Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 93 of 438
Found at i:25881308 original size:20 final size:20
Alignment explanation
Indices: 25881283--25881348 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
25881273 ATTACTGGCA
25881283 GCTTGTTTGCAATTTTGATG
1 GCTTGTTTGCAATTTTGATG
*** * * *
25881303 GCTTGTCCACAATATTGCTA
1 GCTTGTTTGCAATTTTGATG
*
25881323 GCTTGTTTGCAATTTTGGTG
1 GCTTGTTTGCAATTTTGATG
25881343 GCTTGT
1 GCTTGT
25881349 CCATAGTACT
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.15, C:0.15, G:0.24, T:0.45
Consensus pattern (20 bp):
GCTTGTTTGCAATTTTGATG
Found at i:25881336 original size:40 final size:40
Alignment explanation
Indices: 25881200--25881351 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
25881190 AAGTATTGGA
* * *
25881200 AGCTTGTCTGCAATTCTT-GTGGTTTGTACC-CATTATTAG-T
1 AGCTTGTTTGCAATT-TTGGTGGCTTGT-CCACAATATT-GCT
*** * *
25881240 AGCTTGTTTGCAACAATGGTGGCTTGACCAC-ATATTACT
1 AGCTTGTTTGCAATTTTGGTGGCTTGTCCACAATATTGCT
*
25881279 GGCAGCTTGTTTGCAATTTTGATGGCTTGTCCACAATATTGCT
1 ---AGCTTGTTTGCAATTTTGGTGGCTTGTCCACAATATTGCT
25881322 AGCTTGTTTGCAATTTTGGTGGCTTGTCCA
1 AGCTTGTTTGCAATTTTGGTGGCTTGTCCA
25881352 TAGTACTGGC
Statistics
Matches: 90, Mismatches: 15, Indels: 14
0.76 0.13 0.12
Matches are distributed among these distances:
39 8 0.09
40 49 0.54
42 26 0.29
43 7 0.08
ACGTcount: A:0.19, C:0.18, G:0.22, T:0.40
Consensus pattern (40 bp):
AGCTTGTTTGCAATTTTGGTGGCTTGTCCACAATATTGCT
Found at i:25881342 original size:82 final size:79
Alignment explanation
Indices: 25881191--25881394 Score: 205
Period size: 82 Copynumber: 2.5 Consensus size: 79
25881181 TTAAAGAGGA
* * * *
25881191 AGTATTGGAAGCTTGTCTGCAATTCTTGTGGTTTGTACC-CATTATTAGTAGCTTGTTTGCAACA
1 AGTACTGGCAGCTTGTCTGCAATT-TTGTGGCTTGT-CCACAATATTAGTAGCTTGTTTGCAACA
25881255 ATGGTGGCTTGACCACAT
64 ATGGTGGCTTG-CC-CAT
* * **
25881273 ATTACTGGCAGCTTGTTTGCAATTTTGATGGCTTGTCCACAATATT-GCTAGCTTGTTTGCAATT
1 AGTACTGGCAGCTTGTCTGCAATTTTG-TGGCTTGTCCACAATATTAG-TAGCTTGTTTGCAACA
* *
25881337 TTGGTGGCTTGTCCAT
64 ATGGTGGCTTGCCCAT
* * * *
25881353 AGTACTGGCAGTTTATCTGCAATACTGGTGGCTTGTCCACAA
1 AGTACTGGCAGCTTGTCTGCAAT-TTTGTGGCTTGTCCACAA
25881395 ACTGGTGTGT
Statistics
Matches: 102, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
80 36 0.35
81 9 0.09
82 57 0.56
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.38
Consensus pattern (79 bp):
AGTACTGGCAGCTTGTCTGCAATTTTGTGGCTTGTCCACAATATTAGTAGCTTGTTTGCAACAAT
GGTGGCTTGCCCAT
Found at i:25881374 original size:40 final size:40
Alignment explanation
Indices: 25881240--25881399 Score: 144
Period size: 40 Copynumber: 4.0 Consensus size: 40
25881230 CATTATTAGT
*** * *
25881240 AGCTTGTTTGCAACAATGGTGGCTTGACCACATATTACTGGC
1 AGCTTGTTTGCAATTTTGGTGGCTTG-TC-CATAATACTGGC
* * *
25881282 AGCTTGTTTGCAATTTTGATGGCTTGTCCACAATA-TTGC
1 AGCTTGTTTGCAATTTTGGTGGCTTGTCCATAATACTGGC
*
25881321 TAGCTTGTTTGCAATTTTGGTGGCTTGTCCATAGTACTGGC
1 -AGCTTGTTTGCAATTTTGGTGGCTTGTCCATAATACTGGC
* * * ** *
25881362 AGTTTATCTGCAATACTGGTGGCTTGTCCACAA-ACTGG
1 AGCTTGTTTGCAATTTTGGTGGCTTGTCCATAATACTGG
25881400 TGTGTTATTG
Statistics
Matches: 97, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 8 0.08
40 63 0.65
41 4 0.04
42 22 0.23
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (40 bp):
AGCTTGTTTGCAATTTTGGTGGCTTGTCCATAATACTGGC
Found at i:25881389 original size:80 final size:82
Alignment explanation
Indices: 25881239--25881394 Score: 199
Period size: 80 Copynumber: 1.9 Consensus size: 82
25881229 CCATTATTAG
* * * **
25881239 TAGCTTGTTTGCAACAATGGTGGCTTGACCACATATTACTGGCAGCTTGTTTGCAATTTTGATGG
1 TAGCTTGTTTGCAACAATGGTGGCTTGACCACATAGTACTGGCAGCTTATCTGCAATACTGATGG
25881304 CTTGTCCACAATATTGC
66 CTTGTCCACAATATTGC
*** * * *
25881321 TAGCTTGTTTGCAATTTTGGTGGCTTG-TC-CATAGTACTGGCAGTTTATCTGCAATACTGGTGG
1 TAGCTTGTTTGCAACAATGGTGGCTTGACCACATAGTACTGGCAGCTTATCTGCAATACTGATGG
25881384 CTTGTCCACAA
66 CTTGTCCACAA
25881395 ACTGGTGTGT
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
80 38 0.60
81 1 0.02
82 24 0.38
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (82 bp):
TAGCTTGTTTGCAACAATGGTGGCTTGACCACATAGTACTGGCAGCTTATCTGCAATACTGATGG
CTTGTCCACAATATTGC
Found at i:25884930 original size:12 final size:13
Alignment explanation
Indices: 25884908--25884936 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
25884898 TAATTAAATG
25884908 AATTAAAAAGCCA
1 AATTAAAAAGCCA
25884921 AATT-AAAAGCCA
1 AATTAAAAAGCCA
25884933 AATT
1 AATT
25884937 TTGTCCATGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.21
Consensus pattern (13 bp):
AATTAAAAAGCCA
Found at i:25887163 original size:28 final size:28
Alignment explanation
Indices: 25887131--25887199 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
25887121 GCGTAGATCA
25887131 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
25887159 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
25887187 CGATA-TACCCCTA
1 CGAAATTACCCCTA
25887200 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:25889014 original size:42 final size:42
Alignment explanation
Indices: 25888968--25889077 Score: 143
Period size: 42 Copynumber: 2.6 Consensus size: 42
25888958 AAGACTATGA
*
25888968 GTAAGACCATATCTGGGATA-GGACATCTATAT-GAGACTTCAT
1 GTAAGACCATATCTGGGATATGG-CATCGATATGGA-ACTTCAT
* * *
25889010 GTAAGACCATATCTAGGATATGGCATCGATATGGAATTTCGT
1 GTAAGACCATATCTGGGATATGGCATCGATATGGAACTTCAT
*
25889052 GTAAGACCATAGCTGGGATATGGCAT
1 GTAAGACCATATCTGGGATATGGCAT
25889078 TGGTATGGTA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
42 56 0.93
43 4 0.07
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (42 bp):
GTAAGACCATATCTGGGATATGGCATCGATATGGAACTTCAT
Found at i:25889096 original size:42 final size:42
Alignment explanation
Indices: 25889009--25889096 Score: 95
Period size: 42 Copynumber: 2.1 Consensus size: 42
25888999 TGAGACTTCA
* ****
25889009 TGTAAGACCATATCTAGGATATGGCATCGATATGGAATTTCG
1 TGTAAGACCATAGCTAGGATATGGCATCGATATGGAACCAAG
* * * *
25889051 TGTAAGACCATAGCTGGGATATGGCATTGGTATGGTACCAAG
1 TGTAAGACCATAGCTAGGATATGGCATCGATATGGAACCAAG
25889093 TGTA
1 TGTA
25889097 CGAGACTCCC
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATAGCTAGGATATGGCATCGATATGGAACCAAG
Found at i:25892246 original size:23 final size:23
Alignment explanation
Indices: 25892213--25892268 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
25892203 TAGGTTAAAT
*
25892213 AATTAAAATATATAGGAAT-AATAA
1 AATTAAAATAT-TA-AAATAAATAA
25892237 AA-TAAAATATTAAAATAAATAA
1 AATTAAAATATTAAAATAAATAA
25892259 AATTAAAATA
1 AATTAAAATA
25892269 AAGGTTTGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 3 0.10
22 9 0.31
23 15 0.52
24 2 0.07
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.29
Consensus pattern (23 bp):
AATTAAAATATTAAAATAAATAA
Found at i:25895402 original size:31 final size:31
Alignment explanation
Indices: 25895364--25895425 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
25895354 TATTTTAAGC
*
25895364 TAGGGTTCATGTATGCAAAATGACCCATGTG
1 TAGGGTTCATGTATGCAAAATGAACCATGTG
25895395 TAGGGTTCATGTATGCAAAATGAACCATGTG
1 TAGGGTTCATGTATGCAAAATGAACCATGTG
25895426 AGACATGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (31 bp):
TAGGGTTCATGTATGCAAAATGAACCATGTG
Found at i:25900933 original size:14 final size:14
Alignment explanation
Indices: 25900914--25900941 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25900904 TGTATTTGCC
25900914 TTAAAAATTTGGAG
1 TTAAAAATTTGGAG
25900928 TTAAAAATTTGGAG
1 TTAAAAATTTGGAG
25900942 ACACCATTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (14 bp):
TTAAAAATTTGGAG
Found at i:25903155 original size:31 final size:31
Alignment explanation
Indices: 25903112--25903257 Score: 258
Period size: 31 Copynumber: 4.7 Consensus size: 31
25903102 TTAGTCTTCA
*
25903112 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
25903142 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
25903173 CATATCACAGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
25903204 CATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
25903235 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
25903258 ACTGTAAACG
Statistics
Matches: 110, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.05
31 105 0.95
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:25903329 original size:42 final size:42
Alignment explanation
Indices: 25903282--25903413 Score: 255
Period size: 42 Copynumber: 3.1 Consensus size: 42
25903272 GGCCCTTAGG
*
25903282 CCATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGC
1 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGC
25903324 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGC
1 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGC
25903366 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGC
1 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGC
25903408 CCATTT
1 CCATTT
25903414 GGGGAGACTA
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (42 bp):
CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGC
Found at i:25903575 original size:24 final size:25
Alignment explanation
Indices: 25903548--25903629 Score: 80
Period size: 25 Copynumber: 3.3 Consensus size: 25
25903538 TTGGAGGCCT
25903548 AGCCTCTTT-TAAT-AACTGGGGCAA
1 AGCC-CTTTCTAATAAACTGGGGCAA
*
25903572 AGCCCTTTCTGATAAACTGGGGCAA
1 AGCCCTTTCTAATAAACTGGGGCAA
* ** *
25903597 AGCACTTT-TCGGTAAACTGGGGCAG
1 AGCCCTTTCT-AATAAACTGGGGCAA
25903622 AGCCCTTT
1 AGCCCTTT
25903630 TAGCACTTCT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 8 0.16
25 38 0.76
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AGCCCTTTCTAATAAACTGGGGCAA
Found at i:25903593 original size:25 final size:25
Alignment explanation
Indices: 25903561--25903630 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
25903551 CTCTTTTAAT
25903561 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
* *
25903586 AACTGGGGCAAAGCACTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
25903611 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
25903631 AGCACTTCTT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 36 0.90
26 4 0.10
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:25904588 original size:27 final size:27
Alignment explanation
Indices: 25904555--25904763 Score: 143
Period size: 27 Copynumber: 7.7 Consensus size: 27
25904545 TTGGTAAATC
25904555 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
** **
25904582 TGTAAACCAATAGTATTTCTA-TAATTTT
1 TACAAACCAAGGGTATTTC-AGTAA-TTT
* * *
25904610 TAGAAAGTCAAGGGTATTTCTGTAATTT
1 TACAAA-CCAAGGGTATTTCAGTAATTT
** * * **
25904638 TGTAAATCAGGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
*** *
25904665 TACAAATTGAGGGTATTTCGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
* *
25904692 CACAAA-CTAGTGGTATTTCAGTAATTT
1 TACAAACCAAG-GGTATTTCAGTAATTT
* * **
25904719 TACAAACTAGGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
* *
25904746 TACAAACTAGGGGTATTT
1 TACAAACCAAGGGTATTT
25904764 TGGCAATTTC
Statistics
Matches: 145, Mismatches: 31, Indels: 12
0.77 0.16 0.06
Matches are distributed among these distances:
26 2 0.01
27 114 0.79
28 16 0.11
29 13 0.09
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
TACAAACCAAGGGTATTTCAGTAATTT
Found at i:25904663 original size:56 final size:54
Alignment explanation
Indices: 25904555--25904691 Score: 141
Period size: 56 Copynumber: 2.5 Consensus size: 54
25904545 TTGGTAAATC
* *
25904555 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATAGTATTTCTATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGAGTATTTCTATAA-TTT
* * * * * *
25904610 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTT-TGGTAATTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAACCAAGAGTATTTCT-ATAATTT
** *
25904665 TACAAATTGAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
25904692 CACAAACTAG
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
54 18 0.26
55 14 0.21
56 36 0.53
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGAGTATTTCTATAATTT
Found at i:25904738 original size:81 final size:81
Alignment explanation
Indices: 25904622--25904777 Score: 226
Period size: 81 Copynumber: 1.9 Consensus size: 81
25904612 GAAAGTCAAG
* ** *
25904622 GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGG
1 GGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGG
*
25904686 TAATTTCACAAACTAGT
65 CAATTTCACAAACTAGT
*
25904703 GGTATTTCAGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGTATTTCAGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGG
25904767 CAATTTCACAA
65 CAATTTCACAA
25904778 TTGAGGGTAA
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 1 0.01
81 64 0.96
82 2 0.03
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (81 bp):
GGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGC
AATTTCACAAACTAGT
Found at i:25904784 original size:27 final size:27
Alignment explanation
Indices: 25904621--25904777 Score: 176
Period size: 27 Copynumber: 5.8 Consensus size: 27
25904611 AGAAAGTCAA
**
25904621 GGGTATTTCT-GTAATTTTGTAAA-TCAG
1 GGGTATTT-TGGTAATTTTACAAACT-AG
*
25904648 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
25904674 AGGGTATTTCGGTAATTTCACAAACTAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* **
25904702 TGGTATTTCAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
25904729 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
25904756 GGGTATTTTGGCAATTTCACAA
1 GGGTATTTTGGTAATTTTACAA
25904778 TTGAGGGTAA
Statistics
Matches: 113, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
26 2 0.02
27 109 0.96
28 2 0.02
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:25904850 original size:54 final size:54
Alignment explanation
Indices: 25904776--25904878 Score: 163
Period size: 54 Copynumber: 1.9 Consensus size: 54
25904766 GCAATTTCAC
*
25904776 AATTGAGGGTAAAACAGTAATTTTGTAAA-CTGAAGGTAAAATGGTAATTTTGTA
1 AATTGAGGGTAAAACAGTAATTTTGTAAATCAG-AGGTAAAATGGTAATTTTGTA
* *
25904830 AATTGAGGGTAAAACGGTAATTTTGTAAATCAGGGGTAAAATGGTAATT
1 AATTGAGGGTAAAACAGTAATTTTGTAAATCAGAGGTAAAATGGTAATT
25904879 CTACAAATCG
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
54 43 0.96
55 2 0.04
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (54 bp):
AATTGAGGGTAAAACAGTAATTTTGTAAATCAGAGGTAAAATGGTAATTTTGTA
Found at i:25904859 original size:27 final size:27
Alignment explanation
Indices: 25904776--25904878 Score: 136
Period size: 27 Copynumber: 3.8 Consensus size: 27
25904766 GCAATTTCAC
*
25904776 AATTGAGGGTAAAACAGTAATTTTGTA
1 AATTGAGGGTAAAACGGTAATTTTGTA
* * *
25904803 AACTGAAGGTAAAATGGTAATTTTGTA
1 AATTGAGGGTAAAACGGTAATTTTGTA
25904830 AATTGAGGGTAAAACGGTAATTTTGTA
1 AATTGAGGGTAAAACGGTAATTTTGTA
* *
25904857 AA-TCAGGGGTAAAATGGTAATT
1 AATTGA-GGGTAAAACGGTAATT
25904879 CTACAAATCG
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
26 2 0.03
27 64 0.97
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (27 bp):
AATTGAGGGTAAAACGGTAATTTTGTA
Found at i:25904892 original size:54 final size:54
Alignment explanation
Indices: 25904780--25904892 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
25904770 TTTCACAATT
* * ** *
25904780 GAGGGTAAAACAGTAATTTTGTAAACTGAAGGTAAAATGGTAATTTTGTAAATT
1 GAGGGTAAAACAGTAATTTTGTAAACAGAAGGTAAAATGGTAATTCTACAAATC
* *
25904834 GAGGGTAAAACGGTAATTTTGTAAATCAG-GGGTAAAATGGTAATTCTACAAATC
1 GAGGGTAAAACAGTAATTTTGTAAA-CAGAAGGTAAAATGGTAATTCTACAAATC
25904888 GAGGG
1 GAGGG
25904893 CATTTCAGTA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 49 0.96
55 2 0.04
ACGTcount: A:0.39, C:0.06, G:0.26, T:0.29
Consensus pattern (54 bp):
GAGGGTAAAACAGTAATTTTGTAAACAGAAGGTAAAATGGTAATTCTACAAATC
Found at i:25925968 original size:13 final size:13
Alignment explanation
Indices: 25925950--25925974 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25925940 TAAAATCATA
25925950 ATTATAATAATTT
1 ATTATAATAATTT
25925963 ATTATAATAATT
1 ATTATAATAATT
25925975 CAGTAAACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTATAATAATTT
Found at i:25927030 original size:18 final size:19
Alignment explanation
Indices: 25926995--25927030 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
25926985 AAAGTGATAA
25926995 AATTAAAAAGATAATAAAT
1 AATTAAAAAGATAATAAAT
*
25927014 AATTAAATAGA-AATAAA
1 AATTAAAAAGATAATAAA
25927031 AATCATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (19 bp):
AATTAAAAAGATAATAAAT
Found at i:25939393 original size:55 final size:55
Alignment explanation
Indices: 25939333--25939441 Score: 200
Period size: 55 Copynumber: 2.0 Consensus size: 55
25939323 ATATTTTGAG
*
25939333 TAGAAAATCTTTGTTTGCTTTATGAGCAATAAATACTCGATTGCTATTGTCTGAA
1 TAGAAAATCTTTGTTTGCTTTATGAGCAACAAATACTCGATTGCTATTGTCTGAA
*
25939388 TAGAAAATCTTTTTTTGCTTTATGAGCAACAAATACTCGATTGCTATTGTCTGA
1 TAGAAAATCTTTGTTTGCTTTATGAGCAACAAATACTCGATTGCTATTGTCTGA
25939442 TGAAAGATTA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (55 bp):
TAGAAAATCTTTGTTTGCTTTATGAGCAACAAATACTCGATTGCTATTGTCTGAA
Found at i:25941291 original size:16 final size:16
Alignment explanation
Indices: 25941272--25941302 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25941262 CTTCTTCACT
25941272 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
25941288 TACTTACTTACTTAA
1 TACTCACTTACTTAA
25941303 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:25941308 original size:20 final size:20
Alignment explanation
Indices: 25941269--25941308 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
25941259 AAACTTCTTC
* *
25941269 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
25941289 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
25941309 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:25941620 original size:52 final size:53
Alignment explanation
Indices: 25941494--25941738 Score: 200
Period size: 52 Copynumber: 4.7 Consensus size: 53
25941484 ACACGGGTAC
* * * * * *
25941494 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTTTTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGATACCTTGCCTTATGAAA
* * * *
25941543 CTTACCATTGCCATGTCTTGACATGGTCTTACACGCTAGCCTT-CCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGATA-CCTTGCCTTATGAAA
* * ** *
25941595 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGATACC-TTGCCTTAT-GAAA
* * *
25941650 CTTATCAATGCCATGTCTT-ACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGA-TACCTTGCCTTATGAAA
* *
25941702 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATG
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATG
25941739 GTATCCTTAA
Statistics
Matches: 159, Mismatches: 25, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
49 33 0.21
51 2 0.01
52 38 0.24
53 20 0.13
54 32 0.20
55 34 0.21
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGATACCTTGCCTTATGAAA
Found at i:25941737 original size:55 final size:52
Alignment explanation
Indices: 25941494--25941746 Score: 193
Period size: 55 Copynumber: 4.8 Consensus size: 52
25941484 ACACGGGTAC
* * *
25941494 CTTACC-ATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT--TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACAT-GTATCCTTCCTTAGAAA
* * *
25941543 CTTACC-ATTGCCATGTCTTGACATGGTCTTACACGCTAGCCTTCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATG-TATCCTTCCTTA-GAAA
* * * *
25941595 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACAT-GTATCC-TT-CC-T-TAGAAA
* * *
25941650 CTTATCAA-TGCCATGTCTT-ACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATG-TATCCTT-CCTTAGAAA
* *
25941702 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACAT-GTATCCTT
25941747 AAACCCTAAT
Statistics
Matches: 164, Mismatches: 22, Indels: 30
0.76 0.10 0.14
Matches are distributed among these distances:
48 1 0.01
49 36 0.22
51 4 0.02
52 38 0.23
53 14 0.09
54 29 0.18
55 41 0.25
56 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (52 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGTATCCTTCCTTAGAAA
Found at i:25947983 original size:136 final size:136
Alignment explanation
Indices: 25947735--25948001 Score: 489
Period size: 136 Copynumber: 2.0 Consensus size: 136
25947725 TCTGATACCA
25947735 ATAAATGTAACGCCCCGTACCCGAGACCGTCACCGGAGTCGAACACGAGGTGTTAACGGACTTAA
1 ATAAATGTAACGCCCCGTACCCGAGACCGTCACCGGAGTCGAACACGAGGTGTTAACGGACTTAA
* * *
25947800 TTCATTACTTAAACAGCTCAAACAATTTATTTTTAAAACTTCTAGAGAAGCTGGCAATCTGTGTC
66 TTCATTACTTAAACAACTCAAACAATTTATTTTTAAAACTTCCAGAGAAGCTGGCAATCTGCGTC
25947865 AAAAAT
131 AAAAAT
*
25947871 ATAAATGTAACGCCCCGTACCCGAGACCGTCGCCGGAGTCGAACACGAGGTGTTAACGGACTTAA
1 ATAAATGTAACGCCCCGTACCCGAGACCGTCACCGGAGTCGAACACGAGGTGTTAACGGACTTAA
*
25947936 TTTATTACTTAAACAACTCAAACAATTTATTTTTAAAACTTCCAGAGAAGCTGGCAATCTGCGTC
66 TTCATTACTTAAACAACTCAAACAATTTATTTTTAAAACTTCCAGAGAAGCTGGCAATCTGCGTC
25948001 A
131 A
25948002 CAGTCGCTTA
Statistics
Matches: 126, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
136 126 1.00
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (136 bp):
ATAAATGTAACGCCCCGTACCCGAGACCGTCACCGGAGTCGAACACGAGGTGTTAACGGACTTAA
TTCATTACTTAAACAACTCAAACAATTTATTTTTAAAACTTCCAGAGAAGCTGGCAATCTGCGTC
AAAAAT
Found at i:25948988 original size:16 final size:16
Alignment explanation
Indices: 25948969--25948999 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25948959 CTTCTTCACT
25948969 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
25948985 TACTTACTTACTTAA
1 TACTCACTTACTTAA
25949000 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:25949005 original size:20 final size:20
Alignment explanation
Indices: 25948966--25949005 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
25948956 AAACTTCTTC
* *
25948966 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
25948986 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
25949006 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:25949445 original size:55 final size:54
Alignment explanation
Indices: 25949191--25949445 Score: 251
Period size: 55 Copynumber: 4.8 Consensus size: 54
25949181 ACACAGGTAC
* * *
25949191 CTTACC-ATTGCCATGACTTGTCATGGTCTTACATGGTATCATT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* * *
25949240 CTTACC-ATTTCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * * *
25949293 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTCCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAA
* * * *
25949348 CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
*
25949401 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
25949446 AAACCCTAAT
Statistics
Matches: 168, Mismatches: 25, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
49 38 0.23
52 4 0.02
53 42 0.25
54 12 0.07
55 70 0.42
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:25952514 original size:28 final size:28
Alignment explanation
Indices: 25952482--25952595 Score: 131
Period size: 29 Copynumber: 4.0 Consensus size: 28
25952472 TACCTGTATC
* *
25952482 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* *
25952510 TGGCCCATTAGGCCTAAATCACCTGT-ATA
1 TGGCCCATTAGGCC-CAATCACAT-TCATA
*
25952539 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
25952568 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
25952596 ATCATGCTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
28 25 0.34
29 47 0.64
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:25952537 original size:57 final size:58
Alignment explanation
Indices: 25952473--25952581 Score: 166
Period size: 58 Copynumber: 1.9 Consensus size: 58
25952463 AATTTCACAT
* *
25952473 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCTAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCTAAATC
* * *
25952530 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCC
25952582 CAGTCACATT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.28
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCTAAATC
Found at i:25958035 original size:43 final size:43
Alignment explanation
Indices: 25958008--25958299 Score: 365
Period size: 43 Copynumber: 6.8 Consensus size: 43
25957998 TTAGTAACGT
* * *
25958008 TTTTCCCACAAACGCTGATAAAGAACATGATCTTTAGCGGCGC
1 TTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGC
*
25958051 TTTTCCCACAAACGCCGCTAGAGAACATGACCTTTAGCGGCGC
1 TTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGC
*
25958094 TTTTCCTACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGC
1 TTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGC
* * *
25958137 TTGTCCCACAAACACCGCTAAAGAACATGACCTTTAACGGCGC
1 TTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGC
* * *
25958180 TTTTCCTACAAACACCGCTATAGAACA-GACCTTTAGCGGCGC
1 TTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGC
* * * * * **
25958222 TTTTGCCACAAACGGCACTATA-AA-ATAGACATTTAGCGATGC
1 TTTTCCCACAAACGCCGCTAAAGAACAT-GACCTTTAGCGGCGC
* * *
25958264 TTTTCTCACAAACGCCGCTAAAAAATATGACCTTTA
1 TTTTCCCACAAACGCCGCTAAAGAACATGACCTTTA
25958300 AAAAATTATT
Statistics
Matches: 217, Mismatches: 28, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
40 1 0.00
41 2 0.01
42 60 0.28
43 152 0.70
44 2 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (43 bp):
TTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGC
Found at i:25958415 original size:34 final size:33
Alignment explanation
Indices: 25958354--25958422 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 33
25958344 TGTATTATGT
25958354 TTAATTTTTAAATTTGAAATTTAAACTATATAC
1 TTAATTTTTAAATTTGAAATTTAAACTATATAC
*
25958387 TTAATTTTTGAAATTT-AAACTTTCAACTATATAC
1 TTAATTTTT-AAATTTGAAA-TTTAAACTATATAC
25958421 TT
1 TT
25958423 TTAAGGATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
33 12 0.36
34 21 0.64
ACGTcount: A:0.39, C:0.09, G:0.03, T:0.49
Consensus pattern (33 bp):
TTAATTTTTAAATTTGAAATTTAAACTATATAC
Found at i:25974218 original size:15 final size:15
Alignment explanation
Indices: 25974170--25974218 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
25974160 GTATTGTAAT
*
25974170 TTGGATTTCCTTATC
1 TTGGATTTCTTTATC
* *
25974185 ATGGATTTTTTTATC
1 TTGGATTTCTTTATC
*
25974200 TTGGATTTCTTTATT
1 TTGGATTTCTTTATC
25974215 TTGG
1 TTGG
25974219 GCTCCTCCGT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.14, C:0.10, G:0.16, T:0.59
Consensus pattern (15 bp):
TTGGATTTCTTTATC
Found at i:25975920 original size:40 final size:39
Alignment explanation
Indices: 25975876--25976057 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
25975866 GTTCAAAACA
* * ** * *
25975876 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
25975916 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
25975956 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
25975995 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
25976034 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
25976058 CTCGAACATT
Statistics
Matches: 129, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 89 0.69
40 40 0.31
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:25975987 original size:39 final size:39
Alignment explanation
Indices: 25975906--25976057 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
25975896 TATGGTAACC
* * * *
25975906 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
25975946 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
25975985 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
25976024 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
25976058 CTCGAACATT
Statistics
Matches: 106, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:25983217 original size:39 final size:39
Alignment explanation
Indices: 25983138--25983249 Score: 152
Period size: 39 Copynumber: 2.8 Consensus size: 39
25983128 TGGTAACCCA
*
25983138 CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCG
1 CACAATTGCCTTCGGG-CTTAACCCGGATATCACAACTCG
* * * *
25983178 CACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCTCG
1 CACAATTGCCTTCGGGCTTAACCCGGATATCACAACTCG
* *
25983217 CACAATTGCCTTCGGGCTTATCCTGGATATCAC
1 CACAATTGCCTTCGGGCTTAACCCGGATATCAC
25983250 TCGAACATTC
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
39 48 0.76
40 15 0.24
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (39 bp):
CACAATTGCCTTCGGGCTTAACCCGGATATCACAACTCG
Found at i:25984576 original size:14 final size:15
Alignment explanation
Indices: 25984557--25984585 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
25984547 AAAGTTAATA
25984557 TGGATT-TTCTTGTC
1 TGGATTATTCTTGTC
25984571 TGGATTATTCTTGTC
1 TGGATTATTCTTGTC
25984586 CTTGAAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.10, C:0.14, G:0.21, T:0.55
Consensus pattern (15 bp):
TGGATTATTCTTGTC
Found at i:25990758 original size:39 final size:38
Alignment explanation
Indices: 25990673--25990858 Score: 223
Period size: 39 Copynumber: 4.7 Consensus size: 38
25990663 ACTACTTGCT
*
25990673 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAG-CCCGGTTA-A-TAACTCGCA
25990713 CAAATGCCTTCGGGACTTAGCCCGGTTCAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-AATAACTCGCA
*
25990752 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-T-TAATAACTCGCA
* * * * *
25990792 CAATTGCCTTCGGG-TTTAGCCCGGAATTAGTTACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG--TTAATAACTCGCA
25990831 CAAATGCCTTCGGGACTTAGCCCGGTTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA
25990859 TCATCCGAAT
Statistics
Matches: 130, Mismatches: 10, Indels: 14
0.84 0.06 0.09
Matches are distributed among these distances:
38 3 0.02
39 63 0.48
40 61 0.47
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (38 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTAATAACTCGCA
Found at i:25990776 original size:79 final size:78
Alignment explanation
Indices: 25990673--25990859 Score: 243
Period size: 79 Copynumber: 2.4 Consensus size: 78
25990663 ACTACTTGCT
*
25990673 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAATAACTCACACAAATGCCTTCGGG-CTTAGCCCG
*
25990737 G-TTCAATAACTCGCA
64 GATT-AATAACTAGCA
* * * * *
25990752 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTGCCTTCGGGTTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCACACAAATGCCTTCGGGCTTAGCCCGG-
* *
25990817 ATTAGTTACTAGCA
65 ATTAATAACTAGCA
25990831 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
25990860 CATCCGAATA
Statistics
Matches: 94, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
78 9 0.10
79 82 0.87
80 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCACACAAATGCCTTCGGGCTTAGCCCGGA
TTAATAACTAGCA
Found at i:26004367 original size:15 final size:15
Alignment explanation
Indices: 26004319--26004367 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
26004309 GTATTGTAAT
*
26004319 TTGGATTTCCTTATC
1 TTGGATTTCTTTATC
* *
26004334 ATGGATTTTTTTATC
1 TTGGATTTCTTTATC
*
26004349 TTGGATTTCTTTATT
1 TTGGATTTCTTTATC
26004364 TTGG
1 TTGG
26004368 GCTCCTCCGT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.14, C:0.10, G:0.16, T:0.59
Consensus pattern (15 bp):
TTGGATTTCTTTATC
Found at i:26004395 original size:15 final size:15
Alignment explanation
Indices: 26004319--26004397 Score: 52
Period size: 15 Copynumber: 5.3 Consensus size: 15
26004309 GTATTGTAAT
26004319 TTGGATTTC-CTTATC
1 TTGGATTTCTC-TATC
* * *
26004334 ATGGATTTTTTTATC
1 TTGGATTTCTCTATC
* *
26004349 TTGGATTTCTTTATT
1 TTGGATTTCTCTATC
** * **
26004364 TTGGGCTCCTCCGTC
1 TTGGATTTCTCTATC
26004379 TTGGATTTCTCTATC
1 TTGGATTTCTCTATC
26004394 TTGG
1 TTGG
26004398 TTTTTCAATT
Statistics
Matches: 45, Mismatches: 18, Indels: 2
0.69 0.28 0.03
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.11, C:0.18, G:0.18, T:0.53
Consensus pattern (15 bp):
TTGGATTTCTCTATC
Found at i:26005088 original size:14 final size:15
Alignment explanation
Indices: 26005069--26005097 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26005059 AAAGTTAATA
26005069 TGGATT-TTCTTGTC
1 TGGATTATTCTTGTC
26005083 TGGATTATTCTTGTC
1 TGGATTATTCTTGTC
26005098 CTTGAAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.10, C:0.14, G:0.21, T:0.55
Consensus pattern (15 bp):
TGGATTATTCTTGTC
Found at i:26006982 original size:30 final size:28
Alignment explanation
Indices: 26006946--26007046 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
26006936 GACAAGAGTG
* *
26006946 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
26006976 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
*
26007004 GCACTAAGTGTGCGAGTTGAATGTATACA
1 GCACTAAGTGTGCGAGTTTAAT-TATACA
26007033 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
26007047 GATTCACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
28 26 0.41
29 19 0.30
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:26012497 original size:22 final size:21
Alignment explanation
Indices: 26012445--26012499 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
26012435 ATGGCCTACA
**
26012445 ACATGGGCGTGTCCCAGGGTC
1 ACATGGGCGTGTCCCAGGACC
* * *
26012466 ACACGAGCGTGTCCCTTGGACC
1 ACATGGGCGTGTCCC-AGGACC
26012488 ACATGGGCGTGT
1 ACATGGGCGTGT
26012500 GAGTCCTGTA
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 13 0.50
22 13 0.50
ACGTcount: A:0.16, C:0.29, G:0.35, T:0.20
Consensus pattern (21 bp):
ACATGGGCGTGTCCCAGGACC
Found at i:26016551 original size:24 final size:24
Alignment explanation
Indices: 26016519--26016600 Score: 110
Period size: 24 Copynumber: 3.4 Consensus size: 24
26016509 ATGATATAAT
* * *
26016519 AACCATTTCAATGATATCATTTTC
1 AACCTTTTCAATGGTATCCTTTTC
26016543 AACCTTTTCAATGGTATCCTTTTC
1 AACCTTTTCAATGGTATCCTTTTC
* * *
26016567 GACATTTTCACTGGTATCCTTTTC
1 AACCTTTTCAATGGTATCCTTTTC
26016591 AACCTTTTCA
1 AACCTTTTCA
26016601 TTGTTTCGAG
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.24, C:0.24, G:0.07, T:0.44
Consensus pattern (24 bp):
AACCTTTTCAATGGTATCCTTTTC
Found at i:26019349 original size:23 final size:23
Alignment explanation
Indices: 26019275--26019338 Score: 119
Period size: 23 Copynumber: 2.8 Consensus size: 23
26019265 TCATTGTAAC
26019275 GTAGCCGAAGCTACCACTATATT
1 GTAGCCGAAGCTACCACTATATT
*
26019298 GTAGCCGAAGCTACCGCTATATT
1 GTAGCCGAAGCTACCACTATATT
26019321 GTAGCCGAAGCTACCACT
1 GTAGCCGAAGCTACCACT
26019339 GAGATGTAGC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (23 bp):
GTAGCCGAAGCTACCACTATATT
Found at i:26019882 original size:29 final size:31
Alignment explanation
Indices: 26019819--26019888 Score: 72
Period size: 30 Copynumber: 2.3 Consensus size: 31
26019809 TCAAATTTTG
**
26019819 AAAAATTTACAATTTTACCCCCTAACTTTTC
1 AAAAATTTACAATTTTACCCCCTAACTCGTC
* *
26019850 AAAAA-TTACACTTTTA-CCCCTAAGCTCGTA
1 AAAAATTTACAATTTTACCCCCTAA-CTCGTC
26019880 AAATAATTT
1 AAA-AATTT
26019889 TTATTAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
29 7 0.22
30 16 0.50
31 7 0.22
32 2 0.06
ACGTcount: A:0.39, C:0.23, G:0.03, T:0.36
Consensus pattern (31 bp):
AAAAATTTACAATTTTACCCCCTAACTCGTC
Found at i:26025476 original size:23 final size:23
Alignment explanation
Indices: 26025435--26025566 Score: 158
Period size: 23 Copynumber: 5.7 Consensus size: 23
26025425 ATTGTAATAA
* * **
26025435 AGCCGAAGCTATCATTGTAACGT
1 AGCCGAAGCTACCACTGTATTGT
*
26025458 AGGCGAAGCTACCACTGTATTGT
1 AGCCGAAGCTACCACTGTATTGT
* *
26025481 AGCCGATGCTACCACTATATTGT
1 AGCCGAAGCTACCACTGTATTGT
*
26025504 AGCCGAAGCTACCACTG-AGATGT
1 AGCCGAAGCTACCACTGTA-TTGT
*
26025527 AGCCGAAGCTACCACTATATTGT
1 AGCCGAAGCTACCACTGTATTGT
*
26025550 AGCCGAAGGTACCACTG
1 AGCCGAAGCTACCACTG
26025567 AGATGTAGGC
Statistics
Matches: 92, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
22 1 0.01
23 90 0.98
24 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (23 bp):
AGCCGAAGCTACCACTGTATTGT
Found at i:26025513 original size:46 final size:46
Alignment explanation
Indices: 26025456--26025574 Score: 186
Period size: 46 Copynumber: 2.6 Consensus size: 46
26025446 TCATTGTAAC
* * *
26025456 GTAGGCGAAGCTACCACTGTA-TTGTAGCCGATGCTACCACTATATT
1 GTAGCCGAAGCTACCACTG-AGATGTAGCCGAAGCTACCACTATATT
26025502 GTAGCCGAAGCTACCACTGAGATGTAGCCGAAGCTACCACTATATT
1 GTAGCCGAAGCTACCACTGAGATGTAGCCGAAGCTACCACTATATT
*
26025548 GTAGCCGAAGGTACCACTGAGATGTAG
1 GTAGCCGAAGCTACCACTGAGATGTAG
26025575 GCAATAGATT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
45 1 0.01
46 67 0.99
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (46 bp):
GTAGCCGAAGCTACCACTGAGATGTAGCCGAAGCTACCACTATATT
Found at i:26032441 original size:32 final size:32
Alignment explanation
Indices: 26032400--26032463 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
26032390 TAGTTTATGC
26032400 CTCTCATCAATTGAAATCACACGAAAAAAATT
1 CTCTCATCAATTGAAATCACACGAAAAAAATT
* *
26032432 CTCTCATCAATTGAAATCACTCGAAAACAATT
1 CTCTCATCAATTGAAATCACACGAAAAAAATT
26032464 ATTTGACACA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.44, C:0.23, G:0.06, T:0.27
Consensus pattern (32 bp):
CTCTCATCAATTGAAATCACACGAAAAAAATT
Found at i:26036246 original size:28 final size:29
Alignment explanation
Indices: 26036179--26036279 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
26036169 ATAGTGAATC
*
26036179 CGCACACTTAGTGCTGTATACATTC-AGCT
1 CGCACACTTAGTGCTGTATA-ATTCAAACT
*
26036208 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTGTATAATTCAAACT
* * *
26036236 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTGTATAA-TTCAAACT
26036266 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26036280 CACTCTTGTC
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.37
29 19 0.30
30 19 0.30
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTGTATAATTCAAACT
Found at i:26043922 original size:28 final size:29
Alignment explanation
Indices: 26043855--26043955 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
26043845 ATAGTGAATC
*
26043855 CGCACACTTAGTGCTGTATACATTC-AGCT
1 CGCACACTTAGTGCTGTATA-ATTCAAACT
*
26043884 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTGTATAATTCAAACT
* * *
26043912 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTGTATAA-TTCAAACT
26043942 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26043956 CACTCTTGTC
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.37
29 19 0.30
30 19 0.30
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTGTATAATTCAAACT
Found at i:26046631 original size:47 final size:46
Alignment explanation
Indices: 26046512--26046644 Score: 176
Period size: 46 Copynumber: 2.9 Consensus size: 46
26046502 ATAATCTCAC
* * * *
26046512 CCATAATGAACTCGGAACGCAACTCAATGAGCTCGGGTGTTTGTAT
1 CCATAATGAACTCGGAACGCAACTCAATGAGTTCGGATGCTTGCAT
* *
26046558 CCATAATGAACTCGGAACACAACTCAATGAGTTTGGATGCTTGCAT
1 CCATAATGAACTCGGAACGCAACTCAATGAGTTCGGATGCTTGCAT
* * *
26046604 CCATAGGTGAACTCGGAATGCAACTCAACGAGTTCGGATGC
1 CCATA-ATGAACTCGGAACGCAACTCAATGAGTTCGGATGC
26046645 CTCATAATTC
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
46 45 0.60
47 30 0.40
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (46 bp):
CCATAATGAACTCGGAACGCAACTCAATGAGTTCGGATGCTTGCAT
Found at i:26054379 original size:27 final size:27
Alignment explanation
Indices: 26054340--26054610 Score: 143
Period size: 27 Copynumber: 10.0 Consensus size: 27
26054330 TTAGAATACT
* *
26054340 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-GTAAAATTACCAAAATACCC
* *
26054368 TTAGTTTGTAAAAATACTAAAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
* **
26054395 -TCGATTTGTAAAATTACTGAAATA-CC
1 TTAG-TTTGTAAAATTACCAAAATACCC
* * *
26054421 TTCGACTTGTAAAATTACCAAAGTACTCC
1 TTAG-TTTGTAAAATTACCAAAATAC-CC
** ** * * ****
26054450 CGA-TTTACAGAATTATCGTTTTACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
* * ** *
26054476 TCAATTTACAGAATTACCAAAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
* * *
26054503 TTGGTTTATAAAATCACCAAAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
* * *
26054530 CTGGTTTGTAAAATTACTAAAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
* * *
26054557 TTTGTTTATAAAATTACCAAAATACCA
1 TTAGTTTGTAAAATTACCAAAATACCC
* * * *
26054584 ATGGTTTGAAAAATTACTAAAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
26054611 CTGTAGGGTA
Statistics
Matches: 187, Mismatches: 51, Indels: 11
0.75 0.20 0.04
Matches are distributed among these distances:
26 7 0.04
27 171 0.91
28 7 0.04
29 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACCAAAATACCC
Found at i:26054408 original size:54 final size:54
Alignment explanation
Indices: 26054344--26054610 Score: 198
Period size: 54 Copynumber: 4.9 Consensus size: 54
26054334 AATACTTTAG
*
26054344 TTTACTAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTAAAATACCCTCGA
1 TTTA-TAAAATTACCGAAATACCCTTAGTTTGTAAAATTACTAAAATACCCTCGA
* * * * * *
26054399 TTTGTAAAATTACTGAAATA-CCTTCGACTTGTAAAATTACCAAAGTACTCC-CGA
1 TTTATAAAATTACCGAAATACCCTTAG-TTTGTAAAATTACTAAAATAC-CCTCGA
* * * *** * * ** * * * *
26054453 TTTACAGAATTATCGTTTTACCCTCAATTTACAGAATTACCAAAATACCCTTGG
1 TTTATAAAATTACCGAAATACCCTTAGTTTGTAAAATTACTAAAATACCCTCGA
* * * * *
26054507 TTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTG-
1 TTTATAAAATTACCGAAATACCCTTAGTTTGTAAAATTACTAAAATACCC-TCGA
* ** * *
26054561 TTTATAAAATTACCAAAATACCAATGGTTTGAAAAATTACTAAAATACCC
1 TTTATAAAATTACCGAAATACCCTTAGTTTGTAAAATTACTAAAATACCC
26054611 CTGTAGGGTA
Statistics
Matches: 162, Mismatches: 45, Indels: 11
0.74 0.21 0.05
Matches are distributed among these distances:
53 7 0.04
54 144 0.89
55 11 0.07
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (54 bp):
TTTATAAAATTACCGAAATACCCTTAGTTTGTAAAATTACTAAAATACCCTCGA
Found at i:26054623 original size:27 final size:27
Alignment explanation
Indices: 26054593--26054654 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
26054583 AATGGTTTGA
26054593 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
26054620 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
26054647 AAAATTAC
1 AAAATTAC
26054655 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:26054623 original size:54 final size:54
Alignment explanation
Indices: 26054487--26054636 Score: 151
Period size: 54 Copynumber: 2.8 Consensus size: 54
26054477 CAATTTACAG
* ** * ** *
26054487 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCAATGGTTTGAAA
* **
26054541 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCAATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCAATGGTTTGAAA
* **
26054595 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACC
26054637 CTTGTGGGGT
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 3 0.04
54 79 0.95
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCAATGGTTTGAAA
Found at i:26054639 original size:81 final size:81
Alignment explanation
Indices: 26054487--26054639 Score: 211
Period size: 81 Copynumber: 1.9 Consensus size: 81
26054477 CAATTTACAG
** **
26054487 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCAATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
26054552 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
26054568 AATTACCAAAATACCAATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCAATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
26054631 AATACCCTT
64 AATACCCTT
26054640 GTGGGGTAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
80 2 0.03
81 60 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCAATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:26055264 original size:41 final size:41
Alignment explanation
Indices: 26055216--26055299 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
26055206 ATAAAAATTA
26055216 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
1 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
26055257 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
1 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
26055298 CT
1 CT
26055300 AAAGAGCAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (41 bp):
CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
Found at i:26055320 original size:28 final size:28
Alignment explanation
Indices: 26055287--26055383 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
26055277 GCGTAGATCA
26055287 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
26055315 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
26055343 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
26055371 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
26055384 GGGTTTAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.05
27 8 0.12
28 54 0.83
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:26058649 original size:27 final size:27
Alignment explanation
Indices: 26058610--26058925 Score: 149
Period size: 27 Copynumber: 11.7 Consensus size: 27
26058600 TTAGAATACT
* *
26058610 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-GTAAAATTACCAAAATACCC
*
26058638 TTAGTTTGTAAAA-TACTAAAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
* **
26058664 -TCGATTTGTAAAATTACTGAAATA-CC
1 TTAG-TTTGTAAAATTACCAAAATACCC
* * *
26058690 TTCGACTTGTAAAATTACCAAAGTACTCC
1 TTAG-TTTGTAAAATTACCAAAATAC-CC
** ** * **** *
26058719 CGA-TTTACAGAATTACCGTTTTACCG
1 TTAGTTTGTAAAATTACCAAAATACCC
* * ** *
26058745 TCAATTTACAGAATTACCAAAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
* * *
26058772 TTGGTTTATAAAATCACCAAAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
* * *
26058799 CTGGTTTGTAAAATTACTAAAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
* * *
26058826 TTTGTTTATAAAATTACCAAAATACCA
1 TTAGTTTGTAAAATTACCAAAATACCC
* * * *
26058853 ATGGTTTGAAAAATTACTAAAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
** **
26058880 TT-GTAGGGTAAAATTACTGAAATACCC
1 TTAGT-TTGTAAAATTACCAAAATACCC
**
26058907 TT-GTGGGGTAAAATTACCA
1 TTAGT-TTGTAAAATTACCA
26058926 TTTTGCCCCT
Statistics
Matches: 224, Mismatches: 57, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
25 2 0.01
26 26 0.12
27 187 0.83
28 7 0.03
29 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.32
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACCAAAATACCC
Found at i:26058815 original size:54 final size:54
Alignment explanation
Indices: 26058756--26058882 Score: 200
Period size: 54 Copynumber: 2.4 Consensus size: 54
26058746 CAATTTACAG
* ** *
26058756 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
* *
26058810 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCAATGGTTTGAAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
26058864 AATTACTAAAATACCCTTG
1 AATTACTAAAATACCCTTG
26058883 TAGGGTAAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
Found at i:26058841 original size:81 final size:81
Alignment explanation
Indices: 26058756--26058908 Score: 202
Period size: 81 Copynumber: 1.9 Consensus size: 81
26058746 CAATTTACAG
** **
26058756 AATTACCAAAATACCCTTGGTTT-ATAAAATCACCAAAATACCCCTGGT-TTGTAAAATTACTAA
1 AATTACCAAAATACCAATGGTTTGA-AAAATCACCAAAATA-CCCTGGTAGGGTAAAATTACTAA
26058819 AATACCCTTTGTTTATAA
64 AATACCCTTTGTTTATAA
* * * *
26058837 AATTACCAAAATACCAATGGTTTGAAAAATTACTAAAATACCCTTGTAGGGTAAAATTACTGAAA
1 AATTACCAAAATACCAATGGTTTGAAAAATCACCAAAATACCCTGGTAGGGTAAAATTACTAAAA
26058902 TACCCTT
66 TACCCTT
26058909 GTGGGGTAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 6 0.10
81 55 0.89
82 1 0.02
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCAATGGTTTGAAAAATCACCAAAATACCCTGGTAGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:26058892 original size:54 final size:54
Alignment explanation
Indices: 26058756--26058905 Score: 167
Period size: 54 Copynumber: 2.8 Consensus size: 54
26058746 CAATTTACAG
* * ** * ** *
26058756 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTTGTGGATAAAATTACCAAAATACCAATGGTTTGAAA
**
26058810 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCAATGGTTTGAAA
1 AATTACTAAAATACCCTTTGTGGATAAAATTACCAAAATACCAATGGTTTGAAA
* **
26058864 AATTACTAAAATACCC-TTGTAGGGTAAAATTACTGAAATACC
1 AATTACTAAAATACCCTTTGT-GGATAAAATTACCAAAATACC
26058906 CTTGTGGGGT
Statistics
Matches: 84, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 4 0.05
54 80 0.95
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTTGTGGATAAAATTACCAAAATACCAATGGTTTGAAA
Found at i:26059533 original size:41 final size:41
Alignment explanation
Indices: 26059485--26059568 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
26059475 ATAAAAATTA
26059485 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
1 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
26059526 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
1 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
26059567 CT
1 CT
26059569 AAAGAGCAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (41 bp):
CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
Found at i:26059589 original size:28 final size:28
Alignment explanation
Indices: 26059556--26059640 Score: 152
Period size: 28 Copynumber: 3.0 Consensus size: 28
26059546 GCGTAGATCA
26059556 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
26059584 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
26059612 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
26059640 C
1 C
26059641 AATATACCAC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.46, C:0.25, G:0.09, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:26069578 original size:33 final size:32
Alignment explanation
Indices: 26069534--26069770 Score: 114
Period size: 33 Copynumber: 7.1 Consensus size: 32
26069524 TTGCATTCGT
* *
26069534 ATGTAAAACCATAGCTAGGCTATGACATTCTG
1 ATGTAAGACCATAGCTGGGCTATGACATTCTG
** * * *
26069566 ATGATAAGACCATAATTGGGTTATGACACTATG
1 ATG-TAAGACCATAGCTGGGCTATGACATTCTG
* * * * * * * *
26069599 GTCGTAAGACCATGGTTGGACCATGGCAGTGTTTAT
1 AT-GTAAGACCATAGCTGGGCTATGACA-T-TCT-G
*
26069635 ATGTAAGACCATAGCTGGGCTATGTCATTCTG
1 ATGTAAGACCATAGCTGGGCTATGACATTCTG
* * * * *
26069667 ATGATAAGACCATAACTGGGTTATGGCAGTATG
1 ATG-TAAGACCATAGCTGGGCTATGACATTCTG
** * * * * * *
26069700 TACATAAGACCATGGTTGGACTATGGCAGTGTTTAT
1 -ATGTAAGACCATAGCTGGGCTATGACA-T-TCT-G
*
26069736 ATGTAAGACCATAGCTGGGCTATGGCATTCTG
1 ATGTAAGACCATAGCTGGGCTATGACATTCTG
26069768 ATG
1 ATG
26069771 ATAATACTAT
Statistics
Matches: 148, Mismatches: 47, Indels: 20
0.69 0.22 0.09
Matches are distributed among these distances:
32 9 0.06
33 88 0.59
34 4 0.03
35 46 0.31
36 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (32 bp):
ATGTAAGACCATAGCTGGGCTATGACATTCTG
Found at i:26069708 original size:101 final size:101
Alignment explanation
Indices: 26069533--26069798 Score: 417
Period size: 101 Copynumber: 2.6 Consensus size: 101
26069523 GTTGCATTCG
* * *
26069533 TATGTAAAACCATAGCTAGGCTATGACATTCTGATGATAAGACCATAATTGGGTTATGACACTAT
1 TATGTAAGACCATAGCTGGGCTATGACATTCTGATGATAAGACCATAATTGGGTTATGGCACTAT
*
26069598 GGTCGTAAGACCATGGTTGGACCATGGCAGTGTTTA
66 GGTCATAAGACCATGGTTGGACCATGGCAGTGTTTA
* * *
26069634 TATGTAAGACCATAGCTGGGCTATGTCATTCTGATGATAAGACCATAACTGGGTTATGGCAGTAT
1 TATGTAAGACCATAGCTGGGCTATGACATTCTGATGATAAGACCATAATTGGGTTATGGCACTAT
*
26069699 -GTACATAAGACCATGGTTGGACTATGGCAGTGTTTA
66 GGT-CATAAGACCATGGTTGGACCATGGCAGTGTTTA
* * *
26069735 TATGTAAGACCATAGCTGGGCTATGGCATTCTGATGATAATACTATAATTGGGTTATGGCACTA
1 TATGTAAGACCATAGCTGGGCTATGACATTCTGATGATAAGACCATAATTGGGTTATGGCACTA
26069799 CAAATGTAAG
Statistics
Matches: 151, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
100 2 0.01
101 149 0.99
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (101 bp):
TATGTAAGACCATAGCTGGGCTATGACATTCTGATGATAAGACCATAATTGGGTTATGGCACTAT
GGTCATAAGACCATGGTTGGACCATGGCAGTGTTTA
Found at i:26076079 original size:40 final size:40
Alignment explanation
Indices: 26076033--26076216 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
26076023 ATTGCACAAG
* * *
26076033 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
26076073 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* **
26076113 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGGAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
26076153 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
26076194 GCCTTCGGGACTTAGCCC-GATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
26076217 CATTCGAATA
Statistics
Matches: 120, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 96 0.80
41 23 0.19
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:26084148 original size:40 final size:40
Alignment explanation
Indices: 26084066--26084286 Score: 243
Period size: 40 Copynumber: 5.5 Consensus size: 40
26084056 CTCAAGTAAT
* * * *
26084066 CTTCGGGAT-TTAG-CCGGATATAATTACTTGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
26084104 CTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
26084144 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
26084184 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
26084224 CTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAATGC
*
26084265 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
26084287 CATTCGAATA
Statistics
Matches: 151, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 95 0.63
41 29 0.19
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:26086012 original size:46 final size:43
Alignment explanation
Indices: 26085873--26086005 Score: 126
Period size: 46 Copynumber: 2.9 Consensus size: 43
26085863 GCCCATAAGC
* *
26085873 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TCAGT
* * *
26085919 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCAGT
26085965 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATC
26086006 CTAGTGACAT
Statistics
Matches: 73, Mismatches: 9, Indels: 12
0.78 0.10 0.13
Matches are distributed among these distances:
44 9 0.12
45 2 0.03
46 57 0.78
48 4 0.05
49 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (43 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCAGT
Found at i:26093446 original size:93 final size:93
Alignment explanation
Indices: 26093334--26093505 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
26093324 CGCCCATAAG
* *
26093334 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
26093399 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
26093427 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
26093492 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
26093506 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:26093502 original size:46 final size:46
Alignment explanation
Indices: 26093327--26093502 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
26093317 TGTAACCCGC
* * *
26093327 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
26093373 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
26093423 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
26093466 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
26093503 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:26097077 original size:35 final size:35
Alignment explanation
Indices: 26097037--26097107 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
26097027 CTTGTTTATA
26097037 ACCTTACCACATCCTGGTCACTTAATGAACACATC
1 ACCTTACCACATCCTGGTCACTTAATGAACACATC
*
26097072 ACCTTACCTCATCCTGGTCACTTAATGAACACATC
1 ACCTTACCACATCCTGGTCACTTAATGAACACATC
26097107 A
1 A
26097108 TTCACATAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.34, G:0.08, T:0.27
Consensus pattern (35 bp):
ACCTTACCACATCCTGGTCACTTAATGAACACATC
Found at i:26098191 original size:30 final size:30
Alignment explanation
Indices: 26098157--26098217 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
26098147 TCCTTAACTC
26098157 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
26098187 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
26098217 A
1 A
26098218 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:26100594 original size:2 final size:2
Alignment explanation
Indices: 26100587--26100611 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26100577 GAGACTAGTC
26100587 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
26100612 CATGTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26101565 original size:24 final size:24
Alignment explanation
Indices: 26101536--26101583 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
26101526 CACATCCTGG
26101536 TCACTTAATGAACACATCATTCAC
1 TCACTTAATGAACACATCATTCAC
26101560 TCACTTAATGAACACATCATTCAC
1 TCACTTAATGAACACATCATTCAC
26101584 ATAACCAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.29, G:0.04, T:0.29
Consensus pattern (24 bp):
TCACTTAATGAACACATCATTCAC
Found at i:26102666 original size:30 final size:30
Alignment explanation
Indices: 26102632--26102692 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
26102622 TCCTTAACTC
26102632 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
26102662 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
26102692 A
1 A
26102693 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:26111324 original size:39 final size:39
Alignment explanation
Indices: 26111159--26111365 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
26111149 CAATTGAATG
* * * ** * *
26111159 ATATTCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * **
26111199 ATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTG-TT
*
26111239 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* *
26111279 AAATCCGGGCTAATACCCGAAGGCATT-GTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
26111318 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
26111358 ATATCCGG
1 ATATCCGG
26111366 TTGTATTCGA
Statistics
Matches: 140, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
38 1 0.01
39 38 0.27
40 95 0.68
41 6 0.04
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:26111335 original size:79 final size:80
Alignment explanation
Indices: 26111164--26111365 Score: 237
Period size: 79 Copynumber: 2.5 Consensus size: 80
26111154 GAATGATATT
* * ** * * *
26111164 CGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCATTGT
1 CGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCCATTGT
*
26111229 GCTAGTGACCACATC
66 GCAAGTGACCACATC
* * *
26111244 CGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGG-CATTGT
1 CGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCCATTGT
** *
26111308 GCAAGTCGTTC-TATC
66 GCAAGT-GACCACATC
* *
26111323 CGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 CGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
26111366 TTGTATTCGA
Statistics
Matches: 104, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
79 54 0.52
80 50 0.48
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
CGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCCATTGT
GCAAGTGACCACATC
Found at i:26119236 original size:40 final size:40
Alignment explanation
Indices: 26119177--26119369 Score: 199
Period size: 40 Copynumber: 4.8 Consensus size: 40
26119167 CAATTGAATG
* * * *
26119177 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
26119217 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
26119257 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
26119297 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* *
26119337 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
26119370 TGTGGATATC
Statistics
Matches: 128, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
39 2 0.02
40 124 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:26119315 original size:80 final size:80
Alignment explanation
Indices: 26119179--26119369 Score: 224
Period size: 80 Copynumber: 2.4 Consensus size: 80
26119169 ATTGAATGAT
* * ** * * *
26119179 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAAATCCGGGCTAAGACCCGAAGG-CAT
*
26119243 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
** *
26119259 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAAATCCGGGCTAAGACCCGAAGGCATT
** *
26119324 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
26119339 ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
26119370 TGTGGATATC
Statistics
Matches: 95, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
79 2 0.02
80 91 0.96
81 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAAATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:26122779 original size:9 final size:9
Alignment explanation
Indices: 26122765--26122790 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
26122755 AAGAGGGTTA
26122765 AATTTCATG
1 AATTTCATG
26122774 AATTTCATG
1 AATTTCATG
26122783 AATTTCAT
1 AATTTCAT
26122791 TTTCCGAGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.46
Consensus pattern (9 bp):
AATTTCATG
Found at i:26131596 original size:48 final size:48
Alignment explanation
Indices: 26131540--26131768 Score: 273
Period size: 48 Copynumber: 4.8 Consensus size: 48
26131530 CTCACACGAT
*
26131540 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCCCCAG
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCAT-CCCAG
* * * *
26131589 -AGTACCTATACCATGGCCCGAAGCCAAATCAAAGCAACTCATCTCTG
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCCCAG
* ** *
26131636 AAATACCTATACTGTGGCCCGAAGCCAAATCAAGGTAACTTATCCCCAG
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCAT-CCCAG
* * * * *
26131685 -AGTACTTATACCATGGCCCGAAGCCAAATCAAAGCAACTCATCTCTG
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCCCAG
* * *
26131732 AAATACCTATACCATGGCCTGAAGCTAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTA
26131769 TAACTCGCAC
Statistics
Matches: 149, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
47 6 0.04
48 140 0.94
49 3 0.02
ACGTcount: A:0.35, C:0.29, G:0.16, T:0.20
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCCCAG
Found at i:26131707 original size:96 final size:96
Alignment explanation
Indices: 26131543--26131768 Score: 407
Period size: 96 Copynumber: 2.4 Consensus size: 96
26131533 ACACGATAAG
26131543 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCCCCAGAGTACCTATACCATGGCCC
1 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCCCCAGAGTACCTATACCATGGCCC
26131608 GAAGCCAAATCAAAGCAACTCATCTCTGAAA
66 GAAGCCAAATCAAAGCAACTCATCTCTGAAA
** *
26131639 TACCTATACTGTGGCCCGAAGCCAAATCAAGGTAACTTATCCCCAGAGTACTTATACCATGGCCC
1 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCCCCAGAGTACCTATACCATGGCCC
26131704 GAAGCCAAATCAAAGCAACTCATCTCTGAAA
66 GAAGCCAAATCAAAGCAACTCATCTCTGAAA
* *
26131735 TACCTATACCATGGCCTGAAGCTAAATCAAGGTA
1 TACCTATACCATGGCCCGAAGCCAAATCAAGGTA
26131769 TAACTCGCAC
Statistics
Matches: 123, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 123 1.00
ACGTcount: A:0.35, C:0.29, G:0.15, T:0.20
Consensus pattern (96 bp):
TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCCCCAGAGTACCTATACCATGGCCC
GAAGCCAAATCAAAGCAACTCATCTCTGAAA
Found at i:26135493 original size:19 final size:20
Alignment explanation
Indices: 26135456--26135493 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26135446 AAACCTTGAT
* *
26135456 TTTTTTTTTACTTATTTTAG
1 TTTTTATTTACTTAATTTAG
26135476 TTTTTATTTA-TTAATTTA
1 TTTTTATTTACTTAATTTA
26135494 CTTAAATAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (20 bp):
TTTTTATTTACTTAATTTAG
Found at i:26137134 original size:35 final size:35
Alignment explanation
Indices: 26137088--26137157 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
26137078 ATGTTAGACT
26137088 GTAGAGGCCACCATGAGCACTCTCATGGTCTTGGG
1 GTAGAGGCCACCATGAGCACTCTCATGGTCTTGGG
*
26137123 GTAGAGGCCACCATGAGCGCTCTCATGGTCTTGGG
1 GTAGAGGCCACCATGAGCACTCTCATGGTCTTGGG
26137158 CTATTCGGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.19, C:0.26, G:0.33, T:0.23
Consensus pattern (35 bp):
GTAGAGGCCACCATGAGCACTCTCATGGTCTTGGG
Found at i:26137527 original size:54 final size:55
Alignment explanation
Indices: 26137430--26137695 Score: 305
Period size: 54 Copynumber: 4.9 Consensus size: 55
26137420 AGATCCCAAA
* * *
26137430 TTGTAAAATTATCGAAATACC-TCAGATTGTAAAATTACCGAAATATCCCTGA-T
1 TTGTAAAATTATCGAAATACCTTCAGATTGTAAAATTACTGAAATACCCCTCAGT
* *
26137483 TTGTAAAATTACCGAAATACCTTCAGATTGTAAAATTACTGAAATATCCC-CAGT
1 TTGTAAAATTATCGAAATACCTTCAGATTGTAAAATTACTGAAATACCCCTCAGT
* * **
26137537 TTGTAAAATTATCGAAATGCCCTT-AAATTGTAAAATTACCAAAATA-CCCTCAGT
1 TTGTAAAATTATCGAAAT-ACCTTCAGATTGTAAAATTACTGAAATACCCCTCAGT
* * * * * *
26137591 TTATAAAATTACCAAAATACCCTCAGATTGTAAAATTACTAAAATACCCC-CAAT
1 TTGTAAAATTATCGAAATACCTTCAGATTGTAAAATTACTGAAATACCCCTCAGT
*
26137645 TTGTAAAATTATCGAAATACCCTT--GTAGTGTAAAATTACTGAAATACCCCT
1 TTGTAAAATTATCGAAATA-CCTTCAG-ATTGTAAAATTACTGAAATACCCCT
26137696 GTAGGGTAAA
Statistics
Matches: 182, Mismatches: 22, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
53 28 0.15
54 144 0.79
55 10 0.05
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (55 bp):
TTGTAAAATTATCGAAATACCTTCAGATTGTAAAATTACTGAAATACCCCTCAGT
Found at i:26137568 original size:81 final size:78
Alignment explanation
Indices: 26137429--26137694 Score: 277
Period size: 81 Copynumber: 3.3 Consensus size: 78
26137419 AAGATCCCAA
* *
26137429 ATTGTAAAATTA-TCGAAATACCTCAGATTGTAAAATTACCGAAATATCCCTGATTTGTAAAATT
1 ATTGTAAAATTACT-GAAATACCCCAGATTGTAAAATTA-CGAAATA-CCCTAATTTGTAAAATT
26137493 ACCGAAATACCTTCAG
63 ACCGAAATACCTTCAG
* * *
26137509 ATTGTAAAATTACTGAAATATCCCCAGTTTGTAAAATTATCGAAATGCCCTTAAATTGTAAAATT
1 ATTGTAAAATTACTGAAATA-CCCCAGATTGTAAAATTA-CGAAATACCC-TAATTTGTAAAATT
* *
26137574 ACCAAAATACCCTCAG
63 ACCGAAATACCTTCAG
* * ** * *
26137590 TTTATAAAATTACCAAAATACCCTCAGATTGTAAAATTACTAAAATACCCCCAATTTGTAAAATT
1 ATTGTAAAATTACTGAAATACCC-CAGATTGTAAAATTAC-GAAATA-CCCTAATTTGTAAAATT
*
26137655 ATCGAAATACCCTT--G
63 ACCGAAATA-CCTTCAG
*
26137670 TAGTGTAAAATTACTGAAATACCCC
1 -ATTGTAAAATTACTGAAATACCCC
26137695 TGTAGGGTAA
Statistics
Matches: 153, Mismatches: 25, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
80 27 0.18
81 120 0.78
82 6 0.04
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (78 bp):
ATTGTAAAATTACTGAAATACCCCAGATTGTAAAATTACGAAATACCCTAATTTGTAAAATTACC
GAAATACCTTCAG
Found at i:26137699 original size:27 final size:26
Alignment explanation
Indices: 26137424--26137694 Score: 217
Period size: 27 Copynumber: 10.1 Consensus size: 26
26137414 TCGTTAAGAT
*
26137424 CCCAAATTGTAAAATTA-TCGAAATAC
1 CCCAGATTGTAAAATTACT-GAAATAC
* * *
26137450 CTCAGATTGTAAAATTACCGAAATAT
1 CCCAGATTGTAAAATTACTGAAATAC
* *
26137476 CCCTGATTTGTAAAATTACCGAAATAC
1 CCCAGA-TTGTAAAATTACTGAAATAC
*
26137503 CTTCAGATTGTAAAATTACTGAAATATC
1 C-CCAGATTGTAAAATTACTGAAATA-C
* *
26137531 CCCAGTTTGTAAAATTA-TCGAAATGC
1 CCCAGATTGTAAAATTACT-GAAATAC
* * **
26137557 CCTTAAATTGTAAAATTACCAAAATAC
1 CC-CAGATTGTAAAATTACTGAAATAC
* * **
26137584 CCTCAGTTTATAAAATTACCAAAATAC
1 CC-CAGATTGTAAAATTACTGAAATAC
*
26137611 CCTCAGATTGTAAAATTACTAAAATACC
1 CC-CAGATTGTAAAATTACTGAAATA-C
26137639 CCCA-ATTTGTAAAATTA-TCGAAATAC
1 CCCAGA-TTGTAAAATTACT-GAAATAC
** *
26137665 CCTTGTAGTGTAAAATTACTGAAATAC
1 CCCAG-ATTGTAAAATTACTGAAATAC
26137692 CCC
1 CCC
26137695 TGTAGGGTAA
Statistics
Matches: 201, Mismatches: 31, Indels: 25
0.78 0.12 0.10
Matches are distributed among these distances:
26 34 0.17
27 157 0.78
28 10 0.05
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (26 bp):
CCCAGATTGTAAAATTACTGAAATAC
Found at i:26137704 original size:27 final size:27
Alignment explanation
Indices: 26137647--26137707 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
26137637 CCCCCAATTT
* *
26137647 GTAAAATTATCGAAATACCCTTGTAGT
1 GTAAAATTATCGAAATACCCCTGTAGG
26137674 GTAAAATTA-CTGAAATACCCCTGTAGG
1 GTAAAATTATC-GAAATACCCCTGTAGG
26137701 GTAAAAT
1 GTAAAAT
26137708 GACTATTTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 1 0.03
27 30 0.97
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (27 bp):
GTAAAATTATCGAAATACCCCTGTAGG
Found at i:26138241 original size:32 final size:32
Alignment explanation
Indices: 26138199--26138261 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
26138189 CCCATGGTTG
*
26138199 TGTGCCGATCATATTACAGCTACTAATGGCTT
1 TGTGCCGATCAAATTACAGCTACTAATGGCTT
* * *
26138231 TGTGCTGATCAAATTACCGCTACTGATGGCT
1 TGTGCCGATCAAATTACAGCTACTAATGGCT
26138262 GTAAGCCGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (32 bp):
TGTGCCGATCAAATTACAGCTACTAATGGCTT
Found at i:26141782 original size:28 final size:29
Alignment explanation
Indices: 26141750--26141848 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
26141740 ATAATAAGCC
*
26141750 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
26141778 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
26141806 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
26141835 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26141849 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:26149840 original size:28 final size:28
Alignment explanation
Indices: 26149769--26149842 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 28
26149759 ATAATAAGCC
* *
26149769 CGCACACTTAGTGCT-TAATAGTCGAACT
1 CGCACACTTAGTGCTAT-ATAATCAAACT
26149797 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
26149825 CGCACACTTAGTGCTATA
1 CGCACACTTAGTGCTATA
26149843 CAATTTGAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
28 42 0.98
29 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26153023 original size:29 final size:29
Alignment explanation
Indices: 26152960--26153067 Score: 121
Period size: 29 Copynumber: 3.8 Consensus size: 29
26152950 TTCACATACC
* * *
26152960 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* * *
26152988 T-TCATATAGCCTATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
26153017 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
26153046 TTTATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
26153068 GTCACATTTA
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
27 1 0.02
28 15 0.23
29 49 0.74
30 1 0.02
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:26153027 original size:57 final size:58
Alignment explanation
Indices: 26152957--26153067 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 58
26152947 AATTTCACAT
* * *
26152957 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATAGCCTATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATAGCCCATTAGGCCCAAATC
* * * *
26153014 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATAGCCCATTAGGCCCA
26153068 GTCACATTTA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATAGCCCATTAGGCCCAAATC
Found at i:26153312 original size:16 final size:16
Alignment explanation
Indices: 26153291--26153325 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
26153281 GTAGCCAAAC
*
26153291 TTTCGACTTTTCAGCT
1 TTTCGACATTTCAGCT
*
26153307 TTTCGACATTTCGGCT
1 TTTCGACATTTCAGCT
26153323 TTT
1 TTT
26153326 GCCGATACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.11, C:0.23, G:0.14, T:0.51
Consensus pattern (16 bp):
TTTCGACATTTCAGCT
Found at i:26155173 original size:27 final size:27
Alignment explanation
Indices: 26154979--26155176 Score: 163
Period size: 27 Copynumber: 7.3 Consensus size: 27
26154969 GACCCCGGGT
* *
26154979 TTGTAAAATTATCGAAATA-CCTTCATA
1 TTGTAAAATTACCGAAATACCCTT-GTA
* *
26155006 TTGTAAAATTAACGAAATTCCCTTAGT-
1 TTGTAAAATTACCGAAATACCCTT-GTA
* *
26155033 TTGTAAAATTACCGAAATACACTCAG-A
1 TTGTAAAATTACCGAAATACCCT-TGTA
*
26155060 TTGTAAAATTACCGAAATACCACTAGT-
1 TTGTAAAATTACCGAAATACC-CTTGTA
* * *
26155087 TTGAAAAATTATCGAAATACCCTTGGA
1 TTGTAAAATTACCGAAATACCCTTGTA
* ** * *
26155114 TTTTAAAATTACAAAAATACCCCT-AA
1 TTGTAAAATTACCGAAATACCCTTGTA
26155140 TTTGTAAAATTACCGAAATACCCTTGTA
1 -TTGTAAAATTACCGAAATACCCTTGTA
**
26155168 GGGTAAAAT
1 TTGTAAAAT
26155177 GACTGTTTTG
Statistics
Matches: 136, Mismatches: 27, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
26 4 0.03
27 124 0.91
28 8 0.06
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACCGAAATACCCTTGTA
Found at i:26155175 original size:54 final size:54
Alignment explanation
Indices: 26154977--26155176 Score: 208
Period size: 54 Copynumber: 3.7 Consensus size: 54
26154967 AAGACCCCGG
* * * *
26154977 GTTTGTAAAATTATCGAAATA-CCTTCATATTGTAAAATTA-ACGAAATTCCCTTA
1 GTTTGTAAAATTACCGAAATACCCTT-GTATTGTAAAATTACA-GAAATACCCCTA
* * * *
26155031 GTTTGTAAAATTACCGAAATACACTCAG-ATTGTAAAATTACCGAAATACCACTA
1 GTTTGTAAAATTACCGAAATACCCT-TGTATTGTAAAATTACAGAAATACCCCTA
* * * * *
26155085 GTTTGAAAAATTATCGAAATACCCTTGGATTTTAAAATTACAAAAATACCCCTA
1 GTTTGTAAAATTACCGAAATACCCTTGTATTGTAAAATTACAGAAATACCCCTA
* **
26155139 ATTTGTAAAATTACCGAAATACCCTTGTAGGGTAAAAT
1 GTTTGTAAAATTACCGAAATACCCTTGTATTGTAAAAT
26155177 GACTGTTTTG
Statistics
Matches: 119, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
53 1 0.01
54 116 0.97
55 2 0.02
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (54 bp):
GTTTGTAAAATTACCGAAATACCCTTGTATTGTAAAATTACAGAAATACCCCTA
Found at i:26155176 original size:81 final size:82
Alignment explanation
Indices: 26154978--26155176 Score: 212
Period size: 81 Copynumber: 2.5 Consensus size: 82
26154968 AGACCCCGGG
* * *
26154978 TTTGTAAAATTATCGAAATA-CCTTCATATTGTAAAATTAACGAAATTCCCTTAGTTTGTAAAAT
1 TTTGTAAAATTACCGAAATACCCTT-GTATTGTAAAATTAACGAAATACCCTTAGTTTGTAAAAT
**
26155042 TACCGAAATACACTCAGA
65 TACAAAAATACACTCAGA
* * * *
26155060 -TTGTAAAATTACCGAAATACCACTAGT-TTGAAAAATTATCGAAATACCCTTGGATTT-TAAAA
1 TTTGTAAAATTACCGAAATACC-CTTGTATTGTAAAATTAACGAAATACCCTTAG-TTTGTAAAA
*
26155122 TTACAAAAATAC-CCCTA-A
64 TTACAAAAATACACTC-AGA
**
26155140 TTTGTAAAATTACCGAAATACCCTTGTAGGGTAAAAT
1 TTTGTAAAATTACCGAAATACCCTTGTATTGTAAAAT
26155177 GACTGTTTTG
Statistics
Matches: 97, Mismatches: 14, Indels: 13
0.78 0.11 0.10
Matches are distributed among these distances:
80 7 0.07
81 83 0.86
82 5 0.05
83 2 0.02
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (82 bp):
TTTGTAAAATTACCGAAATACCCTTGTATTGTAAAATTAACGAAATACCCTTAGTTTGTAAAATT
ACAAAAATACACTCAGA
Found at i:26155705 original size:32 final size:32
Alignment explanation
Indices: 26155662--26155733 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
26155652 ATATTTACCC
* *
26155662 ATGGCTGTGTGCCGATCATATTATAGCTACTG
1 ATGGCTGTGTGCCGATCAAATTACAGCTACTG
* **
26155694 ATGGCTTTGTGCCGATCAAATTACCTCTACTG
1 ATGGCTGTGTGCCGATCAAATTACAGCTACTG
26155726 ATGGCTGT
1 ATGGCTGT
26155734 AAGCTGTGTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.35
Consensus pattern (32 bp):
ATGGCTGTGTGCCGATCAAATTACAGCTACTG
Found at i:26155996 original size:28 final size:28
Alignment explanation
Indices: 26155945--26155998 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
26155935 CTGATTCTGA
* * *
26155945 TACTGTATTGGGCTTAGACGCACACTGT
1 TACTATATTGGGCTAAGACCCACACTGT
*
26155973 TACTATATTGGGCTAAGGCCCACACT
1 TACTATATTGGGCTAAGACCCACACT
26155999 ATGCTATTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (28 bp):
TACTATATTGGGCTAAGACCCACACTGT
Found at i:26160458 original size:17 final size:17
Alignment explanation
Indices: 26160436--26160469 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26160426 TCTCTCGTAA
26160436 TGCCTCATCAAATCTCC
1 TGCCTCATCAAATCTCC
*
26160453 TGCCTCATCAGATCTCC
1 TGCCTCATCAAATCTCC
26160470 ATCCTTTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.41, G:0.09, T:0.29
Consensus pattern (17 bp):
TGCCTCATCAAATCTCC
Found at i:26163695 original size:40 final size:40
Alignment explanation
Indices: 26163650--26163817 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
26163640 CGGAATATAA
26163650 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
26163690 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
26163730 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
26163770 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
26163810 CCGGATAT
1 CCGGATAT
26163818 CATTCAATTT
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:26163800 original size:80 final size:80
Alignment explanation
Indices: 26163666--26163815 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
26163656 ATAACCACGT
* *
26163666 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
26163731 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
26163746 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
26163809 CCCGGAT
64 CCCGGAT
26163816 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:26171653 original size:40 final size:40
Alignment explanation
Indices: 26171608--26171735 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 40
26171598 CGGAATATAA
26171608 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
26171648 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
26171688 CCGGATGTAGCCACTAGCACAATTGCATTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
26171728 CCGGATAT
1 CCGGATAT
26171736 GATTTCCAGC
Statistics
Matches: 72, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:26184260 original size:43 final size:42
Alignment explanation
Indices: 26184213--26184304 Score: 105
Period size: 43 Copynumber: 2.2 Consensus size: 42
26184203 TGCCAACATT
*
26184213 CCAGACAACGCCTTACATGTAACCAAACATCGATGCC-ACTATC
1 CCAGACAACGCCTTACATGAAACCAAACA-CGATGCCGA-TATC
* * * * *
26184256 CCAGACAAGGTCTTACATGAAATCAAATACGATGCCGATGTC
1 CCAGACAACGCCTTACATGAAACCAAACACGATGCCGATATC
26184298 CCAGACA
1 CCAGACA
26184305 TGGTCTTACA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 17 0.40
43 25 0.60
ACGTcount: A:0.36, C:0.30, G:0.15, T:0.18
Consensus pattern (42 bp):
CCAGACAACGCCTTACATGAAACCAAACACGATGCCGATATC
Found at i:26184302 original size:42 final size:43
Alignment explanation
Indices: 26184213--26184314 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
26184203 TGCCAACATT
* * *
26184213 CCAGACAACGCCTTACATGTAACCAAACATCGATGCCACTATC
1 CCAGACAAGGTCTTACATGAAACCAAACATCGATGCCACTATC
* * *
26184256 CCAGACAAGGTCTTACATGAAATCAAATA-CGATGCCGA-TGTC
1 CCAGACAAGGTCTTACATGAAACCAAACATCGATGCC-ACTATC
*
26184298 CCAGACATGGTCTTACA
1 CCAGACAAGGTCTTACA
26184315 CGTAAAACAG
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 26 0.51
43 25 0.49
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (43 bp):
CCAGACAAGGTCTTACATGAAACCAAACATCGATGCCACTATC
Found at i:26187940 original size:97 final size:98
Alignment explanation
Indices: 26187750--26188056 Score: 361
Period size: 97 Copynumber: 3.1 Consensus size: 98
26187740 CATGTCTCGG
* *
26187750 ACATTGTCTTACACTAGCTC-T-CATACATCGGTGCCGATGCCATGTCCCAGACATGGTCTTACA
1 ACATGGTCTTACACTAGCTCGTATATAC-T-GGTGCCGATGCCATGTCCCAGACATGGTCTTACA
* * * *
26187813 CTGACACATATAACAATGGCGATGCTATGTTCCAA
64 CTGACTCACATAACAATGCCGATGCCATGTTCCAA
26187848 ACATGGTCTTACACTAGCTCGTATATACTGGTGCCGATGCCATGT-CCAGACATGGTCTTACACT
1 ACATGGTCTTACACTAGCTCGTATATACTGGTGCCGATGCCATGTCCCAGACATGGTCTTACACT
*
26187912 GGCTCACATAACAATGCCGATGCCATGTTCCAA
66 GACTCACATAACAATGCCGATGCCATGTTCCAA
* * * * * * *
26187945 A-ATAGTCTTACACTGGATCGCATATACTGATGCCGATGCCATGTCCCAGACATAGTCTTACATT
1 ACATGGTCTTACACTAGCTCGTATATACTGGTGCCGATGCCATGTCCCAGACATGGTCTTACACT
* *
26188009 GACACATATCGGCATAACAATGCCGATGCCATGCTCCAA
66 G--AC---TC-ACATAACAATGCCGATGCCATGTTCCAA
*
26188048 ACACGGTCT
1 ACATGGTCT
26188057 CTTCCATTAA
Statistics
Matches: 180, Mismatches: 19, Indels: 14
0.85 0.09 0.07
Matches are distributed among these distances:
96 38 0.21
97 66 0.37
98 35 0.19
99 3 0.02
100 4 0.02
102 2 0.01
103 27 0.15
104 5 0.03
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (98 bp):
ACATGGTCTTACACTAGCTCGTATATACTGGTGCCGATGCCATGTCCCAGACATGGTCTTACACT
GACTCACATAACAATGCCGATGCCATGTTCCAA
Found at i:26189078 original size:20 final size:19
Alignment explanation
Indices: 26189042--26189092 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
26189032 AAGTGCTATT
*
26189042 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
26189061 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
26189081 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
26189093 GTTACTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:26195517 original size:20 final size:19
Alignment explanation
Indices: 26195481--26195531 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
26195471 AAGTGCTATT
*
26195481 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
26195500 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
26195520 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
26195532 GTTACTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:26196282 original size:48 final size:48
Alignment explanation
Indices: 26196179--26196497 Score: 159
Period size: 48 Copynumber: 6.8 Consensus size: 48
26196169 TGATATGTGT
*
26196179 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT---ATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG---CATTGAGAAGAGA
* *
26196225 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAAGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAAGAGA
* * * * * *
26196273 GCTAGTGTAAGACC-TGTCTAGGACATGGCGTCAGC-TT--GATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAAGAGA
* * ** *
26196317 G-TCAGTGTAAGACC-TGTCTAGGACATGGCATCGACACCGATAAATGAGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GAA-GAGA
** * * * *
26196366 GCTAGTGTAAGACC-TGTC-GGGACACAGCATCGGCCTCGATATATGAAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA-A-GAGA
* * * * * **
26196414 GTTAGTGTAATACCTAT-T-TGGGACATGGCATCGACTTTGATG-TGCTA
1 GCTAGTGTAAGACC-ATGTCTGGGACATGGCATCGGCATTGA-GAAGAGA
* * *
26196461 GC-AGTTTAAGACCATGTCTAGGACATGGCCTCGGCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
26196498 CTTACCCTAT
Statistics
Matches: 208, Mismatches: 46, Indels: 37
0.71 0.16 0.13
Matches are distributed among these distances:
43 1 0.00
44 34 0.16
45 6 0.03
46 22 0.11
47 51 0.25
48 57 0.27
49 35 0.17
50 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAAGAGA
Found at i:26197510 original size:18 final size:18
Alignment explanation
Indices: 26197487--26197521 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26197477 TAGAATTACA
26197487 TTGAGATCATGTTGTAAT
1 TTGAGATCATGTTGTAAT
*
26197505 TTGAGATCCTGTTGTAA
1 TTGAGATCATGTTGTAA
26197522 GAATTGGTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.09, G:0.23, T:0.43
Consensus pattern (18 bp):
TTGAGATCATGTTGTAAT
Found at i:26212388 original size:46 final size:47
Alignment explanation
Indices: 26212330--26212468 Score: 144
Period size: 46 Copynumber: 3.0 Consensus size: 47
26212320 ATTTAGACAT
*
26212330 CCGAGCTCGTTGAGTTGAGTTCAAGTTCACTTATGGATGCGAATGC-
1 CCGAACTCGTTGAGTTGAGTTCAAGTTCACTTATGGATGCGAATGCA
* * *
26212376 CCGAACTCGTTGAGTTGAGTCCAAGTTC-CTGA--GATG-TAACTAGGCA
1 CCGAACTCGTTGAGTTGAGTTCAAGTTCACTTATGGATGCGAA-T--GCA
* **
26212422 TCCGAACTCATTGAGTTGAGTTTGAGTTCACTTATGGATGCGAATGC
1 -CCGAACTCGTTGAGTTGAGTTCAAGTTCACTTATGGATGCGAATGC
26212469 TCGTGTAACA
Statistics
Matches: 74, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 5 0.07
46 26 0.35
47 24 0.32
48 5 0.07
50 5 0.07
51 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (47 bp):
CCGAACTCGTTGAGTTGAGTTCAAGTTCACTTATGGATGCGAATGCA
Done.