Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 95 of 438
Found at i:26696229 original size:80 final size:80
Alignment explanation
Indices: 26696092--26696303 Score: 320
Period size: 80 Copynumber: 2.7 Consensus size: 80
26696082 CATTTGAATG
* * *
26696092 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
26696156 ATTTGTGCGAGCTGCT
65 ATTTGTGCGAGCTGCT
* * *
26696172 ATATCCGGGTTAAGACCCAAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
26696237 TTTGTGCGAGCTGCT
66 TTTGTGCGAGCTGCT
* * *
26696252 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
26696304 ATTCCGAAGA
Statistics
Matches: 119, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
79 6 0.05
80 111 0.93
81 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGCTGCT
Found at i:26702803 original size:44 final size:47
Alignment explanation
Indices: 26702749--26702872 Score: 166
Period size: 44 Copynumber: 2.7 Consensus size: 47
26702739 TATACGTGTT
26702749 GATGCATGTCCCAGACATGTCTTACACTAGCACAAAAC-TT-A-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACAAAACATTGAGGCC
* * * *
26702793 GATGCATGTCCCAGACACGTCTTACACTGGCTA-ACATCATTGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-ACAAAACATTGAGGCC
*
26702840 GATGCATGTCCCAGACATGTCTTACATTAGCAC
1 GATGCATGTCCCAGACATGTCTTACACTAGCAC
26702873 TCACCTCTAC
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
44 32 0.47
45 3 0.04
46 2 0.03
47 31 0.46
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACAAAACATTGAGGCC
Found at i:26703013 original size:94 final size:95
Alignment explanation
Indices: 26702749--26703005 Score: 258
Period size: 94 Copynumber: 2.8 Consensus size: 95
26702739 TATACGTGTT
** ** * *
26702749 GATGCATGTCCCAGACATGTCTTACACTAGCACAAAACT-TA-GCCGATG-CATGTCCCAGACA-
1 GATGCATGTCCCAGACACATCTTACACTAGCACTCACCTCAACGCCGATGCCATGTCCCAGACAT
*
26702810 CGTCTTACACTGGCTAACATCATTGAGGCC
66 GGTCTTACACTGGCTAACATCATTGAGGCC
** * * *
26702840 GATGCATGTCCCAGACATGTCTTACATTAGCACTCACCTCTACACCGATGCCATGTCTCC-GA-A
1 GATGCATGTCCCAGACACATCTTACACTAGCACTCACCTCAACGCCGATGCCATGTC-CCAGACA
* * * *
26702903 GTGGTCTTACACTGGCTATCATGA-TGCGGCT
65 -TGGTCTTACACTGGCTAACATCATTGAGGCC
* * ** *
26702934 GATGCATGTCGCAGACACATCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAGACAT
1 GATGCATGTCCCAGACACATCTTACACTAGCACTCACCTCAACGCCGATGCCATGTCCCAGACAT
26702999 GGTCTTA
66 GGTCTTA
26703006 TATTGGCTCT
Statistics
Matches: 138, Mismatches: 20, Indels: 13
0.81 0.12 0.08
Matches are distributed among these distances:
91 35 0.25
92 2 0.01
93 9 0.07
94 70 0.51
95 22 0.16
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (95 bp):
GATGCATGTCCCAGACACATCTTACACTAGCACTCACCTCAACGCCGATGCCATGTCCCAGACAT
GGTCTTACACTGGCTAACATCATTGAGGCC
Found at i:26704663 original size:93 final size:94
Alignment explanation
Indices: 26704503--26704674 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 94
26704493 GGATGGTTGA
* *** * * *
26704503 GCATCTGAACTCGTTGAGTTGAGTTTTTAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
26704568 TTGAGTCCGAGTTCGAGAGATGTAACTAG
66 TTGAGTCCGAGTTCGAGAGATGTAACTAG
* *
26704597 GCATCCGAGCTCGTTGAGTTGAG-TCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
26704661 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
26704675 ACTTATGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
93 48 0.70
94 21 0.30
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (94 bp):
GCATCCGAACTCGTTGAGTTGAGTTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:26704668 original size:46 final size:46
Alignment explanation
Indices: 26704512--26704682 Score: 166
Period size: 46 Copynumber: 3.7 Consensus size: 46
26704502 AGCATCTGAA
*** * * * *
26704512 CTCGTTGAGTTGAGTTTTTAGTTCACTTATGGATGCGAATGTCTGAA
1 CTCGTTGAGTTGAG-TCCGAGTTCACTTATGGATGCGAACGCCCGAG
*** * * * *
26704559 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-AC-TAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC--CCGAG
26704606 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAG
26704652 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26704683 GCGGGTTACA
Statistics
Matches: 99, Mismatches: 20, Indels: 11
0.76 0.15 0.08
Matches are distributed among these distances:
45 2 0.02
46 48 0.48
47 46 0.46
48 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.32
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAG
Found at i:26707627 original size:15 final size:15
Alignment explanation
Indices: 26707607--26707675 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
26707597 GTATCTTGGG
26707607 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
26707622 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
26707637 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
26707652 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
26707667 TTTCTTTAT
1 TTTCTTTAT
26707676 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:26707676 original size:30 final size:30
Alignment explanation
Indices: 26707598--26707685 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
26707588 CATAGTATCG
* * * *
26707598 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
26707628 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
26707658 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
26707686 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:26709659 original size:46 final size:45
Alignment explanation
Indices: 26709612--26709784 Score: 188
Period size: 46 Copynumber: 3.8 Consensus size: 45
26709602 TTGAGCATCT
*
26709612 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCC
*** * *
26709658 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCC
* *
26709705 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCC
* *
26709751 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26709785 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.61
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.29
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCC
Found at i:26709765 original size:93 final size:93
Alignment explanation
Indices: 26709606--26709776 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
26709596 GGATGGTTGA
* * * *
26709606 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26709671 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
26709699 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
26709764 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
26709777 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:26712053 original size:29 final size:29
Alignment explanation
Indices: 26711997--26712054 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
26711987 TGAAATAAAG
*
26711997 AACGAGCTGAAAGTAAGCTCAATTGAGCTC
1 AACGAGCTGAAAG-AAGCTCAAATGAGCTC
26712027 AACGAGCTGAAACG-AGCTCAAATGAGCT
1 AACGAGCTGAAA-GAAGCTCAAATGAGCT
26712055 AAATTGAGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 13 0.50
30 12 0.46
31 1 0.04
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (29 bp):
AACGAGCTGAAAGAAGCTCAAATGAGCTC
Found at i:26713791 original size:15 final size:17
Alignment explanation
Indices: 26713760--26713792 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
26713750 GAGTCAAGTA
26713760 TAATATTATTGAAATTT
1 TAATATTATTGAAATTT
26713777 TAAT-TTATT-AAATTT
1 TAATATTATTGAAATTT
26713792 T
1 T
26713793 GTTATTTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 5 0.31
17 4 0.25
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
TAATATTATTGAAATTT
Found at i:26727888 original size:15 final size:16
Alignment explanation
Indices: 26727859--26727888 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26727849 TACTTATTGC
26727859 CTTTTTTTATATTATA
1 CTTTTTTTATATTATA
26727875 CTTTTTTTAT-TTAT
1 CTTTTTTTATATTAT
26727889 TATTATTAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (16 bp):
CTTTTTTTATATTATA
Found at i:26734331 original size:27 final size:27
Alignment explanation
Indices: 26734296--26734359 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
26734286 TAGAACACGA
26734296 AATTA-CCCTAAAGAGCAAAATTACCG
1 AATTACCCCTAAAGAGCAAAATTACCG
26734322 AATTACCCCTAAAGAGCAAAATTACCG
1 AATTACCCCTAAAGAGCAAAATTACCG
26734349 -ATATACCCCTA
1 AAT-TACCCCTA
26734360 GGGTTTTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
26 7 0.19
27 29 0.81
ACGTcount: A:0.44, C:0.27, G:0.09, T:0.20
Consensus pattern (27 bp):
AATTACCCCTAAAGAGCAAAATTACCG
Found at i:26740623 original size:20 final size:20
Alignment explanation
Indices: 26740598--26740635 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26740588 GTTTATTCGC
*
26740598 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
26740618 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
26740636 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:26743506 original size:40 final size:40
Alignment explanation
Indices: 26743451--26743700 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
26743441 AACATTGGAA
26743451 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26743491 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26743531 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26743571 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
26743611 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
26743650 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
26743691 CTATATCCGG
1 ATATATCCGG
26743701 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:26751680 original size:40 final size:40
Alignment explanation
Indices: 26751625--26751874 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
26751615 AACATTGGAA
26751625 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26751665 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26751705 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26751745 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
26751785 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
26751824 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
26751865 CTATATCCGG
1 ATATATCCGG
26751875 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:26758398 original size:27 final size:27
Alignment explanation
Indices: 26758363--26758474 Score: 84
Period size: 27 Copynumber: 4.1 Consensus size: 27
26758353 AGCATGGCTG
*
26758363 CCAGAACAGATAAT-GTGACAGAGTCA
1 CCAGAACAGATAATCGTGACAGAGCCA
*
26758389 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATCGTGACAGAGCCA
* * * **
26758417 CCAGGATAGA-AATATGTGGTAGAGCCA
1 CCAGAACAGATAAT-CGTGACAGAGCCA
* * * * *
26758444 CCAGATCACATAATTGTGGCATAGCCA
1 CCAGAACAGATAATCGTGACAGAGCCA
26758471 CCAG
1 CCAG
26758475 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 8 0.11
27 45 0.64
28 17 0.24
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATCGTGACAGAGCCA
Found at i:26758911 original size:16 final size:15
Alignment explanation
Indices: 26758890--26758919 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26758880 AAAATACCAA
26758890 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
26758906 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
26758920 CTGATCTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:26759921 original size:24 final size:24
Alignment explanation
Indices: 26759894--26759964 Score: 133
Period size: 24 Copynumber: 3.0 Consensus size: 24
26759884 CTAGATTTCC
*
26759894 TCCCTTATCTACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
26759918 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
26759942 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
26759965 CTTCTGACAG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.27, C:0.38, G:0.00, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:26761049 original size:26 final size:26
Alignment explanation
Indices: 26761013--26761064 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
26761003 TTTATGATTG
*
26761013 TACAATGTATGTTAACGTGTTTTATA
1 TACAATGTATGTTAACATGTTTTATA
26761039 TACAATGTATGTTAACATGTTTTATA
1 TACAATGTATGTTAACATGTTTTATA
26761065 CACCCAAGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.08, G:0.13, T:0.46
Consensus pattern (26 bp):
TACAATGTATGTTAACATGTTTTATA
Found at i:26766359 original size:24 final size:26
Alignment explanation
Indices: 26766312--26766360 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
26766302 ATATTAAAAG
*
26766312 ATATATATATATAAAATGTATACATA
1 ATATATATATATAAAATATATACATA
*
26766338 ATATA-ATAT-TAAAATATTTACAT
1 ATATATATATATAAAATATATACAT
26766361 CGTATATACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 12 0.57
25 4 0.19
26 5 0.24
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (26 bp):
ATATATATATATAAAATATATACATA
Found at i:26766905 original size:39 final size:39
Alignment explanation
Indices: 26766862--26766940 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
26766852 AAAAAAGCTG
* *
26766862 ATCCCACTCCCCCATGCTACTTTGTTTTATTATTAATTA
1 ATCCCACTCCCCCATGCCACTTTATTTTATTATTAATTA
26766901 ATCCCACTCCCCCATGCCACTTTATTTTATTATTAATTA
1 ATCCCACTCCCCCATGCCACTTTATTTTATTATTAATTA
26766940 A
1 A
26766941 AACCATATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.25, C:0.29, G:0.04, T:0.42
Consensus pattern (39 bp):
ATCCCACTCCCCCATGCCACTTTATTTTATTATTAATTA
Found at i:26768313 original size:44 final size:44
Alignment explanation
Indices: 26768250--26768691 Score: 616
Period size: 44 Copynumber: 10.0 Consensus size: 44
26768240 AGGAACACCG
* * *** * * *
26768250 ATCTGTTATTTTCGATCTGCTCTCTGCCAAAATAGAGATGCTAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
26768294 ATCTGTGT-TCTTCGATCTGCTCTCTGCCACTACAGAGACGCCAA
1 ATCTGT-TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
*
26768338 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTATAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
26768382 ATCTATTATCTTCGATCTGCTCTCCGCCGCTATAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
26768426 ATCTGTTATCTTAGATCTGCTCTCCGCCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
*
26768470 ATCTGTTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * *
26768514 ATCTGTTATCTTAGATCTACTCTCCGTCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
26768558 ATCTGCTATCTTCGATCTGCTCTCCGTCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * *
26768602 ATCTGTTATCTTCGATCTGCTCTCTGCCACTATAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * * *
26768646 ATCTATTATCTTCGATCTGCTCTCTGCCACTACAGAGACACCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
26768690 AT
1 AT
26768692 TATCTTGGAT
Statistics
Matches: 366, Mismatches: 30, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
43 1 0.00
44 364 0.99
45 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.30
Consensus pattern (44 bp):
ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
Found at i:26769013 original size:60 final size:64
Alignment explanation
Indices: 26768899--26769020 Score: 164
Period size: 60 Copynumber: 2.0 Consensus size: 64
26768889 TCATGTATCC
*
26768899 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGTATCAAATACTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATACTCCTAACTAAATGTG
* **
26768963 ATGCTTTATGTCAAAT-ATTAGGATG-T-T-A-TGAAATGAATCAAATGTTCCTAACTAAATG
1 ATGC-TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATACTCCTAACTAAATG
26769021 AATGGTTATG
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
60 27 0.51
61 1 0.02
62 1 0.02
63 1 0.02
64 13 0.25
65 10 0.19
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATACTCCTAACTAAATGTG
Found at i:26777904 original size:40 final size:40
Alignment explanation
Indices: 26777860--26778101 Score: 335
Period size: 40 Copynumber: 6.0 Consensus size: 40
26777850 GGATTTAACT
* * *
26777860 GGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGCCC
1 GGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
26777900 GGATATAGTAACTCGCACCAATGCCTTTGGGACTTAGCTC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
26777940 GGATATAGCAACTCGCACAAATGCCTTCGGGAATTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
26777980 GGATATAGCAACTCGCACAAATGCCTTTGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
26778020 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
26778060 GGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCC
1 GGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
26778100 GG
1 GG
26778102 TTATCATCCA
Statistics
Matches: 183, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 181 0.99
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:26786168 original size:40 final size:40
Alignment explanation
Indices: 26786098--26786355 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
26786088 AAGCCAAGTA
* * * *
26786098 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
26786137 CCTTCGGGACATAACCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
26786177 CCTTCGGGACTTAGCCTGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26786217 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26786257 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
26786297 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
26786337 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
26786356 TTATCATCCA
Statistics
Matches: 199, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.07
40 186 0.93
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:26792765 original size:17 final size:17
Alignment explanation
Indices: 26792743--26792785 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
26792733 AAAAATATAA
26792743 TAATAATATAATAGTAG
1 TAATAATATAATAGTAG
** *
26792760 TAATAACGTAATAGTAT
1 TAATAATATAATAGTAG
26792777 TAA-AATATA
1 TAATAATATA
26792786 CGATATATAA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.35
Consensus pattern (17 bp):
TAATAATATAATAGTAG
Found at i:26793602 original size:39 final size:39
Alignment explanation
Indices: 26793559--26793639 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
26793549 GCAAAAAAGC
*
26793559 TAATCCCACTCCCCCATGCTACTTTGTTTTATTATTAAT
1 TAATCCCACTCCCCCATGCCACTTTGTTTTATTATTAAT
26793598 TAATCCCACTCCCCCATGCCACTTTGTTTTATTATTAAT
1 TAATCCCACTCCCCCATGCCACTTTGTTTTATTATTAAT
26793637 TAA
1 TAA
26793640 AACCATATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.25, C:0.28, G:0.05, T:0.42
Consensus pattern (39 bp):
TAATCCCACTCCCCCATGCCACTTTGTTTTATTATTAAT
Found at i:26797669 original size:15 final size:15
Alignment explanation
Indices: 26797640--26797680 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
26797630 TTTTAGCTCA
26797640 AGAAGTTAAAAAATTT
1 AGAA-TTAAAAAATTT
*
26797656 AGAATTAAAGAATTT
1 AGAATTAAAAAATTT
*
26797671 AGAAATAAAA
1 AGAATTAAAA
26797681 CCATAGCTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 18 0.82
16 4 0.18
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (15 bp):
AGAATTAAAAAATTT
Found at i:26802759 original size:30 final size:30
Alignment explanation
Indices: 26802725--26802784 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
26802715 ATTTAATACG
*
26802725 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
26802755 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
26802785 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:26813843 original size:19 final size:19
Alignment explanation
Indices: 26813797--26813843 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
26813787 TTTGGAGAGT
* *
26813797 CACATGCCCGTGTGGGTTT
1 CACATGCCCGTGTGGCTTG
*
26813816 CACAAGCCCGTGTGGCTTG
1 CACATGCCCGTGTGGCTTG
*
26813835 GACATGCCC
1 CACATGCCC
26813844 ATGTCTCCAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.15, C:0.32, G:0.30, T:0.23
Consensus pattern (19 bp):
CACATGCCCGTGTGGCTTG
Found at i:26817062 original size:25 final size:25
Alignment explanation
Indices: 26817033--26817080 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26817023 TTATAATATG
* * *
26817033 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
26817058 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
26817081 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:26817149 original size:20 final size:20
Alignment explanation
Indices: 26817124--26817182 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
26817114 TAAATATGGT
26817124 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
26817144 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
26817164 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
26817183 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:26817164 original size:11 final size:11
Alignment explanation
Indices: 26817128--26817182 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
26817118 TATGGTATGT
26817128 ATGATATGCAC
1 ATGATATGCAC
* *
26817139 ATGAAATG--T
1 ATGATATGCAC
26817148 ATGATATGCAC
1 ATGATATGCAC
*
26817159 ATGATATG--T
1 ATGATATGCAC
26817168 ATGATATGCAC
1 ATGATATGCAC
26817179 ATGA
1 ATGA
26817183 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:26817260 original size:24 final size:24
Alignment explanation
Indices: 26817233--26817351 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
26817223 GAGGAAGTGA
*
26817233 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
26817257 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
26817280 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
26817304 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26817328 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
26817352 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:26817302 original size:47 final size:48
Alignment explanation
Indices: 26817233--26817351 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
26817223 GAGGAAGTGA
26817233 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
26817280 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
26817328 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
26817352 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:26817578 original size:31 final size:31
Alignment explanation
Indices: 26817543--26817627 Score: 120
Period size: 31 Copynumber: 2.7 Consensus size: 31
26817533 CGTTTACAGT
*
26817543 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAACATGA
*
26817574 AAAGGCTTCGGCCCAGGAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTAATATGAAACATGA
26817605 AAAGGGCTAT-GGCCCAGT-ATATG
1 AAA-GGCT-TCGGCCCAGTAATATG
26817628 TTGAGATTGG
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
31 37 0.76
32 11 0.22
33 1 0.02
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAACATGA
Found at i:26821708 original size:25 final size:25
Alignment explanation
Indices: 26821662--26821709 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
26821652 TTATAATATG
* * * *
26821662 AAAATGACCGTTTTGCCTCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
26821687 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
26821710 GTTTATGTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:26821778 original size:20 final size:20
Alignment explanation
Indices: 26821753--26821811 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
26821743 TAAATATGGT
26821753 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
26821773 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
26821793 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
26821812 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:26821793 original size:11 final size:11
Alignment explanation
Indices: 26821757--26821811 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
26821747 TATGGTATGT
26821757 ATGATATGCAC
1 ATGATATGCAC
* *
26821768 ATGAAATG--T
1 ATGATATGCAC
26821777 ATGATATGCAC
1 ATGATATGCAC
*
26821788 ATGATATG--T
1 ATGATATGCAC
26821797 ATGATATGCAC
1 ATGATATGCAC
26821808 ATGA
1 ATGA
26821812 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:26821889 original size:24 final size:24
Alignment explanation
Indices: 26821862--26821980 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
26821852 GAGGAAGTGA
*
26821862 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
26821886 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
26821909 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* * *
26821933 GAAAGGGCTTTTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26821957 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
26821981 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
23 22 0.26
24 52 0.62
25 10 0.12
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:26821931 original size:47 final size:48
Alignment explanation
Indices: 26821862--26821980 Score: 161
Period size: 47 Copynumber: 2.5 Consensus size: 48
26821852 GAGGAAGTGA
26821862 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** * *
26821909 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
26821957 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
26821981 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
47 42 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:26822206 original size:31 final size:31
Alignment explanation
Indices: 26822171--26822234 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
26822161 CATTTACAGT
26822171 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
26822202 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
26822233 AA
1 AA
26822235 CATGGAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:26825570 original size:13 final size:14
Alignment explanation
Indices: 26825552--26825584 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
26825542 AATTAAAAAC
*
26825552 AAACATATCAATA-
1 AAACATATAAATAT
26825565 AAACATATAAATAT
1 AAACATATAAATAT
26825579 AAACAT
1 AAACAT
26825585 GGTCGAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (14 bp):
AAACATATAAATAT
Found at i:26827138 original size:54 final size:55
Alignment explanation
Indices: 26827063--26827363 Score: 198
Period size: 56 Copynumber: 5.7 Consensus size: 55
26827053 CCCCAGATAG
* * * * *
26827063 GGTCTTACTCGTAAACGCATATCAGAATCACCTATC-ATGCCAAT-TATTAAACGT
1 GGTCTTACTCGCACACACATATC-GAATCACATATCGATGCCAATGTATTAAACAT
* * *
26827117 GGTCTTACTTGC-CTACACATATTGGAATCACATATCGATGCCAATGTATTACACAT
1 GGTCTTACTCGCAC-ACACATA-TCGAATCACATATCGATGCCAATGTATTAAACAT
* *
26827173 TGTCTTACTCGCACACACATATCGAAATCACATATCGATGCCAATGTATTAGACCA-
1 GGTCTTACTCGCACACACATATCG-AATCACATATCGATGCCAATGTATTA-AACAT
* *
26827229 ---C-TA-TCAG-A-ATCACATATCG------AT------GCCAACGTATTAAACGT
1 GGTCTTACTC-GCACA-CACATATCGAATCACATATCGATGCCAATGTATTAAACAT
* * * *
26827267 GGTCTTACTCGCACACACATATCAGAATCACATATTGTTGCCAACGTATTAAACTT
1 GGTCTTACTCGCACACACATATC-GAATCACATATCGATGCCAATGTATTAAACAT
* *
26827323 GGTTTTACTCGCACACACGTATCGAAATCACATATCGATGC
1 GGTCTTACTCGCACACACATATCG-AATCACATATCGATGC
26827364 AACGTCCAAG
Statistics
Matches: 195, Mismatches: 21, Indels: 60
0.71 0.08 0.22
Matches are distributed among these distances:
37 2 0.01
38 11 0.06
41 1 0.01
42 3 0.02
43 11 0.06
44 4 0.02
50 3 0.02
51 12 0.06
52 3 0.02
53 1 0.01
54 27 0.14
55 12 0.06
56 102 0.52
57 3 0.02
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.29
Consensus pattern (55 bp):
GGTCTTACTCGCACACACATATCGAATCACATATCGATGCCAATGTATTAAACAT
Found at i:26827285 original size:150 final size:148
Alignment explanation
Indices: 26827082--26827363 Score: 415
Period size: 150 Copynumber: 1.9 Consensus size: 148
26827072 CGTAAACGCA
* * * **
26827082 TATCAGAATCACCTATCATGCCAATTATTAAACGTGGTCTTACTTGCCTACACATATTGGAATCA
1 TATCAGAATCACATATCATGCCAAGTATTAAACGTGGTCTTACTCGCCTACACATATCAGAATCA
* *
26827147 CATATCGATGCCAATGTATTACACATT-GTCTTACTCGCACACACATATCGAAATCACATATCGA
66 CATATCGATGCCAACGTATTAAAC-TTGGTCTTACTCGCACACACATATCGAAATCACATATCGA
26827211 TGCCAATGTATTAGACCAC
130 TGCCAATGTATTAGACCAC
26827230 TATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCAC-ACACATATCAGAA
1 TATCAGAATCACATATC-ATGCCAA-GTATTAAACGTGGTCTTACTCGC-CTACACATATCAGAA
* * * *
26827294 TCACATATTGTTGCCAACGTATTAAACTTGGTTTTACTCGCACACACGTATCGAAATCACATATC
63 TCACATATCGATGCCAACGTATTAAACTTGGTCTTACTCGCACACACATATCGAAATCACATATC
26827359 GATGC
128 GATGC
26827364 AACGTCCAAG
Statistics
Matches: 119, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
148 16 0.13
149 9 0.08
150 93 0.78
151 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (148 bp):
TATCAGAATCACATATCATGCCAAGTATTAAACGTGGTCTTACTCGCCTACACATATCAGAATCA
CATATCGATGCCAACGTATTAAACTTGGTCTTACTCGCACACACATATCGAAATCACATATCGAT
GCCAATGTATTAGACCAC
Found at i:26827295 original size:56 final size:56
Alignment explanation
Indices: 26827230--26827385 Score: 210
Period size: 56 Copynumber: 2.8 Consensus size: 56
26827220 ATTAGACCAC
26827230 TATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACACA
1 TATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACACA
* * * * *
26827286 TATCAGAATCACATATTGTTGCCAACGTATTAAACTTGGTTTTACTCGCACACACG
1 TATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACACA
**
26827342 TATC-GAAATCACATATCGATG-CAACGT-CCAAGACGTGGTCTTAC
1 TATCAG-AATCACATATCGATGCCAACGTATTAA-ACGTGGTCTTAC
26827386 ACGTAATACA
Statistics
Matches: 87, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
54 2 0.02
55 17 0.20
56 68 0.78
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (56 bp):
TATCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACACA
Found at i:26827309 original size:94 final size:94
Alignment explanation
Indices: 26827141--26827317 Score: 275
Period size: 94 Copynumber: 1.9 Consensus size: 94
26827131 ACACATATTG
* * *
26827141 GAATCACATATCGATGCCAATGTATTACACATTGTCTTACTCGCACACACATATCGAAATCACAT
1 GAATCACATATCGATGCCAACGTATTAAACATGGTCTTACTCGCACACACATATCGAAATCACAT
*
26827206 ATCGATGCCAATGTATTAGACCACTATCA
66 ATCGATGCCAACGTATTAGACCACTATCA
*
26827235 GAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACACATATC-AGAATCACA
1 GAATCACATATCGATGCCAACGTATTAAACATGGTCTTACTCGCACACACATATCGA-AATCACA
* *
26827299 TATTGTTGCCAACGTATTA
65 TATCGATGCCAACGTATTA
26827318 AACTTGGTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
93 1 0.01
94 74 0.99
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (94 bp):
GAATCACATATCGATGCCAACGTATTAAACATGGTCTTACTCGCACACACATATCGAAATCACAT
ATCGATGCCAACGTATTAGACCACTATCA
Found at i:26827469 original size:43 final size:42
Alignment explanation
Indices: 26827348--26827485 Score: 199
Period size: 43 Copynumber: 3.3 Consensus size: 42
26827338 CACGTATCGA
26827348 AATCACATATCGATG-CAACGTCCAAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAACGTCC-AGACGTGGTCTTACACGT
26827390 AAT-ACATATCGATGCCAACGTCGCAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAACGTC-CAGACGTGGTCTTACACGT
* * *
26827432 AATCACATATCGATGCCAATGTCCAGGATGTGCTCTTACACGT
1 AATCACATATCGATGCCAACGTCCA-GACGTGGTCTTACACGT
*
26827475 AATCACGTATC
1 AATCACATATC
26827486 AAAAATCCTA
Statistics
Matches: 88, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
41 11 0.12
42 33 0.38
43 44 0.50
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (42 bp):
AATCACATATCGATGCCAACGTCCAGACGTGGTCTTACACGT
Found at i:26831890 original size:13 final size:14
Alignment explanation
Indices: 26831872--26831904 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
26831862 AATAAAAAAC
*
26831872 AAACATATCAATA-
1 AAACATATAAATAT
26831885 AAACATATAAATAT
1 AAACATATAAATAT
26831899 AAACAT
1 AAACAT
26831905 GGTCGAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (14 bp):
AAACATATAAATAT
Found at i:26833468 original size:56 final size:56
Alignment explanation
Indices: 26833403--26833809 Score: 495
Period size: 56 Copynumber: 7.5 Consensus size: 56
26833393 CTACTCATAA
* *
26833403 ACACATATCGAAATCACCTATCGATGCCAACGTATTAAACGTGGTCTTACTCGCAC
1 ACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCAC
* * *
26833459 ACACTTATCGGAATCACCTATCGATGCCAACGTATTAAATGTGGTCTTACTCGCAC
1 ACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCAC
* * * *
26833515 ACATATATCGGAATCACATATCGATGCCAACGTATTAAATGCGGTCTTTCTCGCAC
1 ACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCAC
* *
26833571 ACACATATTGGAATCACATATCGATACCAACGTATTAAACGTGGTCTTACTCGCAC
1 ACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCAC
* * *
26833627 ACACATATCGGAATTACATA-CTGATGCCAAC--A-T--ACGTGGTCTTACTAGCAG
1 ACACATATCGGAATCACATATC-GATGCCAACGTATTAAACGTGGTCTTACTCGCAC
** * *
26833678 ACACATATCAAAATCACATATCAATGCCAACATATTAAA--T-GTCTTACT--CAC
1 ACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCAC
* * *
26833729 ACACATATCGGAATCACATATCAATGCCAACATATTAAA--T-GACTTACT--CAC
1 ACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCAC
*
26833780 ACACATATCAGAATCACATATCGATGCCAA
1 ACACATATCGGAATCACATATCGATGCCAA
26833810 TGTCCCAGAC
Statistics
Matches: 315, Mismatches: 29, Indels: 19
0.87 0.08 0.05
Matches are distributed among these distances:
51 119 0.38
52 1 0.00
53 10 0.03
54 3 0.01
55 1 0.00
56 181 0.57
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (56 bp):
ACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCAC
Found at i:26833899 original size:42 final size:43
Alignment explanation
Indices: 26833791--26833963 Score: 251
Period size: 43 Copynumber: 4.0 Consensus size: 43
26833781 CACATATCAG
26833791 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACATGT
1 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACATGT
* * * *
26833834 AATCACATATCAACGCCAATGTCCCAGACATGGTCTTACA-CT
1 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACATGT
*
26833876 AATCACATATCGATG-CAATTGTCCCAGGCGTGGTCTTACATGT
1 AATCACATATCGATGCCAA-TGTCCCAGACGTGGTCTTACATGT
* * *
26833919 AATCACATATCGATGCCAACGTTCCAGATGTGGTCTTACATGT
1 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACATGT
26833962 AA
1 AA
26833964 CACCCCAAAC
Statistics
Matches: 114, Mismatches: 13, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
41 3 0.03
42 33 0.29
43 75 0.66
44 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28
Consensus pattern (43 bp):
AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACATGT
Found at i:26833937 original size:85 final size:85
Alignment explanation
Indices: 26833791--26833958 Score: 257
Period size: 85 Copynumber: 2.0 Consensus size: 85
26833781 CACATATCAG
*
26833791 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATCAACGCCAATGT
1 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATCAACGCCAACGT
26833856 CCCAGACATGGTCTTACACT
66 CCCAGACATGGTCTTACACT
* * *
26833876 AATCACATATCGATG-CAATTGTCCCAGGCGTGGTCTTACATGTAATCACATATCGATGCCAACG
1 AATCACATATCGATGCCAA-TGTCCCAGACGTGGTCTTACATGTAATCACATATCAACGCCAACG
* **
26833940 TTCCAGATGTGGTCTTACA
65 TCCCAGACATGGTCTTACA
26833959 TGTAACACCC
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
84 3 0.04
85 72 0.96
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (85 bp):
AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATCAACGCCAACGT
CCCAGACATGGTCTTACACT
Found at i:26836940 original size:45 final size:45
Alignment explanation
Indices: 26836874--26836961 Score: 108
Period size: 45 Copynumber: 2.0 Consensus size: 45
26836864 TCTAATAATA
* *
26836874 AAAATTTCAAATATCAATAATACAGTAAATA-A-TAATAATTTTCAT
1 AAAATTTAAAATATCAATAATA-A-TAAATACAGTAAAAATTTTCAT
**
26836919 AAAATTTAAAATATCCGTAATAATAAATACAGTAAAAATTTTC
1 AAAATTTAAAATATCAATAATAATAAATACAGTAAAAATTTTC
26836962 TAGTGGTAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
43 6 0.16
44 2 0.05
45 29 0.78
ACGTcount: A:0.53, C:0.09, G:0.03, T:0.34
Consensus pattern (45 bp):
AAAATTTAAAATATCAATAATAATAAATACAGTAAAAATTTTCAT
Found at i:26842769 original size:27 final size:27
Alignment explanation
Indices: 26842710--26842888 Score: 245
Period size: 27 Copynumber: 6.7 Consensus size: 27
26842700 TTTGGTTTAC
26842710 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* ** * *
26842736 AAAATTACTAAAATACCATTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
26842763 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
26842790 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
26842817 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
26842844 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
26842871 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
26842889 TCGACCTGTA
Statistics
Matches: 136, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
26 14 0.10
27 121 0.89
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:26842899 original size:81 final size:81
Alignment explanation
Indices: 26842710--26842942 Score: 233
Period size: 81 Copynumber: 2.9 Consensus size: 81
26842700 TTTGGTTTAC
* * * * *
26842710 AAAATTACCAAAATA-CCC-TGCTTTGTAAAATTA-CTAAAATACCATTGGTTTATAAAATTACC
1 AAAATTACCAAAATACCCCGAGC-CTGTAAAATTATC-AAAATACCCTTAGTTTGTAAAATTACC
*
26842772 AAAATACCCCTAGTTTGT
64 AAAATACCCCTAATTTGT
* ** *
26842790 AAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATACCCTTAGTTTGTAAAATTACCAA
26842855 AATACCCCTAATTTGT
66 AATACCCCTAATTTGT
* ** ** * *
26842871 GAAATTACTGAAATACCCTCGA-CCTGTAAAATTATTGAAATA-CCTTCGACTTGTAAAATTACC
1 AAAATTACCAAAATACCC-CGAGCCTGTAAAATTATCAAAATACCCTTAG-TTTGTAAAATTACC
*
26842934 AAAGTACCC
64 AAAATACCC
26842943 TCGATTTATA
Statistics
Matches: 129, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
80 19 0.15
81 106 0.82
82 4 0.03
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATACCCTTAGTTTGTAAAATTACCAA
AATACCCCTAATTTGT
Found at i:26842902 original size:27 final size:27
Alignment explanation
Indices: 26842872--26842946 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
26842862 CTAATTTGTG
26842872 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* * *
26842899 AAATTATTGAAATACCTTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
26842926 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
26842947 TTTATAGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.07
27 38 0.93
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.28
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:26842958 original size:54 final size:54
Alignment explanation
Indices: 26842762--26843015 Score: 140
Period size: 54 Copynumber: 4.7 Consensus size: 54
26842752 CATTGGTTTA
* * * * * * *
26842762 TAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTCGA-CTTG
* * * * * * * *
26842816 TAAAATTATCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCC-CTAATTTG
1 TAAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTC-GACTTG
* * ** * * ** *
26842870 TGAAATTACTGAAA-TACCCTCGACCTGTAAAATTATTGAAATACCTTCGACTTG
1 TAAAATTAC-CAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTG
*** *
26842924 TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTG
1 TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTG
****
26842978 TAAAATTACCGTTTTACCCTCGATTTATAGAATTACCG
1 TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCG
26843016 TTTTACCTTC
Statistics
Matches: 164, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
53 3 0.02
54 154 0.94
55 7 0.04
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (54 bp):
TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTG
Found at i:26843284 original size:27 final size:27
Alignment explanation
Indices: 26842938--26843283 Score: 426
Period size: 27 Copynumber: 12.8 Consensus size: 27
26842928 ATTACCAAAG
*
26842938 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** *
26842965 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
26842992 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
26843019 TACCTTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
26843046 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
26843073 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
26843100 TACCC-CAGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
26843127 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
26843154 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
26843181 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
26843208 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
26843235 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
26843262 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
26843284 TAAAATACCT
Statistics
Matches: 285, Mismatches: 32, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
26 1 0.00
27 283 0.99
28 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:26843320 original size:81 final size:81
Alignment explanation
Indices: 26842965--26843327 Score: 212
Period size: 81 Copynumber: 4.5 Consensus size: 81
26842955 ATTACCGTTT
* ** *** * * * * *
26842965 TACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCTTCAATT
1 TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
* ***
26843030 TACAGAATTACTATTT
66 TACAAAATTACTAAAA
* * * *** * *
26843046 TACCCTCGATTTATAGAATTACCGTTTTACCC-CTAATTTACATAATTACCATTTTACCC-CAGA
1 TACCCTTGATTTACAAAATTACCGCAATACCCTC-GATTTACAAAATTACCATTTTACCCTC-GA
* **
26843109 TTTACATAATTATCGT--TT
64 TTTACAAAATTA-C-TAAAA
* * *** *
26843127 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
* * ***
26843192 TATAGAATTACTATTT
66 TACAAAATTACTAAAA
* *** * **
26843208 TACCCTTGATTTACAAAATTACTGTTTTACCCTTGATTTACAAAATTACTGTTTTACCCTCGATT
1 TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
26843273 TACAAAATTACTAAAA
66 TACAAAATTACTAAAA
* * *** *
26843289 TACCTTTGGTTTGTGAAATTACCGCAATACCCTCAATTT
1 TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTT
26843328 GTAAAACTAC
Statistics
Matches: 237, Mismatches: 37, Indels: 16
0.82 0.13 0.06
Matches are distributed among these distances:
79 1 0.00
80 3 0.01
81 229 0.97
82 3 0.01
83 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (81 bp):
TACCCTTGATTTACAAAATTACCGCAATACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
TACAAAATTACTAAAA
Found at i:26844535 original size:25 final size:25
Alignment explanation
Indices: 26844506--26844553 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26844496 TTATAATATG
* * *
26844506 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
26844531 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
26844554 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:26844622 original size:20 final size:20
Alignment explanation
Indices: 26844597--26844655 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
26844587 TAAATATGGT
26844597 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
26844617 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
26844637 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
26844656 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:26844733 original size:24 final size:24
Alignment explanation
Indices: 26844706--26844848 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
26844696 GAGGAAGTGA
*
26844706 AAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
26844730 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
26844754 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
26844777 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
26844801 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
26844825 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
26844849 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:26844798 original size:47 final size:47
Alignment explanation
Indices: 26844706--26844848 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
26844696 GAGGAAGTGA
*
26844706 AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
26844754 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
26844801 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
26844849 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
47 43 0.49
48 33 0.38
49 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:26844822 original size:71 final size:72
Alignment explanation
Indices: 26844706--26844849 Score: 211
Period size: 71 Copynumber: 2.0 Consensus size: 72
26844696 GAGGAAGTGA
* *
26844706 AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
26844769 CCAGTTAT
65 CCAGTTAT
** * *
26844777 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
26844842 CAGTTAT
66 CAGTTAT
26844849 A
1 A
26844850 TGATAAAGCA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 53 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:26845075 original size:31 final size:31
Alignment explanation
Indices: 26845040--26845134 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
26845030 CGTTTACAGT
26845040 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
26845071 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
26845102 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
26845133 AA
1 AA
26845135 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:26861020 original size:29 final size:29
Alignment explanation
Indices: 26860958--26861060 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
26860948 GTGACGAGAT
* * *
26860958 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
26860987 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
26861016 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
26861045 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26861061 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:26869038 original size:29 final size:29
Alignment explanation
Indices: 26868976--26869078 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
26868966 GTGACGAGAT
* * *
26868976 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
26869005 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
26869034 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
26869063 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26869079 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:26877181 original size:24 final size:24
Alignment explanation
Indices: 26877149--26877200 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
26877139 AAAATAGAGT
26877149 AGATAATTTGCTAATAATCCTCAA
1 AGATAATTTGCTAATAATCCTCAA
26877173 AGATAATTTGCTAATAATCCTCAA
1 AGATAATTTGCTAATAATCCTCAA
26877197 AGAT
1 AGAT
26877201 CTCTAAGCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (24 bp):
AGATAATTTGCTAATAATCCTCAA
Found at i:26880748 original size:40 final size:40
Alignment explanation
Indices: 26880694--26880788 Score: 138
Period size: 40 Copynumber: 2.4 Consensus size: 40
26880684 CTATCTCATT
26880694 ATCGCACACTTAGTGCC-TCATATAGCCGAAGCTATTCCAA
1 ATCGCACACTTAGTGCCAT-ATATAGCCGAAGCTATTCCAA
* * * *
26880734 CTCTCACACTTAGTGCCATATGTAGCCGAAGCTATTTCAA
1 ATCGCACACTTAGTGCCATATATAGCCGAAGCTATTCCAA
26880774 ATCGCACACTTAGTG
1 ATCGCACACTTAGTG
26880789 TCGAACTTAG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
40 47 0.98
41 1 0.02
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27
Consensus pattern (40 bp):
ATCGCACACTTAGTGCCATATATAGCCGAAGCTATTCCAA
Found at i:26883171 original size:25 final size:25
Alignment explanation
Indices: 26883143--26883193 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
26883133 TTGAAATACA
26883143 ACCTTTTCTTTAAGTGAACCTTTGG
1 ACCTTTTCTTTAAGTGAACCTTTGG
26883168 ACCTTTTCTTTAAGTGAACCTTTGG
1 ACCTTTTCTTTAAGTGAACCTTTGG
26883193 A
1 A
26883194 TCACCCCCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.43
Consensus pattern (25 bp):
ACCTTTTCTTTAAGTGAACCTTTGG
Found at i:26886293 original size:37 final size:37
Alignment explanation
Indices: 26886243--26886370 Score: 238
Period size: 37 Copynumber: 3.4 Consensus size: 37
26886233 TTATTACGAA
26886243 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
26886280 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
26886317 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
26886354 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
26886371 TTTCCAAGTT
Statistics
Matches: 89, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
37 84 0.94
38 5 0.06
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:26886468 original size:48 final size:48
Alignment explanation
Indices: 26886410--26886551 Score: 248
Period size: 48 Copynumber: 3.0 Consensus size: 48
26886400 TGTTACAACA
26886410 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
26886458 TTCACTTTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
26886506 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
26886552 TGTAACACCC
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:26888205 original size:48 final size:48
Alignment explanation
Indices: 26888134--26888345 Score: 388
Period size: 48 Copynumber: 4.4 Consensus size: 48
26888124 TTTTGGGCTG
26888134 TCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
26888182 TCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
26888230 TCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
** * *
26888278 TCTTATATATGTTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
26888326 TCACACATATATTTCACATT
1 TCACACATATATTTCACATT
26888346 CATCACATCG
Statistics
Matches: 156, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 156 1.00
ACGTcount: A:0.33, C:0.26, G:0.06, T:0.35
Consensus pattern (48 bp):
TCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
Found at i:26888377 original size:42 final size:43
Alignment explanation
Indices: 26888329--26888429 Score: 132
Period size: 49 Copynumber: 2.2 Consensus size: 43
26888319 ATACATATCA
26888329 CACATATA-TTTCACATTCATCACATCGACCATTAGGCCTTAT
1 CACATATACTTTCACATTCATCACATCGACCATTAGGCCTTAT
*
26888371 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CAC----ATAT--ACTTTCACATTCATCACATCGACCATTAGGCCTTAT
26888420 CACATATACT
1 CACATATACT
26888430 ATTATGTACA
Statistics
Matches: 51, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
42 3 0.06
43 3 0.06
45 4 0.08
46 4 0.08
48 1 0.02
49 36 0.71
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.33
Consensus pattern (43 bp):
CACATATACTTTCACATTCATCACATCGACCATTAGGCCTTAT
Found at i:26905208 original size:21 final size:20
Alignment explanation
Indices: 26905177--26905216 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
26905167 TTGAGAAAGA
*
26905177 AGAGAGAATGATGATGGATG
1 AGAGAGAATGATGAGGGATG
26905197 AGAGATGAATGATGAGGGAT
1 AGAGA-GAATGATGAGGGAT
26905217 CAAATGAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (20 bp):
AGAGAGAATGATGAGGGATG
Found at i:26908199 original size:40 final size:40
Alignment explanation
Indices: 26908104--26908363 Score: 248
Period size: 40 Copynumber: 6.5 Consensus size: 40
26908094 TATTCGAATG
*
26908104 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* ** * *
26908145 ATAACCGGATTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
26908185 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
26908225 ATATCCGGGCTAA-AACCTGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCC-GAAGGCATTTGTGCTAGTGACT
* *
26908265 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * * * *
26908305 ACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGA-CT
26908344 ATATCC-GGCTAA-ATCCGAAG
1 ATATCCGGGCTAAGATCCGAAG
26908364 ATTACTTGAG
Statistics
Matches: 182, Mismatches: 29, Indels: 20
0.79 0.13 0.09
Matches are distributed among these distances:
37 7 0.04
38 7 0.04
39 17 0.09
40 120 0.66
41 30 0.16
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:26908318 original size:120 final size:121
Alignment explanation
Indices: 26908104--26908328 Score: 294
Period size: 120 Copynumber: 1.9 Consensus size: 121
26908094 TATTCGAATG
** * * *
26908104 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGATTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * *
26908169 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* * *
26908225 ATATCCGGGCTAAAACCTGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* *
26908288 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGC
26908329 CTTGTGCAAG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 3 0.03
120 56 0.63
121 30 0.34
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:26916318 original size:40 final size:40
Alignment explanation
Indices: 26916224--26916448 Score: 249
Period size: 40 Copynumber: 5.6 Consensus size: 40
26916214 TATTCGAATG
*
26916224 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
26916265 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
26916305 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
26916345 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
26916385 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * *
26916425 ACATCCAGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
26916449 CTTGTGCAAG
Statistics
Matches: 157, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 1 0.01
40 126 0.80
41 29 0.18
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:26916404 original size:80 final size:80
Alignment explanation
Indices: 26916224--26916484 Score: 303
Period size: 80 Copynumber: 3.3 Consensus size: 80
26916214 TATTCGAATG
* * * *
26916224 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
26916289 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
26916305 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
26916370 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * *
26916385 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCAGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
26916450 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
26916464 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
26916485 ATTACTTGAG
Statistics
Matches: 154, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 94 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:26916440 original size:120 final size:120
Alignment explanation
Indices: 26916224--26916484 Score: 316
Period size: 120 Copynumber: 2.2 Consensus size: 120
26916214 TATTCGAATG
* * *
26916224 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * * *
26916289 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCAGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
26916345 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
26916408 CATTTATGCTAG-TGACCACATCCAGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCAGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
26916464 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
26916485 ATTACTTGAG
Statistics
Matches: 121, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
118 15 0.12
119 19 0.16
120 56 0.46
121 31 0.26
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCAGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:26920454 original size:39 final size:40
Alignment explanation
Indices: 26920391--26920482 Score: 116
Period size: 39 Copynumber: 2.4 Consensus size: 40
26920381 ACGATACTCT
* *
26920391 TGATAGCACATTCGTGCTCATGTTA-GCACTACGATCCCC
1 TGATTGCACATTCGTGCCCATGTTATGCACTACGATCCCC
* * *
26920430 TGATTGCACATTTGTGCCCCTGTTATGCACTACGATGCCC
1 TGATTGCACATTCGTGCCCATGTTATGCACTACGATCCCC
*
26920470 TGTTTGCAC-TTCG
1 TGATTGCACATTCG
26920483 GTGATCTTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 24 0.53
40 21 0.47
ACGTcount: A:0.18, C:0.29, G:0.20, T:0.33
Consensus pattern (40 bp):
TGATTGCACATTCGTGCCCATGTTATGCACTACGATCCCC
Found at i:26920468 original size:21 final size:20
Alignment explanation
Indices: 26920411--26920479 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
26920401 TTCGTGCTCA
*
26920411 TGTTAGCACTACGAT-CCCC
1 TGTTTGCACTACGATGCCCC
* **
26920430 TGATTGCACATTTG-TGCCCC
1 TGTTTGCAC-TACGATGCCCC
26920450 TGTTATGCACTACGATG-CCC
1 TGTT-TGCACTACGATGCCCC
26920470 TGTTTGCACT
1 TGTTTGCACT
26920480 TCGGTGATCT
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
19 14 0.36
20 18 0.46
21 7 0.18
ACGTcount: A:0.17, C:0.30, G:0.19, T:0.33
Consensus pattern (20 bp):
TGTTTGCACTACGATGCCCC
Found at i:26920800 original size:29 final size:29
Alignment explanation
Indices: 26920758--26920815 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
26920748 TTAAGTTAAT
26920758 ATATATGTTTTTATATGAACTTACTAAGC
1 ATATATGTTTTTATATGAACTTACTAAGC
26920787 ATATATGTTTTTATATGAACTTACTAAGC
1 ATATATGTTTTTATATGAACTTACTAAGC
26920816 TTTTGTAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.45
Consensus pattern (29 bp):
ATATATGTTTTTATATGAACTTACTAAGC
Found at i:26923498 original size:99 final size:100
Alignment explanation
Indices: 26923386--26923572 Score: 279
Period size: 101 Copynumber: 1.9 Consensus size: 100
26923376 CTGGTACGCA
* *
26923386 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG-TTT-GGTACACGTAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-ACAGTTTTCGGTACACATAGTAGCCTGCACT
*
26923449 TAGTACTACACACGTGACCTCACCATCTAATACACG
65 TAGTACTACACACGCGACCTCACCATCTAATACACG
* * *
26923485 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCACAGTTTTC-GGTACACATAGTAGCCTGCACT
*
26923550 TAGTACTACACATGCGACCTCAC
65 TAGTACTACACACGCGACCTCAC
26923573 AATAGATCAT
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
98 4 0.05
99 33 0.42
101 41 0.53
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCACAGTTTTCGGTACACATAGTAGCCTGCACTT
AGTACTACACACGCGACCTCACCATCTAATACACG
Found at i:26923504 original size:50 final size:49
Alignment explanation
Indices: 26923386--26923561 Score: 185
Period size: 50 Copynumber: 3.5 Consensus size: 49
26923376 CTGGTACGCA
* * * **
26923386 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTTTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
*
26923435 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
* *** * *
26923485 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG---TCTAATACACG
26923536 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
26923562 TGCGACCTCA
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 29 0.27
50 40 0.37
51 36 0.33
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:26925451 original size:46 final size:46
Alignment explanation
Indices: 26925379--26925469 Score: 155
Period size: 46 Copynumber: 2.0 Consensus size: 46
26925369 AAAACATAGA
*
26925379 AAAATAACACGAAGTAAACTTTATAGCTTAGTAAGCTCGTATGTGG
1 AAAATAACACGAAGTAAACTTCATAGCTTAGTAAGCTCGTATGTGG
* *
26925425 AAAATAACAGGAAGTAAGCTTCATAGCTTAGTAAGCTCGTATGTG
1 AAAATAACACGAAGTAAACTTCATAGCTTAGTAAGCTCGTATGTG
26925470 AACAACTTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.27
Consensus pattern (46 bp):
AAAATAACACGAAGTAAACTTCATAGCTTAGTAAGCTCGTATGTGG
Found at i:26926547 original size:18 final size:18
Alignment explanation
Indices: 26926524--26926567 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
26926514 TGGCCCATTA
26926524 CAGTAACAATAAAT-AGTG
1 CAGTAACAAT-AATCAGTG
* *
26926542 CAGTAATAGTAATCAGTG
1 CAGTAACAATAATCAGTG
26926560 CAGTAACA
1 CAGTAACA
26926568 GTTTAAAGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 3 0.14
18 19 0.86
ACGTcount: A:0.45, C:0.14, G:0.18, T:0.23
Consensus pattern (18 bp):
CAGTAACAATAATCAGTG
Found at i:26930679 original size:46 final size:46
Alignment explanation
Indices: 26930629--26930850 Score: 275
Period size: 46 Copynumber: 4.8 Consensus size: 46
26930619 TGTTGGGGCA
* *
26930629 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *** * * * * *
26930675 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-ACG
* *
26930722 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
26930768 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
26930814 CCCGAGCTCGTTGAGTTGACTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26930851 GCGGGTTACA
Statistics
Matches: 151, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
46 116 0.77
47 35 0.23
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:26930784 original size:93 final size:93
Alignment explanation
Indices: 26930625--26930796 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
26930615 AGGATGTTGG
* * *
26930625 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
26930690 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
26930718 GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
26930783 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
26930797 ACTTATGGAT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:26938211 original size:22 final size:22
Alignment explanation
Indices: 26938166--26938211 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
26938156 ATAATTCATA
**
26938166 ATTATAATAAAGCATTTATCAC
1 ATTATAATAAAGCATTTAAAAC
*
26938188 ATTATATTAAAGCATTTAAAAC
1 ATTATAATAAAGCATTTAAAAC
26938210 AT
1 AT
26938212 ACTACCATAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.48, C:0.11, G:0.04, T:0.37
Consensus pattern (22 bp):
ATTATAATAAAGCATTTAAAAC
Found at i:26939421 original size:41 final size:43
Alignment explanation
Indices: 26939374--26939483 Score: 111
Period size: 43 Copynumber: 2.6 Consensus size: 43
26939364 TGATTACGTC
* *
26939374 TAAGACCATGTCTGGGACA-TCGGCATC-ATATTTGAT-TCATG
1 TAAGACCATGTCTGGGACAGT-GGCATCAATATATGATAGCATG
* * *
26939415 TAAGACCCTGTCTGGTACAGTGGCATCAATATATGGTAGCATG
1 TAAGACCATGTCTGGGACAGTGGCATCAATATATGATAGCATG
* *
26939458 TAATACCACGTCTGGGAC-GTTGGCAT
1 TAAGACCATGTCTGGGACAG-TGGCAT
26939484 TGTACGGTAT
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
41 23 0.41
42 9 0.16
43 24 0.43
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACAGTGGCATCAATATATGATAGCATG
Found at i:26940679 original size:2 final size:2
Alignment explanation
Indices: 26940672--26940699 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
26940662 TGATGGATAC
26940672 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26940700 TGGTTGTGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26941237 original size:29 final size:29
Alignment explanation
Indices: 26941205--26941263 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
26941195 TAATAAGGTA
26941205 TGCGCATGGAGTTTGTCATGTATTAAGCT
1 TGCGCATGGAGTTTGTCATGTATTAAGCT
26941234 TGCGCATGGAGTTTGTCATGTATTAAGCT
1 TGCGCATGGAGTTTGTCATGTATTAAGCT
26941263 T
1 T
26941264 TGTTATAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.20, C:0.14, G:0.27, T:0.39
Consensus pattern (29 bp):
TGCGCATGGAGTTTGTCATGTATTAAGCT
Found at i:26944207 original size:31 final size:31
Alignment explanation
Indices: 26944169--26944232 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
26944159 CCTTTTCATA
26944169 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
26944200 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
26944231 TT
1 TT
26944233 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:26944488 original size:24 final size:24
Alignment explanation
Indices: 26944424--26944588 Score: 248
Period size: 23 Copynumber: 7.0 Consensus size: 24
26944414 GCTTTATCAT
* *
26944424 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
**
26944449 ATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
26944472 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
26944495 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
26944519 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
26944542 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
26944566 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
26944589 TCACTTCCTC
Statistics
Matches: 133, Mismatches: 3, Indels: 9
0.92 0.02 0.06
Matches are distributed among these distances:
23 63 0.47
24 62 0.47
25 8 0.06
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:26944513 original size:47 final size:48
Alignment explanation
Indices: 26944424--26944588 Score: 248
Period size: 47 Copynumber: 3.5 Consensus size: 48
26944414 GCTTTATCAT
* **
26944424 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTG
26944472 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
*
26944519 ATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
26944566 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
26944589 TCACTTCCTC
Statistics
Matches: 110, Mismatches: 3, Indels: 8
0.91 0.02 0.07
Matches are distributed among these distances:
46 28 0.25
47 54 0.49
48 28 0.25
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
Found at i:26944664 original size:20 final size:20
Alignment explanation
Indices: 26944639--26944678 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
26944629 TATGATTACC
26944639 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
26944659 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
26944679 CCATATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:26944753 original size:25 final size:25
Alignment explanation
Indices: 26944721--26944768 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26944711 ATACATAAAC
* * *
26944721 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
26944746 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
26944769 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:26952334 original size:31 final size:31
Alignment explanation
Indices: 26952296--26952359 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
26952286 CCTTTTCATA
26952296 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
26952327 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
26952358 TT
1 TT
26952360 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:26952615 original size:24 final size:24
Alignment explanation
Indices: 26952551--26952668 Score: 170
Period size: 23 Copynumber: 5.0 Consensus size: 24
26952541 GCTTTATCAT
*
26952551 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
26952576 ATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
26952599 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
26952622 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
26952646 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
26952669 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
23 40 0.46
24 39 0.45
25 8 0.09
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:26952640 original size:47 final size:47
Alignment explanation
Indices: 26952551--26952668 Score: 168
Period size: 47 Copynumber: 2.5 Consensus size: 47
26952541 GCTTTATCAT
*
26952551 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAGCCCTTTCA
**
26952599 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCA-AAGCCCTTTCA
26952646 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
26952669 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
46 12 0.18
47 41 0.63
48 12 0.18
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAGCCCTTTCA
Found at i:26952744 original size:20 final size:20
Alignment explanation
Indices: 26952719--26952778 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
26952709 TATGATTACC
26952719 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
26952739 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
26952759 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
26952779 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:26952749 original size:11 final size:11
Alignment explanation
Indices: 26952719--26952773 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
26952709 TATGATTACC
26952719 TCATGTGCATA
1 TCATGTGCATA
*
26952730 TCA--TACATA
1 TCATGTGCATA
26952739 TCATGTGCATA
1 TCATGTGCATA
* *
26952750 TCA--TACATT
1 TCATGTGCATA
26952759 TCATGTGCATA
1 TCATGTGCATA
26952770 TCAT
1 TCAT
26952774 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:26952853 original size:25 final size:25
Alignment explanation
Indices: 26952821--26952868 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26952811 ATACATAAAC
* * *
26952821 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
26952846 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
26952869 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:26958620 original size:43 final size:41
Alignment explanation
Indices: 26958572--26958664 Score: 123
Period size: 43 Copynumber: 2.2 Consensus size: 41
26958562 TGTGTTCTCG
*
26958572 TGTAAGACCACGTCTAGGACATTGGCATCGATATGTGATTACA
1 TGTAAGACCACGTCGAGGACATTGGCATC-ATATGTGATT-CA
* * * *
26958615 TGTAAGACCATGTCGGGGACATTGGCATCATATTTGATTCG
1 TGTAAGACCACGTCGAGGACATTGGCATCATATGTGATTCA
26958656 TGTAAGACC
1 TGTAAGACC
26958665 CTATTTGAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
41 10 0.22
42 9 0.20
43 26 0.58
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (41 bp):
TGTAAGACCACGTCGAGGACATTGGCATCATATGTGATTCA
Found at i:26965225 original size:29 final size:29
Alignment explanation
Indices: 26965183--26965265 Score: 96
Period size: 29 Copynumber: 2.9 Consensus size: 29
26965173 ATGACTATTT
26965183 ATGTGATTTGGGCCTAATGGGCCATACGA
1 ATGTGATTTGGGCCTAATGGGCCATACGA
* * * *
26965212 ATGTGATTTGGGCCCAATGGTCCGTATGA
1 ATGTGATTTGGGCCTAATGGGCCATACGA
* * *
26965241 ATGAGA-TTGGGCCTAGTGGGTCATA
1 ATGTGATTTGGGCCTAATGGGCCATA
26965266 TACGTGTATG
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 14 0.32
29 30 0.68
ACGTcount: A:0.23, C:0.16, G:0.33, T:0.29
Consensus pattern (29 bp):
ATGTGATTTGGGCCTAATGGGCCATACGA
Found at i:26965594 original size:27 final size:27
Alignment explanation
Indices: 26965564--26965619 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
26965554 ATAACAAGAG
* *
26965564 AAATTACCAAAATGCCCCTAAGGGCGA
1 AAATGACCAAAATACCCCTAAGGGCGA
* * *
26965591 AAATGACTAAAATACCCCTATGTGCGA
1 AAATGACCAAAATACCCCTAAGGGCGA
26965618 AA
1 AA
26965620 TGTATGACTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.43, C:0.23, G:0.16, T:0.18
Consensus pattern (27 bp):
AAATGACCAAAATACCCCTAAGGGCGA
Found at i:26967368 original size:14 final size:15
Alignment explanation
Indices: 26967335--26967366 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
26967325 TCAAAAAATA
26967335 TTTTA-ATATTATTT
1 TTTTATATATTATTT
26967349 TTTTATATATTATTT
1 TTTTATATATTATTT
26967364 TTT
1 TTT
26967367 ATTTTCCTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTATATATTATTT
Found at i:26968444 original size:30 final size:30
Alignment explanation
Indices: 26968408--26968469 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
26968398 AATCAGAAGT
*
26968408 TTTGGCACTAAGTTTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
26968438 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
26968468 TT
1 TT
26968470 CAGCTACTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (30 bp):
TTTGGCACTAAGTGTGCGATTTAAACTAGC
Found at i:26971884 original size:27 final size:28
Alignment explanation
Indices: 26971851--26971920 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
26971841 ATAGTGATTC
26971851 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
26971878 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
26971906 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26971921 GTACCAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26972414 original size:14 final size:14
Alignment explanation
Indices: 26972395--26972422 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26972385 CGGGCATACT
26972395 TATGTATATATATA
1 TATGTATATATATA
26972409 TATGTATATATATA
1 TATGTATATATATA
26972423 CACTTCCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
TATGTATATATATA
Found at i:26977037 original size:11 final size:11
Alignment explanation
Indices: 26977021--26977048 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
26977011 CGAAGTCCAC
26977021 ATCATAATAAT
1 ATCATAATAAT
26977032 ATCATAATAAT
1 ATCATAATAAT
26977043 ATCATA
1 ATCATA
26977049 TGTGCAATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.36
Consensus pattern (11 bp):
ATCATAATAAT
Found at i:26977789 original size:28 final size:28
Alignment explanation
Indices: 26977758--26977812 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
26977748 CCAATCTCTT
*
26977758 TTATATGGCCCATGAGGCTCAAATCACA
1 TTATATGGCCCATGAGGCCCAAATCACA
*
26977786 TTATATGGCCCATTAGGCCCAAATCAC
1 TTATATGGCCCATGAGGCCCAAATCAC
26977813 GTTTACAGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (28 bp):
TTATATGGCCCATGAGGCCCAAATCACA
Found at i:26982832 original size:31 final size:31
Alignment explanation
Indices: 26982797--26982860 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
26982787 CCTTTTCATA
26982797 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
**
26982828 TTTCATATTTCATGTTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
26982859 TT
1 TT
26982861 ACTATAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:26983103 original size:24 final size:24
Alignment explanation
Indices: 26983051--26983170 Score: 188
Period size: 24 Copynumber: 5.0 Consensus size: 24
26983041 TGTTTATCAT
* *
26983051 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
26983076 ATAACTGGGGCAAAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
26983100 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
26983124 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
26983148 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
26983171 TCACTTCCTC
Statistics
Matches: 90, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
24 78 0.87
25 12 0.13
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:26983246 original size:20 final size:20
Alignment explanation
Indices: 26983221--26983280 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
26983211 TATGATTACC
26983221 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
26983241 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
26983261 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
26983281 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:26983355 original size:25 final size:25
Alignment explanation
Indices: 26983323--26983370 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26983313 ATACATAAAC
* * *
26983323 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
26983348 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
26983371 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:26990076 original size:29 final size:29
Alignment explanation
Indices: 26990043--26990174 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
26990033 GTGACGAGAT
26990043 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
26990072 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
26990101 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
26990130 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
26990159 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26990175 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:27002019 original size:15 final size:15
Alignment explanation
Indices: 27001999--27002048 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
27001989 CGAGAAGGCC
*
27001999 GAGAAAGAAAATACT
1 GAGAAAGAAACTACT
*
27002014 GAGAAAGAAGCTACT
1 GAGAAAGAAACTACT
* *
27002029 AAGAAAGAATCTACT
1 GAGAAAGAAACTACT
27002044 GAGAA
1 GAGAA
27002049 CATTGTTAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.54, C:0.10, G:0.22, T:0.14
Consensus pattern (15 bp):
GAGAAAGAAACTACT
Done.