAATGATTAAAT
24907933 -AAATTGAAAAATTA-AATGATTAAAT
1 AAAATT-AAAAATTATAATGATTAAAT
24907958 AAAATTAAAA
1 AAAATTAAAA
24907968 TTTAGGAGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
25 14 0.44
26 7 0.22
27 11 0.34
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (26 bp):
AAAATTAAAAATTATAATGATTAAAT
Found at i:24908804 original size:131 final size:132
Alignment explanation
Indices: 24908565--24908804 Score: 317
Period size: 131 Copynumber: 1.8 Consensus size: 132
24908555 ATGAAATATG
*
24908565 ATTAAAACTAATACTAATTCTATGCTAAATTGATAAAAATTAATATATAAATTATAATAGATATA
1 ATTAAAACTAATACTAACTCTATGCTAAATTGATAAAAATTAATATAT-AATTATAATAGATATA
* * **
24908630 ATTATTTATTAAACATTATCGTCTTATTATTATTATTTGAAAAAAATTATCAAATAAAATATGAT
65 ATTATATATTAAACATTATCATCTTATTATTATTAACTGAAAAAAATTATCAAATAAAATATGAT
24908695 TAA
130 TAA
* * * *
24908698 ATTAACACTAATCCTAACTCTATG-TAAAGTTGATAATAATTAATATAT-ATTATAATGGATATA
1 ATTAAAACTAATACTAACTCTATGCTAAA-TTGATAAAAATTAATATATAATTATAATAGATATA
* *
24908761 ATTATATATTAATA-ATTATCATCTTTTTTTTATTAAACT-AAAAA
65 ATTATATATTAA-ACATTATCATCTTATTATTATT-AACTGAAAAA
24908805 CATTTATTCT
Statistics
Matches: 93, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
131 47 0.51
132 7 0.08
133 39 0.42
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.42
Consensus pattern (132 bp):
ATTAAAACTAATACTAACTCTATGCTAAATTGATAAAAATTAATATATAATTATAATAGATATAA
TTATATATTAAACATTATCATCTTATTATTATTAACTGAAAAAAATTATCAAATAAAATATGATT
AA
Found at i:24911719 original size:40 final size:40
Alignment explanation
Indices: 24911634--24911784 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
24911624 AATTGAATGA
* * * **
24911634 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
24911674 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
24911715 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
24911754 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
24911785 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:24911798 original size:40 final size:40
Alignment explanation
Indices: 24911671--24911800 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
24911661 ATGCTGGAAA
* * *
24911671 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
24911711 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
24911751 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
24911791 TTATATCCGG
1 TTATATCCGG
24911801 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:24919020 original size:40 final size:39
Alignment explanation
Indices: 24918855--24919038 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
24918845 AAATTGAATG
* * *
24918855 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
24918895 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
24918935 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
24918975 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
24919014 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
24919039 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:24919063 original size:80 final size:81
Alignment explanation
Indices: 24918895--24919083 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
24918885 GCTGGAAATT
* * * *
24918895 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
24918960 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
24918976 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
24919039 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
24919055 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
24919084 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:24923969 original size:40 final size:40
Alignment explanation
Indices: 24923884--24924034 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
24923874 AATTGAATGA
* * * **
24923884 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
24923924 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
24923965 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
24924004 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
24924035 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:24924048 original size:40 final size:40
Alignment explanation
Indices: 24923921--24924050 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
24923911 ATGCTGGAAA
* * *
24923921 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
24923961 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
24924001 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
24924041 TTATATCCGG
1 TTATATCCGG
24924051 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:24933669 original size:51 final size:49
Alignment explanation
Indices: 24933558--24933726 Score: 225
Period size: 51 Copynumber: 3.4 Consensus size: 49
24933548 ACTAGTGACT
* *
24933558 CAAGTGTGGTACTATGTGAAGGCCATTTTG-AGAAGAGATAGCTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCATTTTGAAGAA-AGATAGCTTTGTTA
24933607 CAAGTGTGGTACTATGTGAAGGCCACTTTCTGAAGAAAGATAGCTTTGTTA
1 CAAGTGTGGTACTATGTGAAGGCCA-TTT-TGAAGAAAGATAGCTTTGTTA
* *
24933658 CAAGCGTGGTACTATGTGAAGGCCATTTTGTGAAG-AAGGTAGCTTTGATTA
1 CAAGTGTGGTACTATGTGAAGGCCA-TTT-TGAAGAAAGATAGCTTTG-TTA
*
24933709 CAAGGGTGGTACTATGTG
1 CAAGTGTGGTACTATGTG
24933727 CAGGTGATAA
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
49 25 0.23
50 14 0.13
51 66 0.61
52 4 0.04
ACGTcount: A:0.28, C:0.12, G:0.30, T:0.30
Consensus pattern (49 bp):
CAAGTGTGGTACTATGTGAAGGCCATTTTGAAGAAAGATAGCTTTGTTA
Found at i:24935912 original size:53 final size:53
Alignment explanation
Indices: 24935848--24935952 Score: 201
Period size: 53 Copynumber: 2.0 Consensus size: 53
24935838 CTATGCTGTC
24935848 AAATCAGGTAGAACTTCTCAATAAAAAGATTGATGGTTTACTTGGTTCTACGT
1 AAATCAGGTAGAACTTCTCAATAAAAAGATTGATGGTTTACTTGGTTCTACGT
*
24935901 AAATCAGGTAGAACTTCTCAATAAAAATATTGATGGTTTACTTGGTTCTACG
1 AAATCAGGTAGAACTTCTCAATAAAAAGATTGATGGTTTACTTGGTTCTACG
24935953 CAGGTACATC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34
Consensus pattern (53 bp):
AAATCAGGTAGAACTTCTCAATAAAAAGATTGATGGTTTACTTGGTTCTACGT
Found at i:24937164 original size:15 final size:16
Alignment explanation
Indices: 24937144--24937173 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
24937134 GAAAATTGCC
24937144 AAAATGGG-CTAAATA
1 AAAATGGGACTAAATA
24937159 AAAATGGGACTAAAT
1 AAAATGGGACTAAAT
24937174 TGGAATATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (16 bp):
AAAATGGGACTAAATA
Found at i:24945014 original size:21 final size:21
Alignment explanation
Indices: 24944990--24945031 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
24944980 TCATCAGATC
*
24944990 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
24945011 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
24945032 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:24946398 original size:49 final size:49
Alignment explanation
Indices: 24946272--24946430 Score: 219
Period size: 49 Copynumber: 3.2 Consensus size: 49
24946262 CTAGTACGCA
* * * * * *
24946272 TAGTAGCTTGCACATAGTACTACACATGCGAACAATTATCCGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACAATTATCCGATACACG
24946321 TAGTAGCCTGCACTTAGTACTACACACGTGAACAATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACAATTATCCGATACACG
* ** *
24946370 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGAAC-AATTATCCGATACACG
24946420 TAGTAGCCTGC
1 TAGTAGCCTGC
24946431 GGAACTTATG
Statistics
Matches: 99, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
49 75 0.76
50 24 0.24
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGAACAATTATCCGATACACG
Found at i:24946723 original size:18 final size:18
Alignment explanation
Indices: 24946700--24946740 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
24946690 ATCAAAATCG
24946700 ATACTTCAGTGATAGTTC
1 ATACTTCAGTGATAGTTC
*
24946718 ATACTTCGGTGATAGTTC
1 ATACTTCAGTGATAGTTC
24946736 ATACT
1 ATACT
24946741 CATCAAGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (18 bp):
ATACTTCAGTGATAGTTC
Found at i:24948429 original size:21 final size:21
Alignment explanation
Indices: 24948403--24948446 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
24948393 ATAAGGGGAT
*
24948403 CCATAAATTGAGTTAATGCAA
1 CCATAAATCGAGTTAATGCAA
24948424 CCATAAATCGAGTTAATGCAA
1 CCATAAATCGAGTTAATGCAA
24948445 CC
1 CC
24948447 CTAGAGTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (21 bp):
CCATAAATCGAGTTAATGCAA
Found at i:24952143 original size:46 final size:46
Alignment explanation
Indices: 24952090--24952265 Score: 241
Period size: 46 Copynumber: 3.8 Consensus size: 46
24952080 TATTTGGGCA
24952090 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
24952136 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
24952183 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
24952229 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24952266 GCGGGTTACA
Statistics
Matches: 114, Mismatches: 9, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 68 0.60
47 34 0.30
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:24952245 original size:93 final size:93
Alignment explanation
Indices: 24952086--24952258 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
24952076 GGGATATTTG
* *
24952086 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
24952151 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
*
24952179 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
24952244 TTGAGTCCGAGTTCA
66 TTGAGTCCGAGTTCA
24952259 CTTATGGGCG
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:24962116 original size:52 final size:50
Alignment explanation
Indices: 24961997--24962173 Score: 223
Period size: 51 Copynumber: 3.5 Consensus size: 50
24961987 ACTAGTGACT
* *
24961997 CAAGTGTGGTACTGTGTGAAGGCCACTTTGAGAAGAGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAGATAGCTTTGGTCA
* *
24962046 CAAGTGCGGTACTTTGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG--AGATAGCTTTGGTCA
* * *
24962098 CAAGTGTGGTACTATGTGAAGGCCACTTTTTGAAGTAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AGATAGCTTTGGTC-A
* *
24962149 CAAGGGTGGTACTATGTGCAGGCCA
1 CAAGTGTGGTACTATGTGAAGGCCA
24962174 TTGGGTATCC
Statistics
Matches: 113, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
49 32 0.28
50 2 0.02
51 40 0.35
52 39 0.35
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (50 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAGATAGCTTTGGTCA
Found at i:24964900 original size:47 final size:47
Alignment explanation
Indices: 24964831--24965044 Score: 183
Period size: 47 Copynumber: 4.6 Consensus size: 47
24964821 TAAGGTGCCA
24964831 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAAGTCG
1 ATGCCATGTCCCAGACA-GGTCTTACACTAGCTCATCATCTCAAGTCG
* **
24964878 ATGCCATGTCCCAGAAAGGGTCTTACACT-GACT-ATCATCTTGTAG-CTG
1 ATGCCATGTCCCAGACA-GGTCTTACACTAG-CTCATCATC-TCAAGTC-G
* * * * ** *
24964926 ATG-CATGTCCTAGACATGTCTTACACTGGCTTA-CGCCTCGAGGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTCATCATCTC-AAGTCG
* * *
24964972 ATG-CATGTCCCAGACATGTCTTACACTAGCTC-TCGTCTCAATGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTCATCATCTCAA-GTCG
24965018 ATGCCATGTCCCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACA-GGTCTTACA
24965045 TTGGCTCTCA
Statistics
Matches: 136, Mismatches: 19, Indels: 23
0.76 0.11 0.13
Matches are distributed among these distances:
45 2 0.01
46 59 0.43
47 60 0.44
48 15 0.11
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (47 bp):
ATGCCATGTCCCAGACAGGTCTTACACTAGCTCATCATCTCAAGTCG
Found at i:24964953 original size:46 final size:46
Alignment explanation
Indices: 24964835--24964998 Score: 138
Period size: 46 Copynumber: 3.5 Consensus size: 46
24964825 GTGCCAATGC
* * * *
24964835 CATGTCCCAGACATGGTCTTACACT-AGCTCATATCTCAAG-TCGATG
1 CATGTCCCAGACAT-GTCTTACACTGA-CTTACACCTCGAGCTCGATG
* * * *
24964881 CCATGTCCCAGAAAGGGTCTTACACTGAC-TATCATCTTGTAGCT-GATG
1 -CATGTCCCAGACA-TGTCTTACACTGACTTA-CACCTCG-AGCTCGATG
* * * *
24964929 CATGTCCTAGACATGTCTTACACTGGCTTACGCCTCGAGGTCGATG
1 CATGTCCCAGACATGTCTTACACTGACTTACACCTCGAGCTCGATG
24964975 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
24964999 AGCTCTCGTC
Statistics
Matches: 95, Mismatches: 15, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
45 3 0.03
46 44 0.46
47 40 0.42
48 7 0.07
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTTACACCTCGAGCTCGATG
Found at i:24965073 original size:47 final size:46
Alignment explanation
Indices: 24964826--24965097 Score: 166
Period size: 47 Copynumber: 5.8 Consensus size: 46
24964816 GTGGGTAAGG
* ***
24964826 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAA
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTC-TCGATCAA
* * * * **
24964874 -GTCGATGCCATGTCCCAGAAAGGGTCTTACACT-GACTATC-ATCTTG
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTAG-CTCTCGATC-AA
* * * * *
24964920 TAGCTGATGCATGTCCTAGACAT-GTCTTACACTGGCT-TACGCCTCGA
1 T-GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCT-CG-ATCAA
* * *
24964967 GGTCGATGCATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAA
1 TGCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCTCG-ATCAA
* *
24965013 TGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTC-AT-AA
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTCTCGATCAA
* *
24965058 TGTGGCCGATGCATGTCTCAGACAT-GTATTACACTAGCTC
1 --T-GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTC
24965098 ACACACAAAT
Statistics
Matches: 177, Mismatches: 33, Indels: 30
0.74 0.14 0.12
Matches are distributed among these distances:
45 5 0.03
46 71 0.40
47 72 0.41
48 29 0.16
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCTCGATCAA
Found at i:24965090 original size:140 final size:140
Alignment explanation
Indices: 24964835--24965092 Score: 360
Period size: 140 Copynumber: 1.8 Consensus size: 140
24964825 GTGCCAATGC
*
24964835 CATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAGAAAGGGTC
1 CATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAGAAAGGGTC
** * *
24964900 TTACACTGACTATCATCTTGTAGCTGATGCATGTCCTAGACATGTCTTACACTGGCTTACGCCTC
66 TTACACTGACTATCATAATGTAGCCGATGCATGTCCTAGACATGTATTACACTGGCTTACGCCTC
24964965 GAGGTCGATG
131 GAGGTCGATG
* * *
24964975 CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAATGCCGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAA-GCCGATGCCATGTCCCAGAAAGGG
* * * *
24965038 TCTTACATTGGCTCTCATAATGTGGCCGATGCATGT-CTCAGACATGTATTACACT
64 TCTTACACTGACTATCATAATGTAGCCGATGCATGTCCT-AGACATGTATTACACT
24965093 AGCTCACACA
Statistics
Matches: 103, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
138 1 0.01
139 23 0.22
140 79 0.77
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (140 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAGAAAGGGTC
TTACACTGACTATCATAATGTAGCCGATGCATGTCCTAGACATGTATTACACTGGCTTACGCCTC
GAGGTCGATG
Found at i:24967108 original size:29 final size:28
Alignment explanation
Indices: 24967070--24967172 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 28
24967060 GTGACGAGAT
*
24967070 TGGCACTAAGTGTGC-ACGCTTGAAATGTA
1 TGGCACTAAGTGTGCGA-GCTT-AAATATA
24967099 TGGCACTAAGTGTGCGAGCTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
24967128 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
24967157 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
24967173 TGATCGATTA
Statistics
Matches: 67, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
28 4 0.06
29 62 0.93
30 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:24972388 original size:39 final size:39
Alignment explanation
Indices: 24972346--24972546 Score: 264
Period size: 39 Copynumber: 5.2 Consensus size: 39
24972336 TGTGTATGAA
*
24972346 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
24972385 TGTGCGAATTGTGATATCTGGGATAAGCCCGAAGGTAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
24972424 TGTGCGAGA-TATGATATCCGGGCTAAG-CCGAAGGCAAT
1 TGTGCGA-ATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
24972462 TGTGCGAGA-TATGATATCCGGGCTAAGCCCGAAGGCGAT
1 TGTGCGA-ATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
24972501 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
24972541 TGTGCG
1 TGTGCG
24972547 GGTTATCATA
Statistics
Matches: 144, Mismatches: 14, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
38 37 0.26
39 90 0.62
40 17 0.12
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:24972477 original size:77 final size:78
Alignment explanation
Indices: 24972357--24972546 Score: 258
Period size: 77 Copynumber: 2.4 Consensus size: 78
24972347 GTGCGAATTG
* * * *
24972357 TGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATATCTGGGATAAGCCCGAAGGTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTATGATATCCGGGATAAGCCCGAAGGCA
24972422 ATTGTGCGAGATA
66 ATTGTGCGAGATA
*
24972435 TGATATCCGGGCTAAG-CCGAAGGCAATTGTGCGAGA-TATGATATCCGGGCTAAGCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGA-ATTATGATATCCGGGATAAGCCCGAAGGC
* * *
24972498 GATTGTGCGAGTTG
65 AATTGTGCGAGATA
* *
24972512 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
24972547 GGTTATCATA
Statistics
Matches: 99, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
77 66 0.67
78 17 0.17
79 16 0.16
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTATGATATCCGGGATAAGCCCGAAGGCA
ATTGTGCGAGATA
Found at i:24972604 original size:79 final size:79
Alignment explanation
Indices: 24972356--24972605 Score: 217
Period size: 77 Copynumber: 3.2 Consensus size: 79
24972346 TGTGCGAATT
* * * * * * *
24972356 GTGATATCCGGGCTAAG-CCCGAAGGCAAATGTGCGA-ATTGTGATATCTGGGATAAGCCCGAAG
1 GTGATATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGA-TATCATAACCGGGCTAAGCCCGAAG
** **
24972419 GTAATTGTGCGAGATA
65 GCGATTGAACGAG-TA
* * *
24972435 -TGATATCCGGGCTAAG--CCGAAGGCAATTGTGCGAGATATGATATCCGGGCTAAGCCCGAAGG
1 GTGATATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATATCATAACCGGGCTAAGCCCGAAGG
** *
24972497 CGATTGTGCGAGTT
66 CGATTGAACGAGTA
* * * *
24972511 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTATCATAACCGGGCTATGTCCCGAAG
1 GTGATATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATATCATAACCGGGCTAAG-CCCGAAG
*
24972576 GCGTTTGAACGAGTA
65 GCGATTGAACGAGTA
24972591 GCT-ATATCC-GGTTAA
1 G-TGATATCCGGGTTAA
24972606 ACTCCGAAGG
Statistics
Matches: 147, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
76 1 0.01
77 65 0.44
78 17 0.12
79 38 0.26
80 25 0.17
81 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (79 bp):
GTGATATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATATCATAACCGGGCTAAGCCCGAAGG
CGATTGAACGAGTA
Found at i:24976870 original size:13 final size:13
Alignment explanation
Indices: 24976852--24976878 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
24976842 ACCAAAAATT
24976852 CTAATAAACTGTA
1 CTAATAAACTGTA
24976865 CTAATAAACTGTA
1 CTAATAAACTGTA
24976878 C
1 C
24976879 AATTTAGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.30
Consensus pattern (13 bp):
CTAATAAACTGTA
Found at i:24979578 original size:18 final size:18
Alignment explanation
Indices: 24979516--24979584 Score: 77
Period size: 18 Copynumber: 3.9 Consensus size: 18
24979506 GGCCCATTGT
* * *
24979516 AGTAACAGTAAATAATAC
1 AGTAACAGTAAACAGTGC
*
24979534 AGTAACAGT-AACAGTGT
1 AGTAACAGTAAACAGTGC
* *
24979551 AGTAATAGTAAACGGTGC
1 AGTAACAGTAAACAGTGC
24979569 AGTAACAGTAAACAGT
1 AGTAACAGTAAACAGT
24979585 ATGCAAGTCC
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
17 12 0.29
18 29 0.71
ACGTcount: A:0.46, C:0.12, G:0.20, T:0.22
Consensus pattern (18 bp):
AGTAACAGTAAACAGTGC
Found at i:24980054 original size:81 final size:81
Alignment explanation
Indices: 24979897--24980063 Score: 219
Period size: 81 Copynumber: 2.1 Consensus size: 81
24979887 ACATACATCA
* * *
24979897 CATAGGGGTAAAACAGTCATCTTACCATAAAAGGGAAAACAAGTCATTTTACCTCATAAGGGCAA
1 CATAAGGGCAAAACAGTAATCTTACCATAAAAGGGAAAACAAGTCATTTTACCTCATAAGGGCAA
*
24979962 AACAGTAATTTTACCT
66 AACAGTAATTTTACCC
* * * * *
24979978 CATAAGGGCAAAACAGTAATTTTACCTTATAAGGGAAAA-ATAGTCATTTTACCTTATAAGGGTA
1 CATAAGGGCAAAACAGTAATCTTACCATAAAAGGGAAAACA-AGTCATTTTACCTCATAAGGGCA
* *
24980042 AAATAGTCATTTTACCC
65 AAACAGTAATTTTACCC
24980059 CATAA
1 CATAA
24980064 ATGTAAAACA
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 1 0.01
81 73 0.99
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.28
Consensus pattern (81 bp):
CATAAGGGCAAAACAGTAATCTTACCATAAAAGGGAAAACAAGTCATTTTACCTCATAAGGGCAA
AACAGTAATTTTACCC
Found at i:24980063 original size:27 final size:27
Alignment explanation
Indices: 24979897--24980063 Score: 185
Period size: 27 Copynumber: 6.2 Consensus size: 27
24979887 ACATACATCA
* * *
24979897 CATAGGGGTAAAACAGTCATCTTACCAT
1 CATAAGGGCAAAACAGTCATTTTACC-T
*
24979925 -AAAAGGG-AAAACAAGTCATTTTACCT
1 CATAAGGGCAAAAC-AGTCATTTTACCT
*
24979951 CATAAGGGCAAAACAGTAATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
*
24979978 CATAAGGGCAAAACAGTAATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
* * *
24980005 TATAAGGGAAAAATAGTCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
* * * *
24980032 TATAAGGGTAAAATAGTCATTTTACCC
1 CATAAGGGCAAAACAGTCATTTTACCT
24980059 CATAA
1 CATAA
24980064 ATGTAAAACA
Statistics
Matches: 124, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
26 6 0.05
27 113 0.91
28 5 0.04
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.28
Consensus pattern (27 bp):
CATAAGGGCAAAACAGTCATTTTACCT
Found at i:24981723 original size:40 final size:40
Alignment explanation
Indices: 24981645--24981867 Score: 301
Period size: 40 Copynumber: 5.5 Consensus size: 40
24981635 ACCCAAGTAT
* *
24981645 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
24981684 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
24981724 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
24981764 CTTC-GGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
24981806 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
24981846 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
24981868 CATCCGAATA
Statistics
Matches: 164, Mismatches: 12, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.01
39 33 0.20
40 94 0.57
41 1 0.01
42 14 0.09
43 21 0.13
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:24981826 original size:82 final size:80
Alignment explanation
Indices: 24981645--24981867 Score: 301
Period size: 82 Copynumber: 2.8 Consensus size: 80
24981635 ACCCAAGTAT
* * *
24981645 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
**
24981708 TCACTAGCATGAATGC
65 TCACTAGCACAAATGC
*
24981724 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC-GGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
24981787 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* *
24981806 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
24981868 CATCCGAATA
Statistics
Matches: 128, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
78 1 0.01
79 33 0.26
80 27 0.21
81 1 0.01
82 50 0.39
83 16 0.12
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:24984077 original size:13 final size:13
Alignment explanation
Indices: 24984059--24984085 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
24984049 GCCACTGGCC
24984059 AACTCGTTCGGAT
1 AACTCGTTCGGAT
24984072 AACTCGTTCGGAT
1 AACTCGTTCGGAT
24984085 A
1 A
24984086 TGGCCCTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (13 bp):
AACTCGTTCGGAT
Found at i:24989908 original size:40 final size:40
Alignment explanation
Indices: 24989830--24990053 Score: 276
Period size: 40 Copynumber: 5.5 Consensus size: 40
24989820 ACCCAAGTAT
* *
24989830 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
24989869 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
24989909 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
24989949 CTTCGGCACTTAGCCC-GAGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGA-TATAGTC-ACTA---GCACAAATGC
* * * *
24989992 GTTTGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
24990032 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
24990054 CATACGAATA
Statistics
Matches: 160, Mismatches: 16, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
39 14 0.09
40 112 0.70
41 1 0.01
43 31 0.19
44 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:24990026 original size:83 final size:80
Alignment explanation
Indices: 24989830--24990053 Score: 283
Period size: 83 Copynumber: 2.8 Consensus size: 80
24989820 ACCCAAGTAT
* * * *
24989830 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
24989894 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
24989909 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGCACTTAGCCC-GAGTATAG
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGA-TATAG
24989973 -CAACTACTCGCACAAATGC
65 TC-ACTA---GCACAAATGC
* * *
24989992 GTTTGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
24990054 CATACGAATA
Statistics
Matches: 125, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
79 15 0.12
80 46 0.37
83 62 0.50
84 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:24991520 original size:40 final size:40
Alignment explanation
Indices: 24991452--24991655 Score: 241
Period size: 40 Copynumber: 5.1 Consensus size: 40
24991442 CGGAATTTAA
* ** * * * *
24991452 CCGGATATAACCACAAGCACCATTGCCTTTGGGTCTTAAC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
* *
24991492 CCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
*
24991532 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
*
24991572 CCAGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * *
24991612 TCGGATATAATC-ACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACGAA-TGCCTTCGGGTCTTAGC
24991652 CCGG
1 CCGG
24991656 GTATCATTCA
Statistics
Matches: 142, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
39 2 0.01
40 139 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:24991586 original size:80 final size:79
Alignment explanation
Indices: 24991452--24991653 Score: 269
Period size: 80 Copynumber: 2.5 Consensus size: 79
24991442 CGGAATTTAA
* * * * * * *
24991452 CCGGATATAACCACAAGCACCATTGCCTTTGGGTCTTAACCCGGGTATAGCAACTCGCACGAATG
1 CCGGATATAA-CACTAGCACAATTGCCTTCGGGTCTTAGCCCAGATATAACAACTCGCACGAATG
24991517 CCTTCGGGTCTTAGC
65 CCTTCGGGTCTTAGC
* *
24991532 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGATATAACAACTCGCACGAATG
1 CCGGATATAAC-ACTAGCACAATTGCCTTCGGGTCTTAGCCCAGATATAACAACTCGCACGAATG
24991597 CCTTCGGGTCTTAGC
65 CCTTCGGGTCTTAGC
* * *
24991612 TCGGATATAATCACTAGCATAATTGCCTTCGGGACTTAGCCC
1 CCGGATATAA-CACTAGCACAATTGCCTTCGGGTCTTAGCCC
24991654 GGGTATCATT
Statistics
Matches: 106, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
79 1 0.01
80 104 0.98
81 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (79 bp):
CCGGATATAACACTAGCACAATTGCCTTCGGGTCTTAGCCCAGATATAACAACTCGCACGAATGC
CTTCGGGTCTTAGC
Found at i:24999762 original size:40 final size:40
Alignment explanation
Indices: 24999715--24999895 Score: 258
Period size: 40 Copynumber: 4.5 Consensus size: 40
24999705 CAAGCACCAT
* * *
24999715 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
* *
24999755 TGCCTTCGGGTCTTAGGCCGGATATAACAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
24999795 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
* *
24999835 TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCA-TAA
1 TGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACGAA
*
24999874 TTGCCTTCGGGACTTAGCCCGG
1 -TGCCTTCGGGTCTTAGCCCGG
24999896 GTATCATTCA
Statistics
Matches: 129, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 2 0.02
40 126 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
Found at i:25006635 original size:18 final size:18
Alignment explanation
Indices: 25006612--25006649 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
25006602 GGCCTTGGCC
25006612 CATTGCAGTAACAGTAAA
1 CATTGCAGTAACAGTAAA
*
25006630 CATTGCAGTAATAGTAAA
1 CATTGCAGTAACAGTAAA
25006648 CA
1 CA
25006650 GTATGCAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.24
Consensus pattern (18 bp):
CATTGCAGTAACAGTAAA
Found at i:25006957 original size:27 final size:27
Alignment explanation
Indices: 25006927--25007163 Score: 228
Period size: 27 Copynumber: 8.8 Consensus size: 27
25006917 GTTACCATAA
*
25006927 AAGGGCAAAACAATCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
25006954 AAGGGCAAAACAGTCATTTTACCCTC-T
1 AAGGGCAAAACAGTCATTTTA-CCTCAT
* * * * *
25006981 CAGGGAAAAATAGTCATTTAACCCCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
* *** *
25007008 TAGAAAAAAATAGTCATTTTACC-CTAT
1 AAGGGCAAAACAGTCATTTTACCTC-AT
* *
25007035 AAGGGCAAAATAGTCATTTTACCCCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
* *
25007062 AAGGGCAAAACAGTTATTTTACC-CTAG
1 AAGGGCAAAACAGTCATTTTACCTC-AT
* *
25007089 AAGGGCAGAACAATCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
* *
25007116 AAGGGCAAAACACTCTTTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
* * *
25007143 AAGAGCAAAATAATCATTTTA
1 AAGGGCAAAACAGTCATTTTA
25007164 TCAATTAGGG
Statistics
Matches: 176, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
26 5 0.03
27 165 0.94
28 6 0.03
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (27 bp):
AAGGGCAAAACAGTCATTTTACCTCAT
Found at i:25006998 original size:54 final size:54
Alignment explanation
Indices: 25006918--25007163 Score: 260
Period size: 54 Copynumber: 4.6 Consensus size: 54
25006908 ATTATACATG
* * * * *
25006918 TTACCATAAAAGGGCAAAACAATCATTTTACCTCATAAGGGCAAAACAGTCATT
1 TTACCCTATAAGGGCAAAATAGTCATTTTACCCCATAAGGGCAAAACAGTCATT
* * * * * *** *
25006972 TTACCCTCTCAGGGAAAAATAGTCATTTAACCCCATTAGAAAAAAATAGTCATT
1 TTACCCTATAAGGGCAAAATAGTCATTTTACCCCATAAGGGCAAAACAGTCATT
*
25007026 TTACCCTATAAGGGCAAAATAGTCATTTTACCCCATAAGGGCAAAACAGTTATT
1 TTACCCTATAAGGGCAAAATAGTCATTTTACCCCATAAGGGCAAAACAGTCATT
* * * * * * *
25007080 TTACCCTAGAAGGGCAGAACAATCATTTTACCTCATAAGGGCAAAACACTCTTT
1 TTACCCTATAAGGGCAAAATAGTCATTTTACCCCATAAGGGCAAAACAGTCATT
* *
25007134 TTA-CCTCATAAGAGCAAAATAATCATTTTA
1 TTACCCT-ATAAGGGCAAAATAGTCATTTTA
25007164 TCAATTAGGG
Statistics
Matches: 155, Mismatches: 36, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
53 3 0.02
54 152 0.98
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (54 bp):
TTACCCTATAAGGGCAAAATAGTCATTTTACCCCATAAGGGCAAAACAGTCATT
Found at i:25007106 original size:81 final size:81
Alignment explanation
Indices: 25006918--25007163 Score: 253
Period size: 81 Copynumber: 3.0 Consensus size: 81
25006908 ATTATACATG
* *
25006918 TTACCATAAAAGGGCAAAACAATCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCCTC-TC
1 TTACCCTAAAAGGGCAAAACAATCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCC-CATA
* *
25006982 AGGGAAAAATAGTCATT
65 AGGGCAAAACAGTCATT
* * ** *** * * *
25006999 TAACCCCATTAGAAAAAAATAGTCATTTTACC-CTATAAGGGCAAAATAGTCATTTTACCCCATA
1 TTACCCTAAAAGGGCAAAACAATCATTTTACCTC-ATAAGGGCAAAACAGTCATTTTACCCCATA
*
25007063 AGGGCAAAACAGTTATT
65 AGGGCAAAACAGTCATT
* * * * *
25007080 TTACCCTAGAAGGGCAGAACAATCATTTTACCTCATAAGGGCAAAACACTCTTTTTACCTCATAA
1 TTACCCTAAAAGGGCAAAACAATCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCCCATAA
* * *
25007145 GAGCAAAATAATCATT
66 GGGCAAAACAGTCATT
25007161 TTA
1 TTA
25007164 TCAATTAGGG
Statistics
Matches: 129, Mismatches: 33, Indels: 6
0.77 0.20 0.04
Matches are distributed among these distances:
80 2 0.02
81 126 0.98
82 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (81 bp):
TTACCCTAAAAGGGCAAAACAATCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCCCATAA
GGGCAAAACAGTCATT
Found at i:25022304 original size:46 final size:46
Alignment explanation
Indices: 25022251--25022426 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
25022241 TATTTGGGCA
25022251 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
25022297 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
25022344 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
25022390 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
25022427 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 66 0.59
47 33 0.30
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:25022406 original size:93 final size:93
Alignment explanation
Indices: 25022247--25022419 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
25022237 GGGATATTTG
* *
25022247 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
25022312 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
25022340 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
25022405 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
25022420 CTTATGGGCG
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:25028148 original size:48 final size:48
Alignment explanation
Indices: 25028061--25028370 Score: 163
Period size: 48 Copynumber: 6.6 Consensus size: 48
25028051 GTCCGCATAT
* * * *
25028061 CGATGCTATGTCCCAGATATGGTCTTATAC-GAAGTCTCATATCGGTGC
1 CGATGCCATGTCCCAGACATGGTCTTATACGGGA-CCTCATATCGGTGC
* *
25028109 CGATGCCATATCCCAAACATGGTCTTATACGGGACCTCATAT---T--
1 CGATGCCATGTCCCAGACATGGTCTTATACGGGACCTCATATCGGTGC
* * ** * * * * * *
25028152 AG-TGCCATGTCCCAGACATGATCTTATACGAAATCACTTAACGATGT
1 CGATGCCATGTCCCAGACATGGTCTTATACGGGACCTCATATCGGTGC
* * * ** * * * * *
25028199 TGAAGCCATATCCTTGATATGGTCTTATACGGGATCACAAAGT-GGTGT
1 CGATGCCATGTCCCAGACATGGTCTTATACGGGACCTCATA-TCGGTGC
* * * * * * **
25028247 CGATGCCATGTCTCAAACATGGTCTTACACTAGCACAT-ATATCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTATAC-GGGACCTCATATCGGTGC
* * * *
25028295 CGATGCCATGTCCCAAACATGGTCTTACACTGG-CTCTCATCTCGGATGC
1 CGATGCCATGTCCCAGACATGGTCTTATACGGGAC-CTCATATCGG-TGC
25028344 CGATGCCATGTCCCAGACATGGTCTTA
1 CGATGCCATGTCCCAGACATGGTCTTA
25028371 CATGGGATCT
Statistics
Matches: 194, Mismatches: 55, Indels: 25
0.71 0.20 0.09
Matches are distributed among these distances:
42 30 0.15
43 1 0.01
45 2 0.01
46 1 0.01
47 4 0.02
48 123 0.63
49 33 0.17
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTATACGGGACCTCATATCGGTGC
Found at i:25028207 original size:90 final size:90
Alignment explanation
Indices: 25028068--25028232 Score: 204
Period size: 90 Copynumber: 1.8 Consensus size: 90
25028058 TATCGATGCT
* * * * * * *
25028068 ATGTCCCAGATATGGTCTTATACGAAGTCTCATATCGGTGCCGATGCCATATCCCAAACATGGTC
1 ATGTCCCAGACATGATCTTATACGAAATCACATAACGATGCCGAAGCCATATCCCAAACATGGTC
25028133 TTATACGGGACCTCATATTAGTGCC
66 TTATACGGGACCTCATATTAGTGCC
* ** *** *
25028158 ATGTCCCAGACATGATCTTATACGAAATCACTTAACGATGTTGAAGCCATATCCTTGATATGGTC
1 ATGTCCCAGACATGATCTTATACGAAATCACATAACGATGCCGAAGCCATATCCCAAACATGGTC
25028223 TTATACGGGA
66 TTATACGGGA
25028233 TCACAAAGTG
Statistics
Matches: 61, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
90 61 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (90 bp):
ATGTCCCAGACATGATCTTATACGAAATCACATAACGATGCCGAAGCCATATCCCAAACATGGTC
TTATACGGGACCTCATATTAGTGCC
Found at i:25028357 original size:49 final size:48
Alignment explanation
Indices: 25028247--25028372 Score: 173
Period size: 48 Copynumber: 2.6 Consensus size: 48
25028237 AAAGTGGTGT
*
25028247 CGATGCCATGTCTCAAACATGGTCTTACACTAGCACATATATCAATGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACATATATCAATGC
* * * *
25028295 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTC-TCATCTCGGATGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACAT-ATATC-AATGC
*
25028344 CGATGCCATGTCCCAGACATGGTCTTACA
1 CGATGCCATGTCCCAAACATGGTCTTACA
25028373 TGGGATCTTA
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
47 1 0.01
48 37 0.53
49 32 0.46
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCACATATATCAATGC
Found at i:25031132 original size:40 final size:40
Alignment explanation
Indices: 25031088--25031216 Score: 114
Period size: 40 Copynumber: 3.4 Consensus size: 40
25031078 TGCGCTTAAA
*
25031088 AATAGCTCCGGCTATAAATAGCACTTAGTGTGTGAATTGG
1 AATAGCTTCGGCTATAAATAGCACTTAGTGTGTGAATTGG
* *
25031128 AATAGCTTCGGCTAT--ATGAGGCACTAAGTGTGTGATACT-G
1 AATAGCTTCGGCTATAAAT-A-GCACTTAGTGTGTGA-ATTGG
**
25031168 AGATA------GCTATAAATAGCACTTAGTGTGCAAATTGG
1 A-ATAGCTTCGGCTATAAATAGCACTTAGTGTGTGAATTGG
25031203 AATAGCTTCGGCTA
1 AATAGCTTCGGCTA
25031217 ATCACTGATG
Statistics
Matches: 69, Mismatches: 7, Indels: 26
0.68 0.07 0.25
Matches are distributed among these distances:
34 5 0.07
35 19 0.28
36 1 0.01
37 2 0.03
38 2 0.03
39 1 0.01
40 34 0.49
41 5 0.07
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (40 bp):
AATAGCTTCGGCTATAAATAGCACTTAGTGTGTGAATTGG
Found at i:25033757 original size:30 final size:30
Alignment explanation
Indices: 25033691--25033759 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
25033681 ACCCCAGGGG
* *
25033691 ACACACAGTCGTGTAACGTGACCATGTGTC
1 ACACACGGCCGTGTAACGTGACCATGTGTC
* *
25033721 ACACACGGCCGTGTAATGTGACCGTGTGTC
1 ACACACGGCCGTGTAACGTGACCATGTGTC
*
25033751 GCACACGGC
1 ACACACGGC
25033760 TGAGACACAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (30 bp):
ACACACGGCCGTGTAACGTGACCATGTGTC
Found at i:25036208 original size:12 final size:12
Alignment explanation
Indices: 25036191--25036223 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
25036181 TACACAGGTA
25036191 AGGACATGGGCT
1 AGGACATGGGCT
25036203 AGGACATGGGCT
1 AGGACATGGGCT
25036215 AGGACATGG
1 AGGACATGG
25036224 ACGTGTGTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.27, C:0.15, G:0.42, T:0.15
Consensus pattern (12 bp):
AGGACATGGGCT
Found at i:25044620 original size:42 final size:43
Alignment explanation
Indices: 25044522--25044684 Score: 134
Period size: 44 Copynumber: 3.8 Consensus size: 43
25044512 AGCTCATATA
* * * * * *
25044522 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCA-AAATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATAAGT--CG
* * * *
25044566 ATGGCACTGTCCCAGACAAGGTTTTACACGAAATCA-AA-TACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATAAGT-CG
** * *
25044608 ATGCTGATGTCCCAGACATGGTCTAACACGTAAATCATAAGTTG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAATCATAAGTCG
*
25044652 ATGCCAATGTCCCAGACGTGGTCTTACACGAAA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAA
25044685 ACACATATCG
Statistics
Matches: 95, Mismatches: 21, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
42 26 0.27
43 10 0.11
44 58 0.61
45 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATAAGTCG
Found at i:25047151 original size:43 final size:42
Alignment explanation
Indices: 25047090--25047265 Score: 151
Period size: 43 Copynumber: 4.2 Consensus size: 42
25047080 ATAGGATTTC
* * * *
25047090 TGATATGTGTTCTCGTGTAAGATCACATCTGGGACGTTGGCAT
1 TGATATGTGAT-TCGTGTAAGACCACGTCTGGGACATTGGCAT
* * *
25047133 TGATATGTGATTACGTGTAAGACCATGTTTGGGACATAGGCAT
1 TGATATGTGATT-CGTGTAAGACCACGTCTGGGACATTGGCAT
* * * ** *
25047176 CG-TATTTGATTTGTGTAAGACCTTGTCTGGGACAATGGCAT
1 TGATATGTGATTCGTGTAAGACCACGTCTGGGACATTGGCAT
* * *
25047217 CGATATGTGATTGCATGTAAGACCACG-CTTGGGACGTTGGCAT
1 TGATATGTGATT-CGTGTAAGACCACGTC-TGGGACATTGGCAT
25047260 TG-TATG
1 TGATATG
25047266 GTATGCGTGA
Statistics
Matches: 107, Mismatches: 22, Indels: 9
0.78 0.16 0.07
Matches are distributed among these distances:
41 27 0.25
42 22 0.21
43 58 0.54
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (42 bp):
TGATATGTGATTCGTGTAAGACCACGTCTGGGACATTGGCAT
Found at i:25048657 original size:27 final size:27
Alignment explanation
Indices: 25048616--25048784 Score: 187
Period size: 27 Copynumber: 6.3 Consensus size: 27
25048606 TGGATAAGTT
* * *
25048616 GTAGAATTATCGAAATACCCCTGTAAG
1 GTAGAAATACCGAAATACCCCTGTAGG
* *
25048643 GTAGAACTACTGAAATACCCCTGTAGG
1 GTAGAAATACCGAAATACCCCTGTAGG
* **
25048670 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAAATACCGAAATACCCCTGTAGG
* *
25048697 GTAGAAATACCAAAATACCCTTGTAGG
1 GTAGAAATACCGAAATACCCCTGTAGG
* *
25048724 GTAGAAATACCGAAATACCCTTATAGG
1 GTAGAAATACCGAAATACCCCTGTAGG
* * * *
25048751 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAAATACCGAAATACCCCTGTAGG
25048778 GTA-AAAT
1 GTAGAAAT
25048785 TACCATTTTC
Statistics
Matches: 124, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
26 3 0.02
27 121 0.98
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAGAAATACCGAAATACCCCTGTAGG
Found at i:25048692 original size:54 final size:54
Alignment explanation
Indices: 25048616--25048786 Score: 216
Period size: 54 Copynumber: 3.2 Consensus size: 54
25048606 TGGATAAGTT
* * * *
25048616 GTAGAATTATCGAAATACCCCTGTAAGGTAGAACTACTGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGG
* *
25048670 GTAGAATTATTGAAATACCCCTGTAGGGTAGAAATACCAAAATACCCTTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGG
* * * * * * *
25048724 GTAGAAATACCGAAATACCCTTATAGGGTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTATCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGG
*
25048778 GTAAAATTA
1 GTAGAATTA
25048787 CCATTTTCCC
Statistics
Matches: 100, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 100 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (54 bp):
GTAGAATTATCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGG
Found at i:25048769 original size:81 final size:81
Alignment explanation
Indices: 25048628--25048789 Score: 209
Period size: 81 Copynumber: 2.0 Consensus size: 81
25048618 AGAATTATCG
* * * **
25048628 AAATACCCCTGTAAGGTAGAACTACTGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTG
1 AAATACCCCTGTAAGGTAGAAATACCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
25048693 TAGGGTAGAAA-TACCA
66 TAGGGTA-AAATTACCA
* * * * *
25048709 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTATAGGGTAGAATTACCGAGATACCCTTG
1 AAATACCCCTGTAAGGTAGAAATACCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
*
25048774 TGGGGTAAAATTACCA
66 TAGGGTAAAATTACCA
25048790 TTTTCCCCTA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
80 3 0.04
81 66 0.96
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (81 bp):
AAATACCCCTGTAAGGTAGAAATACCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
TAGGGTAAAATTACCA
Found at i:25049482 original size:26 final size:26
Alignment explanation
Indices: 25049439--25049489 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25049429 CTCGCTGCAA
*
25049439 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGGACTCGCCACA-ATATCTGT
*
25049466 TCTGGT-GACTCGTCACAATATCTG
1 TCTGGTGGACTCGCCACAATATCTG
25049490 GCAGCCTCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.32
26 9 0.41
27 6 0.27
ACGTcount: A:0.18, C:0.27, G:0.22, T:0.33
Consensus pattern (26 bp):
TCTGGTGGACTCGCCACAATATCTGT
Found at i:25056182 original size:27 final size:27
Alignment explanation
Indices: 25056148--25056345 Score: 247
Period size: 27 Copynumber: 7.4 Consensus size: 27
25056138 TGGATAAGTT
*
25056148 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
25056175 ATAGAATTACCGAAATACCCC-GTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
25056201 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
25056228 GTAGAATTACCGAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
25056255 GTAGAATTATCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
25056282 GTAGAAATACC-AAATACCTCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
25056308 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
25056335 GTAAAATTACC
1 GTAGAATTACC
25056346 ATTTTGCCCC
Statistics
Matches: 146, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
26 44 0.30
27 102 0.70
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:25056233 original size:53 final size:53
Alignment explanation
Indices: 25056148--25056345 Score: 245
Period size: 53 Copynumber: 3.7 Consensus size: 53
25056138 TGGATAAGTT
* * *
25056148 GTAGAATTACCGAAATACCCCTGTAAGATAGAATTACCGAAATACCCCGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTGTAGG
** *
25056201 GTAGAATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCC-TGTAGG
* * * *
25056255 GTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACC-AAATACCTCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACC-CTGTAGG
* * * *
25056308 GTAGAATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACC
25056346 ATTTTGCCCC
Statistics
Matches: 127, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 87 0.69
54 40 0.31
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (53 bp):
GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTGTAGG
Found at i:25056297 original size:80 final size:80
Alignment explanation
Indices: 25056148--25056345 Score: 254
Period size: 80 Copynumber: 2.5 Consensus size: 80
25056138 TGGATAAGTT
* * * * **
25056148 GTAGAATTACCGAAATACCCCTGTAAGATAGAATTACCGAAATACCCCGTAGGGTAGAATTATTG
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCGTAGGGTAGAAATATCC
*
25056213 AAATACCCCTGTAGG
66 AAATACCCCTGTAAG
* * *
25056228 GTAGAATTACCGAAATACCCTTATAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATA-C
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCC-CGTAGGGTAGAAATATC
*
25056292 CAAATACCTCTGTAAG
65 CAAATACCCCTGTAAG
* * *
25056308 GTAGAATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACC
25056346 ATTTTGCCCC
Statistics
Matches: 101, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 88 0.87
81 13 0.13
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (80 bp):
GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCGTAGGGTAGAAATATCC
AAATACCCCTGTAAG
Found at i:25057038 original size:27 final size:26
Alignment explanation
Indices: 25056994--25057045 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
25056984 CTCACTGCAA
*
25056994 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
25057021 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
25057046 GCAGCCTCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:25057089 original size:2 final size:2
Alignment explanation
Indices: 25057084--25057109 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
25057074 CCACACACAC
25057084 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
25057110 GTGTGTGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25058868 original size:70 final size:71
Alignment explanation
Indices: 25058717--25058879 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
25058707 GAGATGTATC
25058717 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
25058782 AGGACA
66 AGGACA
25058788 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
25058852 CGGACA
66 AGGACA
25058858 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
25058880 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:25069849 original size:40 final size:40
Alignment explanation
Indices: 25069804--25069933 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
25069794 CGGAATACAA
25069804 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
25069844 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
25069884 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
25069924 CCGGATATAA
1 CCGGATATAA
25069934 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:25073771 original size:30 final size:30
Alignment explanation
Indices: 25073735--25073794 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
25073725 TTCCCGAGCC
*
25073735 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
25073765 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
25073795 CGTATTAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:25077373 original size:19 final size:19
Alignment explanation
Indices: 25077349--25077410 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
25077339 AATCTTTAAG
25077349 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
25077368 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
25077387 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
25077408 GAT
1 GAT
25077411 CTTGTAATCT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
21 9 0.22
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:25080171 original size:39 final size:39
Alignment explanation
Indices: 25080058--25080252 Score: 221
Period size: 39 Copynumber: 4.9 Consensus size: 39
25080048 CTCGTTCAAA
* * * *
25080058 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCAC-AAT
* *
25080099 -GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAT
*
25080138 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAAT
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * * * *
25080177 TGCCTTCGGGCTTAGCCTGGATATCACAATTCGCACATT
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * *
25080216 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
25080253 TTCATACACA
Statistics
Matches: 137, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 98 0.72
40 39 0.28
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
Found at i:25080223 original size:78 final size:79
Alignment explanation
Indices: 25080058--25080241 Score: 253
Period size: 78 Copynumber: 2.3 Consensus size: 79
25080048 CTCGTTCAAA
* * *
25080058 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
25080123 CACAACTCGCACAAT
65 CACAACTCGCACAAT
* * * * *
25080138 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATTGCCTTCGGG-CTTAGCCTGGATATC
1 CGCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
* *
25080202 ACAATTCGCACATT
66 ACAACTCGCACAAT
*
25080216 TGCCTTCGGGCTTAGCCCGGATATCA
1 CGCCTTCGGGCTTAGCCCGGATATCA
25080242 CAATTCGCAC
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
78 50 0.54
79 33 0.35
80 10 0.11
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (79 bp):
CGCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
ACAACTCGCACAAT
Found at i:25080254 original size:39 final size:39
Alignment explanation
Indices: 25080090--25080252 Score: 238
Period size: 39 Copynumber: 4.2 Consensus size: 39
25080080 TATGATAACC
* * *
25080090 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
* *
25080130 CGCACAATCGCCTTCGGGCTTAGCCCGGATATCA-TATCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT-T
*
25080169 CGCACAATTGCCTTCGGGCTTAGCCTGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
*
25080208 CGCACATTTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
25080247 CGCACA
1 CGCACA
25080253 TTCATACACA
Statistics
Matches: 111, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 92 0.83
40 18 0.16
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:25088199 original size:39 final size:39
Alignment explanation
Indices: 25088086--25088280 Score: 221
Period size: 39 Copynumber: 4.9 Consensus size: 39
25088076 CTCGTTCAAA
* * * *
25088086 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCAC-AAT
* *
25088127 -GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAT
*
25088166 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAAT
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * * * *
25088205 TGCCTTCAGGCTTAGCCCGGATATCACAATTCGCACATT
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * *
25088244 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
25088281 TTCATACACA
Statistics
Matches: 137, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 98 0.72
40 39 0.28
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
Found at i:25088249 original size:78 final size:79
Alignment explanation
Indices: 25088086--25088269 Score: 253
Period size: 78 Copynumber: 2.3 Consensus size: 79
25088076 CTCGTTCAAA
* * * *
25088086 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCAGGACTTAACCCGGATAT
25088151 CACAACTCGCACAAT
65 CACAACTCGCACAAT
* * * *
25088166 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATTGCCTTCAGG-CTTAGCCCGGATATC
1 CGCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCAGGACTTAACCCGGATATC
* *
25088230 ACAATTCGCACATT
66 ACAACTCGCACAAT
*
25088244 TGCCTTCGGGCTTAGCCCGGATATCA
1 CGCCTTCGGGCTTAGCCCGGATATCA
25088270 CAATTCGCAC
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
78 51 0.55
79 32 0.34
80 10 0.11
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (79 bp):
CGCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCAGGACTTAACCCGGATATC
ACAACTCGCACAAT
Found at i:25088282 original size:39 final size:39
Alignment explanation
Indices: 25088118--25088280 Score: 238
Period size: 39 Copynumber: 4.2 Consensus size: 39
25088108 TATGATAACC
* * *
25088118 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
* *
25088158 CGCACAATCGCCTTCGGGCTTAGCCCGGATATCA-TATCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT-T
*
25088197 CGCACAATTGCCTTCAGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
*
25088236 CGCACATTTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
25088275 CGCACA
1 CGCACA
25088281 TTCATACACA
Statistics
Matches: 111, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 92 0.83
40 18 0.16
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:25093010 original size:26 final size:25
Alignment explanation
Indices: 25092974--25093083 Score: 157
Period size: 26 Copynumber: 4.2 Consensus size: 25
25092964 TGATACAAAT
25092974 TGATAATAGGTTAGGTAAATGTTCAA
1 TGATAATAGGTTAGGTAAATGTTC-A
25093000 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
25093026 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
*
25093052 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
*
25093078 TAATAA
1 TGATAA
25093084 GAATTTCATG
Statistics
Matches: 80, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
26 77 0.96
27 3 0.04
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:25094744 original size:27 final size:27
Alignment explanation
Indices: 25094703--25094842 Score: 165
Period size: 27 Copynumber: 5.2 Consensus size: 27
25094693 GAGGAAGCGT
*
25094703 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
25094730 TCTGGTGGCTCTGCCACAAAAATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
25094757 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
25094784 TCTGGTGGCCCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
25094812 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
25094838 TCTGG
1 TCTGG
25094843 CAGCCATGCT
Statistics
Matches: 98, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
26 5 0.05
27 79 0.81
28 14 0.14
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:25094788 original size:54 final size:55
Alignment explanation
Indices: 25094703--25094842 Score: 185
Period size: 54 Copynumber: 2.6 Consensus size: 55
25094693 GAGGAAGCGT
* * * *
25094703 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAAAATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCCTGCCACAAAAATCTGTA
* **
25094757 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCCTGCCACAAAAATCTGTA
* *
25094812 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
25094843 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
54 58 0.76
55 18 0.24
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.34
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCCTGCCACAAAAATCTGTA
Found at i:25101289 original size:40 final size:39
Alignment explanation
Indices: 25101198--25101308 Score: 109
Period size: 40 Copynumber: 2.8 Consensus size: 39
25101188 ATAACCATGT
** *
25101198 GCACAAATGCCTTCGGGTCTTAGCCTGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCAGATAGAATGACTA
*
25101238 GCACGAATGCCTTCGGGTCTTAGCCCAGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCAGATAGAATG--ACTA
* *
25101278 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCAGATA
25101309 TAATTTCCAG
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 55 0.92
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCAGATAGAATGACTA
Found at i:25109221 original size:40 final size:40
Alignment explanation
Indices: 25109176--25109343 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
25109166 CGGAATATAA
*
25109176 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
25109216 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
25109256 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
25109296 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
25109336 CCGGATAT
1 CCGGATAT
25109344 CATTCAATTT
Statistics
Matches: 103, Mismatches: 24, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
40 102 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:25109326 original size:80 final size:80
Alignment explanation
Indices: 25109192--25109341 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
25109182 ATAACCATGT
* *
25109192 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
25109257 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
25109272 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
25109335 CCCGGAT
64 CCCGGAT
25109342 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:25111583 original size:13 final size:14
Alignment explanation
Indices: 25111552--25111589 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
25111542 TTTATTTTTG
*
25111552 TTTTTATTTT-TAA
1 TTTTTGTTTTCTAA
25111565 TTTTTGTTTTCTAA
1 TTTTTGTTTTCTAA
25111579 -TTTTGTTTTCT
1 TTTTTGTTTTCT
25111590 TTTGTTTGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 20 0.87
14 3 0.13
ACGTcount: A:0.13, C:0.05, G:0.05, T:0.76
Consensus pattern (14 bp):
TTTTTGTTTTCTAA
Found at i:25111587 original size:19 final size:18
Alignment explanation
Indices: 25111540--25111587 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
25111530 CTTTTATTGC
25111540 ATTTTATTTTTGTTTTTA
1 ATTTTATTTTTGTTTTTA
*
25111558 TTTTTAATTTTTGTTTTCTA
1 ATTTT-ATTTTTGTTTT-TA
*
25111578 ATTTTGTTTT
1 ATTTTATTTT
25111588 CTTTTGTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 4 0.16
19 15 0.60
20 6 0.24
ACGTcount: A:0.15, C:0.02, G:0.06, T:0.77
Consensus pattern (18 bp):
ATTTTATTTTTGTTTTTA
Done.