Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 91 of 438
Found at i:25123486 original size:22 final size:24
Alignment explanation
Indices: 25123452--25123495 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
25123442 CGTCATAATA
*
25123452 TCATCTATTTCAT-ATCACAAAAT
1 TCATCTATATCATCATCACAAAAT
*
25123475 TCAT-TATATCATCATCTCAAA
1 TCATCTATATCATCATCACAAA
25123496 CCAAACCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (24 bp):
TCATCTATATCATCATCACAAAAT
Found at i:25124136 original size:47 final size:47
Alignment explanation
Indices: 25124066--25124197 Score: 174
Period size: 48 Copynumber: 2.8 Consensus size: 47
25124056 CACAACCAAT
* * *
25124066 AAGTACTTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCACA
* * * *
25124113 GAGTACCTATACTATAGCCCGTAGCCAAAATCAAGGTAACTCCTCACA
1 AAGTACCTATACCATGGCCCGTAGCC-AAATCAAGGTAACTCATCACA
* *
25124161 AAATACCTATACCATGGCGCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
25124198 TTTACTTGCA
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
47 33 0.46
48 39 0.54
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.21
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCACA
Found at i:25125359 original size:13 final size:13
Alignment explanation
Indices: 25125341--25125365 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25125331 ACAAATGATA
25125341 AAATTTTCACACC
1 AAATTTTCACACC
25125354 AAATTTTCACAC
1 AAATTTTCACAC
25125366 ATATCACACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.28, G:0.00, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACC
Found at i:25132766 original size:21 final size:21
Alignment explanation
Indices: 25132728--25132767 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
25132718 AGCAAGCCGT
*
25132728 TTTAGGATTTTAATTTAGTAG
1 TTTAGGATTTTAACTTAGTAG
*
25132749 TTTAGGATTTTAGCTTAGT
1 TTTAGGATTTTAACTTAGT
25132768 TTTATTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.03, G:0.20, T:0.53
Consensus pattern (21 bp):
TTTAGGATTTTAACTTAGTAG
Found at i:25141973 original size:48 final size:48
Alignment explanation
Indices: 25141873--25142103 Score: 161
Period size: 48 Copynumber: 4.8 Consensus size: 48
25141863 CATTTGGGGA
* * * * * * *
25141873 ATATGTGTGCCAATGTAAGATCATGTATGGGACATGGCATCGGCCA-TG
1 ATATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC-GACATTC
*
25141921 ATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACATTC
1 ATATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACATTC
* * * *
25141969 ATATGTGCA-CTAGTGTAAGACCATGTCT-GAGACATGGCAT-TAGCGTTG
1 ATATGTG-AGCCAGTGTAAGACCATGTCTAG-GACATGGCATCGA-CATTC
* * * * * * * * *
25142017 AGACGAGAGCTAGTGTAAGAACATGTCTAGG-CTTGGCCTCGGC-CTC
1 ATATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACATTC
*
25142063 GATATGTGAGCCAGTGTAAGACCATGT-TTGGAACATGGCAT
1 -ATATGTGAGCCAGTGTAAGACCATGTCTAGG-ACATGGCAT
25142104 TAACAATTCA
Statistics
Matches: 144, Mismatches: 29, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
46 4 0.03
47 34 0.24
48 105 0.73
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (48 bp):
ATATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACATTC
Found at i:25142101 original size:95 final size:96
Alignment explanation
Indices: 25141932--25142105 Score: 230
Period size: 95 Copynumber: 1.8 Consensus size: 96
25141922 TATGTGTGCC
* * *
25141932 AGTGTAAGACCATGTCTAGGACATGGCATCGACATTCATATGTGCACTAGTGTAAGACCATGTCT
1 AGTGTAAGAACATGTCTAGGACATGGCATCGACACTCATATGTGCACCAGTGTAAGACCATGTCT
25141997 GAGACATGGCATTAGCGTTGAGACGAGAGCT
66 GAGACATGGCATTAGCGTTGAGACGAGAGCT
* * *
25142028 AGTGTAAGAACATGTCTAGG-CTTGGCCTCGGC-CTCGATATGTG-AGCCAGTGTAAGACCATGT
1 AGTGTAAGAACATGTCTAGGACATGGCATCGACACTC-ATATGTGCA-CCAGTGTAAGACCATGT
*
25142090 TTG-GAACATGGCATTA
64 CTGAG-ACATGGCATTA
25142106 ACAATTCACC
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
94 4 0.06
95 45 0.66
96 19 0.28
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (96 bp):
AGTGTAAGAACATGTCTAGGACATGGCATCGACACTCATATGTGCACCAGTGTAAGACCATGTCT
GAGACATGGCATTAGCGTTGAGACGAGAGCT
Found at i:25149152 original size:48 final size:48
Alignment explanation
Indices: 25149081--25149412 Score: 362
Period size: 48 Copynumber: 6.9 Consensus size: 48
25149071 ACATTTGGAG
* *
25149081 GATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCCC
1 GATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * ** *
25149129 GATATGTGTGCTAGTGTAAGACCATTTCTGGGACATGAAATCGGCCAC
1 GATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * * *
25149177 GATATGAGAGCCAGTGTAAGACCATGTCTGGTACATGGCATCAGCATT
1 GATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * *
25149225 GATATGTGCA-CTAGTGTAATACCATGTCTGGAACATGGCATCGGCCAC
1 GATATGTG-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * *
25149273 -ATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTT
1 GA-TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * * * *
25149321 GAGATGAGAGCTAGTGTAAGAACATGTCTGGGACTTGGCATAGGCCTC
1 GATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * *
25149369 GACATGTGAGCCAGTGTAAGACCATGTTTAGAACATGGCATCGG
1 GATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
25149413 TAATTCACTC
Statistics
Matches: 233, Mismatches: 47, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
47 2 0.01
48 229 0.98
49 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
GATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
Found at i:25151416 original size:43 final size:42
Alignment explanation
Indices: 25151366--25151505 Score: 142
Period size: 43 Copynumber: 3.3 Consensus size: 42
25151356 TATCCCGGAT
*
25151366 ATGGTCTTACATGTTAACATATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACATGTTAACATAT-TCGATGCCAATGTCCCAGAC
* * * * * *
25151409 AGGGTCTTATACG--AATCATATGCAATGCCAATGTCCCAGAG
1 ATGGTCTTACATGTTAA-CATATTCGATGCCAATGTCCCAGAC
* *
25151450 ATGGTCTTACATGTTTTATCA-CTTCGATGCCAATGTCCCAGAC
1 ATGGTCTTACATG--TTAACATATTCGATGCCAATGTCCCAGAC
25151493 ATGGTCTTACATG
1 ATGGTCTTACATG
25151506 AAATCACATC
Statistics
Matches: 77, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
41 28 0.36
42 5 0.06
43 41 0.53
44 2 0.03
45 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (42 bp):
ATGGTCTTACATGTTAACATATTCGATGCCAATGTCCCAGAC
Found at i:25153003 original size:84 final size:86
Alignment explanation
Indices: 25152915--25153078 Score: 242
Period size: 86 Copynumber: 1.9 Consensus size: 86
25152905 CGTTGCTTGA
* * * *
25152915 GAAATCGGAGTCACCTATTAAATTAA-TTTTTCTCTCCTTAAATATTCATATTTTTTACGA-TAT
1 GAAATCGGAGACACCTATTAAAATAATTTTTTCTCTCCTTAAATATTCATATCTCTTACGACTAT
*
25152978 TTTAAAAAATACATGCGAGAT
66 TTAAAAAAATACATGCGAGAT
* *
25152999 GAAATCGGTGACACTTATTAAAATAATTTTTTTCTCTCCTTAAATATTCATATCTCTTACGACTA
1 GAAATCGGAGACACCTATTAAAATAA-TTTTTTCTCTCCTTAAATATTCATATCTCTTACGACTA
25153064 TTTAAAAAAATACAT
65 TTTAAAAAAATACAT
25153079 ATTGTCGCAG
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
84 22 0.31
86 32 0.46
87 16 0.23
ACGTcount: A:0.37, C:0.15, G:0.08, T:0.40
Consensus pattern (86 bp):
GAAATCGGAGACACCTATTAAAATAATTTTTTCTCTCCTTAAATATTCATATCTCTTACGACTAT
TTAAAAAAATACATGCGAGAT
Found at i:25154550 original size:13 final size:13
Alignment explanation
Indices: 25154532--25154559 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
25154522 ATTAATAATG
25154532 GAATTTGACAGTA
1 GAATTTGACAGTA
25154545 GAATTTGACAGTA
1 GAATTTGACAGTA
25154558 GA
1 GA
25154560 GTATCAGGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (13 bp):
GAATTTGACAGTA
Found at i:25159420 original size:29 final size:29
Alignment explanation
Indices: 25159366--25159710 Score: 225
Period size: 29 Copynumber: 11.8 Consensus size: 29
25159356 TCATAAACCA
* * *
25159366 ATGAAAAGGGATAGCT-TCGACTATCGATT
1 ATGAAAAGGGAT-GGTGACGACCATCGATT
* *
25159395 ATGGAAAGGGATGGTGACAACCATCGAATT
1 ATGAAAAGGGATGGTGACGACCATCG-ATT
* ** * *
25159425 ATGAAAAGGGATAGCT-TTGGCTATCGATT
1 ATGAAAAGGGAT-GGTGACGACCATCGATT
* *
25159454 ATGAAAAGGGATGGTGATGGCCATCGAATT
1 ATGAAAAGGGATGGTGACGACCATCG-ATT
* ** * *
25159484 ATGTAAAGGGATAACT-TCGACTATCGATT
1 ATGAAAAGGGAT-GGTGACGACCATCGATT
* *
25159513 ATGAAAAGAGATGGTGACGACCATCAATT
1 ATGAAAAGGGATGGTGACGACCATCGATT
* *
25159542 ATGAAAAGGGGTGGTGACGACCACCGAATT
1 ATGAAAAGGGATGGTGACGACCATCG-ATT
* * * * *
25159572 ATGAAAAGGAAAAGCT-TCGACTATCGATT
1 ATGAAAAGG-GATGGTGACGACCATCGATT
* *
25159601 ATGAAAATGGATGGTGACGACCATTGGATT
1 ATGAAAAGGGATGGTGACGACCA-TCGATT
* * * * *
25159631 ATGAAATGGGATAGCT-TCGGCTATCGATT
1 ATGAAAAGGGAT-GGTGACGACCATCGATT
* * *
25159660 A-GAAAAAGGGATAGTGACGACCATCAACT
1 ATG-AAAAGGGATGGTGACGACCATCGATT
*
25159689 ATAAAAAGGGATGGTGACGACC
1 ATGAAAAGGGATGGTGACGACC
25159711 TTGTGTCCCT
Statistics
Matches: 237, Mismatches: 64, Indels: 30
0.72 0.19 0.09
Matches are distributed among these distances:
28 10 0.04
29 143 0.60
30 77 0.32
31 7 0.03
ACGTcount: A:0.36, C:0.13, G:0.27, T:0.23
Consensus pattern (29 bp):
ATGAAAAGGGATGGTGACGACCATCGATT
Found at i:25159462 original size:59 final size:59
Alignment explanation
Indices: 25159366--25159551 Score: 284
Period size: 59 Copynumber: 3.2 Consensus size: 59
25159356 TCATAAACCA
* *
25159366 ATGAAAAGGGATAGCTTCGACTATCGATTATGGAAAGGGATGGTGACAACCATCGAATT
1 ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCGAATT
* * * *
25159425 ATGAAAAGGGATAGCTTTGGCTATCGATTATGAAAAGGGATGGTGATGGCCATCGAATT
1 ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCGAATT
* * *
25159484 ATGTAAAGGGATAACTTCGACTATCGATTATGAAAAGAGATGGTGACGACCATC-AATT
1 ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCGAATT
25159542 ATGAAAAGGG
1 ATGAAAAGGG
25159552 GTGGTGACGA
Statistics
Matches: 113, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
58 13 0.12
59 100 0.88
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.25
Consensus pattern (59 bp):
ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCGAATT
Found at i:25159633 original size:147 final size:147
Alignment explanation
Indices: 25159383--25159710 Score: 435
Period size: 147 Copynumber: 2.2 Consensus size: 147
25159373 GGGATAGCTT
* * * * * * * * *
25159383 CGACTATCGATTATGGAAAGGGATGGTGACAACCATCGAATTATGAAAAGGGATAGCTTTGGCTA
1 CGACCATCAATTATGAAAAGGGATGGTGACGACCACCGAATTATGAAAAGGAAAAGCTTCGACTA
* *
25159448 TCGATTATGAAAAGGGATGGTGATGGCCATCGAATTATGTAAA-GGGATAACTTCGACTATCGAT
66 TCGATTATGAAAAGGGATGGTGACGACCATCGAATTATG-AAATGGGATAACTTCGACTATCGAT
*
25159512 TATG-AAAAGAGATGGTGA
130 TA-GAAAAAGAGATAGTGA
*
25159530 CGACCATCAATTATGAAAAGGGGTGGTGACGACCACCGAATTATGAAAAGGAAAAGCTTCGACTA
1 CGACCATCAATTATGAAAAGGGATGGTGACGACCACCGAATTATGAAAAGGAAAAGCTTCGACTA
* * * * *
25159595 TCGATTATGAAAATGGATGGTGACGACCATTGGATTATGAAATGGGATAGCTTCGGCTATCGATT
66 TCGATTATGAAAAGGGATGGTGACGACCATCGAATTATGAAATGGGATAACTTCGACTATCGATT
*
25159660 AGAAAAAGGGATAGTGA
131 AGAAAAAGAGATAGTGA
* *
25159677 CGACCATCAACTATAAAAAGGGATGGTGACGACC
1 CGACCATCAATTATGAAAAGGGATGGTGACGACC
25159711 TTGTGTCCCT
Statistics
Matches: 157, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
146 4 0.03
147 153 0.97
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.23
Consensus pattern (147 bp):
CGACCATCAATTATGAAAAGGGATGGTGACGACCACCGAATTATGAAAAGGAAAAGCTTCGACTA
TCGATTATGAAAAGGGATGGTGACGACCATCGAATTATGAAATGGGATAACTTCGACTATCGATT
AGAAAAAGAGATAGTGA
Found at i:25159668 original size:88 final size:88
Alignment explanation
Indices: 25159451--25159642 Score: 244
Period size: 88 Copynumber: 2.2 Consensus size: 88
25159441 TTGGCTATCG
* * * * * *
25159451 ATTATGAAAAGGGATGGTGATGGCCATCGAATTATGTAAAGGGATAA-CTTCGACTATCGATTAT
1 ATTATGAAAAGGGATGCTGACGACCACCGAATTATG-AAAAGGAAAAGCTTCGACTATCGATTAT
25159515 GAAAAGAGATGGTGACGACCATCA
65 GAAAAGAGATGGTGACGACCATCA
* *
25159539 ATTATGAAAAGGGGTGGTGACGACCACCGAATTATGAAAAGGAAAAGCTTCGACTATCGATTATG
1 ATTATGAAAAGGGATGCTGACGACCACCGAATTATGAAAAGGAAAAGCTTCGACTATCGATTATG
**
25159604 AAAATG-GATGGTGACGACCATTGG
66 AAAA-GAGATGGTGACGACCA-TCA
*
25159628 ATTATGAAATGGGAT
1 ATTATGAAAAGGGAT
25159643 AGCTTCGGCT
Statistics
Matches: 91, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
87 8 0.09
88 68 0.75
89 15 0.16
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.24
Consensus pattern (88 bp):
ATTATGAAAAGGGATGCTGACGACCACCGAATTATGAAAAGGAAAAGCTTCGACTATCGATTATG
AAAAGAGATGGTGACGACCATCA
Found at i:25159683 original size:59 final size:59
Alignment explanation
Indices: 25159530--25159697 Score: 187
Period size: 59 Copynumber: 2.9 Consensus size: 59
25159520 GAGATGGTGA
* * * *
25159530 CGACCATCAATTATGAAAAGGGGTGGTGACGACCACCGAATTATGAAAAGGAAAAGCTT
1 CGACTATCGATTATGAAAAGGGATGGTGACGACCATCGAATTATGAAAAGGAAAAGCTT
* * * * * *
25159589 CGACTATCGATTATGAAAATGGATGGTGACGACCATTGGATTATGAAATGGGATAGCTT
1 CGACTATCGATTATGAAAAGGGATGGTGACGACCATCGAATTATGAAAAGGAAAAGCTT
* * * *
25159648 CGGCTATCGATTA-GAAAAAGGGATAGTGACGACCATC-AACTATAAAAAGG
1 CGACTATCGATTATG-AAAAGGGATGGTGACGACCATCGAATTATGAAAAGG
25159698 GATGGTGACG
Statistics
Matches: 90, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
58 10 0.11
59 80 0.89
ACGTcount: A:0.38, C:0.15, G:0.26, T:0.22
Consensus pattern (59 bp):
CGACTATCGATTATGAAAAGGGATGGTGACGACCATCGAATTATGAAAAGGAAAAGCTT
Found at i:25164526 original size:40 final size:40
Alignment explanation
Indices: 25164441--25164591 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
25164431 AATTGAATGA
* * * *
25164441 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
25164481 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
25164522 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
25164561 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
25164592 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:25164605 original size:40 final size:40
Alignment explanation
Indices: 25164478--25164607 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
25164468 ATGCTGGAAA
* * *
25164478 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
25164518 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
25164558 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
25164598 TTATATCCGG
1 TTATATCCGG
25164608 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:25164606 original size:80 final size:80
Alignment explanation
Indices: 25164440--25164607 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
25164430 AAATTGAATG
* *
25164440 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
25164505 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
25164520 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
25164583 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
25164600 ATATCCGG
1 ATATCCGG
25164608 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:25171742 original size:40 final size:40
Alignment explanation
Indices: 25171657--25171807 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
25171647 AATTGAATGA
* * * *
25171657 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
25171697 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
25171738 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
25171777 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
25171808 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:25171821 original size:40 final size:40
Alignment explanation
Indices: 25171694--25171823 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
25171684 ATGCTGGAAA
* * *
25171694 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
25171734 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
25171774 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
25171814 TTATATCCGG
1 TTATATCCGG
25171824 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:25171822 original size:80 final size:80
Alignment explanation
Indices: 25171656--25171823 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
25171646 AAATTGAATG
* *
25171656 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
25171721 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
25171736 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
25171799 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
25171816 ATATCCGG
1 ATATCCGG
25171824 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:25174876 original size:29 final size:29
Alignment explanation
Indices: 25174844--25175107 Score: 180
Period size: 29 Copynumber: 9.0 Consensus size: 29
25174834 TTTGACTATA
25174844 AATTATGAAAAGGGATGGTGACGACCATC
1 AATTATGAAAAGGGATGGTGACGACCATC
*
25174873 AATTATGAAAAGGGATGG-GACGACCATTG
1 AATTATGAAAAGGGATGGTGACGACCA-TC
* ** * *
25174902 AATTATGAAAAGGGATAGCT-TTGGCTATC
1 AATTATGAAAAGGGAT-GGTGACGACCATC
* *
25174931 GATTATGAAAAGGGATGGTGACGACCATAA
1 AATTATGAAAAGGGATGGTGACGACCAT-C
* * * * *
25174961 AATTATGGAAAGGGAAAGCT-TCTG-CTATC
1 AATTATGAAAAGGG-ATGGTGAC-GACCATC
* *
25174990 GATTATGAAAAGGGATGGTGATGACCATC
1 AATTATGAAAAGGGATGGTGACGACCATC
* * * * *
25175019 GAATTATGAAAAGGAATAGCT-TCGGCTATC
1 -AATTATGAAAAGGGAT-GGTGACGACCATC
* * *
25175049 GATTATAAAAAGGGATGGTGACGACCATT
1 AATTATGAAAAGGGATGGTGACGACCATC
* * *
25175078 AACTATGAAATA-GGATTGTGGCGACCATC
1 AATTATGAAA-AGGGATGGTGACGACCATC
25175107 A
1 A
25175108 TGATTCCACT
Statistics
Matches: 173, Mismatches: 49, Indels: 26
0.70 0.20 0.10
Matches are distributed among these distances:
28 16 0.09
29 111 0.64
30 40 0.23
31 6 0.03
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.24
Consensus pattern (29 bp):
AATTATGAAAAGGGATGGTGACGACCATC
Found at i:25174975 original size:59 final size:59
Alignment explanation
Indices: 25174874--25175076 Score: 302
Period size: 59 Copynumber: 3.5 Consensus size: 59
25174864 ACGACCATCA
*
25174874 ATTATGAAAAGGGATGG-GACGACCATTGAATTATGAAAAGGGATAGCTTTGGCTATCG
1 ATTATGAAAAGGGATGGTGACGACCATAGAATTATGAAAAGGGATAGCTTTGGCTATCG
* * *
25174932 ATTATGAAAAGGGATGGTGACGACCATAAAATTATGGAAAGGGAAAGCTTCT-GCTATCG
1 ATTATGAAAAGGGATGGTGACGACCATAGAATTATGAAAAGGGATAGCTT-TGGCTATCG
* * * *
25174991 ATTATGAAAAGGGATGGTGATGACCATCGAATTATGAAAAGGAATAGCTTCGGCTATCG
1 ATTATGAAAAGGGATGGTGACGACCATAGAATTATGAAAAGGGATAGCTTTGGCTATCG
*
25175050 ATTATAAAAAGGGATGGTGACGACCAT
1 ATTATGAAAAGGGATGGTGACGACCAT
25175077 TAACTATGAA
Statistics
Matches: 129, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
58 17 0.13
59 111 0.86
60 1 0.01
ACGTcount: A:0.36, C:0.11, G:0.28, T:0.25
Consensus pattern (59 bp):
ATTATGAAAAGGGATGGTGACGACCATAGAATTATGAAAAGGGATAGCTTTGGCTATCG
Found at i:25181059 original size:39 final size:39
Alignment explanation
Indices: 25181005--25181167 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
25180995 TGTGTATGAA
* *
25181005 TGTGCGAATTGTGATATCCGGGCTAAGCCTGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
25181044 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
25181083 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
25181122 TGTGCTAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
25181162 TGTGCG
1 TGTGCG
25181168 GGTTACCATA
Statistics
Matches: 111, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 95 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:25182865 original size:93 final size:93
Alignment explanation
Indices: 25182706--25182894 Score: 378
Period size: 93 Copynumber: 2.0 Consensus size: 93
25182696 AGAAGATATT
25182706 TGGGGAAGATTATGAAATAAGATGATATTAAGTTATTATCATCTTTATTTATTTCAAATTCCAAT
1 TGGGGAAGATTATGAAATAAGATGATATTAAGTTATTATCATCTTTATTTATTTCAAATTCCAAT
25182771 TTAGTCATTTTCTTTTTCTAATTTTCCA
66 TTAGTCATTTTCTTTTTCTAATTTTCCA
25182799 TGGGGAAGATTATGAAATAAGATGATATTAAGTTATTATCATCTTTATTTATTTCAAATTCCAAT
1 TGGGGAAGATTATGAAATAAGATGATATTAAGTTATTATCATCTTTATTTATTTCAAATTCCAAT
25182864 TTAGTCATTTTCTTTTTCTAATTTTCCA
66 TTAGTCATTTTCTTTTTCTAATTTTCCA
25182892 TGG
1 TGG
25182895 ATAATTCATC
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 96 1.00
ACGTcount: A:0.31, C:0.11, G:0.12, T:0.47
Consensus pattern (93 bp):
TGGGGAAGATTATGAAATAAGATGATATTAAGTTATTATCATCTTTATTTATTTCAAATTCCAAT
TTAGTCATTTTCTTTTTCTAATTTTCCA
Found at i:25184643 original size:23 final size:23
Alignment explanation
Indices: 25184616--25184662 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
25184606 ACAATATTAC
25184616 AATATTACTTGAATAGTTATAAA
1 AATATTACTTGAATAGTTATAAA
**
25184639 AATATTGTTTGAATAGTTATAAA
1 AATATTACTTGAATAGTTATAAA
25184662 A
1 A
25184663 TTAAATGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.47, C:0.02, G:0.11, T:0.40
Consensus pattern (23 bp):
AATATTACTTGAATAGTTATAAA
Found at i:25194791 original size:34 final size:34
Alignment explanation
Indices: 25194748--25194815 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
25194738 GCATTTTTGA
* *
25194748 CACTGTACTGAGATGGGCGAAGGCCCAA-ACTGT
1 CACTGTACTGAAAAGGGCGAAGGCCCAAGACTGT
**
25194781 CACTGATACTGAAAAGGGCTTAGGCCCAAGACTGT
1 CACTG-TACTGAAAAGGGCGAAGGCCCAAGACTGT
25194816 TCAACTATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 5 0.17
34 19 0.66
35 5 0.17
ACGTcount: A:0.29, C:0.24, G:0.28, T:0.19
Consensus pattern (34 bp):
CACTGTACTGAAAAGGGCGAAGGCCCAAGACTGT
Found at i:25197654 original size:109 final size:109
Alignment explanation
Indices: 25197461--25197787 Score: 618
Period size: 109 Copynumber: 3.0 Consensus size: 109
25197451 AAATTGAATA
25197461 AGTTGTAAAATACATGTTCTAGAAGCTTTGAACATGAAATTGTCATGGATTTTTAATTAGAGGGT
1 AGTTGTAAAATACATGTTCTAGAAGCTTTGAACATGAAATTGTCATGGATTTTTAATTAGAGGGT
*
25197526 CTTAAATAGAAATTGGACCAATTTCTAAATTTATGGACAAAAAT
66 CTTAAATAGAAATTTGACCAATTTCTAAATTTATGGACAAAAAT
25197570 AGTTGTAAAATACATGTTCTAGAAGCTTTGAACATGAAATTGTCATGGATTTTTAATTAGAGGGT
1 AGTTGTAAAATACATGTTCTAGAAGCTTTGAACATGAAATTGTCATGGATTTTTAATTAGAGGGT
25197635 CTTAAATAGAAATTTGACCAATTTCTAAATTTATGGACAAAAAT
66 CTTAAATAGAAATTTGACCAATTTCTAAATTTATGGACAAAAAT
*
25197679 AGTTGTAAAATACATGTTCTAGAAGCTTTGAGCATGAAATTGTCATGGATTTTTAATTAGAGGGT
1 AGTTGTAAAATACATGTTCTAGAAGCTTTGAACATGAAATTGTCATGGATTTTTAATTAGAGGGT
* *
25197744 CTTAAATAGCAATTTGACCAATTTCTAAATTTACGGACAAAAAT
66 CTTAAATAGAAATTTGACCAATTTCTAAATTTATGGACAAAAAT
25197788 GGGCATGGAT
Statistics
Matches: 214, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
109 214 1.00
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (109 bp):
AGTTGTAAAATACATGTTCTAGAAGCTTTGAACATGAAATTGTCATGGATTTTTAATTAGAGGGT
CTTAAATAGAAATTTGACCAATTTCTAAATTTATGGACAAAAAT
Found at i:25204223 original size:19 final size:18
Alignment explanation
Indices: 25204196--25204234 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
25204186 AGCCCCACCA
25204196 TTAACTCTTTCATTACAAT
1 TTAACTC-TTCATTACAAT
*
25204215 TTAATTCTTCATTACAAT
1 TTAACTCTTCATTACAAT
25204233 TT
1 TT
25204235 TACATCACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.31, C:0.18, G:0.00, T:0.51
Consensus pattern (18 bp):
TTAACTCTTCATTACAAT
Found at i:25204762 original size:12 final size:13
Alignment explanation
Indices: 25204738--25204902 Score: 116
Period size: 12 Copynumber: 12.8 Consensus size: 13
25204728 GTAATATACC
*
25204738 ACATAACAAACAT
1 ACATAACATACAT
25204751 ACA-AACATACAT
1 ACATAACATACAT
25204763 ACA-AA-AT--AT
1 ACATAACATACAT
*
25204772 ACATAACAATATAT
1 ACATAAC-ATACAT
25204786 AACATAACATACAT
1 -ACATAACATACAT
* *
25204800 ACA-AATATACAA
1 ACATAACATACAT
25204812 ACATAACAATA-A-
1 ACATAAC-ATACAT
25204824 ACATAACATACAT
1 ACATAACATACAT
*
25204837 ATATAACAGTACAT
1 ACATAACA-TACAT
25204851 AACATAACATAACAT
1 -ACATAACAT-ACAT
* *
25204866 AACAT-ACAAATAT
1 -ACATAACATACAT
25204879 ACAT-ACATAACACT
1 ACATAACAT-ACA-T
25204893 ACATAACATA
1 ACATAACATA
25204903 ACTATAACAA
Statistics
Matches: 125, Mismatches: 11, Indels: 31
0.75 0.07 0.19
Matches are distributed among these distances:
9 5 0.04
10 2 0.02
11 5 0.04
12 40 0.32
13 21 0.17
14 25 0.20
15 27 0.22
ACGTcount: A:0.59, C:0.19, G:0.01, T:0.21
Consensus pattern (13 bp):
ACATAACATACAT
Found at i:25204772 original size:37 final size:36
Alignment explanation
Indices: 25204730--25204904 Score: 134
Period size: 37 Copynumber: 4.8 Consensus size: 36
25204720 ACATAATAGT
25204730 AATATACCACATAACAA-ACATACA-AACATACATACA
1 AATATA-CACATAACAATA-ATACATAACATACATACA
*
25204766 AA-ATATACATAACAATATATAACATAACATACATACA
1 AATATACACATAACAATA-AT-ACATAACATACATACA
*
25204803 AATATACAAACATAACAATAA-ACATAACATACATATA
1 AATATAC--ACATAACAATAATACATAACATACATACA
*
25204840 TAACAGT--ACATAAC-AT-A-ACATAACATAACATACA
1 -AATA-TACACATAACAATAATACATAACAT-ACATACA
*
25204874 AATATACATACATAACACTACATAACATAAC
1 AATATAC--ACATAACAATA-AT-ACATAAC
25204905 TATAACAACC
Statistics
Matches: 113, Mismatches: 8, Indels: 31
0.74 0.05 0.20
Matches are distributed among these distances:
32 1 0.01
33 13 0.12
34 17 0.15
35 13 0.12
36 12 0.11
37 30 0.27
38 6 0.05
39 3 0.03
40 11 0.10
41 7 0.06
ACGTcount: A:0.58, C:0.20, G:0.01, T:0.21
Consensus pattern (36 bp):
AATATACACATAACAATAATACATAACATACATACA
Found at i:25204794 original size:5 final size:5
Alignment explanation
Indices: 25204738--25204911 Score: 108
Period size: 5 Copynumber: 35.6 Consensus size: 5
25204728 GTAATATACC
25204738 ACATA ACA-A ACAT- ACA-A ACAT- ACAT- ACA-A A-ATA TACATA ACA-A
1 ACATA ACATA ACATA ACATA ACATA ACATA ACATA ACATA -ACATA ACATA
* *
25204781 TATATA ACATA ACAT- ACATA CAAATA TACA-A ACATA ACAATAA ACATA
1 -ACATA ACATA ACATA ACATA -ACATA -ACATA ACATA AC-AT-A ACATA
* *
25204829 ACAT- ACAT- ATATA ACAGT- ACATA ACATA ACATA ACATA ACATA CAAATA
1 ACATA ACATA ACATA ACA-TA ACATA ACATA ACATA ACATA ACATA -ACATA
25204878 TACAT- ACATA ACACT- ACATA ACATA ACTATA ACA
1 -ACATA ACATA ACA-TA ACATA ACATA AC-ATA ACA
25204912 ACCCATTTTT
Statistics
Matches: 137, Mismatches: 10, Indels: 44
0.72 0.05 0.23
Matches are distributed among these distances:
3 1 0.01
4 40 0.29
5 65 0.47
6 28 0.20
7 3 0.02
ACGTcount: A:0.59, C:0.20, G:0.01, T:0.21
Consensus pattern (5 bp):
ACATA
Found at i:25204812 original size:65 final size:68
Alignment explanation
Indices: 25204743--25204902 Score: 170
Period size: 70 Copynumber: 2.3 Consensus size: 68
25204733 ATACCACATA
*
25204743 ACAAACATAC-AAACAT-ACATACAAA-ATATACA-TAACA-ATATATAACATAACAT-ACATAC
1 ACAAACATACAAAACATAACATACAAATATA-ACAGT-ACATA-ACATAACATAACATAACATAC
25204802 AAATAT
63 AAATAT
*
25204808 ACAAACATAACAATAAACATAACATACATATATAACAGTACATAACATAACATAACATAACATAC
1 ACAAACAT-AC-A-AAACATAACATACAAATATAACAGTACATAACATAACATAACATAACATAC
25204873 AAATAT
63 AAATAT
* **
25204879 ACATACATAACACTACATAACATA
1 ACAAACAT-ACAAAACATAACATA
25204903 ACTATAACAA
Statistics
Matches: 81, Mismatches: 5, Indels: 14
0.81 0.05 0.14
Matches are distributed among these distances:
65 8 0.10
66 2 0.02
69 16 0.20
70 28 0.35
71 27 0.33
ACGTcount: A:0.59, C:0.19, G:0.01, T:0.21
Consensus pattern (68 bp):
ACAAACATACAAAACATAACATACAAATATAACAGTACATAACATAACATAACATAACATACAAA
TAT
Found at i:25204896 original size:46 final size:48
Alignment explanation
Indices: 25204729--25204911 Score: 148
Period size: 46 Copynumber: 3.8 Consensus size: 48
25204719 CACATAATAG
* * *
25204729 TAATATAC-CACATAACAAACAT-ACA-AACAT-ACATACAAAATATACA
1 TAATATACATACATAACATACATAACATAACATAACATA-ACAATA-ACA
* * *
25204775 TAACAATATATAACATAACATACATACAAATATACA-AACATAACAATAAACA
1 TAA-TATACAT-ACATAACATACATA-ACATA-ACATAACATAACAAT-AACA
* *
25204827 TAACATACATATATAACAGTACATAACATAACATAACATAAC-AT-ACA
1 TAATATACATACATAACA-TACATAACATAACATAACATAACAATAACA
25204874 -AATATACATACATAACACTACATAACATAACTATAACA
1 TAATATACATACATAACA-TACATAACATAAC-ATAACA
25204912 ACCCATTTTT
Statistics
Matches: 112, Mismatches: 13, Indels: 23
0.76 0.09 0.16
Matches are distributed among these distances:
46 31 0.28
47 12 0.11
49 17 0.15
50 19 0.17
51 13 0.12
52 11 0.10
53 9 0.08
ACGTcount: A:0.58, C:0.20, G:0.01, T:0.22
Consensus pattern (48 bp):
TAATATACATACATAACATACATAACATAACATAACATAACAATAACA
Found at i:25206471 original size:13 final size:13
Alignment explanation
Indices: 25206453--25206513 Score: 77
Period size: 13 Copynumber: 4.7 Consensus size: 13
25206443 ACCAAATTTT
25206453 TCAAAAGCACTTC
1 TCAAAAGCACTTC
*
25206466 TCAAAAGCACTTT
1 TCAAAAGCACTTC
* * *
25206479 TCCACAGTACTTC
1 TCAAAAGCACTTC
*
25206492 TCAAAAGCACTTT
1 TCAAAAGCACTTC
25206505 TCAAAAGCA
1 TCAAAAGCA
25206514 TTGCTAAACT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 39 1.00
ACGTcount: A:0.38, C:0.28, G:0.08, T:0.26
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:25210065 original size:43 final size:42
Alignment explanation
Indices: 25210015--25210165 Score: 194
Period size: 43 Copynumber: 3.5 Consensus size: 42
25210005 TATCCCTGAT
* * * * *
25210015 ATGGTCTTATATGTTATCACATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACATGTAATCACATAT-AATGCCAATGTACCAGAC
* * *
25210058 AAGGTCTTACACGTAATCACAATATAATGCCAATGTACCAGGC
1 ATGGTCTTACATGTAATCAC-ATATAATGCCAATGTACCAGAC
*
25210101 ATGGTCTTACATGTAATCACAATAAAATGCCAATGTACCAGAC
1 ATGGTCTTACATGTAATCAC-ATATAATGCCAATGTACCAGAC
25210144 ATGGTCTTACATGTAATCACAT
1 ATGGTCTTACATGTAATCACAT
25210166 TTCTGTAACC
Statistics
Matches: 95, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
42 2 0.02
43 89 0.94
44 4 0.04
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (42 bp):
ATGGTCTTACATGTAATCACATATAATGCCAATGTACCAGAC
Found at i:25211617 original size:18 final size:18
Alignment explanation
Indices: 25211596--25211665 Score: 61
Period size: 19 Copynumber: 3.6 Consensus size: 18
25211586 AACAGTAATA
*
25211596 ACATCCATACATAACAAT
1 ACATACATACATAACAAT
*
25211614 ACATAACATA-ATAGTAAACAT
1 ACAT-ACATACATA--ACA-AT
25211635 AACATACATACATAACAAT
1 -ACATACATACATAACAAT
25211654 ACATAACATACA
1 ACAT-ACATACA
25211666 AAATAGACAA
Statistics
Matches: 42, Mismatches: 3, Indels: 13
0.72 0.05 0.22
Matches are distributed among these distances:
18 11 0.26
19 13 0.31
20 4 0.10
21 7 0.17
22 7 0.17
ACGTcount: A:0.56, C:0.21, G:0.01, T:0.21
Consensus pattern (18 bp):
ACATACATACATAACAAT
Found at i:25211624 original size:5 final size:5
Alignment explanation
Indices: 25211559--25211663 Score: 50
Period size: 5 Copynumber: 21.6 Consensus size: 5
25211549 GGGTATTACA
* *
25211559 ATAAC AT-AC ATACAA ATATAC A-AAC ATAAC AGT-A- ATAAC AT-CC
1 ATAAC ATAAC ATA-AC ATA-AC ATAAC ATAAC A-TAAC ATAAC ATAAC
*
25211602 AT-AC ATAAC A-ATAC ATAAC ATAAT AGTAAAC ATAAC AT-AC AT-AC
1 ATAAC ATAAC ATA-AC ATAAC ATAAC A-T-AAC ATAAC ATAAC ATAAC
25211646 ATAAC A-ATAC ATAAC ATA
1 ATAAC ATA-AC ATAAC ATA
25211664 CAAAATAGAC
Statistics
Matches: 79, Mismatches: 7, Indels: 28
0.69 0.06 0.25
Matches are distributed among these distances:
3 1 0.01
4 25 0.32
5 39 0.49
6 11 0.14
7 3 0.04
ACGTcount: A:0.57, C:0.19, G:0.02, T:0.22
Consensus pattern (5 bp):
ATAAC
Found at i:25211646 original size:40 final size:37
Alignment explanation
Indices: 25211558--25211663 Score: 137
Period size: 40 Copynumber: 2.9 Consensus size: 37
25211548 GGGGTATTAC
*
25211558 AATAACATACATACA-AA-TATACA-AACATAACAGT
1 AATAACATACATACATAACAATACATAACATAACAGT
* *
25211592 AATAACATCCATACATAACAATACATAACATAATAGT
1 AATAACATACATACATAACAATACATAACATAACAGT
25211629 AAACATAACATACATACATAACAATACATAACATA
1 --A-ATAACATACATACATAACAATACATAACATA
25211664 CAAAATAGAC
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
34 14 0.23
35 2 0.03
36 5 0.08
37 10 0.16
39 1 0.02
40 30 0.48
ACGTcount: A:0.58, C:0.19, G:0.02, T:0.22
Consensus pattern (37 bp):
AATAACATACATACATAACAATACATAACATAACAGT
Found at i:25211675 original size:23 final size:23
Alignment explanation
Indices: 25211631--25211675 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
25211621 ATAATAGTAA
*
25211631 ACATAACATACATACATAACAAT
1 ACATAACATACATAAATAACAAT
25211654 ACATAACATACA-AAATAGACAA
1 ACATAACATACATAAATA-ACAA
25211676 AACAATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.60, C:0.20, G:0.02, T:0.18
Consensus pattern (23 bp):
ACATAACATACATAAATAACAAT
Found at i:25211864 original size:29 final size:29
Alignment explanation
Indices: 25211803--25211868 Score: 80
Period size: 30 Copynumber: 2.3 Consensus size: 29
25211793 AATAAAAATA
* *
25211803 AAAAATAAAAGTCAAATATAATATGAATT
1 AAAAATAAAAGTCAAATATAATACGAATC
* *
25211832 AAAAATCAGAAGTCAAATATAATACGTA-C
1 AAAAAT-AAAAGTCAAATATAATACGAATC
25211861 AAAAATAA
1 AAAAATAA
25211869 TTAGTTTGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
28 1 0.03
29 12 0.39
30 18 0.58
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.23
Consensus pattern (29 bp):
AAAAATAAAAGTCAAATATAATACGAATC
Found at i:25216188 original size:37 final size:37
Alignment explanation
Indices: 25216146--25216232 Score: 104
Period size: 37 Copynumber: 2.4 Consensus size: 37
25216136 TACTATTTTA
* *
25216146 TTAATTTAATATTAAAGTGAT-TATCTTAATATTAAAT
1 TTAATTTAATATTAAACTGATAGAT-TTAATATTAAAT
* * *
25216183 TTAATTTAATATTTACCTTATAGATTTAATATTAAAT
1 TTAATTTAATATTAAACTGATAGATTTAATATTAAAT
*
25216220 TTAATCTAATATT
1 TTAATTTAATATT
25216233 TATCTAGATA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
37 41 0.95
38 2 0.05
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (37 bp):
TTAATTTAATATTAAACTGATAGATTTAATATTAAAT
Found at i:25216196 original size:12 final size:12
Alignment explanation
Indices: 25216146--25216234 Score: 56
Period size: 12 Copynumber: 7.2 Consensus size: 12
25216136 TACTATTTTA
25216146 TTAATTTAATAT
1 TTAATTTAATAT
* * * *
25216158 TAAAGTGATTAT
1 TTAATTTAATAT
25216170 CTTAATATTAA-AT
1 -TTAAT-TTAATAT
25216183 TTAATTTAATAT
1 TTAATTTAATAT
** *
25216195 TTACCTTATAGAT
1 TTAATTTA-ATAT
25216208 TTAATATTAA-AT
1 TTAAT-TTAATAT
*
25216220 TTAATCTAATAT
1 TTAATTTAATAT
25216232 TTA
1 TTA
25216235 TCTAGATAAG
Statistics
Matches: 57, Mismatches: 14, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
11 7 0.12
12 33 0.58
13 12 0.21
14 5 0.09
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.51
Consensus pattern (12 bp):
TTAATTTAATAT
Found at i:25226328 original size:305 final size:306
Alignment explanation
Indices: 25225802--25226365 Score: 830
Period size: 305 Copynumber: 1.8 Consensus size: 306
25225792 TTCAAGACTG
* *
25225802 CAAAATTCGAGATAGAAATAATTATTTTATGATTATTTTGAGGTCTATGATATGATTGCATGATT
1 CAAAATCCGAGATAGAAATAATTATTTTATGATTATTTTAAGGTCTATGATATGATTGCATGATT
*
25225867 GTGTGAAAATTTCGTGAAGAAATTCTATGCATAAAGTGCTCAATTTGAAGTTAGGGACTAAATTG
66 GTGTGAAAATTTCGTGAAGAAATTCTATGCATAAAGTGCTCAATTTGAAATTAGGGACTAAATTG
* * * * * * * *
25225932 AATAAGTTGCAAATCTTGCATTCTAGAAGTTTCTAGTATGAAATTGCTTTGAAATCTTAATTAGG
131 AATAAATTCCAAAACTTGCATTCTAGAAGTTTCTAGCATAAAATTGATTAGAAATATTAATTAGG
* * *
25225997 AGGTCTTAAATAGAAATTTGACCAATTTCTAAG-CGATTGACAAAAATTGGACATGGATGGAATG
196 AGGCCTTAAAGAGAAATTTGACCAATTTCTAAGTCGATGGACAAAAATTGGACATGGATGGAATG
25226061 TAATATCCTGATTTTGGGCCTAGTCGGAATAGTGGTTTTGTGACCA
261 TAATATCCTGATTTTGGGCCTAGTCGGAATAGTGGTTTTGTGACCA
*
25226107 CAAAATCCGAGATATAAATAATTATTTTATGATTATTTTAAGGTCTATGATATGATTGCATGATT
1 CAAAATCCGAGATAGAAATAATTATTTTATGATTATTTTAAGGTCTATGATATGATTGCATGATT
* * *
25226172 GTGTGAAAATTTCGTGAAGAAATTTTATGCATAAAGTGCTTAATTTGAAATTTGGGACTAAATTG
66 GTGTGAAAATTTCGTGAAGAAATTCTATGCATAAAGTGCTCAATTTGAAATTAGGGACTAAATTG
** * *
25226237 AATAAATTCCAAAACTTGTGTTCTAGAAGTATT-TTGCATAAAATTGAATTAG-ATTATTAATTA
131 AATAAATTCCAAAACTTGCATTCTAGAAGT-TTCTAGCATAAAATTG-ATTAGAAATATTAATTA
** * * *
25226300 -GAGGCCCTTAAAGATTAATTTTACCAATTTTTAAGTCTATGGACAAAAATTGGACATGGATGGA
194 GGAGG-CCTTAAAGAGAAATTTGACCAATTTCTAAGTCGATGGACAAAAATTGGACATGGATGGA
25226364 AT
258 AT
25226366 TTTTGGACAG
Statistics
Matches: 228, Mismatches: 27, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
304 4 0.02
305 191 0.84
306 33 0.14
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.36
Consensus pattern (306 bp):
CAAAATCCGAGATAGAAATAATTATTTTATGATTATTTTAAGGTCTATGATATGATTGCATGATT
GTGTGAAAATTTCGTGAAGAAATTCTATGCATAAAGTGCTCAATTTGAAATTAGGGACTAAATTG
AATAAATTCCAAAACTTGCATTCTAGAAGTTTCTAGCATAAAATTGATTAGAAATATTAATTAGG
AGGCCTTAAAGAGAAATTTGACCAATTTCTAAGTCGATGGACAAAAATTGGACATGGATGGAATG
TAATATCCTGATTTTGGGCCTAGTCGGAATAGTGGTTTTGTGACCA
Found at i:25227400 original size:46 final size:48
Alignment explanation
Indices: 25227343--25227476 Score: 170
Period size: 46 Copynumber: 2.9 Consensus size: 48
25227333 GGGATATTTG
25227343 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-CGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGACGA
* * * *
25227390 -GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG--ACGA
*
25227436 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
25227477 GCGGGTTACA
Statistics
Matches: 72, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
43 4 0.06
45 2 0.03
46 33 0.46
47 30 0.42
48 2 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (48 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGACGA
Found at i:25229330 original size:30 final size:30
Alignment explanation
Indices: 25229296--25229354 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
25229286 CCCGAGCCTA
25229296 GGGGCAAAAGTGTAAATATGCAAAAGTTTC
1 GGGGCAAAAGTGTAAATATGCAAAAGTTTC
* * *
25229326 GGGGCAAAATTGTAATTTTGCAAAAGTTT
1 GGGGCAAAAGTGTAAATATGCAAAAGTTT
25229355 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.29
Consensus pattern (30 bp):
GGGGCAAAAGTGTAAATATGCAAAAGTTTC
Found at i:25234832 original size:40 final size:40
Alignment explanation
Indices: 25234768--25234948 Score: 169
Period size: 40 Copynumber: 4.6 Consensus size: 40
25234758 ACTTCAACTT
** *
25234768 CAAATGCCTTTAGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
25234808 CAAATGCCTTCGGGACTTAACCCGGATT-TAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
25234848 C-AATGCCTTCGAG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * *
25234886 CAAATGCCTTC-GGATCTTAGTCCGGATT-CAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAAC-TCGCA
25234927 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
25234949 AGAAATCATT
Statistics
Matches: 115, Mismatches: 16, Indels: 20
0.76 0.11 0.13
Matches are distributed among these distances:
38 22 0.19
39 20 0.17
40 60 0.52
41 13 0.11
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:25234892 original size:39 final size:40
Alignment explanation
Indices: 25234796--25234948 Score: 172
Period size: 40 Copynumber: 3.9 Consensus size: 40
25234786 AGCCCGGTTA
* * *
25234796 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGAAT
*
25234836 TAATAACTCGCAC-AATGCCTTCGAG-CTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGAAT
*
25234874 TAGTAACTCGCACAAATGCCTTCG-GATCTTAGTCCGG-AT
1 TAGTAACTCGCACAAATGCCTTCGAGA-CTTAGCCCGGAAT
* * *
25234913 TCAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 T-AGTAAC-TCGCACAAATGCCTTCGAGACTTAGCCC
25234949 AGAAATCATT
Statistics
Matches: 98, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
38 24 0.24
39 24 0.24
40 40 0.41
41 10 0.10
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGAAT
Found at i:25236397 original size:40 final size:40
Alignment explanation
Indices: 25236341--25236440 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 40
25236331 GGATATAGCG
* * * *
25236341 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATT-TAAGA
* * **
25236381 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAAGA
25236421 ACTCGCACAAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
25236441 ATCTTAGTCC
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 48 0.96
41 2 0.04
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAAGA
Found at i:25236453 original size:40 final size:39
Alignment explanation
Indices: 25236382--25236491 Score: 114
Period size: 40 Copynumber: 2.7 Consensus size: 39
25236372 GTTATAATAG
*
25236382 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGAA
1 CTCGCACAAATGCCTTC-GGACTTAACCCGGATATGGGAA
** **
25236422 CTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCA
1 CTCGCACAAATGCCTTCGGA-CTTAACCCGGATATGGGAA
* *
25236462 CTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 C-TCGCACAAATGCCTTC-GGACTTAACCCG
25236492 ACATCATTCG
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 3 0.05
40 46 0.77
41 11 0.18
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
CTCGCACAAATGCCTTCGGACTTAACCCGGATATGGGAA
Found at i:25246010 original size:78 final size:79
Alignment explanation
Indices: 25245912--25246092 Score: 244
Period size: 78 Copynumber: 2.3 Consensus size: 79
25245902 TACTCGTTCA
* *
25245912 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCG-GATCTTAACCC-G
*
25245975 ATTTAGTAAC-TCGCAC
63 ATTTAGTAACTTAGCAC
**
25245991 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGATT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGATT
*
25246055 TAGTCACTTAGCAC
66 TAGTAACTTAGCAC
*
25246069 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
25246093 CATCATTCGA
Statistics
Matches: 91, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
77 12 0.13
78 55 0.60
79 24 0.26
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGATT
TAGTAACTTAGCAC
Found at i:25246034 original size:39 final size:39
Alignment explanation
Indices: 25245910--25246092 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
25245900 GCTACTCGTT
*
25245910 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATT-TAGTAACTCGCA
* *
25245950 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCG-GGCTTAGCCCGGATTTAGTAACTCGCA
*
25245990 C-AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
* * * *
25246028 CAAATGCCTTCGGATCTTAGTCC-GATTTAGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGATTTAGTAAC-TCGCA
25246068 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
25246093 CATCATTCGA
Statistics
Matches: 123, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
38 25 0.20
39 45 0.37
40 50 0.41
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
Found at i:25255748 original size:29 final size:29
Alignment explanation
Indices: 25255657--25255788 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
25255647 TACTCGATTT
** * *
25255657 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
25255686 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
25255715 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
25255744 TGCACACTTAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
25255773 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
25255789 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 2 0.02
29 83 0.98
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:25263626 original size:29 final size:29
Alignment explanation
Indices: 25263593--25263724 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
25263583 GTGACGAGAT
*
25263593 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
25263622 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
25263651 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
25263680 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
25263709 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
25263725 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:25271570 original size:20 final size:22
Alignment explanation
Indices: 25271545--25271584 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
25271535 TTTCAACTTA
25271545 TTTTGAACT-AA-TTAAAAGGT
1 TTTTGAACTCAATTTAAAAGGT
25271565 TTTTGAACTCAATTTAAAAG
1 TTTTGAACTCAATTTAAAAG
25271585 ATCATTAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 2 0.11
22 7 0.39
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (22 bp):
TTTTGAACTCAATTTAAAAGGT
Found at i:25273029 original size:12 final size:13
Alignment explanation
Indices: 25272998--25273039 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
25272988 TGATACTCTA
*
25272998 TTTTCAAGATATG
1 TTTTAAAGATATG
* *
25273011 TTTTTAAGTTATG
1 TTTTAAAGATATG
25273024 TTTTAAAGATATG
1 TTTTAAAGATATG
25273037 TTT
1 TTT
25273040 CATGCGTGCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.29, C:0.02, G:0.14, T:0.55
Consensus pattern (13 bp):
TTTTAAAGATATG
Found at i:25275676 original size:17 final size:19
Alignment explanation
Indices: 25275654--25275694 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
25275644 TTAAAGTGGA
25275654 GCCCACA-GGCCCA-TTGG
1 GCCCACACGGCCCAGTTGG
*
25275671 GCCCACACGGCCCAGTTTG
1 GCCCACACGGCCCAGTTGG
25275690 GCCCA
1 GCCCA
25275695 AAATGGCCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.33
18 6 0.29
19 8 0.38
ACGTcount: A:0.17, C:0.44, G:0.27, T:0.12
Consensus pattern (19 bp):
GCCCACACGGCCCAGTTGG
Found at i:25289863 original size:27 final size:28
Alignment explanation
Indices: 25289833--25289927 Score: 111
Period size: 28 Copynumber: 3.3 Consensus size: 28
25289823 GAGTCTGCAT
*
25289833 ACTTAGTGCTATAAAATC-TACTCGCAC
1 ACTTAGTGCTATAAAATCAAACTCGCAC
*
25289860 ACTTAGTGCTATATAATCAAACTCGCAC
1 ACTTAGTGCTATAAAATCAAACTCGCAC
* * *
25289888 ACTTAGTGCTGTACAAATTTTAAACCCGCAC
1 ACTTAGTGCTATA-AAA--TCAAACTCGCAC
25289919 ACTTAGTGC
1 ACTTAGTGC
25289928 CAATCTCATG
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
27 17 0.29
28 20 0.34
29 2 0.03
31 19 0.33
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (28 bp):
ACTTAGTGCTATAAAATCAAACTCGCAC
Found at i:25297914 original size:27 final size:28
Alignment explanation
Indices: 25297884--25297983 Score: 112
Period size: 27 Copynumber: 3.5 Consensus size: 28
25297874 ATAGAGAGTC
* *
25297884 CGCATACTTAGTGCTATAAAATC-TACT
1 CGCACACTTAGTGCTATAAAATCAAACT
*
25297911 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
25297939 CGCACACTTAGTGCTGTACAAATTTTAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
25297970 CGCACACTTAGTGC
1 CGCACACTTAGTGC
25297984 CAATCTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:25303225 original size:39 final size:39
Alignment explanation
Indices: 25303167--25303282 Score: 146
Period size: 39 Copynumber: 3.0 Consensus size: 39
25303157 GTACCATTCC
* *
25303167 AGCACGTAGCCTGCAGACTTCAAGTCCGGATATATTTCT
1 AGCACATAGCCTGCTGACTTCAAGTCCGGATATATTTCT
*
25303206 AGCACATAGCCTGCTGACTTCAAGTCCGGATATATTCCT
1 AGCACATAGCCTGCTGACTTCAAGTCCGGATATATTTCT
* * *
25303245 AGCATATAGCCTG-TGGACCTCATA-TTCGGATATATTTC
1 AGCACATAGCCTGCT-GACTTCA-AGTCCGGATATATTTC
25303283 AAATACCATG
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
38 1 0.01
39 66 0.97
40 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (39 bp):
AGCACATAGCCTGCTGACTTCAAGTCCGGATATATTTCT
Found at i:25308952 original size:34 final size:34
Alignment explanation
Indices: 25308875--25308969 Score: 100
Period size: 34 Copynumber: 2.8 Consensus size: 34
25308865 TTTTAGTTTT
* * ** *
25308875 AGTTAGGGCCTTAACCCCATTTCAGTAACAGTAGT
1 AGTTTGGGCCTTAA-CCCATTTCAGTGACAAAAGC
* *
25308910 AGTCTGGGCCTTAACCCATTTCAGTGATAAAAGC
1 AGTTTGGGCCTTAACCCATTTCAGTGACAAAAGC
* *
25308944 AGTTTGGGCCTTAGCCCATATCAGTG
1 AGTTTGGGCCTTAACCCATTTCAGTG
25308970 CAGTATGCAG
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
34 38 0.76
35 12 0.24
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.28
Consensus pattern (34 bp):
AGTTTGGGCCTTAACCCATTTCAGTGACAAAAGC
Found at i:25318949 original size:30 final size:30
Alignment explanation
Indices: 25318913--25318972 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
25318903 TTCCCAAGGC
*
25318913 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
25318943 TAGGGGCAAAAATGTAATTTTGCTAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
25318973 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:25322316 original size:20 final size:20
Alignment explanation
Indices: 25322291--25322336 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
25322281 TTCGGAATCA
25322291 TTTACTTAGTAAATATGCAT
1 TTTACTTAGTAAATATGCAT
25322311 TTTACTTAGTAAATATGCAT
1 TTTACTTAGTAAATATGCAT
25322331 TTTACT
1 TTTACT
25322337 GATCCTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.33, C:0.11, G:0.09, T:0.48
Consensus pattern (20 bp):
TTTACTTAGTAAATATGCAT
Found at i:25331261 original size:29 final size:28
Alignment explanation
Indices: 25331227--25331358 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 28
25331217 GTGACAAGAT
*
25331227 TGGCACTAAGTGTGC-AAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAA-CTT-AAATATA
* *
25331256 TGGCACTAAGTGTGCGAATTTAAATTACA
1 TGGCACTAAGTGTGCGAACTTAAA-TATA
*
25331285 TGGCACTACGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAA-TATA
* * *
25331314 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAACTTAAAT-ATA
25331343 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
25331359 TGATCGATTA
Statistics
Matches: 90, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
28 4 0.04
29 84 0.93
30 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAACTTAAATATA
Found at i:25331298 original size:58 final size:58
Alignment explanation
Indices: 25331227--25331358 Score: 178
Period size: 58 Copynumber: 2.3 Consensus size: 58
25331217 GTGACAAGAT
* * *
25331227 TGGCACTAAGTGTGC-AAGCTTGAAA-TGTATGGCACTAAGTGTGCGAATTTAAATTACA
1 TGGCACTAAGTGTGCGAA-CTT-AAATTATATGGCACTAAGTGTGCGAACTTAAATCACA
* * *
25331285 TGGCACTACGTGTGCGAACTTAAATTATATGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAACTTAAATTATATGGCACTAAGTGTGCGAACTTAAATCACA
25331343 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
25331359 TGATCGATTA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
57 3 0.05
58 60 0.92
59 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAACTTAAATTATATGGCACTAAGTGTGCGAACTTAAATCACA
Found at i:25339208 original size:29 final size:29
Alignment explanation
Indices: 25339180--25339282 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
25339170 CCTCCGAGCT
** * * *
25339180 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
25339209 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
25339238 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
25339267 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
25339283 ATCTCGACAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:25347295 original size:29 final size:29
Alignment explanation
Indices: 25347267--25347369 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
25347257 CCTCCGAGCT
** * * *
25347267 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
25347296 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
25347325 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
25347354 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
25347370 ATCTCGACAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:25350639 original size:29 final size:28
Alignment explanation
Indices: 25350605--25350708 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 28
25350595 GACTCGATCA
*
25350605 CGCACACTTAGTGCCATGTGATTTAAGTT
1 CGCACACTTAGTGCCAT-TAATTTAAGTT
* * * *
25350634 CGCACACATAGTGCCATATAAAGTTGAGCT
1 CGCACACTTAGTGCCAT-T-AATTTAAGTT
25350664 CGCACACTTAGTGCCA-TACATTTCAAGCTT
1 CGCACACTTAGTGCCATTA-ATTT-AAG-TT
25350694 -GCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
25350709 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
27 1 0.02
28 4 0.07
29 34 0.56
30 22 0.36
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATTAATTTAAGTT
Found at i:25358704 original size:29 final size:28
Alignment explanation
Indices: 25358670--25358773 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 28
25358660 TACTCGATCA
*
25358670 CGCACACTTAGTGCCATGTGATTTAAGTT
1 CGCACACTTAGTGCCAT-TAATTTAAGTT
* * * *
25358699 CGCACACATAGTGCCATATAAAGTTGAGCT
1 CGCACACTTAGTGCCAT-T-AATTTAAGTT
25358729 CGCACACTTAGTGCCA-TACATTTCAAGCTT
1 CGCACACTTAGTGCCATTA-ATTT-AAG-TT
25358759 -GCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
25358774 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
27 1 0.02
28 4 0.07
29 34 0.56
30 22 0.36
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATTAATTTAAGTT
Found at i:25365351 original size:49 final size:50
Alignment explanation
Indices: 25365289--25365414 Score: 152
Period size: 50 Copynumber: 2.5 Consensus size: 50
25365279 AGTCGATGTT
* *
25365289 ATGTCCTAGACATGGTGTTACACTGACTATCGA-A-AT-TGAGGCCAATGCC
1 ATGTCCCAGACATGGTCTTACACTGACTATC-ATATATCTG-GGCCAATGCC
* * *
25365338 ATGTCCCAAACATGGTCTTACACT-AGCTATCATATATCTGTGCCTATGCC
1 ATGTCCCAGACATGGTCTTACACTGA-CTATCATATATCTGGGCCAATGCC
25365388 ATGTCCCAGACATGGTCTTACACTGAC
1 ATGTCCCAGACATGGTCTTACACTGAC
25365415 ACATCTCTTA
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
48 2 0.03
49 27 0.41
50 34 0.52
51 3 0.05
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (50 bp):
ATGTCCCAGACATGGTCTTACACTGACTATCATATATCTGGGCCAATGCC
Found at i:25365482 original size:46 final size:48
Alignment explanation
Indices: 25365240--25365556 Score: 191
Period size: 46 Copynumber: 6.7 Consensus size: 48
25365230 AATGCCAACA
* * * * *
25365240 CCATGTCCCAAACATGGTCTTACACTGGCT-CATC-CATCAAGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTACATCAC-TGAGGCCGATG
** * * * * *
25365287 TTATGTCCTAGACATGGTGTTACACT-GACTATCGA-AATTGAGGCCAATG
1 CCATGTCCCAGACATGGTCTTACACTAG-CTA-C-ATCACTGAGGCCGATG
* * * *
25365336 CCATGTCCCAAACATGGTCTTACACTAGCTATCATATATCTG-TGCCTATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTA-CAT-CA-CTGAGGCCGATG
* *
25365386 CCATGTCCCAGACATGGTCTTACACT-GAC-ACATCTCTTA-GCCGAT-
1 CCATGTCCCAGACATGGTCTTACACTAG-CTACATCACTGAGGCCGATG
*
25365431 ACATGTCCCAGACAT-GTCTTACACTAGCTTACATCAC-GAGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGC-TACATCACTGAGGCCGATG
* *
25365478 -CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCACT-A--CCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCT-AC--ATCACTGAGGCCGATG
* * *
25365524 CCATGTCCCTGACGTGGTCTTAAACTAGC-ACAT
1 CCATGTCCCAGACATGGTCTTACACTAGCTACAT
25365557 AAATAACCCG
Statistics
Matches: 213, Mismatches: 35, Indels: 47
0.72 0.12 0.16
Matches are distributed among these distances:
44 12 0.06
45 17 0.08
46 55 0.26
47 35 0.16
48 21 0.10
49 36 0.17
50 35 0.16
51 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTACATCACTGAGGCCGATG
Found at i:25367248 original size:55 final size:53
Alignment explanation
Indices: 25367129--25367324 Score: 207
Period size: 55 Copynumber: 3.6 Consensus size: 53
25367119 AGGATACCAA
* * * ** *
25367129 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGAAATTCAT
1 GTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAA-AGGTCCAT
* * *
25367183 GTAAGTCCATGTCAAGACATGGCATTGATAAGTTGCTATAAGGCAAAGGTCCCAT
1 GTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGGCAAAGGT-CCAT
*
25367238 GTAAGACCATGCCAAGACATGGCATTGGTGAGTTC-ATAAGGC-AAGGATACCAT
1 GTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAAGG-T-CCAT
* * * *
25367291 GTAAAACCATGTCGAGACATGGCAATGGTAAGTT
1 GTAAGACCATGCCAAGACATGGCATTGGTAAGTT
25367325 TCAAAAGGAT
Statistics
Matches: 120, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 4 0.03
53 41 0.34
54 33 0.28
55 42 0.35
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
GTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAAGGTCCAT
Found at i:25367300 original size:53 final size:53
Alignment explanation
Indices: 25367118--25367324 Score: 220
Period size: 53 Copynumber: 3.8 Consensus size: 53
25367108 ATTAGGGTTT
* * * *
25367118 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG-TTCATAAGGC
* * * * *
25367172 AA-GAAATTCATGTAAGTCCATGTCAAGACATGGCATTGATAAGTTGCTATAAGGC
1 AAGGATA-CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* *
25367227 AAAGG-TCCCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * * *
25367280 AAGGATACCATGTAAAACCATGTCGAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
25367325 TCAAAAGGAT
Statistics
Matches: 125, Mismatches: 22, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
52 4 0.03
53 46 0.37
54 33 0.26
55 39 0.31
56 2 0.02
57 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:25367323 original size:108 final size:109
Alignment explanation
Indices: 25367129--25367324 Score: 270
Period size: 108 Copynumber: 1.8 Consensus size: 109
25367119 AGGATACCAA
* * * **
25367129 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGAAATTCATGTAAGTCCATG
1 GTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCACAAGGCAAGAAATCCATGTAAAACCATG
*
25367194 TCAAGACATGGCATTGATAAGTTGCTATAAGGCAAAGGTCCCAT
66 TCAAGACATGGCAATGATAAGTTGCTATAAGGCAAAGGTCCCAT
* * *
25367238 GTAAGACCATGCCAAGACATGGCATTGGTGAG-TTCATAAGGCAAG-GATACCATGTAAAACCAT
1 GTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCACAAGGCAAGAAAT-CCATGTAAAACCAT
* *
25367301 GTCGAGACATGGCAATGGTAAGTT
65 GTCAAGACATGGCAATGATAAGTT
25367325 TCAAAAGGAT
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
107 2 0.03
108 43 0.57
109 30 0.40
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (109 bp):
GTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCACAAGGCAAGAAATCCATGTAAAACCATG
TCAAGACATGGCAATGATAAGTTGCTATAAGGCAAAGGTCCCAT
Found at i:25380418 original size:24 final size:24
Alignment explanation
Indices: 25380391--25380440 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
25380381 TATGTAGACC
*
25380391 AAATTTATATATTATTTAAAAACT
1 AAATTTATATATCATTTAAAAACT
25380415 AAATTTATATATCATTTAAAAACT
1 AAATTTATATATCATTTAAAAACT
25380439 AA
1 AA
25380441 GAGAAATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (24 bp):
AAATTTATATATCATTTAAAAACT
Found at i:25381528 original size:15 final size:16
Alignment explanation
Indices: 25381502--25381535 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
25381492 TATAACCCTA
*
25381502 ATTTTATTAAAAATTC
1 ATTTTATTAAAAAATC
25381518 ATTTT-TTAAAAAATC
1 ATTTTATTAAAAAATC
25381533 ATT
1 ATT
25381536 ATAGTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTTTATTAAAAAATC
Found at i:25386680 original size:5 final size:5
Alignment explanation
Indices: 25386670--25386701 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
25386660 CAATTTGTGA
25386670 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
25386702 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:25386695 original size:9 final size:9
Alignment explanation
Indices: 25386671--25386701 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
25386661 AATTTGTGAA
25386671 AAATAAAAT
1 AAATAAAAT
25386680 AAAATAAAAT
1 -AAATAAAAT
25386690 AAATAAAAT
1 AAATAAAAT
25386699 AAA
1 AAA
25386702 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:25388903 original size:16 final size:17
Alignment explanation
Indices: 25388872--25388904 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
25388862 ATTTTATATG
25388872 AGCTTACTAATATTTAT
1 AGCTTACTAATATTTAT
*
25388889 AGCTTAC-ATTATTTAT
1 AGCTTACTAATATTTAT
25388905 TTTTCCTGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (17 bp):
AGCTTACTAATATTTAT
Found at i:25405794 original size:39 final size:40
Alignment explanation
Indices: 25405734--25405887 Score: 199
Period size: 39 Copynumber: 3.9 Consensus size: 40
25405724 AACATTGGAA
25405734 ATATATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
25405773 ATATAT-CGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * *
25405812 ATATATCCGGGCTAAGACCCGAAGGCCTT-GTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * *
25405850 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
25405888 CGCTATATCC
Statistics
Matches: 101, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
38 12 0.12
39 62 0.61
40 27 0.27
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:25405876 original size:79 final size:78
Alignment explanation
Indices: 25405734--25405887 Score: 195
Period size: 79 Copynumber: 2.0 Consensus size: 78
25405724 AACATTGGAA
* * * *
25405734 ATATATCCGGGCTAAGACCGAAGGCATTCGTGCGAGTTGATATATCGGGCTAAGACCCGAAGGCA
1 ATATATCCGGGCTAAGACCGAAGGCATTCGTGCAAGTTCACAAATCGGGCTAAGACCCGAAGGCA
*
25405799 TTCGTGCGAGTTG
66 ATCGTGCGAGTTG
* * *
25405812 ATATATCCGGGCTAAGACCCGAAGGCCTT-GTGCAAG-TCACCAAATCCGGGTTATGACCCGAAG
1 ATATATCCGGGCTAAGA-CCGAAGGCATTCGTGCAAGTTCA-CAAAT-CGGGCTAAGACCCGAAG
25405875 GCAATCGTGCGAG
63 GCAATCGTGCGAG
25405888 CGCTATATCC
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
77 2 0.03
78 26 0.40
79 37 0.57
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (78 bp):
ATATATCCGGGCTAAGACCGAAGGCATTCGTGCAAGTTCACAAATCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTG
Found at i:25408312 original size:2 final size:2
Alignment explanation
Indices: 25408305--25408329 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
25408295 TCGATCGGAG
25408305 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
25408330 GAGTACACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:25408454 original size:29 final size:29
Alignment explanation
Indices: 25408430--25408551 Score: 228
Period size: 29 Copynumber: 4.2 Consensus size: 29
25408420 TCGCACACCC
*
25408430 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
25408459 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
25408488 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
25408517 AGTGCCATATATTTCCA-CATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
25408545 AGTGCCA
1 AGTGCCA
25408552 ATCTCGTCAC
Statistics
Matches: 92, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
28 18 0.20
29 74 0.80
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:25408455 original size:58 final size:58
Alignment explanation
Indices: 25408393--25408551 Score: 187
Period size: 58 Copynumber: 2.8 Consensus size: 58
25408383 ATTTAAGCCC
* * * *
25408393 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAT
* * **
25408451 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
* * **
25408509 GCACACTTAGTGCCATATATTTCCA-CATGCACACTTAGTGCCA
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCA
25408552 ATCTCGTCAC
Statistics
Matches: 92, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
57 18 0.20
58 73 0.79
59 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.27
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:25408484 original size:87 final size:86
Alignment explanation
Indices: 25408393--25408551 Score: 221
Period size: 87 Copynumber: 1.8 Consensus size: 86
25408383 ATTTAAGCCC
* * *
25408393 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCATGCACAC
1 GCACACATAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCA-CATGCACAC
25408457 TTAGTGCCATATATTTCCAGCAT
64 TTAGTGCCATATATTTCCAGCAT
* * * **
25408480 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCACATGCACACTT
1 GCACACATAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCACATGCACACTT
25408545 AGTGCCA
66 AGTGCCA
25408552 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
86 18 0.29
87 44 0.70
88 1 0.02
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.27
Consensus pattern (86 bp):
GCACACATAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCACATGCACACTT
AGTGCCATATATTTCCAGCAT
Found at i:25416287 original size:29 final size:29
Alignment explanation
Indices: 25416255--25416356 Score: 195
Period size: 29 Copynumber: 3.5 Consensus size: 29
25416245 ATTTAAGCCC
*
25416255 GCACACATAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
25416284 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
25416313 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
25416342 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
25416357 ATCTCGTCAC
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:25416296 original size:58 final size:58
Alignment explanation
Indices: 25416226--25416356 Score: 192
Period size: 58 Copynumber: 2.3 Consensus size: 58
25416216 ACTCGATTTC
* *
25416226 GCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCAT-AGATTTCAAGCACGCACACATAGTGCCATATATTTCCAGCAT
* * * *
25416284 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATAGATTTCAAGCACGCACACATAGTGCCATATATTTCCAGCAT
25416342 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
25416357 ATCTCGTCAC
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 4 0.06
58 62 0.94
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (58 bp):
GCACACTTAGTGCCATAGATTTCAAGCACGCACACATAGTGCCATATATTTCCAGCAT
Found at i:25418253 original size:27 final size:28
Alignment explanation
Indices: 25418188--25418256 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
25418178 AATGAGATTG
*
25418188 GCACTAAGTGTGCGAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTGAATTGTATA
*
25418216 GCACTAAGTGTGCGAGTTGACTAT-TA-A
1 GCACTAAGTGTGCGAGTTGAAT-TGTATA
25418243 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
25418257 GACTTGCTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 15 0.39
28 22 0.58
29 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTGAATTGTATA
Found at i:25418266 original size:27 final size:27
Alignment explanation
Indices: 25418188--25418266 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 27
25418178 AATGAGATTG
* * *
25418188 GCACTAAGTGTGCGAGTTTAAT-TGTATA
1 GCACTAAGTGTGCGACTTGACTAT-TA-A
*
25418216 GCACTAAGTGTGCGAGTTGACTATTAA
1 GCACTAAGTGTGCGACTTGACTATTAA
25418243 GCACTAAGTGTGCGGACTTG-CTAT
1 GCACTAAGTGTGC-GACTTGACTAT
25418267 ATATTTTCGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
27 18 0.39
28 27 0.59
29 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.32
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTGACTATTAA
Found at i:25421417 original size:26 final size:26
Alignment explanation
Indices: 25421387--25421438 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
25421377 AAATGTTAAG
25421387 TTTGAGTGGTCGAATAAATGCCAAAA
1 TTTGAGTGGTCGAATAAATGCCAAAA
25421413 TTTGAGTGGTCGAATAAATGCCAAAA
1 TTTGAGTGGTCGAATAAATGCCAAAA
25421439 GAGTTTTGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (26 bp):
TTTGAGTGGTCGAATAAATGCCAAAA
Found at i:25429637 original size:40 final size:40
Alignment explanation
Indices: 25429600--25429745 Score: 145
Period size: 40 Copynumber: 3.6 Consensus size: 40
25429590 GCTACTCGTT
* *
25429600 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAATAACTCGCA
*
25429640 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
* ** * * *
25429680 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAATAAC-TCGCA
* *
25429721 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
25429746 CATCATTCGA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 3 0.03
40 77 0.83
41 13 0.14
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
Found at i:25434765 original size:24 final size:24
Alignment explanation
Indices: 25434711--25434768 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
25434701 CTGTCTATGT
* *
25434711 ACCCACTCAACTTGCTGCCAAGGT
1 ACCCACTCAACCTGCTGCCAAGGA
* * *
25434735 GCTCACTCAACCTGGTGCCAAGGA
1 ACCCACTCAACCTGCTGCCAAGGA
25434759 ACCCACTCAA
1 ACCCACTCAA
25434769 ACTGTTGTTA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.28, C:0.38, G:0.17, T:0.17
Consensus pattern (24 bp):
ACCCACTCAACCTGCTGCCAAGGA
Found at i:25439969 original size:40 final size:39
Alignment explanation
Indices: 25439858--25440008 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
25439848 TTAATCACGT
* * *
25439858 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
25439898 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
25439938 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
25439978 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
25440009 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:25439992 original size:80 final size:79
Alignment explanation
Indices: 25439858--25440008 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
25439848 TTAATCACGT
*
25439858 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
25439923 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
25439938 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
25440001 CCGGATAT
64 CCGGATAT
25440009 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:25447895 original size:40 final size:40
Alignment explanation
Indices: 25447850--25448015 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
25447840 CGGAATATAA
*
25447850 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
25447890 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
25447930 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
25447970 CCGGATATAATTTCCAGCA-TATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
25448008 CCGGATAT
1 CCGGATAT
25448016 CATTCAATTT
Statistics
Matches: 103, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
38 13 0.13
39 12 0.12
40 78 0.76
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:25450081 original size:39 final size:39
Alignment explanation
Indices: 25450037--25450232 Score: 286
Period size: 39 Copynumber: 5.0 Consensus size: 39
25450027 GATGTGTATG
* *
25450037 AATGTGCGAATTGTGATATCCGGACTAAGCCCGAAGGCA
1 AATGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
* *
25450076 AATGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
*
25450115 ATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC-
1 AATGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
* *
25450153 AATGGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCA
1 AAT-GTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
* *
25450193 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 AATGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCA
25450233 TTTGTGCGGG
Statistics
Matches: 142, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
38 2 0.01
39 128 0.90
40 12 0.08
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (39 bp):
AATGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
Found at i:25450130 original size:78 final size:79
Alignment explanation
Indices: 25450039--25450232 Score: 320
Period size: 78 Copynumber: 2.5 Consensus size: 79
25450029 TGTGTATGAA
* * *
25450039 TGTGCGAATTGTGATATCCGGACTAAGCCCGAAGGCAAAT-GTGCGAATTATGATATCCGGGCTA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAATGGTGCGAACTATGATATCCGGGCTA
25450103 AGCCCGAAGGCAAT
66 AGCCCGAAGGCAAT
*
25450117 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC-AATGGTGCGAGCTATGATATCCGGGCTA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAATGGTGCGAACTATGATATCCGGGCTA
25450181 AGCCCGAAGGCAAT
66 AGCCCGAAGGCAAT
*
25450195 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCA
25450233 TTTGTGCGGG
Statistics
Matches: 108, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
77 3 0.03
78 96 0.89
79 9 0.08
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (79 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAATGGTGCGAACTATGATATCCGGGCTA
AGCCCGAAGGCAAT
Found at i:25461855 original size:19 final size:20
Alignment explanation
Indices: 25461831--25461868 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
25461821 GGTACCACCA
25461831 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
25461850 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
25461869 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:25462208 original size:93 final size:93
Alignment explanation
Indices: 25462098--25462268 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
25462088 GCCCCTAAGT
* * *
25462098 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
*
25462163 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* * * *
25462191 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
25462256 CGAGTTCAGATGC
66 CGAGTTCAGATGC
25462269 TCAACCACCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:25462263 original size:46 final size:46
Alignment explanation
Indices: 25462093--25462265 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
25462083 AACCCGCCCC
* * * * *
25462093 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
* * * * *
25462139 TAAATGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GAC-ATTTGCATCCA
* *
25462187 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
25462232 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGA
25462266 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 3 0.03
46 57 0.55
47 25 0.24
48 2 0.02
49 3 0.03
50 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
Found at i:25462709 original size:31 final size:30
Alignment explanation
Indices: 25462674--25462734 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
25462664 ATTTAATATG
25462674 AACTTTAAAAAAATTTACACTTTTGCCCCTA
1 AACTTTAAAAAAA-TTACACTTTTGCCCCTA
*** *
25462705 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
25462735 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 17 0.65
31 9 0.35
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.38
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:25469409 original size:19 final size:20
Alignment explanation
Indices: 25469385--25469422 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
25469375 GGTACCACCA
25469385 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
25469404 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
25469423 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:25469762 original size:93 final size:93
Alignment explanation
Indices: 25469652--25469822 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
25469642 GCCCCTAAGT
* *
25469652 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
25469717 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
25469745 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
25469810 CGAGTTCGGATGC
66 CGAGTTCGGATGC
25469823 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:25469819 original size:46 final size:46
Alignment explanation
Indices: 25469647--25469819 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
25469637 AACCCGCCCC
* * * *
25469647 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
25469693 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
25469741 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
25469786 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
25469820 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:25470277 original size:31 final size:30
Alignment explanation
Indices: 25470242--25470302 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
25470232 ATTTAATACG
25470242 AACTTTAAAAAAAATTACACTTTTGCCCCTA
1 AACTTT-AAAAAAATTACACTTTTGCCCCTA
*** *
25470273 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
25470303 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 20 0.77
31 6 0.23
ACGTcount: A:0.34, C:0.25, G:0.05, T:0.36
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:25477407 original size:22 final size:21
Alignment explanation
Indices: 25477355--25477408 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 21
25477345 ATTGCCATGG
*
25477355 ATGTATTATGCTAATATAATTA
1 ATGT-TTATGCCAATATAATTA
*
25477377 ATTGATTATGCCAATATAATTGA
1 A-TGTTTATGCCAATATAATT-A
25477400 ATGTTTATG
1 ATGTTTATG
25477409 TGTTAAAAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 23 0.85
23 4 0.15
ACGTcount: A:0.37, C:0.06, G:0.13, T:0.44
Consensus pattern (21 bp):
ATGTTTATGCCAATATAATTA
Found at i:25481006 original size:25 final size:25
Alignment explanation
Indices: 25480972--25481021 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
25480962 TGCTATTCCA
25480972 AGACACTCACCAAAATATAAGCTTT
1 AGACACTCACCAAAATATAAGCTTT
25480997 AGACACTCACCAAAATATAAGCTTT
1 AGACACTCACCAAAATATAAGCTTT
25481022 TGCTAAAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.24
Consensus pattern (25 bp):
AGACACTCACCAAAATATAAGCTTT
Found at i:25482613 original size:28 final size:28
Alignment explanation
Indices: 25482567--25482635 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
25482557 TTTAAAACCC
*
25482567 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
25482594 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
25482622 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
25482636 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:25484462 original size:19 final size:18
Alignment explanation
Indices: 25484425--25484468 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
25484415 ATACATACAG
25484425 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
25484442 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
25484461 TACTAATT
1 TAATAATT
25484469 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:25486876 original size:28 final size:28
Alignment explanation
Indices: 25486830--25486898 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
25486820 TTTAAAACCC
*
25486830 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
25486857 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
25486885 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
25486899 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:25488724 original size:19 final size:18
Alignment explanation
Indices: 25488687--25488730 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
25488677 ATACATACAG
25488687 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
25488704 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
25488723 TACTAATT
1 TAATAATT
25488731 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:25490959 original size:68 final size:68
Alignment explanation
Indices: 25490848--25490976 Score: 186
Period size: 68 Copynumber: 1.9 Consensus size: 68
25490838 TCATCATCTC
* * * * *
25490848 GGCGGACTTCATTTGTTGTCATAGCCCAGCTATGGTCTTACACAATACAGTGCCATGTTTACTGT
1 GGCGGACTACATATGTTGCCATAGCCCAACTATGGTCTCACACAATACAGTGCCATGTTTACTGT
25490913 CTT
66 CTT
* * *
25490916 GGCGGACTACATATGTTGCCATAGCCCAACTATGGTCTCACACAATATATTGTCATGTTTA
1 GGCGGACTACATATGTTGCCATAGCCCAACTATGGTCTCACACAATACAGTGCCATGTTTA
25490977 ACCATGGACT
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
68 53 1.00
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.33
Consensus pattern (68 bp):
GGCGGACTACATATGTTGCCATAGCCCAACTATGGTCTCACACAATACAGTGCCATGTTTACTGT
CTT
Found at i:25494854 original size:43 final size:42
Alignment explanation
Indices: 25494777--25494857 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
25494767 TTTGAGTTAC
*
25494777 GTGTAAGACCATATATGGGATATGGCATCGATATGAGACTTT
1 GTGTAAGACCATAGATGGGATATGGCATCGATATGAGACTTT
*
25494819 GTGTAAGACCATAGCT-GGACTATTGGCATCGATATGAGA
1 GTGTAAGACCATAGATGGGA-TA-TGGCATCGATATGAGA
25494858 TCTAATGTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
41 3 0.09
42 16 0.46
43 16 0.46
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATAGATGGGATATGGCATCGATATGAGACTTT
Found at i:25494867 original size:43 final size:41
Alignment explanation
Indices: 25494778--25494888 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 41
25494768 TTGAGTTACG
* **
25494778 TGTAAGACCATATATGGGATATGGCATCGATATGAGACTTTG
1 TGTAAGACCATATCT-GGATATGGCATCGATATGAGACTTAA
*
25494820 TGTAAGACCATAGCTGGACTATTGGCATCGATATGAGA-TCTAA
1 TGTAAGACCATATCTGGA-TA-TGGCATCGATATGAGACT-TAA
*
25494863 TGTAAGACTATATCTGGATATGGCAT
1 TGTAAGACCATATCTGGATATGGCAT
25494889 TGGTATGGTG
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
41 9 0.15
42 18 0.30
43 33 0.55
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.31
Consensus pattern (41 bp):
TGTAAGACCATATCTGGATATGGCATCGATATGAGACTTAA
Found at i:25496130 original size:31 final size:29
Alignment explanation
Indices: 25496075--25496143 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 29
25496065 GGTATTTTGA
*
25496075 TATTTTA-TAATTATTTAATTAGATAAATAT
1 TATTTTATTAATTATTTAATAAGAT--ATAT
25496105 TATTTTATTAA-TATTTTAATAAGATATAT
1 TATTTTATTAATTA-TTTAATAAGATATAT
25496134 TATTATTATT
1 TATT-TTATT
25496144 TTATTAGTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 8 0.23
30 14 0.40
31 13 0.37
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (29 bp):
TATTTTATTAATTATTTAATAAGATATAT
Found at i:25498135 original size:16 final size:16
Alignment explanation
Indices: 25498114--25498152 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
25498104 AATGTGTAAG
25498114 ACCATGGTAGAAAGAT
1 ACCATGGTAGAAAGAT
25498130 ACCATGGTAGAAAGAT
1 ACCATGGTAGAAAGAT
25498146 ACCATGG
1 ACCATGG
25498153 CAACCTGGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.41, C:0.15, G:0.26, T:0.18
Consensus pattern (16 bp):
ACCATGGTAGAAAGAT
Found at i:25498136 original size:46 final size:46
Alignment explanation
Indices: 25497964--25498136 Score: 285
Period size: 46 Copynumber: 3.8 Consensus size: 46
25497954 TCTCTAATAT
*
25497964 GAAATGTGTAAGACCATGGTTGAAAGATACCAT-GACAACCTGATAT
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGA-AACCTGATAC
* *
25498010 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAATCTGATAC
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACCTGATAC
*
25498056 GAAATGTGTAAGACCATGGTTGACAGATACCATGGAAACCTGATAC
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACCTGATAC
*
25498102 GAAATGTGTAAGACCATGGTAGAAAGATACCATGG
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGG
25498137 TAGAAAGATA
Statistics
Matches: 118, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
46 117 0.99
47 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.23
Consensus pattern (46 bp):
GAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACCTGATAC
Found at i:25498137 original size:62 final size:62
Alignment explanation
Indices: 25498068--25498198 Score: 217
Period size: 62 Copynumber: 2.1 Consensus size: 62
25498058 AATGTGTAAG
* *
25498068 ACCATGGTTGACAGATACCATGGAAACCTGATACGAAATGTGTAAGACCATGGTAGAAAGAT
1 ACCATGGTAGAAAGATACCATGGAAACCTGATACGAAATGTGTAAGACCATGGTAGAAAGAT
* * *
25498130 ACCATGGTAGAAAGATACCATGGCAACCTGGTACGAAATGTGTAAGACCATGGTTGAAAGAT
1 ACCATGGTAGAAAGATACCATGGAAACCTGATACGAAATGTGTAAGACCATGGTAGAAAGAT
25498192 ACCATGG
1 ACCATGG
25498199 CAACCTGATA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (62 bp):
ACCATGGTAGAAAGATACCATGGAAACCTGATACGAAATGTGTAAGACCATGGTAGAAAGAT
Found at i:25498169 original size:108 final size:108
Alignment explanation
Indices: 25498022--25498244 Score: 374
Period size: 108 Copynumber: 2.1 Consensus size: 108
25498012 AATGTGTAAG
* * * *
25498022 ACCATGGTTGAAAGATACCATGGTAATCTGATACGAAATGTGTAAGACCATGGTTGACAGATACC
1 ACCATGGTAGAAAGATACCATGGCAACCTGATACGAAATGTGTAAGACCATGGTTGAAAGATACC
25498087 ATGGAAACCTGATACGAAATGTGTAAGACCATGGTAGAAAGAT
66 ATGGAAACCTGATACGAAATGTGTAAGACCATGGTAGAAAGAT
*
25498130 ACCATGGTAGAAAGATACCATGGCAACCTGGTACGAAATGTGTAAGACCATGGTTGAAAGATACC
1 ACCATGGTAGAAAGATACCATGGCAACCTGATACGAAATGTGTAAGACCATGGTTGAAAGATACC
* * *
25498195 ATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGAT
66 ATGGAAACCTGATACGAAATGTGTAAGACCATGGTAGAAAGAT
25498238 ACCATGG
1 ACCATGG
25498245 CAACGTGATA
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
108 107 1.00
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (108 bp):
ACCATGGTAGAAAGATACCATGGCAACCTGATACGAAATGTGTAAGACCATGGTTGAAAGATACC
ATGGAAACCTGATACGAAATGTGTAAGACCATGGTAGAAAGAT
Found at i:25498180 original size:46 final size:46
Alignment explanation
Indices: 25498130--25498294 Score: 267
Period size: 46 Copynumber: 3.6 Consensus size: 46
25498120 GTAGAAAGAT
* * *
25498130 ACCATGGTAGAAAGATACCATGGCAACCTGGTACGAAATGTGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
25498176 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
* ** *
25498222 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAATAAT
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
25498268 ACCATGGTTGAAAGATACCATGGCAAC
1 ACCATGGTTGAAAGATACCATGGCAAC
25498295 ATAGCAGAAA
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 112 1.00
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (46 bp):
ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
Done.