Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 94 of 438
Found at i:26213957 original size:26 final size:27
Alignment explanation
Indices: 26213928--26213981 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
26213918 TCACACAAGT
*
26213928 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
26213954 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
26213981 T
1 T
26213982 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:26214044 original size:27 final size:27
Alignment explanation
Indices: 26213984--26214061 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
26213974 GGCAAAATGG
* * * *
26213984 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
26214011 TATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
** *
26214038 TAATTCTGTCCTACAGGGGTATTT
1 TAATTCTACCCTACAAGGGTATTT
26214062 ACCCTACAGG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:26214100 original size:44 final size:44
Alignment explanation
Indices: 26214017--26214105 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
26214007 TCGGTATTTC
* *
26214017 TACCCTACAAGGGTATTTCGATAATTCTGTCCTACAGGGGTATT
1 TACCCTACAAGGGTATTTCAATAATTCTCTCCTACAGGGGTATT
* **
26214061 TACCCTACAGGGGTATTTCAATAATTCTACT-CTTTAGGGGTATT
1 TACCCTACAAGGGTATTTCAATAATTCT-CTCCTACAGGGGTATT
26214105 T
1 T
26214106 CGGTAATTCT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 38 0.97
45 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (44 bp):
TACCCTACAAGGGTATTTCAATAATTCTCTCCTACAGGGGTATT
Found at i:26214112 original size:27 final size:27
Alignment explanation
Indices: 26214069--26214171 Score: 154
Period size: 27 Copynumber: 3.8 Consensus size: 27
26214059 TTTACCCTAC
*
26214069 AGGGGTATTTCAATAATTCTACTCTT-T
1 AGGGGTATTTCGATAATTCTAC-CTTAT
*
26214096 AGGGGTATTTCGGTAATTCTACCTTAT
1 AGGGGTATTTCGATAATTCTACCTTAT
* *
26214123 AGGGGTATTTCGGTAATTCTACCTTAC
1 AGGGGTATTTCGATAATTCTACCTTAT
26214150 AGGGGTATTTCGATAATTCTAC
1 AGGGGTATTTCGATAATTCTAC
26214172 AACTTATCCA
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
26 3 0.04
27 68 0.96
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTCGATAATTCTACCTTAT
Found at i:26219259 original size:71 final size:71
Alignment explanation
Indices: 26219175--26219338 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
26219165 CGATTTGTCT
26219175 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
26219240 CTTTCA
66 CTTTCA
* *
26219246 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
26219311 CTTTCA
66 CTTTCA
26219317 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
26219339 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:26219376 original size:71 final size:70
Alignment explanation
Indices: 26219175--26219372 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
26219165 CGATTTGTCT
* * * * *
26219175 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
26219240 CTTTCA
65 CTTTCA
* * * *
26219246 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
26219311 CTTTCA
65 CTTTCA
* *
26219317 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
26219373 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:26223898 original size:27 final size:27
Alignment explanation
Indices: 26223865--26224011 Score: 190
Period size: 27 Copynumber: 5.5 Consensus size: 27
26223855 TCAGAAGTAC
* *
26223865 TTCGGTAATTCTACCCTACAAGAGTAT
1 TTCGGTAATTCTACCCTACAGGGGTAT
*
26223892 TTCGGTAATTCTATCCTACAGGGGTAT
1 TTCGGTAATTCTACCCTACAGGGGTAT
26223919 TTCGGTAATTCTACCCTACA-GGG-AT
1 TTCGGTAATTCTACCCTACAGGGGTAT
*** *
26223944 TTTAATAATTCTACCTTACAGGGGTAT
1 TTCGGTAATTCTACCCTACAGGGGTAT
* * *
26223971 TTTGGTAATTCTACCTTATAGGGGTAT
1 TTCGGTAATTCTACCCTACAGGGGTAT
26223998 TTCGGTAATTCTAC
1 TTCGGTAATTCTAC
26224012 AACTTATCCA
Statistics
Matches: 106, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
25 18 0.17
26 6 0.06
27 82 0.77
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.38
Consensus pattern (27 bp):
TTCGGTAATTCTACCCTACAGGGGTAT
Found at i:26223971 original size:52 final size:54
Alignment explanation
Indices: 26223865--26223985 Score: 167
Period size: 52 Copynumber: 2.3 Consensus size: 54
26223855 TCAGAAGTAC
* **
26223865 TTCGGTAATTCTACCCTACAAGAGTATTTCGGTAATTCTATCCTACAGGGGTAT
1 TTCGGTAATTCTACCCTACAAGAGGATTTCAATAATTCTATCCTACAGGGGTAT
*
26223919 TTCGGTAATTCTACCCTAC-AG-GGATTTTAATAATTCTA-CCTTACAGGGGTAT
1 TTCGGTAATTCTACCCTACAAGAGGATTTCAATAATTCTATCC-TACAGGGGTAT
*
26223971 TTTGGTAATTCTACC
1 TTCGGTAATTCTACC
26223986 TTATAGGGGT
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
51 2 0.03
52 38 0.62
53 2 0.03
54 19 0.31
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (54 bp):
TTCGGTAATTCTACCCTACAAGAGGATTTCAATAATTCTATCCTACAGGGGTAT
Found at i:26226185 original size:39 final size:39
Alignment explanation
Indices: 26226131--26226274 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
26226121 TAATGTTCGA
26226131 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
26226170 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
26226209 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
26226248 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
26226275 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:26226221 original size:78 final size:79
Alignment explanation
Indices: 26226132--26226313 Score: 267
Period size: 78 Copynumber: 2.3 Consensus size: 79
26226122 AATGTTCGAG
26226132 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
26226196 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
26226210 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
26226275 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
26226289 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
26226314 TGTTTGAACG
Statistics
Matches: 93, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
78 53 0.57
79 32 0.34
80 8 0.09
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:26240120 original size:15 final size:15
Alignment explanation
Indices: 26240100--26240131 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
26240090 ACATACACTT
26240100 TCAAAATAAACTATC
1 TCAAAATAAACTATC
26240115 TCAAAATAAACTATC
1 TCAAAATAAACTATC
26240130 TC
1 TC
26240132 CAAGGCTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (15 bp):
TCAAAATAAACTATC
Found at i:26241134 original size:37 final size:37
Alignment explanation
Indices: 26241084--26241307 Score: 385
Period size: 37 Copynumber: 6.1 Consensus size: 37
26241074 CTTTAGCTTA
* * * *
26241084 GACAAAATCTCCACACGAAGTTATCGGGTCTTACACG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
26241121 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
26241158 GACATAATCTTCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
26241195 GACATAATCTCCACACGTAGTCATCGGGTCTTAACCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
26241232 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
26241269 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
26241306 GA
1 GA
26241308 ATATATTTCC
Statistics
Matches: 179, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 179 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:26241508 original size:48 final size:51
Alignment explanation
Indices: 26241454--26241592 Score: 203
Period size: 48 Copynumber: 2.8 Consensus size: 51
26241444 GCACATCGCC
* *
26241454 TACATATTTCACACTATCCATTCGACTTTACCACATATACATAT-C-T-CA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCCATACA
*
26241502 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCCCATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT-CCATACA
* *
26241554 TATATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
26241593 TGCATGTTCA
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
48 42 0.51
50 1 0.01
51 1 0.01
52 38 0.46
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.35
Consensus pattern (51 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCCATACA
Found at i:26241614 original size:47 final size:47
Alignment explanation
Indices: 26241562--26241755 Score: 300
Period size: 47 Copynumber: 4.1 Consensus size: 47
26241552 TATATATATT
* * * *
26241562 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
26241609 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
26241656 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCA-AGTTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA-TTCA
**
26241703 TCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
26241750 TCACAT
1 TCACAT
26241756 AAAATCCTAA
Statistics
Matches: 135, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
46 1 0.01
47 133 0.99
48 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:26241634 original size:22 final size:22
Alignment explanation
Indices: 26241608--26241730 Score: 60
Period size: 22 Copynumber: 5.3 Consensus size: 22
26241598 GTTCATATTC
26241608 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
26241630 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
26241654 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* *
26241677 ATCACATATATG-CATGTTCAAG--TT
1 ATCACAT-T-GGCCA--TTC-GGCCTT
26241701 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
26241724 ATCACAT
1 ATCACAT
26241731 ATATGCACAT
Statistics
Matches: 75, Mismatches: 8, Indels: 36
0.63 0.07 0.30
Matches are distributed among these distances:
21 1 0.01
22 22 0.29
23 18 0.24
24 18 0.24
25 15 0.20
26 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:26246090 original size:40 final size:40
Alignment explanation
Indices: 26245963--26246092 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
26245953 ATGCTGGAAA
* *
26245963 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
26246003 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
26246043 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
26246083 TTATATCCGG
1 TTATATCCGG
26246093 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:26249085 original size:40 final size:40
Alignment explanation
Indices: 26249028--26249232 Score: 374
Period size: 40 Copynumber: 5.1 Consensus size: 40
26249018 CGAATACACG
* * *
26249028 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
26249068 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
26249108 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
26249148 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
26249188 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
26249228 TCACT
1 TCACT
26249233 CTCAATTCTC
Statistics
Matches: 160, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 160 1.00
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:26250545 original size:37 final size:37
Alignment explanation
Indices: 26250495--26250681 Score: 320
Period size: 37 Copynumber: 5.1 Consensus size: 37
26250485 CTTTAGCTCA
* * *
26250495 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
26250532 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
26250569 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
26250606 GACATAGTCTCCACACGTAGTCATCGGGACTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
26250643 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
26250680 GA
1 GA
26250682 ATATATTTCC
Statistics
Matches: 143, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 143 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:26250954 original size:50 final size:48
Alignment explanation
Indices: 26250828--26250964 Score: 211
Period size: 48 Copynumber: 2.8 Consensus size: 48
26250818 GCACATCGCC
* *
26250828 TACATATTTCACACTATCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCCCA
*
26250876 TACATATTTCACACTAGTCATTCGGCTTTACCACATATACATATCCCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCCC--A
* *
26250926 TATATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
26250965 TGCATGTTCA
Statistics
Matches: 81, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
48 44 0.54
50 37 0.46
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCCCA
Found at i:26251013 original size:47 final size:47
Alignment explanation
Indices: 26250934--26251174 Score: 376
Period size: 47 Copynumber: 5.1 Consensus size: 47
26250924 TATATATATT
* * * *
26250934 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
26250981 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
26251028 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTTA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
26251075 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCA-AGTTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA-TTCA
**
26251122 TCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
26251169 TCACAT
1 TCACAT
26251175 AAAATCATAA
Statistics
Matches: 180, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.01
47 178 0.99
48 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:26261859 original size:40 final size:39
Alignment explanation
Indices: 26261720--26261873 Score: 191
Period size: 39 Copynumber: 3.9 Consensus size: 39
26261710 TGTGAATGAA
* *
26261720 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
26261759 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
26261798 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
26261838 TGTGCGGGTTACCATAACCGGGCTACGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
26261874 TGTTTTGAAC
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 60 0.60
40 40 0.40
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26261859 original size:79 final size:79
Alignment explanation
Indices: 26261720--26261873 Score: 211
Period size: 79 Copynumber: 1.9 Consensus size: 79
26261710 TGTGAATGAA
** *
26261720 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
26261785 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * * *
26261798 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTA
*
26261863 CGTCCCGAAGG
65 AGTCCCGAAGG
26261874 TGTTTTGAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 25 0.38
79 32 0.49
80 8 0.12
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:26269774 original size:40 final size:39
Alignment explanation
Indices: 26269635--26269788 Score: 191
Period size: 39 Copynumber: 3.9 Consensus size: 39
26269625 TGTGAATGAA
* *
26269635 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
26269674 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
26269713 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
26269753 TGTGCGGGTTACCATAACCGGGCTACGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
26269789 TGTTTTGAAC
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 60 0.60
40 40 0.40
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26269774 original size:79 final size:79
Alignment explanation
Indices: 26269635--26269788 Score: 211
Period size: 79 Copynumber: 1.9 Consensus size: 79
26269625 TGTGAATGAA
** *
26269635 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
26269700 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * * *
26269713 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTA
*
26269778 CGTCCCGAAGG
65 AGTCCCGAAGG
26269789 TGTTTTGAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 25 0.38
79 32 0.49
80 8 0.12
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:26277004 original size:34 final size:34
Alignment explanation
Indices: 26276961--26277028 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
26276951 ATGATATGTT
26276961 TTGTGTTAATATTTTAGCCATGAGATTTGTCTTA
1 TTGTGTTAATATTTTAGCCATGAGATTTGTCTTA
26276995 TTGTGTTAATATTTTAGCCATGAGATTTGTCTTA
1 TTGTGTTAATATTTTAGCCATGAGATTTGTCTTA
26277029 CTTTTGGTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.24, C:0.09, G:0.18, T:0.50
Consensus pattern (34 bp):
TTGTGTTAATATTTTAGCCATGAGATTTGTCTTA
Found at i:26278870 original size:29 final size:29
Alignment explanation
Indices: 26278837--26278893 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
26278827 ACATGTATGC
26278837 GGCCCA-CTAGGCCCAAATCACATTTATAT
1 GGCCCATC-AGGCCCAAATCACATTTATAT
*
26278866 GGCCCATCAGGCCCAATTCACATTTATA
1 GGCCCATCAGGCCCAAATCACATTTATA
26278894 GTCATGCTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 25 0.96
30 1 0.04
ACGTcount: A:0.30, C:0.32, G:0.14, T:0.25
Consensus pattern (29 bp):
GGCCCATCAGGCCCAAATCACATTTATAT
Found at i:26279131 original size:16 final size:16
Alignment explanation
Indices: 26279112--26279148 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
26279102 AAACTTTCGC
*
26279112 CTTTTTGGCATTTCAG
1 CTTTTCGGCATTTCAG
*
26279128 CTTTTCGGCATTTCGG
1 CTTTTCGGCATTTCAG
26279144 CTTTT
1 CTTTT
26279149 GCTGATCTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.08, C:0.22, G:0.19, T:0.51
Consensus pattern (16 bp):
CTTTTCGGCATTTCAG
Found at i:26282844 original size:29 final size:29
Alignment explanation
Indices: 26282758--26282847 Score: 103
Period size: 29 Copynumber: 3.1 Consensus size: 29
26282748 CACATACCTG
26282758 TATATGGCCCATTAGGCCCAATT-ATATT
1 TATATGGCCCATTAGGCCCAATTCATATT
* * *
26282786 TATACGACCCATTAAGCCCGAA-TCATATT
1 TATATGGCCCATTAGGCCC-AATTCATATT
* * *
26282815 TATATGGCCCATCAGGTCCAATTCACATT
1 TATATGGCCCATTAGGCCCAATTCATATT
26282844 TATA
1 TATA
26282848 GTCATGCTCA
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
28 19 0.38
29 31 0.62
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.32
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAATTCATATT
Found at i:26283085 original size:16 final size:16
Alignment explanation
Indices: 26283066--26283102 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
26283056 AAACTTTTAG
26283066 CTTTTCAACATTTCGA
1 CTTTTCAACATTTCGA
26283082 CTTTTCAACATTTCGA
1 CTTTTCAACATTTCGA
26283098 CTTTT
1 CTTTT
26283103 GCCGATCTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.05, T:0.49
Consensus pattern (16 bp):
CTTTTCAACATTTCGA
Found at i:26296716 original size:71 final size:67
Alignment explanation
Indices: 26296639--26296780 Score: 185
Period size: 67 Copynumber: 2.1 Consensus size: 67
26296629 TCACCAGATA
* *
26296639 CAGATATTATGGCAAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTATGACAAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGA
26296704 GGCTGC
62 GGCTGC
* * * * *
26296710 CAGATATTGTGACAAAGTCACCAGAACAGATATATGTGGTGAGGCCACTAGATTGCAGCGAGGCT
1 CAGATATTATGACAAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
26296775 GC
66 GC
26296777 CAGA
1 CAGA
26296781 ACGCTTCCTT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
67 39 0.61
71 25 0.39
ACGTcount: A:0.32, C:0.21, G:0.27, T:0.19
Consensus pattern (67 bp):
CAGATATTATGACAAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:26297464 original size:27 final size:27
Alignment explanation
Indices: 26297414--26297612 Score: 238
Period size: 27 Copynumber: 7.4 Consensus size: 27
26297404 GAGGCAAAAT
* * ** * *
26297414 GGTAATTTTACCCCACAAAAGTATCTA
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
26297441 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
26297468 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
26297495 TATAATTCTATCTTAC-AGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
26297521 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
26297548 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
26297575 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
26297602 GGTAATTCTAC
1 GGTAATTCTAC
26297613 AACTTATCCA
Statistics
Matches: 144, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 22 0.15
27 122 0.85
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:26297510 original size:54 final size:54
Alignment explanation
Indices: 26297443--26297612 Score: 270
Period size: 54 Copynumber: 3.2 Consensus size: 54
26297433 AGTATCTAGG
* *
26297443 TAATTCTACCTTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCTA
1 TAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAA
*
26297497 TAATTCTATCTTACA-GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAA
1 TAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAA
* * **
26297550 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTCGG
1 TAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAA
26297604 TAATTCTAC
1 TAATTCTAC
26297613 AACTTATCCA
Statistics
Matches: 107, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 49 0.46
54 58 0.54
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (54 bp):
TAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAA
Found at i:26297544 original size:80 final size:81
Alignment explanation
Indices: 26297441--26297612 Score: 256
Period size: 80 Copynumber: 2.1 Consensus size: 81
26297431 AAAGTATCTA
* * ** * * *
26297441 GGTAATTCTACCTTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCTATAATTCTAT
1 GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGATAATTCTAC
26297506 CTTAC-AGGGTATTTC
66 CTTACAAGGGTATTTC
* *
26297521 GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGATAATTCTAC
26297586 CTTACAAGGGTATTTC
66 CTTACAAGGGTATTTC
26297602 GGTAATTCTAC
1 GGTAATTCTAC
26297613 AACTTATCCA
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
80 61 0.74
81 21 0.26
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (81 bp):
GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGATAATTCTAC
CTTACAAGGGTATTTC
Found at i:26300060 original size:28 final size:29
Alignment explanation
Indices: 26300029--26300093 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
26300019 AAAGTGATTT
* *
26300029 TTGATAAAAATGTCAATTG-G-GGATTAAA
1 TTGAGAAAAATGTAAATTGAGAGG-TTAAA
*
26300057 TTGAGAAAAGTGTAAATTGAGAGGTTAAA
1 TTGAGAAAAATGTAAATTGAGAGGTTAAA
*
26300086 TTGTGAAA
1 TTGAGAAA
26300094 TAAATGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 16 0.52
29 13 0.42
30 2 0.06
ACGTcount: A:0.43, C:0.02, G:0.25, T:0.31
Consensus pattern (29 bp):
TTGAGAAAAATGTAAATTGAGAGGTTAAA
Found at i:26308653 original size:16 final size:16
Alignment explanation
Indices: 26308632--26308676 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
26308622 TACCCTAAAT
*
26308632 ACCTAAGGGGAATGAA
1 ACCTAAGAGGAATGAA
*
26308648 ACCTAAGATGAATGAA
1 ACCTAAGAGGAATGAA
*
26308664 ACCTAAGATGAAT
1 ACCTAAGAGGAAT
26308677 TTTGTTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.47, C:0.13, G:0.22, T:0.18
Consensus pattern (16 bp):
ACCTAAGAGGAATGAA
Found at i:26316266 original size:40 final size:39
Alignment explanation
Indices: 26316106--26316268 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
26316096 TGTGTATGAA
* *
26316106 TGTGCGAATTGTGATATCTGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
26316145 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
26316184 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
26316223 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
26316263 TGTGCG
1 TGTGCG
26316269 GGTTACCATA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 96 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26316284 original size:40 final size:39
Alignment explanation
Indices: 26316106--26316299 Score: 244
Period size: 39 Copynumber: 4.9 Consensus size: 39
26316096 TGTGTATGAA
* * *
26316106 TGTGCGAATTGTGATATCTGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
26316145 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
26316184 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
26316223 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
26316263 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
26316300 GTTTGAACGA
Statistics
Matches: 137, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 96 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26318492 original size:39 final size:39
Alignment explanation
Indices: 26318461--26318637 Score: 173
Period size: 38 Copynumber: 4.6 Consensus size: 39
26318451 CAGCACAAAA
** * *
26318461 CTGCGGGACTTTAAGCTTAGATATAATACCAGCACTAGGC
1 CTGCGGGA-TTTAAGCCCAGATATAATACCAGCACGAAGC
*
26318501 CTACGGGATTT-AGCCCAGATATAATACCAGCACGAAGC
1 CTGCGGGATTTAAGCCCAGATATAATACCAGCACGAAGC
* *
26318539 CTGCGGGATTTAA-CCCGGATATATTACCAGCACGAAGC
1 CTGCGGGATTTAAGCCCAGATATAATACCAGCACGAAGC
* * * * *
26318577 CTGCAGGATTTAA-CCAAGATATAATAACAACA-TATAGC
1 CTGCGGGATTTAAGCCCAGATATAATACCAGCACGA-AGC
* *
26318615 CTGCGGGTCTTTAAGCCTAGATA
1 CTGCGGG-ATTTAAGCCCAGATA
26318638 CACATCAAAT
Statistics
Matches: 115, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
37 1 0.01
38 91 0.79
39 9 0.08
40 14 0.12
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (39 bp):
CTGCGGGATTTAAGCCCAGATATAATACCAGCACGAAGC
Found at i:26318524 original size:38 final size:38
Alignment explanation
Indices: 26318461--26318602 Score: 176
Period size: 38 Copynumber: 3.7 Consensus size: 38
26318451 CAGCACAAAA
** * *
26318461 CTGCGGGACTTTAAGCTTAGATATAATACCAGCACTAGGC
1 CTGCGGGA-TTTAA-CCCAGATATAATACCAGCACGAAGC
* *
26318501 CTACGGGATTTAGCCCAGATATAATACCAGCACGAAGC
1 CTGCGGGATTTAACCCAGATATAATACCAGCACGAAGC
* *
26318539 CTGCGGGATTTAACCCGGATATATTACCAGCACGAAGC
1 CTGCGGGATTTAACCCAGATATAATACCAGCACGAAGC
* *
26318577 CTGCAGGATTTAACCAAGATATAATA
1 CTGCGGGATTTAACCCAGATATAATA
26318603 ACAACATATA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
38 77 0.88
39 4 0.05
40 7 0.08
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (38 bp):
CTGCGGGATTTAACCCAGATATAATACCAGCACGAAGC
Found at i:26340264 original size:39 final size:39
Alignment explanation
Indices: 26340178--26340316 Score: 124
Period size: 39 Copynumber: 3.5 Consensus size: 39
26340168 ACTTGAAACC
* * *
26340178 AATTACCAGCACAAGCCTGCGGGAATTTAA-ACCCGG-TAT
1 AATT-CCAGCACAAGCCTGCGGG-ACTTAAGGCCCGGACAT
* *
26340217 AATACCAGCACGAAGCCTGCGGGACTT-TGGCCCGGACAT
1 AATTCCAGCAC-AAGCCTGCGGGACTTAAGGCCCGGACAT
* * * *
26340256 ATTTCCAGCACCTAGCCTGC-GGACTTAAGGTCCGGATAT
1 AATTCCAGCA-CAAGCCTGCGGGACTTAAGGCCCGGACAT
26340295 AATTCCAGCACATAGCCTGCGG
1 AATTCCAGCACA-AGCCTGCGG
26340317 ACCCTAAGTC
Statistics
Matches: 80, Mismatches: 13, Indels: 13
0.75 0.12 0.12
Matches are distributed among these distances:
38 22 0.28
39 56 0.70
40 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (39 bp):
AATTCCAGCACAAGCCTGCGGGACTTAAGGCCCGGACAT
Found at i:26340317 original size:39 final size:39
Alignment explanation
Indices: 26340210--26340332 Score: 128
Period size: 39 Copynumber: 3.2 Consensus size: 39
26340200 GAATTTAAAC
* * *
26340210 CCGG-TATAATACCAGCACGA-AGCCTGCGGGACTT-TGGC
1 CCGGATATAATTCCAGCAC-ATAGCCTGC-GGACTTAAGGT
* * *
26340248 CCGGACATATTTCCAGCACCTAGCCTGCGGACTTAAGGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACTTAAGGT
*
26340287 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAA-GT
1 CCGGATATAATTCCAGCACATAGCCTGCGGA-CTTAAGGT
26340326 CCGGATA
1 CCGGATA
26340333 CACATCAAAT
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
38 10 0.14
39 57 0.80
40 4 0.06
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.20
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACTTAAGGT
Found at i:26343555 original size:24 final size:24
Alignment explanation
Indices: 26343523--26343729 Score: 342
Period size: 24 Copynumber: 8.6 Consensus size: 24
26343513 TATCTCAAAT
*
26343523 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
26343547 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
26343571 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
26343595 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
26343619 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
26343643 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
26343667 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
26343691 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
26343715 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
26343730 ACATAATAAG
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:26351297 original size:24 final size:24
Alignment explanation
Indices: 26351265--26351471 Score: 342
Period size: 24 Copynumber: 8.6 Consensus size: 24
26351255 TATCTCAAAT
*
26351265 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
26351289 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
26351313 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
26351337 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
26351361 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
26351385 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
26351409 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
26351433 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
26351457 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
26351472 ACATAATAAG
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:26354753 original size:11 final size:11
Alignment explanation
Indices: 26354737--26354761 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26354727 TGACTATAGG
26354737 ATTGTAAATTC
1 ATTGTAAATTC
26354748 ATTGTAAATTC
1 ATTGTAAATTC
26354759 ATT
1 ATT
26354762 TTAATTATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (11 bp):
ATTGTAAATTC
Found at i:26356090 original size:46 final size:46
Alignment explanation
Indices: 26355931--26356090 Score: 187
Period size: 46 Copynumber: 3.4 Consensus size: 46
26355921 AGATTTGTGT
* * * * *
26355931 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGA
* * *
26355979 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-AGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAG-ATGAGA
**
26356025 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGA
*
26356071 GCCAGTGTCAGACATGTCTG
1 GCCAGTGTAAGACATGTCTG
26356091 AAATAGGGGA
Statistics
Matches: 96, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
45 2 0.02
46 68 0.71
47 15 0.16
48 11 0.11
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGA
Found at i:26357913 original size:46 final size:45
Alignment explanation
Indices: 26357809--26358023 Score: 184
Period size: 46 Copynumber: 4.7 Consensus size: 45
26357799 AGATTTGTGT
* * * *
26357809 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGCATTGAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA--CAGATGAGA
* *
26357857 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACAGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAG-ATGAGA
* * ***
26357903 GCCAGTGTAAGACATGTTTGGGACATGCATCAGCCTCGAGATTTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGATGAGA
* * * ** *
26357949 GCCAGTGTCAGACATGTCTGGGACATGCGTCGGGTAC-GA-GATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGA-GA
*
26357993 GCTAGTGTAAGACATGTCTGGGACATGCATC
1 GCCAGTGTAAGACATGTCTGGGACATGCATC
26358024 GGCACGGTTA
Statistics
Matches: 136, Mismatches: 27, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
44 30 0.22
45 2 0.01
46 75 0.55
47 18 0.13
48 11 0.08
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGA
Found at i:26358206 original size:24 final size:23
Alignment explanation
Indices: 26358165--26358211 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
26358155 TCCAATTTTA
26358165 TAAATATTGGAAAGTGATTAAGAC
1 TAAATATTGGAAAGTGA-TAAGAC
*
26358189 TAAATA-TGGAAACTTGATAAGAC
1 TAAATATTGGAAA-GTGATAAGAC
26358212 ATTAAGGGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (23 bp):
TAAATATTGGAAAGTGATAAGAC
Found at i:26364738 original size:27 final size:25
Alignment explanation
Indices: 26364681--26364740 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 25
26364671 CCTGGCAAAC
*
26364681 TCCCCATGTTACAGTCCCAGCTGAT
1 TCCCCATGTTACAGTCCCAGCAGAT
**
26364706 TACCCCATGTTTAGTGTCCCAGCAGAGT
1 T-CCCCATG-TTACAGTCCCAGCAGA-T
26364734 TCCCCAT
1 TCCCCAT
26364741 ATAGAGTGTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 1 0.03
26 7 0.24
27 19 0.66
28 2 0.07
ACGTcount: A:0.20, C:0.35, G:0.17, T:0.28
Consensus pattern (25 bp):
TCCCCATGTTACAGTCCCAGCAGAT
Found at i:26364859 original size:27 final size:27
Alignment explanation
Indices: 26364767--26364861 Score: 95
Period size: 27 Copynumber: 3.5 Consensus size: 27
26364757 GACTTCCCCA
* * *
26364767 TGTTTAATGTATCGGTGCA-TTTCCCTG
1 TGTTTAGTGTCTCGGTGGACTTT-CCTG
* * *
26364794 CGTTTAGTGTCCCGGTGGACTTT-TTCG
1 TGTTTAGTGTCTCGGTGGACTTTCCT-G
*
26364821 TGTTTAGTGTCTTGGTGGACTTTCCTG
1 TGTTTAGTGTCTCGGTGGACTTTCCTG
26364848 TGTTTAGTGTCTCG
1 TGTTTAGTGTCTCG
26364862 ATAGGCTTCC
Statistics
Matches: 54, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
26 1 0.02
27 49 0.91
28 4 0.07
ACGTcount: A:0.09, C:0.18, G:0.27, T:0.45
Consensus pattern (27 bp):
TGTTTAGTGTCTCGGTGGACTTTCCTG
Found at i:26364988 original size:45 final size:45
Alignment explanation
Indices: 26364937--26365022 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
26364927 CGTGCTTTCA
** *
26364937 CATGATGCCATAGCGTCTTTCAGCTATGGTCTTACTCATTTCTAT
1 CATGATGCCATAAAGTATTTCAGCTATGGTCTTACTCATTTCTAT
* *
26364982 CATGATGTCATAAAGTATTTTAGCTATGGTCTTACTCATTT
1 CATGATGCCATAAAGTATTTCAGCTATGGTCTTACTCATTT
26365023 ATGATGTCAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.23, C:0.20, G:0.15, T:0.42
Consensus pattern (45 bp):
CATGATGCCATAAAGTATTTCAGCTATGGTCTTACTCATTTCTAT
Found at i:26367428 original size:2 final size:2
Alignment explanation
Indices: 26367421--26367450 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
26367411 GTTGTAAGCT
26367421 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26367451 CATGCATGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26372820 original size:60 final size:61
Alignment explanation
Indices: 26372722--26372875 Score: 238
Period size: 60 Copynumber: 2.5 Consensus size: 61
26372712 TAAAAGTGAT
* * *
26372722 GCCTTTGTGGTTGTTCTTTGTTACATGTGAGCCTTAGTGGCAGAACCTGTTGTATATGGAA
1 GCCTTTGTGGTTGTTCTTTGTTACATGTGAGCCCTAGTGGCAGAACCTATTATATATGGAA
* *
26372783 G-CTTTGTGGTTGTTCTTTATTACATGTGAGCCCTAGTGGCAGAACCTATTATATGTGGAA
1 GCCTTTGTGGTTGTTCTTTGTTACATGTGAGCCCTAGTGGCAGAACCTATTATATATGGAA
* *
26372843 GCCTTTTTGGTTGTTCTTTGTTACATGTCAGCC
1 GCCTTTGTGGTTGTTCTTTGTTACATGTGAGCC
26372876 TTTTTGGCTG
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
60 55 0.65
61 29 0.35
ACGTcount: A:0.18, C:0.16, G:0.25, T:0.41
Consensus pattern (61 bp):
GCCTTTGTGGTTGTTCTTTGTTACATGTGAGCCCTAGTGGCAGAACCTATTATATATGGAA
Found at i:26379574 original size:20 final size:20
Alignment explanation
Indices: 26379549--26379586 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26379539 GTTTATTCGC
*
26379549 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
26379569 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
26379587 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:26388065 original size:39 final size:39
Alignment explanation
Indices: 26388020--26388180 Score: 250
Period size: 39 Copynumber: 4.1 Consensus size: 39
26388010 ATGTGATGAA
26388020 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
26388059 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** * *
26388098 TGTGCGAGCTATGATATCCGGGCTAAGCCCAAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
26388137 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
26388177 TGTG
1 TGTG
26388181 GGTTACCATA
Statistics
Matches: 112, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 98 0.88
40 14 0.12
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26396067 original size:40 final size:39
Alignment explanation
Indices: 26395909--26396069 Score: 245
Period size: 38 Copynumber: 4.2 Consensus size: 39
26395899 ATGTGATGAA
*
26395909 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAA-GCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
26395947 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAA-
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
26395985 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
26396024 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
26396064 TGTGCG
1 TGTGCG
26396070 GGTTACCATA
Statistics
Matches: 113, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
38 68 0.60
39 28 0.25
40 17 0.15
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26396085 original size:40 final size:40
Alignment explanation
Indices: 26395926--26396105 Score: 145
Period size: 38 Copynumber: 4.6 Consensus size: 40
26395916 ATTGTGATAT
* * *** *
26395926 CCGGGCTAAG-CCCGAA-GCAATTGTGCGAATTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * ** *
26395964 CCGGGCTAAG-CCCGAAGGCA-ATGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *** *
26396002 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
26396041 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
26396081 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26396106 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
38 50 0.41
39 27 0.22
40 45 0.37
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:26413830 original size:35 final size:35
Alignment explanation
Indices: 26413791--26413863 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 35
26413781 AACCAATCAA
* *
26413791 CACACCAGATGCTCATAAGAGACAGTACCGTCTAG
1 CACACCAGATGCTCATAAGAGACAGTACCATCCAG
* * *
26413826 CACACCAGTTGCTCGTAAGAGCCAGTACCATCCAG
1 CACACCAGATGCTCATAAGAGACAGTACCATCCAG
26413861 CAC
1 CAC
26413864 GCCATTTAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.32, C:0.33, G:0.19, T:0.16
Consensus pattern (35 bp):
CACACCAGATGCTCATAAGAGACAGTACCATCCAG
Found at i:26433724 original size:26 final size:26
Alignment explanation
Indices: 26433695--26433775 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
26433685 TCGATCACAT
26433695 GTGTAGTACTAAGTGCAGGCTACTAC
1 GTGTAGTACTAAGTGCAGGCTACTAC
* * *
26433721 GTGTA-T-C-AAATGGTTAGG-TCAC-AT
1 GTGTAGTACTAAGT-G-CAGGCT-ACTAC
26433745 GTGTAGTACTAAGTGCAGGCTACTAC
1 GTGTAGTACTAAGTGCAGGCTACTAC
26433771 GTGTA
1 GTGTA
26433776 CCGGATAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 16
0.65 0.10 0.25
Matches are distributed among these distances:
23 3 0.07
24 9 0.22
25 12 0.29
26 14 0.34
27 3 0.07
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (26 bp):
GTGTAGTACTAAGTGCAGGCTACTAC
Found at i:26433764 original size:50 final size:50
Alignment explanation
Indices: 26433635--26433814 Score: 245
Period size: 50 Copynumber: 3.6 Consensus size: 50
26433625 ATCTATTATG
* * * *
26433635 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAA-TT
* * * **
26433686 CGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATT
**
26433736 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATT
26433786 -GGTCACATGTGTAGTACTAAGTGCAGGCT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCT
26433815 GCTATGCGTA
Statistics
Matches: 113, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
49 29 0.26
50 45 0.40
51 39 0.35
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATT
Found at i:26443511 original size:20 final size:20
Alignment explanation
Indices: 26443486--26443526 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
26443476 ACGTGTAAGA
26443486 CCATATCTGGGATATGGCAT
1 CCATATCTGGGATATGGCAT
26443506 CCATATCTGGGATATGGCAT
1 CCATATCTGGGATATGGCAT
26443526 C
1 C
26443527 GATACAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (20 bp):
CCATATCTGGGATATGGCAT
Found at i:26443616 original size:43 final size:43
Alignment explanation
Indices: 26443506--26443647 Score: 179
Period size: 43 Copynumber: 3.4 Consensus size: 43
26443496 GATATGGCAT
*
26443506 CCAT-ATCTGGGATATGGCATCGATAC-A-ACTTCGTGTAAGA
1 CCATAATCTGGGATATGGCATCGATACGAGACTTCATGTAAGA
* * *
26443546 CTAT-ATCTGGGATATGGCATCAATACGAGACTTCCTGTAAGA
1 CCATAATCTGGGATATGGCATCGATACGAGACTTCATGTAAGA
* *
26443588 CCATAAT-TGGGCTATTGGCATCGATACGAGATTTCATGTAAGA
1 CCATAATCTGGGATA-TGGCATCGATACGAGACTTCATGTAAGA
26443631 CCAT-ATCTGGGATATGG
1 CCATAATCTGGGATATGG
26443648 AATTGGTACA
Statistics
Matches: 88, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
40 24 0.27
41 1 0.01
42 26 0.30
43 37 0.42
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (43 bp):
CCATAATCTGGGATATGGCATCGATACGAGACTTCATGTAAGA
Found at i:26446721 original size:12 final size:13
Alignment explanation
Indices: 26446699--26446727 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
26446689 TAATTAAATG
26446699 AATTAAAAAGCCA
1 AATTAAAAAGCCA
26446712 AATT-AAAAGCCA
1 AATTAAAAAGCCA
26446724 AATT
1 AATT
26446728 TTGTCCATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.21
Consensus pattern (13 bp):
AATTAAAAAGCCA
Found at i:26447605 original size:42 final size:42
Alignment explanation
Indices: 26447558--26447716 Score: 212
Period size: 42 Copynumber: 3.8 Consensus size: 42
26447548 TAGGATTACG
26447558 TGTAAGACCATATCTGGGATATGGCATTGATACGAGACTTCT
1 TGTAAGACCATATCTGGGATATGGCATTGATACGAGACTTCT
* * *
26447600 TGTAAGACCATATCTGAGATTTGGCATTGATATGAGACTT-T
1 TGTAAGACCATATCTGGGATATGGCATTGATACGAGACTTCT
* * * * *
26447641 GTGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTTCA
1 -TGTAAGACCATATCTGGGATA-TGGCATTGATACGAGACTTCT
*
26447685 TGTAAGACCATATCTGGGATATGGAATTGATA
1 TGTAAGACCATATCTGGGATATGGCATTGATA
26447717 TAGTACTGTG
Statistics
Matches: 99, Mismatches: 15, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
41 1 0.01
42 63 0.64
43 35 0.35
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATTGATACGAGACTTCT
Found at i:26447699 original size:85 final size:84
Alignment explanation
Indices: 26447557--26447730 Score: 242
Period size: 85 Copynumber: 2.1 Consensus size: 84
26447547 CTAGGATTAC
* * * *
26447557 GTGTAAGACCATATCTGGGATATGGCATTGATACGAGACTTCTTGTAAGACCATATCTGAGATTT
1 GTGTAAGACCATAGCTGGGATATGGCATCGATACGAGACTTCATGTAAGACCATATCTGAGATAT
* *
26447622 GGCATTGATATGAG-ACTTT
66 GGAATTGATAT-AGTACTGT
* * *
26447641 GTGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTTCATGTAAGACCATATCTGGGATA
1 GTGTAAGACCATAGCTGGGATA-TGGCATCGATACGAGACTTCATGTAAGACCATATCTGAGATA
26447706 TGGAATTGATATAGTACTGT
65 TGGAATTGATATAGTACTGT
26447726 GTGTA
1 GTGTA
26447731 CCAGAATCTC
Statistics
Matches: 79, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
84 22 0.28
85 57 0.72
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (84 bp):
GTGTAAGACCATAGCTGGGATATGGCATCGATACGAGACTTCATGTAAGACCATATCTGAGATAT
GGAATTGATATAGTACTGT
Found at i:26449287 original size:44 final size:42
Alignment explanation
Indices: 26449237--26449393 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 42
26449227 TGTGTTTTCG
*
26449237 TGTAAGACCACGTCTAGGACATTGGCATCGACTTATGATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TT-TGATTTACA
* *
26449281 TGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTT-CG
1 TGTAAGACCACGTCTGGGACATTGGCATCG-ATTTGATTTACA
*** * * *
26449323 TGTAAGACCTTTTCTGGGATAGTAGCATCGATATTTGA-TTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCG--ATTTGATTTACA
*
26449366 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
26449394 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
42 28 0.30
43 35 0.37
44 30 0.32
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATTTGATTTACA
Found at i:26468427 original size:38 final size:38
Alignment explanation
Indices: 26468342--26468478 Score: 118
Period size: 38 Copynumber: 3.6 Consensus size: 38
26468332 ACTTGAAACC
* ** *
26468342 AATTACCAGCACAAGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACAAGCCTGCGGG-ACTTAGGCCCGGACAT
* *
26468381 AATACCAGCACGAAGCCTGCGGGACTT-TGCCCGGACAT
1 AATTCCAGCAC-AAGCCTGCGGGACTTAGGCCCGGACAT
* * * *
26468419 ATTTCCAGCACTAGCCTGC-GGACTTAAGGTCCGGATAT
1 AATTCCAGCACAAGCCTGCGGGACTT-AGGCCCGGACAT
26468457 AATTCCAGCACATAGCCTGCGG
1 AATTCCAGCACA-AGCCTGCGG
26468479 ACCTAAGTCC
Statistics
Matches: 79, Mismatches: 13, Indels: 11
0.77 0.13 0.11
Matches are distributed among these distances:
36 6 0.08
37 12 0.15
38 39 0.49
39 21 0.27
40 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.20
Consensus pattern (38 bp):
AATTCCAGCACAAGCCTGCGGGACTTAGGCCCGGACAT
Found at i:26468489 original size:38 final size:38
Alignment explanation
Indices: 26468411--26468493 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
26468401 GGGACTTTGC
* * *
26468411 CCGGACATATTTCCAGCACTAGCCTGCGGACTTAAGGT
1 CCGGATATAATTCCAGCACTAGCCTGCGGACCTAAGGT
26468449 CCGGATATAATTCCAGCACATAGCCTGCGGACCTAA-GT
1 CCGGATATAATTCCAGCAC-TAGCCTGCGGACCTAAGGT
26468487 CCGGATA
1 CCGGATA
26468494 CACATCAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
38 26 0.63
39 15 0.37
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (38 bp):
CCGGATATAATTCCAGCACTAGCCTGCGGACCTAAGGT
Found at i:26471392 original size:29 final size:29
Alignment explanation
Indices: 26471330--26471432 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
26471320 GTGACGAGAT
* * *
26471330 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
26471359 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
26471388 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
26471417 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26471433 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:26479373 original size:29 final size:29
Alignment explanation
Indices: 26479311--26479413 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
26479301 GTGACGAGAT
* * *
26479311 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
26479340 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
26479369 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
26479398 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26479414 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:26484380 original size:66 final size:68
Alignment explanation
Indices: 26484304--26484490 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
26484294 TAGTACCACT
*
26484304 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
26484366 CACG
65 CACG
26484370 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
26484435 ATCACG
63 ATCACG
26484441 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
26484491 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:26484415 original size:71 final size:71
Alignment explanation
Indices: 26484327--26484490 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
26484317 CGATTTGTCT
26484327 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
26484392 CTTTCA
66 CTTTCA
26484398 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
26484463 CTTTCA
66 CTTTCA
26484469 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
26484491 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:26484528 original size:71 final size:70
Alignment explanation
Indices: 26484327--26484524 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
26484317 CGATTTGTCT
* * *
26484327 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
26484392 CTTTCA
65 CTTTCA
* * *
26484398 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
26484463 CTTTCA
65 CTTTCA
* *
26484469 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
26484525 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:26491950 original size:66 final size:68
Alignment explanation
Indices: 26491874--26492060 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
26491864 TAGTACCACT
*
26491874 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
26491936 CACG
65 CACG
26491940 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
26492005 ATCACG
63 ATCACG
26492011 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
26492061 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:26491985 original size:71 final size:71
Alignment explanation
Indices: 26491897--26492060 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
26491887 CGATTTGTCT
26491897 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
26491962 CTTTCA
66 CTTTCA
26491968 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
26492033 CTTTCA
66 CTTTCA
26492039 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
26492061 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:26492098 original size:71 final size:70
Alignment explanation
Indices: 26491897--26492094 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
26491887 CGATTTGTCT
* * *
26491897 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
26491962 CTTTCA
65 CTTTCA
* * *
26491968 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
26492033 CTTTCA
65 CTTTCA
* *
26492039 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
26492095 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:26499313 original size:48 final size:48
Alignment explanation
Indices: 26499203--26499472 Score: 371
Period size: 48 Copynumber: 5.6 Consensus size: 48
26499193 ATAAGATCCC
* * * * * * *
26499203 GTGTAAGACTATGTCTGGGACATGGCAT-TAGCATCAGAGATGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGA-CGT-TGATATGTGTGCCA
* *
26499252 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGACATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCA
*
26499300 GTGTAAGACCATGTCTGGGACATGGCAGCGACGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCA
* *
26499348 GTGTAAGACCATGTATGGGACATGGCATCGATGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCA
* * *
26499396 GTGTAAGACCATGTCTGGGACATGGCATCAACATTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCA
*
26499444 GTGTAAGACCATGTCTAGGACATGGCATC
1 GTGTAAGACCATGTCTGGGACATGGCATC
26499473 AGTACCGATA
Statistics
Matches: 200, Mismatches: 20, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
48 171 0.86
49 29 0.14
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCA
Found at i:26508779 original size:23 final size:23
Alignment explanation
Indices: 26508753--26508796 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
26508743 TCATGCTTTA
26508753 ATATATCAAGTGAT-ATCATTTCC
1 ATATATCAAGT-ATCATCATTTCC
*
26508776 ATATATCATGTATCATCATTT
1 ATATATCAAGTATCATCATTT
26508797 TTCATGAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.34, C:0.16, G:0.07, T:0.43
Consensus pattern (23 bp):
ATATATCAAGTATCATCATTTCC
Found at i:26515179 original size:40 final size:40
Alignment explanation
Indices: 26515124--26515247 Score: 178
Period size: 40 Copynumber: 3.1 Consensus size: 40
26515114 TGGATGATAA
*
26515124 CCGGGCTAAGTCCCGAAGAAATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATAT
*
26515164 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATAT
* * * *
26515204 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTA-CTATAT
26515244 CCGG
1 CCGG
26515248 TTAAATCCTG
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.03
40 75 0.97
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATAT
Found at i:26519910 original size:23 final size:23
Alignment explanation
Indices: 26519884--26519927 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
26519874 TCATGCTTTA
26519884 ATATATCAAGTGAT-ATCATTTCC
1 ATATATCAAGT-ATCATCATTTCC
*
26519907 ATATATCATGTATCATCATTT
1 ATATATCAAGTATCATCATTT
26519928 TTCATGTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.34, C:0.16, G:0.07, T:0.43
Consensus pattern (23 bp):
ATATATCAAGTATCATCATTTCC
Found at i:26524199 original size:15 final size:15
Alignment explanation
Indices: 26524179--26524207 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26524169 TAATTAATAA
26524179 TAAGGTTTATATGAG
1 TAAGGTTTATATGAG
26524194 TAAGGTTTATATGA
1 TAAGGTTTATATGA
26524208 AATTGTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.41
Consensus pattern (15 bp):
TAAGGTTTATATGAG
Found at i:26528061 original size:21 final size:21
Alignment explanation
Indices: 26528037--26528091 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
26528027 TCATTCTCAG
*
26528037 CAACTTCTTCTTCTTCAGCAA
1 CAACTTCTTCTTCTGCAGCAA
*
26528058 CAACTT-TCTCTTCTGCAGCAG
1 CAACTTCT-TCTTCTGCAGCAA
*
26528079 TAACTTCCTTCTT
1 CAACTT-CTTCTT
26528092 AACAACAGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 1 0.04
21 22 0.79
22 4 0.14
23 1 0.04
ACGTcount: A:0.20, C:0.33, G:0.07, T:0.40
Consensus pattern (21 bp):
CAACTTCTTCTTCTGCAGCAA
Found at i:26536074 original size:30 final size:28
Alignment explanation
Indices: 26536037--26536099 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 28
26536027 AAAAGGAAGG
26536037 AAAACAAACTTTAATAAAACATAAATAAA
1 AAAACAAACTTTAAT-AAACATAAATAAA
* * *
26536066 ACAAACAAATTTTAATGAATATAAATAAA
1 A-AAACAAACTTTAATAAACATAAATAAA
26536095 AAAAC
1 AAAAC
26536100 TAAAATTATG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 4 0.13
29 13 0.43
30 13 0.43
ACGTcount: A:0.67, C:0.10, G:0.02, T:0.22
Consensus pattern (28 bp):
AAAACAAACTTTAATAAACATAAATAAA
Found at i:26540496 original size:93 final size:93
Alignment explanation
Indices: 26540391--26540562 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
26540381 GCCCATAAGT
* *
26540391 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26540456 CAAGCTCGGATGCCCAGTTACATCTCTC
66 CAAGCTCGGATGCCCAGTTACATCTCTC
*
26540484 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
26540549 CGAGTTCGGATGCC
66 CAAGCTCGGATGCC
26540563 TAAACATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGCTCGGATGCCCAGTTACATCTCTC
Found at i:26540558 original size:46 final size:46
Alignment explanation
Indices: 26540383--26540558 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 46
26540373 TGTAACCCGC
* *
26540383 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
26540429 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGG--ATGCCCAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCA--T
* *** *
26540475 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
26540522 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
26540559 TGCCTAAACA
Statistics
Matches: 109, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
44 4 0.04
46 69 0.63
47 31 0.28
49 5 0.05
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:26545872 original size:12 final size:10
Alignment explanation
Indices: 26545838--26545863 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
26545828 TATTAAAAAA
26545838 TTATAAAATT
1 TTATAAAATT
26545848 TTATAAAATT
1 TTATAAAATT
26545858 TTATAA
1 TTATAA
26545864 TATATTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
TTATAAAATT
Found at i:26548736 original size:18 final size:18
Alignment explanation
Indices: 26548707--26548748 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
26548697 ACATGCATTT
*
26548707 CATGCA-TTCATGCAACC
1 CATGCATTTCATGCAAAC
26548724 CATGCATTTCATGCAAAC
1 CATGCATTTCATGCAAAC
26548742 CATGCAT
1 CATGCAT
26548749 CCCATACAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 6 0.26
18 17 0.74
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.26
Consensus pattern (18 bp):
CATGCATTTCATGCAAAC
Found at i:26552204 original size:24 final size:22
Alignment explanation
Indices: 26552169--26552229 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 22
26552159 AATGAGAGTG
26552169 AGAAAGACAAGAAAA-TTCAAAAGA
1 AGAAAGA-AAGAAAAGTT-AAAA-A
26552193 AGAAAGGAAAGAATAAGTTAAAAA
1 AGAAA-GAAAGAA-AAGTTAAAAA
26552217 A-AAAGAAAGAAAA
1 AGAAAGAAAGAAAA
26552230 ACACAAAGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
21 2 0.06
22 7 0.21
23 3 0.09
24 12 0.35
25 8 0.24
26 2 0.06
ACGTcount: A:0.70, C:0.03, G:0.18, T:0.08
Consensus pattern (22 bp):
AGAAAGAAAGAAAAGTTAAAAA
Found at i:26556955 original size:40 final size:40
Alignment explanation
Indices: 26556801--26556948 Score: 269
Period size: 40 Copynumber: 3.7 Consensus size: 40
26556791 ATTTAGTCAA
* *
26556801 ATATAGCAACTCACACAAATGCCTTCGGGACTTAGCCCGG
1 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
26556841 ATATAGTAACTCGCACAAATGCCTTCGGGACTTGGCCCGG
1 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
26556881 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
26556921 ATATAGTAACTCGCACAAATGCCTTCGG
1 ATATAGTAACTCGCACAAATGCCTTCGG
26556949 ATCTTAGTCC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
Found at i:26558194 original size:13 final size:13
Alignment explanation
Indices: 26558171--26558204 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
26558161 TTATTTTATT
26558171 ATTTCTAACACAAA
1 ATTT-TAACACAAA
26558185 ATTTTAACACAAA
1 ATTTTAACACAAA
26558198 ATGTTTA
1 AT-TTTA
26558205 TAATATGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (13 bp):
ATTTTAACACAAA
Found at i:26562983 original size:40 final size:40
Alignment explanation
Indices: 26562938--26563105 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
26562928 CGGAATATAA
26562938 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
26562978 CCGGATAGAAT-ATCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
26563018 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
26563058 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
26563098 CCGGATAT
1 CCGGATAT
26563106 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.02
40 101 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:26563088 original size:80 final size:80
Alignment explanation
Indices: 26562954--26563103 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
26562944 ATAATCACGT
*
26562954 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATATCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGAT-TTAGC
26563018 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
26563034 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTC-GCACGAA-TGCCTTCGGGATTTAG
26563097 CCCGGAT
64 CCCGGAT
26563104 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:26568732 original size:79 final size:80
Alignment explanation
Indices: 26568628--26568847 Score: 284
Period size: 79 Copynumber: 2.8 Consensus size: 80
26568618 GCTCGATTGT
* * * *
26568628 CTTCGGGACA-TAGCCCGG-TTATAGTAATTCGCACAAATGCCCTCGGGACTTAACCCGGTTTTG
1 CTTCGGGA-ATTAACCCGGATT-TAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGATTTA
26568691 GTAACTCGCACAAATGC
64 GTAACTCGCACAAATGC
* *
26568708 CTTC-GGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGT
1 CTTCGGGAATTAACCCGGATTTAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGT
26568772 AACTCGCACAAATGC
66 AACTCGCACAAATGC
* * * * * *
26568787 CTTCGGGACTTAATCTGGATTTAGTCAATTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 CTTCGGGAATTAACCCGGATTTAGT-AATTCGCACAAATGCCTTCGGGACTTAACCCGGAT
26568848 ACCATTCAAA
Statistics
Matches: 122, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
78 1 0.01
79 68 0.56
80 23 0.19
81 30 0.25
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (80 bp):
CTTCGGGAATTAACCCGGATTTAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGT
AACTCGCACAAATGC
Found at i:26568734 original size:39 final size:40
Alignment explanation
Indices: 26568628--26568847 Score: 282
Period size: 40 Copynumber: 5.5 Consensus size: 40
26568618 GCTCGATTGT
* * *
26568628 CTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGC
* * *
26568668 CCTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
*
26568708 CTTC-GGAATTAACCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
*
26568747 CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* * * * *
26568787 CTTCGGGACTTAATCTGGATTTAGTCAATTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGATTTAGT-AACTCGCACAAATGC
*
26568828 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAACCCGGAT
26568848 ACCATTCAAA
Statistics
Matches: 159, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 36 0.23
40 92 0.58
41 31 0.19
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:26576891 original size:40 final size:40
Alignment explanation
Indices: 26576845--26577054 Score: 248
Period size: 40 Copynumber: 5.2 Consensus size: 40
26576835 GCTCGATTGT
* *
26576845 CTTCGGGACATAGCCCAG-TTATAGTAATTCGCACAAATGC
1 CTTCGGGACATAACCCAGATT-TAGTAACTCGCACAAATGC
* * *
26576885 CCTCGGGACTTAACCC-GATTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAACCCAGA-TTTAGTAACTCGCACAAATGC
*
26576925 CTTCGGGA-ATTAACCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAACCCAGATTTAGTAACTCGCACAAATGC
*
26576965 CTTCGGGA-ATTAACCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAACCCAGATTTAGTAACTCGCACAAATGC
* * * *
26577005 CTTCGGGACTTAACCCAGATTTAGTCAATTAGCACAAAAGC
1 CTTCGGGACATAACCCAGATTTAGT-AACTCGCACAAATGC
26577046 CTTCGGGAC
1 CTTCGGGAC
26577055 TTAGCCCGGA
Statistics
Matches: 151, Mismatches: 13, Indels: 11
0.86 0.07 0.06
Matches are distributed among these distances:
39 1 0.01
40 125 0.83
41 25 0.17
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (40 bp):
CTTCGGGACATAACCCAGATTTAGTAACTCGCACAAATGC
Found at i:26576964 original size:80 final size:79
Alignment explanation
Indices: 26576845--26577062 Score: 287
Period size: 80 Copynumber: 2.7 Consensus size: 79
26576835 GCTCGATTGT
* * *
26576845 CTTCGGGACA-TAGCCCAG-TTATAGTAATTCGCACAAATGCCCTCGGGACTTAACCCGATTTTG
1 CTTCGGGA-ATTAACCCAGATT-TAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGA-TTTA
26576908 GTAACTCGCACAAATGC
63 GTAACTCGCACAAATGC
* * *
26576925 CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGT
1 CTTCGGGAATTAACCCAGATTTAGTAATTCGCACAAATGCCTTCGGGACTTAACCC-GATTTAGT
26576990 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* * * *
26577005 CTTCGGGACTTAACCCAGATTTAGTCAATTAGCACAAAAGCCTTCGGGACTTAGCCCG
1 CTTCGGGAATTAACCCAGATTTAGT-AATTCGCACAAATGCCTTCGGGACTTAACCCG
26577063 GATACCATTC
Statistics
Matches: 121, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
79 1 0.01
80 90 0.74
81 30 0.25
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (79 bp):
CTTCGGGAATTAACCCAGATTTAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGATTTAGTA
ACTCGCACAAATGC
Found at i:26580295 original size:29 final size:29
Alignment explanation
Indices: 26580253--26580310 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
26580243 TGCAAAAGAA
26580253 TGTTAAGTTTAATTGGACTGAAGAGTGTC
1 TGTTAAGTTTAATTGGACTGAAGAGTGTC
26580282 TGTTAAGTTTAATTGGACTGAAGAGTGTC
1 TGTTAAGTTTAATTGGACTGAAGAGTGTC
26580311 AATAAAGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.07, G:0.28, T:0.38
Consensus pattern (29 bp):
TGTTAAGTTTAATTGGACTGAAGAGTGTC
Found at i:26580318 original size:29 final size:29
Alignment explanation
Indices: 26580257--26580320 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
26580247 AAAGAATGTT
** *
26580257 AAGTTTAATTGGACTGAAGAGTGTCTGTT
1 AAGTTTAATTGGACTGAAGAGTGTCAATA
26580286 AAGTTTAATTGGACTGAAGAGTGTCAATA
1 AAGTTTAATTGGACTGAAGAGTGTCAATA
26580315 AAGTTT
1 AAGTTT
26580321 TGAGAAGTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (29 bp):
AAGTTTAATTGGACTGAAGAGTGTCAATA
Found at i:26580649 original size:18 final size:18
Alignment explanation
Indices: 26580614--26580649 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26580604 TATTTGATGA
*
26580614 ATCAAAAAGATTTGAATT
1 ATCAAAAAGATTTAAATT
26580632 ATCAAAAAGATTTAAATT
1 ATCAAAAAGATTTAAATT
26580650 TACGACAACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.33
Consensus pattern (18 bp):
ATCAAAAAGATTTAAATT
Found at i:26585714 original size:45 final size:45
Alignment explanation
Indices: 26585650--26585825 Score: 225
Period size: 45 Copynumber: 4.0 Consensus size: 45
26585640 AATATCGTAC
* * *
26585650 GATACTATTCAGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGA
1 GATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
* * *
26585695 GATACTATTCGGGCCTTTGATCCTAGCAGGCTATAATGCCAGTGA
1 GATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
* *
26585740 GATACTATTAGAGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 GATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
* *
26585785 AATGA-TA-TCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTG
1 GAT-ACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTG
26585826 GATGAATTCG
Statistics
Matches: 117, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
42 10 0.09
43 18 0.15
44 3 0.03
45 85 0.73
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (45 bp):
GATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
Found at i:26586380 original size:16 final size:18
Alignment explanation
Indices: 26586349--26586381 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
26586339 AACTTGTCAC
26586349 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
26586367 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
26586382 AATTCGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:26595117 original size:29 final size:29
Alignment explanation
Indices: 26595075--26595135 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
26595065 CCTTGTTTGA
* *
26595075 ATCTTTTTAATAATATAGAGACTAAATTG
1 ATCTATTTAATAATAGAGAGACTAAATTG
* *
26595104 ATCTATTTAATAATAGAGGGACTAATTTG
1 ATCTATTTAATAATAGAGAGACTAAATTG
26595133 ATC
1 ATC
26595136 CGGTCTCTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.39
Consensus pattern (29 bp):
ATCTATTTAATAATAGAGAGACTAAATTG
Found at i:26608231 original size:20 final size:20
Alignment explanation
Indices: 26608206--26608259 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
26608196 AAGCCCCATG
**
26608206 GTATCGATATTTTTACACGA
1 GTATCGATATTTTTACAAAA
* *
26608226 GTATCGGTATATTTACAAAA
1 GTATCGATATTTTTACAAAA
*
26608246 GTATCGATGTTTTT
1 GTATCGATATTTTT
26608260 TAGTTGGTAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.43
Consensus pattern (20 bp):
GTATCGATATTTTTACAAAA
Found at i:26620821 original size:40 final size:40
Alignment explanation
Indices: 26620736--26620886 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
26620726 AATTGAATGA
* * *
26620736 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
26620776 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
26620817 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
26620856 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
26620887 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:26620900 original size:40 final size:40
Alignment explanation
Indices: 26620772--26620902 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
26620762 TATGCTGGAA
* * *
26620772 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
26620812 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
26620852 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
26620892 ATTATATCCGG
1 ATTATATCCGG
26620903 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:26628737 original size:40 final size:40
Alignment explanation
Indices: 26628652--26628802 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
26628642 AATTGAATGA
* * *
26628652 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
26628692 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
26628733 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
26628772 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
26628803 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:26628816 original size:40 final size:40
Alignment explanation
Indices: 26628688--26628818 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
26628678 TATGCTGGAA
* * *
26628688 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
26628728 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
26628768 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
26628808 ATTATATCCGG
1 ATTATATCCGG
26628819 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:26633454 original size:28 final size:28
Alignment explanation
Indices: 26633392--26633493 Score: 141
Period size: 29 Copynumber: 3.6 Consensus size: 28
26633382 GTGACGAGAT
* *
26633392 TGGCACTAAGTGTGCAAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
*
26633421 TGGCACTAAGTGTGCGAGCTTAAATTTA
1 TGGCACTAAGTGTGCGAGCTTAAATATA
* *
26633449 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
26633478 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26633494 TGATCGATTA
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 30 0.45
29 36 0.55
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:26639493 original size:23 final size:22
Alignment explanation
Indices: 26639442--26639493 Score: 52
Period size: 23 Copynumber: 2.3 Consensus size: 22
26639432 TACTTTATTC
26639442 AATTTTAACTTTTATTCGAAAA
1 AATTTTAACTTTTATTCGAAAA
* * *
26639464 TACTTTAATTTGTTATATC-AAAA
1 AATTTTAACTT-TTAT-TCGAAAA
26639487 AATTTTA
1 AATTTTA
26639494 TCAAATAAAG
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
22 8 0.35
23 13 0.57
24 2 0.09
ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48
Consensus pattern (22 bp):
AATTTTAACTTTTATTCGAAAA
Found at i:26664952 original size:40 final size:40
Alignment explanation
Indices: 26664871--26665052 Score: 242
Period size: 40 Copynumber: 4.6 Consensus size: 40
26664861 AAACCAAGTA
** * **
26664871 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTTAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
26664910 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
26664950 CCTTCGGGACTTAGCCCGGTAATGGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
**
26664990 CCTTCGGGACTTAGCCCGGACATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
26665030 CCTTCGGGACTTAGCCCAGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
26665053 CATCCGAATA
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 13 0.10
40 113 0.90
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:26667322 original size:66 final size:66
Alignment explanation
Indices: 26667237--26667367 Score: 154
Period size: 66 Copynumber: 2.0 Consensus size: 66
26667227 CATGTTAAAA
* * * ** * * *
26667237 AAGAAATGGTGTGGCGAATTCACTATGGAAGTTCATTCGTTACACCAAGATTAATTCATGCCAAA
1 AAGAAATGGTATCGCGAATTCACAAAAGAAGTTCATCCGCTACACCAAGATTAATCCATGCCAAA
26667302 C
66 C
* ** *
26667303 AAGAAATGGTATCGTGAATTCACAAAAGAAGTTCATCCGCTACATTAGGATTAATCCATGCCAAA
1 AAGAAATGGTATCGCGAATTCACAAAAGAAGTTCATCCGCTACACCAAGATTAATCCATGCCAAA
26667368 GAAAAAGTGA
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
66 53 1.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (66 bp):
AAGAAATGGTATCGCGAATTCACAAAAGAAGTTCATCCGCTACACCAAGATTAATCCATGCCAAA
C
Found at i:26674068 original size:27 final size:26
Alignment explanation
Indices: 26674020--26674071 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
26674010 GCGAGGCTGC
*
26674020 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
26674046 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
26674072 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:26674801 original size:27 final size:27
Alignment explanation
Indices: 26674701--26674811 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
26674691 CAAAATAGTC
** *
26674701 ATTTTACCCT-CTAGGGGTAAATCGGT-
1 ATTTTACCCTAC-AGGGGTATTTCAGTA
* *
26674727 ATTTCTACCCTACAAGGGTATTTCGGTA
1 ATTT-TACCCTACAGGGGTATTTCAGTA
* *
26674755 ATTCTACCCTACAGGGGTATTTCAATA
1 ATTTTACCCTACAGGGGTATTTCAGTA
26674782 ATTTTACCCTACAGGGGTATTTCAGTA
1 ATTTTACCCTACAGGGGTATTTCAGTA
26674809 ATT
1 ATT
26674812 CTACAACTTA
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 4 0.05
27 65 0.89
28 4 0.05
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
ATTTTACCCTACAGGGGTATTTCAGTA
Found at i:26676037 original size:69 final size:67
Alignment explanation
Indices: 26675960--26676097 Score: 213
Period size: 69 Copynumber: 2.0 Consensus size: 67
26675950 GCTACAAGAT
* * *
26675960 AAACAATTACTTTAATATTAAATTAATATAATATTTATTAAGATAAATATTAAATTAAATTTAAT
1 AAACAATTACTTTAATATTAAATTAATAAAATA-CTATT-AGATAAATATTAAATTAAATTTAAC
26676025 ATTA
64 ATTA
* *
26676029 AAACAATTACTTTAATATTAAATTAATAAAATACTATTAGATAAGTATTAAATTTAATTTAACAT
1 AAACAATTACTTTAATATTAAATTAATAAAATACTATTAGATAAATATTAAATTAAATTTAACAT
26676094 TA
66 TA
26676096 AA
1 AA
26676098 TCTATTAAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
67 28 0.44
68 4 0.06
69 32 0.50
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.41
Consensus pattern (67 bp):
AAACAATTACTTTAATATTAAATTAATAAAATACTATTAGATAAATATTAAATTAAATTTAACAT
TA
Found at i:26680726 original size:47 final size:46
Alignment explanation
Indices: 26680486--26680744 Score: 154
Period size: 47 Copynumber: 5.5 Consensus size: 46
26680476 TTGCCATTGC
* * *
26680486 CATGTCCCAGACATGGTCTTACGCTGGCTATCTC-CATCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGC-A-CTCACCT-TAGGCCGATG
* * **** *
26680534 CCATGTCCCAGACATGGTCTTACACTAGCTCTTGTGTATATGTGCTGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCACTCACCT-TA-G-GCCGATG
* * * * ** *
26680584 TATGTCCTAGAAAT-GTCTTACACTAGCACGAAACTTA-GCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCACTCACCTTAGGCCGATG
* * *
26680628 CATGTCCTAGACA-CGTCTTTCACTGGCTAACATCA--TTGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGC--AC-TCACCTT-AGGCCGATG
*
26680675 CATGTCCCAGACAT-GTCTTACACTGGCACTCACCTCTATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCACTCACCT-TAGGCCGATG
*
26680721 CCATGTCCCAGACGTGGTCTTACA
1 -CATGTCCCAGACATGGTCTTACA
26680745 TGCGCTATCA
Statistics
Matches: 166, Mismatches: 29, Indels: 31
0.73 0.13 0.14
Matches are distributed among these distances:
44 31 0.19
45 4 0.02
46 12 0.07
47 50 0.30
48 25 0.15
49 38 0.23
50 6 0.04
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGGCACTCACCTTAGGCCGATG
Found at i:26680772 original size:94 final size:93
Alignment explanation
Indices: 26680486--26680836 Score: 261
Period size: 94 Copynumber: 3.7 Consensus size: 93
26680476 TTGCCATTGC
* * * *
26680486 CATGTCCCAGACATGGTCTTACGCTGGCTATCTC-CATCGAGGCCGATGCCATGTCCCAGACATG
1 CATGTCCCAGACAT-GTCTTACACTAGC-A-CTCACATCTATGCCGATGCCATGTCCCAGACATG
* * * *
26680550 GTCTTACACTAGCTCTTGTGTATATGTGCTGATG
63 GTCTTACACT-GCGC-TAT-CATATGGGCTGATG
* * * * * * *
26680584 TATGTCCTAGAAATGTCTTACACTAGCAC-GA-AACT-TAGCCGATG-CATGTCCTAGACA-CGT
1 CATGTCCCAGACATGTCTTACACTAGCACTCACATCTAT-GCCGATGCCATGTCCCAGACATGGT
* * *
26680644 CTTTCACTG-GCTAACATCATTGAGGCCGATG
65 CTTACACTGCGCTATCAT-A-TG-GGCTGATG
* * *
26680675 CATGTCCCAGACATGTCTTACACTGGCACTCACCTCTATGCCGATGCCATGTCCCAGACGTGGTC
1 CATGTCCCAGACATGTCTTACACTAGCACTCACATCTATGCCGATGCCATGTCCCAGACATGGTC
26680740 TTACA-TGCGCTATCATGATGCGGCTGATG
66 TTACACTGCGCTATCAT-ATG-GGCTGATG
* * * ** * * *
26680769 CATG-CCTCAAACAGGTCTTACACTAGCCCTCGTATCAATGTCGATGCCATGTCCCAGTCATGGT
1 CATGTCC-CAGACATGTCTTACACTAGCACTCACATCTATGCCGATGCCATGTCCCAGACATGGT
26680833 CTTA
65 CTTA
26680837 TATTGGCTCT
Statistics
Matches: 197, Mismatches: 44, Indels: 28
0.73 0.16 0.10
Matches are distributed among these distances:
88 2 0.01
89 2 0.01
90 3 0.02
91 32 0.16
92 10 0.05
93 23 0.12
94 86 0.44
95 16 0.08
96 1 0.01
97 11 0.06
98 11 0.06
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCACATCTATGCCGATGCCATGTCCCAGACATGGTC
TTACACTGCGCTATCATATGGGCTGATG
Found at i:26682511 original size:40 final size:40
Alignment explanation
Indices: 26682404--26682589 Score: 184
Period size: 40 Copynumber: 4.7 Consensus size: 40
26682394 GCTACTCGTT
* *
26682404 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCA
**
26682444 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
* * *
26682484 TAAATGCCTTCGAATCTTAGTCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
* * * *
26682524 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCA
*
26682565 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGTCCGGA
26682590 CATCATTCGA
Statistics
Matches: 126, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 2 0.02
40 112 0.89
41 12 0.10
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
Found at i:26682583 original size:80 final size:80
Alignment explanation
Indices: 26682404--26682588 Score: 207
Period size: 80 Copynumber: 2.3 Consensus size: 80
26682394 GCTACTCGTT
*
26682404 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
26682469 ATTTAGTAACTCGCA
66 ATATAGTAACTAGCA
* * * * * **
26682484 TAAATGCCTTC-GAATCTTAGTCTGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
*
26682546 CGGATATAGTCACTTAGCA
63 CGGATATAGTAAC-TAGCA
26682565 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
26682589 ACATCATTCG
Statistics
Matches: 85, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
79 5 0.06
80 69 0.81
81 11 0.13
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCA
Found at i:26688044 original size:40 final size:40
Alignment explanation
Indices: 26687989--26688195 Score: 276
Period size: 40 Copynumber: 5.2 Consensus size: 40
26687979 TGAATGATAC
* * *
26687989 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
26688029 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
26688069 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
26688109 -CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
26688148 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
26688188 CC-GGCTAA
1 CCGGGCTAA
26688196 ATTCCGAAGA
Statistics
Matches: 148, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 41 0.28
40 105 0.71
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:26688204 original size:79 final size:79
Alignment explanation
Indices: 26687985--26688195 Score: 323
Period size: 79 Copynumber: 2.7 Consensus size: 79
26687975 CATTTGAATG
* * * *
26687985 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCC-GGCTAAGACCCGAAGGCA
26688050 TTTGTGCGAGTTGCT
65 TTTGTGCGAGTTGCT
* * * *
26688065 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCGGGCTAAGACCCGAAGGCAT
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGCTAAGACCCGAAGGCAT
26688130 TTGTGCGAGTTGCT
66 TTGTGCGAGTTGCT
* *
26688144 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGCTAA
26688196 ATTCCGAAGA
Statistics
Matches: 117, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
79 79 0.68
80 38 0.32
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGCT
Found at i:26696151 original size:40 final size:40
Alignment explanation
Indices: 26696096--26696283 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
26696086 TGAATGATAC
* * *
26696096 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGCTG-TTATAT
*
26696136 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGCTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGCTGTTATAT
* * *
26696176 CCGGGTTAAGACCCAAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGCTGTTATAT
* *
26696216 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGCTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGCTGTTATAT
* *
26696256 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
26696284 TTGTGGTTAT
Statistics
Matches: 132, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 130 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGCTGTTATAT
Done.