Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 96 of 438
Found at i:27007238 original size:21 final size:21
Alignment explanation
Indices: 27007212--27007256 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
27007202 ATGAAACGAT
27007212 GAAAATACAAATGAAATGT-CC
1 GAAAATACAAAT-AAATGTACC
* *
27007233 GAAAATGCAACTAAATGTACC
1 GAAAATACAAATAAATGTACC
27007254 GAA
1 GAA
27007257 GTACAAGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.18
Consensus pattern (21 bp):
GAAAATACAAATAAATGTACC
Found at i:27010493 original size:27 final size:27
Alignment explanation
Indices: 27010463--27010532 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
27010453 AATCTCATAT
* *
27010463 TTGTAGGCTAGCATTACTGAAATACCC
1 TTGTAGGGTAGAATTACTGAAATACCC
* *
27010490 TTGTAGGGTAGAAGTACTGAAATGCCC
1 TTGTAGGGTAGAATTACTGAAATACCC
*
27010517 CTGTAGGGTAGAATTA
1 TTGTAGGGTAGAATTA
27010533 TCAAAATACC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
TTGTAGGGTAGAATTACTGAAATACCC
Found at i:27010539 original size:27 final size:27
Alignment explanation
Indices: 27010477--27010543 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
27010467 AGGCTAGCAT
* *
27010477 TACTGAAATACCCTTGTAGGGTAGAAG
1 TACTAAAATACCCCTGTAGGGTAGAAG
* * *
27010504 TACTGAAATGCCCCTGTAGGGTAGAAT
1 TACTAAAATACCCCTGTAGGGTAGAAG
27010531 TA-TCAAAATACCC
1 TACT-AAAATACCC
27010544 TCGACCTGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.03
27 33 0.97
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
TACTAAAATACCCCTGTAGGGTAGAAG
Found at i:27010558 original size:27 final size:27
Alignment explanation
Indices: 27010528--27010624 Score: 106
Period size: 27 Copynumber: 3.6 Consensus size: 27
27010518 TGTAGGGTAG
* *
27010528 AATTATCAAAATACCCTCGACCTGTAA
1 AATTACCAAAATACCCTCGACTTGTAA
* *
27010555 AATTACCAAAATA-CCTCTGATTTGTGA
1 AATTACCAAAATACCCTC-GACTTGTAA
* * *
27010582 AATTGCTAAAATACCCTCAACTTGTAA
1 AATTACCAAAATACCCTCGACTTGTAA
*
27010609 AATTACCAAAGTACCC
1 AATTACCAAAATACCC
27010625 CAGATTTACA
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
26 4 0.07
27 48 0.86
28 4 0.07
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCTCGACTTGTAA
Found at i:27010639 original size:54 final size:54
Alignment explanation
Indices: 27010535--27010639 Score: 138
Period size: 54 Copynumber: 1.9 Consensus size: 54
27010525 TAGAATTATC
* * * ***
27010535 AAAATACCCTCGACCTGTAAAATTACCAAAATACCTCTGATTTGTGAAATTGCT
1 AAAATACCCTCAACCTGTAAAATTACCAAAATACCCCAGATTTACAAAATTGCT
* *
27010589 AAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCAGATTTACAAAATT
1 AAAATACCCTCAACCTGTAAAATTACCAAAATACCCCAGATTTACAAAATT
27010640 ACCATTTTAC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.28
Consensus pattern (54 bp):
AAAATACCCTCAACCTGTAAAATTACCAAAATACCCCAGATTTACAAAATTGCT
Found at i:27010650 original size:27 final size:27
Alignment explanation
Indices: 27010627--27011461 Score: 1026
Period size: 27 Copynumber: 30.9 Consensus size: 27
27010617 AAGTACCCCA
* * *
27010627 GATTTACAAAATTACCATTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
* **
27010654 GATATACAGAATTACTATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
27010681 GATTTACAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* **
27010708 GATTTATAGAATTATTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
27010735 GATTTACAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* * *
27010762 GATTTACAAAATTATCATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
27010789 GATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
27010816 GATTTACAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
27010843 GATTTACAAAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* * *
27010870 GATTTATAGAATTACCATTTTACCTTC
1 GATTTACAGAATTACCGTTTTACCCTC
** *
27010897 GATTTACAGAATTACTATTTTACCTTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
27010924 GATTTACAAAATTACCGTTTTACCTTC
1 GATTTACAGAATTACCGTTTTACCCTC
27010951 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
27010978 GATTTACAGAATTACCATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* **
27011005 GTTTTACAGAATTACTATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
27011032 GTTTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* **
27011059 GATTTACAAAATTACTATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
27011086 AATTTACAGAATTACCGTTTTACCTTC
1 GATTTACAGAATTACCGTTTTACCCTC
* * ** * *
27011113 GATTTACAAAATCACTATTCTATCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
27011140 GATTTACAGAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *** *
27011167 GATTTATAGAATTACTACTTTACCCCC
1 GATTTACAGAATTACCGTTTTACCCTC
27011194 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
27011221 GATTTATAGAATTACTC-TTTTACCCTC
1 GATTTACAGAATTAC-CGTTTTACCCTC
*
27011248 GATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* ***
27011275 GATTTACAAAATTATTATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
27011302 GATTTACAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* * ** *
27011329 GATTTACAAAATCACTATTTTAGCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
27011356 GATTTACAGAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* * *
27011383 GATTTATAGAATTACTGCTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
27011410 GATTTACAGAATTA-CGATTTTACCCTT
1 GATTTACAGAATTACCG-TTTTACCCTC
* * *
27011437 GATTTATAAAATTACCATTTTACCC
1 GATTTACAGAATTACCGTTTTACCC
27011462 CTAGGATGTT
Statistics
Matches: 697, Mismatches: 107, Indels: 8
0.86 0.13 0.01
Matches are distributed among these distances:
26 2 0.00
27 693 0.99
28 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTC
Found at i:27012003 original size:6 final size:6
Alignment explanation
Indices: 27011965--27012058 Score: 59
Period size: 6 Copynumber: 15.3 Consensus size: 6
27011955 TTCCATTCAC
* * *
27011965 ATTCTG ATTTTG ATTCT- ATTACCTG ATACTG ATTTTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
27012014 -TCACCTA ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
27012059 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 14, Indels: 16
0.69 0.15 0.17
Matches are distributed among these distances:
5 5 0.08
6 53 0.80
7 5 0.08
8 3 0.05
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:27012010 original size:31 final size:31
Alignment explanation
Indices: 27011965--27012037 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
27011955 TTCCATTCAC
* * *
27011965 ATTCTGATTTTGATTCTATTACCTGATACTG
1 ATTCTGATTCTGATTCTATCACCTAATACTG
* * *
27011996 ATTTTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTATCACCTAATACTG
27012027 ATTCTGATTCT
1 ATTCTGATTCT
27012038 CATTTTGATT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATCACCTAATACTG
Found at i:27013348 original size:18 final size:18
Alignment explanation
Indices: 27013321--27013357 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
27013311 TTATACGTCT
*
27013321 TAATTGTAACATAAATCC
1 TAATTATAACATAAATCC
27013339 TAATTATAACATAAATCC
1 TAATTATAACATAAATCC
27013357 T
1 T
27013358 TACACATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.35
Consensus pattern (18 bp):
TAATTATAACATAAATCC
Found at i:27015105 original size:13 final size:14
Alignment explanation
Indices: 27015084--27015117 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
27015074 AATCTTAAAT
27015084 CCCAAACT-CAAAC
1 CCCAAACTCCAAAC
*
27015097 CCTAAACTCCAAAC
1 CCCAAACTCCAAAC
27015111 CCCAAAC
1 CCCAAAC
27015118 CATAAACTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.44, C:0.47, G:0.00, T:0.09
Consensus pattern (14 bp):
CCCAAACTCCAAAC
Found at i:27015471 original size:32 final size:32
Alignment explanation
Indices: 27015435--27015501 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
27015425 AATAAGAGAT
* *
27015435 GAATAAT-AAATAAAGTAGTTCAAATTCTAGTA
1 GAATAATAAAATAAAGTAATT-AAATTCTACTA
*
27015467 GAATAATAAAATGAAGTAATTAAATTCTACTA
1 GAATAATAAAATAAAGTAATTAAATTCTACTA
27015499 GAA
1 GAA
27015502 ATCCTTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 20 0.65
33 11 0.35
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.30
Consensus pattern (32 bp):
GAATAATAAAATAAAGTAATTAAATTCTACTA
Found at i:27016952 original size:25 final size:25
Alignment explanation
Indices: 27016907--27016958 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
27016897 TCACTTTGAG
27016907 TTAATAAAATTCTTTTAAGTGTTTCT
1 TTAATAAAATTCTTTTAAGTG-TTCT
*
27016933 TTAAT-AATTTCTCTTT-AGTGTTCT
1 TTAATAAAATTCT-TTTAAGTGTTCT
27016957 TT
1 TT
27016959 TAGAAGAGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 6 0.25
25 10 0.42
26 8 0.33
ACGTcount: A:0.25, C:0.10, G:0.08, T:0.58
Consensus pattern (25 bp):
TTAATAAAATTCTTTTAAGTGTTCT
Found at i:27017924 original size:25 final size:25
Alignment explanation
Indices: 27017879--27017930 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
27017869 TCACTTTGAG
27017879 TTAATAAAATTCTTTTAAGTGTTTCT
1 TTAATAAAATTCTTTTAAGTG-TTCT
*
27017905 TTAAT-AATTTCTCTTT-AGTGTTCT
1 TTAATAAAATTCT-TTTAAGTGTTCT
27017929 TT
1 TT
27017931 TAGAAGAGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 6 0.25
25 10 0.42
26 8 0.33
ACGTcount: A:0.25, C:0.10, G:0.08, T:0.58
Consensus pattern (25 bp):
TTAATAAAATTCTTTTAAGTGTTCT
Found at i:27018138 original size:972 final size:972
Alignment explanation
Indices: 27016255--27018202 Score: 3860
Period size: 972 Copynumber: 2.0 Consensus size: 972
27016245 GCATCCCATC
27016255 AATTCATTTCATATTTATATATCTTAAATGAGTTGTTGAGTCATTTAATGACTATTAAATGTAGA
1 AATTCATTTCATATTTATATATCTTAAATGAGTTGTTGAGTCATTTAATGACTATTAAATGTAGA
27016320 TGTTATGATTATTTAATTGTGTATTTATGTTGTATAGATTTTAAAGACAAAGAGATTGCTAAAGG
66 TGTTATGATTATTTAATTGTGTATTTATGTTGTATAGATTTTAAAGACAAAGAGATTGCTAAAGG
27016385 CTTTTGTAAATAAAAAGAGAGCCAACGAAAACCTTTAGAAGAGTCACTCCAAGTTTCATCATATC
131 CTTTTGTAAATAAAAAGAGAGCCAACGAAAACCTTTAGAAGAGTCACTCCAAGTTTCATCATATC
27016450 TATCGAATATCTATTTTTTAGCTTCGTATTGCATTTTTAATTACTCAATTTCGATCTCGAGAACT
196 TATCGAATATCTATTTTTTAGCTTCGTATTGCATTTTTAATTACTCAATTTCGATCTCGAGAACT
27016515 CAAGTTATGACTGTTTTCGTGAAGATTGCGCAAGTAGAATTTCTAAATGTGACTATTACAAAAAT
261 CAAGTTATGACTGTTTTCGTGAAGATTGCGCAAGTAGAATTTCTAAATGTGACTATTACAAAAAT
27016580 TATGAGTTTTAAGCTTTTAATTTGAGTTTAAATCATAATGAGTTTGATTTTTAGGCTAAATTTTT
326 TATGAGTTTTAAGCTTTTAATTTGAGTTTAAATCATAATGAGTTTGATTTTTAGGCTAAATTTTT
27016645 ATCATATATGAGCCTAATGTTTTATTTATTAAGTTTTATTATTTTATTATTTATTTATTCCAAAT
391 ATCATATATGAGCCTAATGTTTTATTTATTAAGTTTTATTATTTTATTATTTATTTATTCCAAAT
27016710 TTTGGATATTTTTTAAGTATTCTAAAATTATTTGAGAGTTTTATGTCAACAAGAATGTTTAATTT
456 TTTGGATATTTTTTAAGTATTCTAAAATTATTTGAGAGTTTTATGTCAACAAGAATGTTTAATTT
27016775 AAAACTACTTGTTGTTTAGATTAACTAGAACTTCAGTATACTTGAGTGTTTTGTTTATATGTAAT
521 AAAACTACTTGTTGTTTAGATTAACTAGAACTTCAGTATACTTGAGTGTTTTGTTTATATGTAAT
27016840 TAACTAGCCTATATAAAGGCCTCTTCATTGTACACAATTCATGAATTCGTTCATTATTCACTTTG
586 TAACTAGCCTATATAAAGGCCTCTTCATTGTACACAATTCATGAATTCGTTCATTATTCACTTTG
27016905 AGTTAATAAAATTCTTTTAAGTGTTTCTTTAATAATTTCTCTTTAGTGTTCTTTTAGAAGAGTGG
651 AGTTAATAAAATTCTTTTAAGTGTTTCTTTAATAATTTCTCTTTAGTGTTCTTTTAGAAGAGTGG
27016970 ATCATCTTCAAGCTTTTTCTTGCCAAGTTTTCTTTATTGGAGGGAAAATAGAACACCCTCGCTCG
716 ATCATCTTCAAGCTTTTTCTTGCCAAGTTTTCTTTATTGGAGGGAAAATAGAACACCCTCGCTCG
*
27017035 ACTCATTCATCGGGTCAGAGTTACTGTTTGCTACAATCATTGTCGGAGTAACTAATGACGAAAAC
781 ACTCATTCATCGGGTCAGAGTTACTGTTTGCTACAATCATTGTCGGAGCAACTAATGACGAAAAC
27017100 ATCGAAATAAATCAATTAATCATACAAAAAATTTAAATTTTGAATCATTGTATGATAAATAAAAT
846 ATCGAAATAAATCAATTAATCATACAAAAAATTTAAATTTTGAATCATTGTATGATAAATAAAAT
27017165 TTCCTAAAAATTCAATTGAGTTTACGAGAACTCAATTGATAAGTTAGACATGAAATAGGGCT
911 TTCCTAAAAATTCAATTGAGTTTACGAGAACTCAATTGATAAGTTAGACATGAAATAGGGCT
27017227 AATTCATTTCATATTTATATATCTTAAATGAGTTGTTGAGTCATTTAATGACTATTAAATGTAGA
1 AATTCATTTCATATTTATATATCTTAAATGAGTTGTTGAGTCATTTAATGACTATTAAATGTAGA
27017292 TGTTATGATTATTTAATTGTGTATTTATGTTGTATAGATTTTAAAGACAAAGAGATTGCTAAAGG
66 TGTTATGATTATTTAATTGTGTATTTATGTTGTATAGATTTTAAAGACAAAGAGATTGCTAAAGG
27017357 CTTTTGTAAATAAAAAGAGAGCCAACGAAAACCTTTAGAAGAGTCACTCCAAGTTTCATCATATC
131 CTTTTGTAAATAAAAAGAGAGCCAACGAAAACCTTTAGAAGAGTCACTCCAAGTTTCATCATATC
*
27017422 TATCGAATATCTATTTTTTAGCTTCGTATTGCATTTTTAATTACTCAATTTCGATCTTGAGAACT
196 TATCGAATATCTATTTTTTAGCTTCGTATTGCATTTTTAATTACTCAATTTCGATCTCGAGAACT
27017487 CAAGTTATGACTGTTTTCGTGAAGATTGCGCAAGTAGAATTTCTAAATGTGACTATTACAAAAAT
261 CAAGTTATGACTGTTTTCGTGAAGATTGCGCAAGTAGAATTTCTAAATGTGACTATTACAAAAAT
27017552 TATGAGTTTTAAGCTTTTAATTTGAGTTTAAATCATAATGAGTTTGATTTTTAGGCTAAATTTTT
326 TATGAGTTTTAAGCTTTTAATTTGAGTTTAAATCATAATGAGTTTGATTTTTAGGCTAAATTTTT
27017617 ATCATATATGAGCCTAATGTTTTATTTATTAAGTTTTATTATTTTATTATTTATTTATTCCAAAT
391 ATCATATATGAGCCTAATGTTTTATTTATTAAGTTTTATTATTTTATTATTTATTTATTCCAAAT
27017682 TTTGGATATTTTTTAAGTATTCTAAAATTATTTGAGAGTTTTATGTCAACAAGAATGTTTAATTT
456 TTTGGATATTTTTTAAGTATTCTAAAATTATTTGAGAGTTTTATGTCAACAAGAATGTTTAATTT
27017747 AAAACTACTTGTTGTTTAGATTAACTAGAACTTCAGTATACTTGAGTGTTTTGTTTATATGTAAT
521 AAAACTACTTGTTGTTTAGATTAACTAGAACTTCAGTATACTTGAGTGTTTTGTTTATATGTAAT
27017812 TAACTAGCCTATATAAAGGCCTCTTCATTGTACACAATTCATGAATTCGTTCATTATTCACTTTG
586 TAACTAGCCTATATAAAGGCCTCTTCATTGTACACAATTCATGAATTCGTTCATTATTCACTTTG
27017877 AGTTAATAAAATTCTTTTAAGTGTTTCTTTAATAATTTCTCTTTAGTGTTCTTTTAGAAGAGTGG
651 AGTTAATAAAATTCTTTTAAGTGTTTCTTTAATAATTTCTCTTTAGTGTTCTTTTAGAAGAGTGG
27017942 ATCATCTTCAAGCTTTTTCTTGCCAAGTTTTCTTTATTGGAGGGAAAATAGAACACCCTCGCTCG
716 ATCATCTTCAAGCTTTTTCTTGCCAAGTTTTCTTTATTGGAGGGAAAATAGAACACCCTCGCTCG
**
27018007 ACTCATTCATCGGGTCAGAGTTACTGTTTGCTACAATCATTGTCGGAGCAACTAATGGTGAAAAC
781 ACTCATTCATCGGGTCAGAGTTACTGTTTGCTACAATCATTGTCGGAGCAACTAATGACGAAAAC
27018072 ATCGAAATAAATCAATTAATCATACAAAAAATTTAAATTTTGAATCATTGTATGATAAATAAAAT
846 ATCGAAATAAATCAATTAATCATACAAAAAATTTAAATTTTGAATCATTGTATGATAAATAAAAT
27018137 TTCCTAAAAATTCAATTGAGTTTACGAGAACTCAATTGATAAGTTAGACATGAAATAGGGCT
911 TTCCTAAAAATTCAATTGAGTTTACGAGAACTCAATTGATAAGTTAGACATGAAATAGGGCT
27018199 AATT
1 AATT
27018203 TATAAACTTT
Statistics
Matches: 972, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
972 972 1.00
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (972 bp):
AATTCATTTCATATTTATATATCTTAAATGAGTTGTTGAGTCATTTAATGACTATTAAATGTAGA
TGTTATGATTATTTAATTGTGTATTTATGTTGTATAGATTTTAAAGACAAAGAGATTGCTAAAGG
CTTTTGTAAATAAAAAGAGAGCCAACGAAAACCTTTAGAAGAGTCACTCCAAGTTTCATCATATC
TATCGAATATCTATTTTTTAGCTTCGTATTGCATTTTTAATTACTCAATTTCGATCTCGAGAACT
CAAGTTATGACTGTTTTCGTGAAGATTGCGCAAGTAGAATTTCTAAATGTGACTATTACAAAAAT
TATGAGTTTTAAGCTTTTAATTTGAGTTTAAATCATAATGAGTTTGATTTTTAGGCTAAATTTTT
ATCATATATGAGCCTAATGTTTTATTTATTAAGTTTTATTATTTTATTATTTATTTATTCCAAAT
TTTGGATATTTTTTAAGTATTCTAAAATTATTTGAGAGTTTTATGTCAACAAGAATGTTTAATTT
AAAACTACTTGTTGTTTAGATTAACTAGAACTTCAGTATACTTGAGTGTTTTGTTTATATGTAAT
TAACTAGCCTATATAAAGGCCTCTTCATTGTACACAATTCATGAATTCGTTCATTATTCACTTTG
AGTTAATAAAATTCTTTTAAGTGTTTCTTTAATAATTTCTCTTTAGTGTTCTTTTAGAAGAGTGG
ATCATCTTCAAGCTTTTTCTTGCCAAGTTTTCTTTATTGGAGGGAAAATAGAACACCCTCGCTCG
ACTCATTCATCGGGTCAGAGTTACTGTTTGCTACAATCATTGTCGGAGCAACTAATGACGAAAAC
ATCGAAATAAATCAATTAATCATACAAAAAATTTAAATTTTGAATCATTGTATGATAAATAAAAT
TTCCTAAAAATTCAATTGAGTTTACGAGAACTCAATTGATAAGTTAGACATGAAATAGGGCT
Found at i:27034379 original size:49 final size:49
Alignment explanation
Indices: 27034322--27034782 Score: 219
Period size: 49 Copynumber: 9.6 Consensus size: 49
27034312 ACATCTAAAT
*
27034322 CGATGCCATGTCCCAAACAGGTCTTACACTGACTTCCATACATCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACATCGAGGC
* * * * * * *
27034371 CAATGCCATGTCCTAGACAGGTTTTACACTGGC-TCTCACT-TATCTG-TGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTC-CA-TACATC-GAGGC
* * * *
27034420 CGATGCCATGTCCCAGACAGGTCTTACACT-A---ACACACCTC-AAGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACATCGAGGC
* * * * * *
27034464 TGATGTCATGTCCTAGACAGGTCTTACACT-AGCTTGCATATC-TTGAGGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTCCATA-CATCGAGGC
* * * * *
27034513 TGATGCCGTGTACCAGATAGGTCTTACACTGACTTCCATACATTGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACATCGAGGC
* * * * * *
27034562 CAATGCCATGTCCTAGACAGGTCTTACACTGGCTCTCACTTATC-TC--TGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACT-TC-CATA-CATCGAGGC
* * * * *
27034611 CGATGCCATGTCCCAGATAGGTCTTACACTGA----CACACCTC-AAGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACATCGAGGC
* * * * * *
27034655 TGATGTCATGTCCTAGACAGGTCTTACACT-AGCTTGCATATCCT-GAGGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTCCATA-CATCGAGGC
* * * * * * *
27034704 TGATGCCGTGTACCAGATAGGTCTTACACTGTC-TCTCAT-CTATCGATGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTC-CATAC-ATCGAGGC
* *
27034753 GGATGCCATGTCCTAGACAGGTCTTACACT
1 CGATGCCATGTCCCAGACAGGTCTTACACT
27034783 AGCACACACA
Statistics
Matches: 312, Mismatches: 71, Indels: 58
0.71 0.16 0.13
Matches are distributed among these distances:
42 1 0.00
43 5 0.02
44 57 0.18
45 4 0.01
47 1 0.00
48 12 0.04
49 222 0.71
50 5 0.02
51 4 0.01
52 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACATCGAGGC
Found at i:27034431 original size:98 final size:98
Alignment explanation
Indices: 27034294--27034782 Score: 406
Period size: 98 Copynumber: 5.1 Consensus size: 98
27034284 CTCCAAACAT
* *** *
27034294 GGTCTTTCACTGGCTCTCAC--ATCTAAATCGATGCCATGTCCCAAACAGGTCTTACACTGACTT
1 GGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAGGTCTTACACTGACTT
27034357 CCATACATCGAGGCCAATGCCATGTCCTAGACA
66 CCATACATCGAGGCCAATGCCATGTCCTAGACA
*
27034390 GGTTTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAGGTCTTACACT-A---
1 GGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAGGTCTTACACTGACTT
* * * * ** *
27034451 ACACACCTC-AAGCTGATGTCATGTCCTAGACA
66 CCATACATCGAGGCCAATGCCATGTCCTAGACA
* * * * * *
27034483 GGTCTTACACTAGCT-TGCA--TATCTTGAGGTTGATGCCGTGTACCAGATAGGTCTTACACTGA
1 GGTCTTACACTGGCTCT-CACTTATC-TG-TGTCGATGCCATGTCCCAGACAGGTCTTACACTGA
*
27034545 CTTCCATACATTGAGGCCAATGCCATGTCCTAGACA
63 CTTCCATACATCGAGGCCAATGCCATGTCCTAGACA
* *
27034581 GGTCTTACACTGGCTCTCACTTATCTCTGTCGATGCCATGTCCCAGATAGGTCTTACACTGA---
1 GGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAGGTCTTACACTGACTT
* * * *** *
27034643 -CACACCTC-AAGTTGATGTCATGTCCTAGACA
66 CCATACATCGAGGCCAATGCCATGTCCTAGACA
* * * * * * *
27034674 GGTCTTACACTAGCT-TGCA--TATCCTGAGGTTGATGCCGTGTACCAGATAGGTCTTACACTGT
1 GGTCTTACACTGGCTCT-CACTTAT-CTG-TGTCGATGCCATGTCCCAGACAGGTCTTACACTGA
* ***
27034736 C-TCTCAT-CTATCGATGTGGATGCCATGTCCTAGACA
63 CTTC-CATAC-ATCGAGGCCAATGCCATGTCCTAGACA
27034772 GGTCTTACACT
1 GGTCTTACACT
27034783 AGCACACACA
Statistics
Matches: 317, Mismatches: 54, Indels: 42
0.77 0.13 0.10
Matches are distributed among these distances:
91 7 0.02
92 6 0.02
93 126 0.40
94 12 0.04
96 19 0.06
97 10 0.03
98 131 0.41
99 2 0.01
100 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (98 bp):
GGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAGGTCTTACACTGACTT
CCATACATCGAGGCCAATGCCATGTCCTAGACA
Found at i:27034529 original size:93 final size:93
Alignment explanation
Indices: 27034377--27034734 Score: 372
Period size: 93 Copynumber: 3.8 Consensus size: 93
27034367 AGGCCAATGC
* * * * *
27034377 CATGTCCTAGACAGGTTTTACACTGGCTCTCACTTATC-TGTGTCGATGCCATGTCCCAGACAGG
1 CATGTCCTAGACAGGTCTTACACTAGCTCTCAC-TATCTTGGGTCGATGCCATGTACCAGATAGG
*
27034441 TCTTACACTAACACACCTCAAGCTGATGT
65 TCTTACACTGACACACCTCAAGCTGATGT
* *
27034470 CATGTCCTAGACAGGTCTTACACTAGCT-TGCA-TATCTTGAGGTTGATGCCGTGTACCAGATAG
1 CATGTCCTAGACAGGTCTTACACTAGCTCT-CACTATCTTG-GGTCGATGCCATGTACCAGATAG
* * ** *
27034533 GTCTTACACTGACTTC-CATACATTGAGGCCAATGC
64 GTCTTACACTGAC-ACACCT-CA---A-GCTGATGT
* *
27034568 CATGTCCTAGACAGGTCTTACACTGGCTCTCACTTATCTCT--GTCGATGCCATGTCCCAGATAG
1 CATGTCCTAGACAGGTCTTACACTAGCTCTCAC-TATCT-TGGGTCGATGCCATGTACCAGATAG
*
27034631 GTCTTACACTGACACACCTCAAGTTGATGT
64 GTCTTACACTGACACACCTCAAGCTGATGT
* * *
27034661 CATGTCCTAGACAGGTCTTACACTAGCT-TGCA-TATCCTGAGGTTGATGCCGTGTACCAGATAG
1 CATGTCCTAGACAGGTCTTACACTAGCTCT-CACTATCTTG-GGTCGATGCCATGTACCAGATAG
27034724 GTCTTACACTG
64 GTCTTACACTG
27034735 TCTCTCATCT
Statistics
Matches: 219, Mismatches: 28, Indels: 36
0.77 0.10 0.13
Matches are distributed among these distances:
90 1 0.00
91 8 0.04
92 4 0.02
93 123 0.56
94 4 0.02
97 4 0.02
98 68 0.31
99 1 0.00
100 5 0.02
101 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (93 bp):
CATGTCCTAGACAGGTCTTACACTAGCTCTCACTATCTTGGGTCGATGCCATGTACCAGATAGGT
CTTACACTGACACACCTCAAGCTGATGT
Found at i:27034657 original size:142 final size:144
Alignment explanation
Indices: 27034465--27034791 Score: 326
Period size: 142 Copynumber: 2.3 Consensus size: 144
27034455 ACCTCAAGCT
* * * * * * * *
27034465 GATGTCATGTCCTAGACAGGTCTTACACTAGCTTGCATATCTTGAGGTTGATGCCGTGTACC-AG
1 GATGCCATGTCCCAGACAGGTCTTACACTAGC--ACACA-CCTCAAGTTGATGCCATGT-CCTAG
* *
27034529 ATAGGTCTTACACT-GACTTCCATA-CATTGAGGCCAATGCCATGT-CCTAGACAGGTCTTACAC
62 ACAGGTCTTACACTAG-CTTCCATATC-CTGAGGCCAATGCCATGTACC-AGACAGGTCTTACAC
**
27034591 TGGCTCTCA-CTTATCTCTGTC
124 TGGCTCTCATC-TATCGATGTC
* *
27034612 GATGCCATGTCCCAGATAGGTCTTACACT-G-ACACACCTCAAGTTGATGTCATGTCCTAGACAG
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCACACACCTCAAGTTGATGCCATGTCCTAGACAG
* *** * * *
27034675 GTCTTACACTAGCTTGCATATCCTGAGGTTGATGCCGTGTACCAGATAGGTCTTACACTGTCTCT
66 GTCTTACACTAGCTTCCATATCCTGAGGCCAATGCCATGTACCAGACAGGTCTTACACTGGCTCT
*
27034740 CATCTATCGATGTG
131 CATCTATCGATGTC
*
27034754 GATGCCATGTCCTAGACAGGTCTTACACTAGCACACAC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCACACAC
27034792 ATCACCCAAA
Statistics
Matches: 149, Mismatches: 24, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
141 2 0.01
142 105 0.70
143 9 0.06
144 6 0.04
146 1 0.01
147 26 0.17
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (144 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCACACACCTCAAGTTGATGCCATGTCCTAGACAG
GTCTTACACTAGCTTCCATATCCTGAGGCCAATGCCATGTACCAGACAGGTCTTACACTGGCTCT
CATCTATCGATGTC
Found at i:27034664 original size:191 final size:191
Alignment explanation
Indices: 27034340--27034782 Score: 746
Period size: 191 Copynumber: 2.3 Consensus size: 191
27034330 TGTCCCAAAC
*
27034340 AGGTCTTACACTGACTTCCATACATCGAGGCCAATGCCATGTCCTAGACAGGTTTTACACTGGCT
1 AGGTCTTACACTGACTTCCATACATCGAGGCCAATGCCATGTCCTAGACAGGTCTTACACTGGCT
*
27034405 CTCACTTATCTGTGTCGATGCCATGTCCCAGACAGGTCTTACACTAACACACCTCAAGCTGATGT
66 CTCACTTATCTCTGTCGATGCCATGTCCCAGACAGGTCTTACACTAACACACCTCAAGCTGATGT
*
27034470 CATGTCCTAGACAGGTCTTACACTAGCTTGCATATCTTGAGGTTGATGCCGTGTACCAGAT
131 CATGTCCTAGACAGGTCTTACACTAGCTTGCATATCCTGAGGTTGATGCCGTGTACCAGAT
*
27034531 AGGTCTTACACTGACTTCCATACATTGAGGCCAATGCCATGTCCTAGACAGGTCTTACACTGGCT
1 AGGTCTTACACTGACTTCCATACATCGAGGCCAATGCCATGTCCTAGACAGGTCTTACACTGGCT
* * *
27034596 CTCACTTATCTCTGTCGATGCCATGTCCCAGATAGGTCTTACACTGACACACCTCAAGTTGATGT
66 CTCACTTATCTCTGTCGATGCCATGTCCCAGACAGGTCTTACACTAACACACCTCAAGCTGATGT
27034661 CATGTCCTAGACAGGTCTTACACTAGCTTGCATATCCTGAGGTTGATGCCGTGTACCAGAT
131 CATGTCCTAGACAGGTCTTACACTAGCTTGCATATCCTGAGGTTGATGCCGTGTACCAGAT
* * ***
27034722 AGGTCTTACACTGTC-TCTCAT-CTATCGATGTGGATGCCATGTCCTAGACAGGTCTTACACT
1 AGGTCTTACACTGACTTC-CATAC-ATCGAGGCCAATGCCATGTCCTAGACAGGTCTTACACT
27034783 AGCACACACA
Statistics
Matches: 237, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
190 3 0.01
191 234 0.99
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (191 bp):
AGGTCTTACACTGACTTCCATACATCGAGGCCAATGCCATGTCCTAGACAGGTCTTACACTGGCT
CTCACTTATCTCTGTCGATGCCATGTCCCAGACAGGTCTTACACTAACACACCTCAAGCTGATGT
CATGTCCTAGACAGGTCTTACACTAGCTTGCATATCCTGAGGTTGATGCCGTGTACCAGAT
Found at i:27038236 original size:29 final size:29
Alignment explanation
Indices: 27038203--27038363 Score: 196
Period size: 29 Copynumber: 5.6 Consensus size: 29
27038193 GTGACGAGAT
*
27038203 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
27038232 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
27038261 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
27038290 CGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* ** * * ***
27038319 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
27038348 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
27038364 GGCTTAAATT
Statistics
Matches: 118, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 118 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:27038350 original size:87 final size:87
Alignment explanation
Indices: 27038204--27038362 Score: 219
Period size: 87 Copynumber: 1.8 Consensus size: 87
27038194 TGACGAGATT
* * * * * *
27038204 GGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTA
1 GGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCGAGCTCGAAAGATATGGCACTA
27038269 AGTGTGCATGCTGGAAAAATAC
66 AGTGTGCATGCTGGAAAAATAC
** * *
27038291 GGCACTAAGTGTGCATGCTGGAAAAATACGGCACTGGGTGTGCGAGCTCGAAGGGTATGGCACTA
1 GGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCGAGCTCGAAAGATATGGCACTA
*
27038356 TGTGTGC
66 AGTGTGC
27038363 GGGCTTAAAT
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
87 61 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (87 bp):
GGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCGAGCTCGAAAGATATGGCACTA
AGTGTGCATGCTGGAAAAATAC
Found at i:27044266 original size:40 final size:40
Alignment explanation
Indices: 27044221--27044387 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
27044211 CGGAATATAA
27044221 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
27044261 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
27044301 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
27044341 CCGGATATAATTTCCAGCATAATTGTCTTCGGGT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
27044380 CCGGATAT
1 CCGGATAT
27044388 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 13 0.13
40 90 0.87
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:27044371 original size:80 final size:79
Alignment explanation
Indices: 27044237--27044385 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
27044227 ATAATCACGT
*
27044237 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGT-TTAGCC
27044302 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
27044317 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGTTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGTTTAGC
27044380 CCGGAT
64 CCGGAT
27044386 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 14 0.23
80 47 0.77
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.28
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTTTAGCCC
GGATGTAGCCACTA
Found at i:27055335 original size:40 final size:39
Alignment explanation
Indices: 27055171--27055353 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
27055161 AAATTGAATG
* * *
27055171 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * *
27055211 ATA-CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
27055250 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
27055290 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
27055329 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
27055354 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 24, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
36 4 0.04
37 2 0.02
38 2 0.02
39 21 0.19
40 84 0.74
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:27055336 original size:80 final size:80
Alignment explanation
Indices: 27055214--27055362 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
27055204 GGAAATTATA
* * * *
27055214 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
27055279 TGCGAGTCATTCTAT
66 TGCGAGTCATTCTAT
* * * * * * *
27055294 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGCATTC
27055358 GTGCG
65 GTGCG
27055363 GGTTACCATA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATTCTAT
Found at i:27056818 original size:20 final size:20
Alignment explanation
Indices: 27056793--27056837 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
27056783 CGGGGTGTTA
27056793 CACATGACATGTATGATATG
1 CACATGACATGTATGATATG
*
27056813 CACATGATATGTATGATATG
1 CACATGACATGTATGATATG
27056833 CACAT
1 CACAT
27056838 TGAGATGTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.31
Consensus pattern (20 bp):
CACATGACATGTATGATATG
Found at i:27056919 original size:24 final size:24
Alignment explanation
Indices: 27056892--27057057 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
27056882 GAGGAAGTGA
*
27056892 AAAAGGGCTTATGCCTCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
27056916 AAAA-GGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
27056939 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
27056963 AAAAGGGCTTACGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
27056987 -AAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
27057010 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
27057034 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
27057058 ATGAAAGCAG
Statistics
Matches: 130, Mismatches: 8, Indels: 7
0.90 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 76 0.58
25 11 0.08
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:27056961 original size:47 final size:48
Alignment explanation
Indices: 27056892--27057057 Score: 239
Period size: 47 Copynumber: 3.5 Consensus size: 48
27056882 GAGGAAGTGA
*
27056892 AAAAGGGCTTATGCCTCAGTTATCAAAA-GGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
*
27056939 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
* * *
27056987 -AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
*
27057034 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
27057058 ATGAAAGCAG
Statistics
Matches: 108, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 70 0.65
48 27 0.25
49 11 0.10
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
Found at i:27057008 original size:71 final size:71
Alignment explanation
Indices: 27056892--27057057 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
27056882 GAGGAAGTGA
* * *
27056892 AAAAGGGCTTATGCCTCAGTTATCAAAAGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATCAAAAGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
27056957 GTTATC
66 GTTATC
* *
27056963 AAAAGGGCTTACGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATCAAAAGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
27057028 GTTATT
66 GTTATC
*
27057034 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
27057058 ATGAAAGCAG
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 75 0.87
72 11 0.13
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATCAAAAGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:27057285 original size:31 final size:31
Alignment explanation
Indices: 27057250--27057313 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
27057240 CGTTTACCGT
*
27057250 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
27057281 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
27057312 AA
1 AA
27057314 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:27062584 original size:40 final size:40
Alignment explanation
Indices: 27062529--27062778 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
27062519 AACATTGGAA
27062529 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
27062569 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
27062609 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
27062649 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
27062689 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
27062728 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
27062769 CTATATCCGG
1 ATATATCCGG
27062779 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:27070759 original size:40 final size:40
Alignment explanation
Indices: 27070704--27070953 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
27070694 AACATTGGAA
27070704 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
27070744 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
27070784 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
27070824 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
27070864 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
27070903 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
27070944 CTATATCCGG
1 ATATATCCGG
27070954 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:27072916 original size:28 final size:28
Alignment explanation
Indices: 27072875--27072940 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
27072865 TAGAACACGA
*
27072875 AATTA-CCCTTAAAGAGCAAAATTACCG
1 AATTACCCCTAAAAGAGCAAAATTACCG
27072902 AATTACCCCTAAAAGAGCAAAATTACCG
1 AATTACCCCTAAAAGAGCAAAATTACCG
27072930 -ATATACCCCTA
1 AAT-TACCCCTA
27072941 GGGTTTTAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
27 7 0.19
28 29 0.81
ACGTcount: A:0.44, C:0.26, G:0.09, T:0.21
Consensus pattern (28 bp):
AATTACCCCTAAAAGAGCAAAATTACCG
Found at i:27074528 original size:64 final size:64
Alignment explanation
Indices: 27074423--27074630 Score: 179
Period size: 67 Copynumber: 3.2 Consensus size: 64
27074413 CATCATGTGT
*
27074423 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACAAG--A-TA-AATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
27074488 TAG
62 TAG
** * * * * * * *
27074491 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACAAGATAAATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGT
27074556 AG
63 AG
* * ** *
27074558 ACAAGAGAGCTACAAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAATGTTCACCATGT-G
1 ACAAGAGAGCTACAAGATAAA-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
27074620 TACAAGAGAGC
1 -ACAAGAGAGC
27074631 CGAACTATAT
Statistics
Matches: 113, Mismatches: 22, Indels: 15
0.75 0.15 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.17
64 20 0.18
65 10 0.09
66 17 0.15
67 30 0.27
68 16 0.14
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (64 bp):
ACAAGAGAGCTACAAGATAAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:27078231 original size:24 final size:25
Alignment explanation
Indices: 27078183--27078231 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
27078173 TCACATACGG
27078183 GGTTCATTCATAAGATTTTTTCGTA
1 GGTTCATTCATAAGATTTTTTCGTA
27078208 GGTTCATTCATAAGA-TTTTTCGTA
1 GGTTCATTCATAAGATTTTTTCGTA
27078232 CATACTTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 9 0.38
25 15 0.62
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.47
Consensus pattern (25 bp):
GGTTCATTCATAAGATTTTTTCGTA
Found at i:27080656 original size:51 final size:51
Alignment explanation
Indices: 27080572--27080719 Score: 217
Period size: 51 Copynumber: 2.9 Consensus size: 51
27080562 CAGATACACG
* *
27080572 GTGGCATTCACATAGTACCACCCTTGTAG-CCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAA
* * *
27080623 GTGTCCTTCACCTAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* *
27080674 GTGGCCTTCACATAGTACCACACTTATGTCCAAAGTTATTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
27080720 CTAAGGTTCA
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
50 1 0.01
51 85 0.99
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:27086597 original size:40 final size:40
Alignment explanation
Indices: 27086535--27086716 Score: 215
Period size: 40 Copynumber: 4.6 Consensus size: 40
27086525 TATTCGGATG
27086535 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** * * *
27086575 ATGTCCGGGCCAAGTCCTGAAGGCATTTGTGCGAGTTACC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
27086615 ATAACCGGGCTAAGTCCCGAAGGTAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * **
27086655 ATAACTGGGCTAAGTCCAGAAGGCATTTAAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
27086695 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
27086717 TACTTGGTTT
Statistics
Matches: 118, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 15 0.13
40 103 0.87
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:27094556 original size:40 final size:40
Alignment explanation
Indices: 27094497--27094678 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 40
27094487 TATTCGGATG
27094497 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** *
27094537 ATGTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
27094577 ATAACCGGGCTAAGTCTCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
**
27094617 ATAACCGGGCTAAGTCCCGAAGGCATTTAAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
27094657 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
27094679 TACTTGGTTT
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 16 0.13
40 110 0.87
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:27096415 original size:39 final size:39
Alignment explanation
Indices: 27096303--27096534 Score: 306
Period size: 39 Copynumber: 5.9 Consensus size: 39
27096293 TCGTTCAAAC
* * ** * *
27096303 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* *
27096343 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* *
27096383 GCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACCATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
27096422 GCCTTCGGGCTTAGCCCGGATATCACT-ACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCA-TAACTCGCACAATT
*
27096461 GCCTTCGGGCTTAGCCCGGATATCATAATTCGCAC-ATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
* *
27096499 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
27096535 TTCATACACA
Statistics
Matches: 173, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
38 38 0.22
39 93 0.54
40 42 0.24
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:27100540 original size:49 final size:48
Alignment explanation
Indices: 27100484--27100658 Score: 190
Period size: 49 Copynumber: 3.5 Consensus size: 48
27100474 CTGGTATGCA
27100484 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTAT-TCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAA-TATCT-GGTACACG
* * * * *
27100533 TAGTAGCCTGCACTTAGTACTAACACACGTGTCCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACT-ACACATGCGACC-AA-TATCTGGTACACG
* * * *
27100584 TAGTAGCCTACACTTAGTACTACACATACGGCCAATAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAAT-ATCTGGTACACG
* *
27100633 GAGTAGCCTGCACTTACTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
27100659 CGTGACCTCA
Statistics
Matches: 105, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
49 56 0.53
50 17 0.16
51 31 0.30
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATATCTGGTACACG
Found at i:27104167 original size:50 final size:50
Alignment explanation
Indices: 27104069--27104802 Score: 601
Period size: 50 Copynumber: 14.6 Consensus size: 50
27104059 CGGGCACGCA
* * * * * * * * *
27104069 TAGTAGCCTGCACTTAGTACTACATATGCGACCTATCAATATGGTACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
* *
27104119 TAGTAGCCTACACTTAATACTACACACGTGACTTAACCATCTGATACACT
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
* * * * *
27104169 TAGTATCCTACACATAGTACTACATACGTGACTCAACCATCTGATGCACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
* * ** * * ** * *
27104219 TAGTAGCCTACACTTAGTACTACACATGTGA-TCAAAGTTAACGGGCACGCA
1 TAGTAGCCTACACTTAGTACTACACACGTGACT-TAA-CCATCTGATACACG
** * * * * * * *
27104270 TAGTAGCCTGTACTTAGTACTACACATGCGACATATCAATCTGGTACACA
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
* * *
27104320 TAGTAGCCTGCACTTAATACTACACACGTGACTTAACCATCTGATACACT
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
* * * *
27104370 TAGTATCCTACACATAGTACTACATACGTGACTTAACCATCTGATACATG
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
* * ** * * ** * *
27104420 TAGTAGCCTACACTTAGTACTACACACATGA-TCAAAGTTAACGGGCACGCA
1 TAGTAGCCTACACTTAGTACTACACACGTGACT-TAA-CCATCTGATACACG
* * * * * * *
27104471 TAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTATACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
* * * *
27104521 TAGTAGCCTGCACTTAATACTACACACGTGACTTAACCACCTGATACACT
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
* * * * *
27104571 TAGTATCCTACACATAGTACTACATATGTGACTTAACCATCTGATACATG
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
** * * * * *
27104621 TAGTAGCCTACACTTAGTACTACACACGTGA-TTGAAGTTAACGGTTACGCA
1 TAGTAGCCTACACTTAGTACTACACACGTGACTT-AA-CCATCTGATACACG
** * * * * * * * *
27104672 TAGTAGCCTGTACTTTGTACTACACATGGGACCTATCAATCTGGTACATG
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
*
27104722 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
* *
27104772 TAGTAGCCTGCACTTAGTATTACACACGTGA
1 TAGTAGCCTACACTTAGTACTACACACGTGA
27104803 TCGAAGTTAA
Statistics
Matches: 530, Mismatches: 145, Indels: 18
0.76 0.21 0.03
Matches are distributed among these distances:
49 4 0.01
50 424 0.80
51 101 0.19
52 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
Found at i:27104327 original size:201 final size:201
Alignment explanation
Indices: 27104012--27104802 Score: 1285
Period size: 201 Copynumber: 3.9 Consensus size: 201
27104002 ATTAATCAGG
* *
27104012 TACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTTAACGGGCACGCATAGTAGCC
1 TACACGTAGTAGCCTACACTTAGTACTACACACGTGATCAAAGTTAACGGGCACGCATAGTAGCC
* * *
27104077 TGCACTTAGTACTACATATGCGACCTATCAATATGGTACACGTAGTAGCCTACACTTAATACTAC
66 TGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAATACTAC
*
27104142 ACACGTGACTTAACCATCTGATACACTTAGTATCCTACACATAGTACTACATACGTGACTCAACC
131 ACACGTGACTTAACCATCTGATACACTTAGTATCCTACACATAGTACTACATACGTGACTTAACC
27104207 ATCTGA
196 ATCTGA
* *
27104213 TGCACGTAGTAGCCTACACTTAGTACTACACATGTGATCAAAGTTAACGGGCACGCATAGTAGCC
1 TACACGTAGTAGCCTACACTTAGTACTACACACGTGATCAAAGTTAACGGGCACGCATAGTAGCC
* * *
27104278 TGTACTTAGTACTACACATGCGACATATCAATCTGGTACACATAGTAGCCTGCACTTAATACTAC
66 TGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAATACTAC
27104343 ACACGTGACTTAACCATCTGATACACTTAGTATCCTACACATAGTACTACATACGTGACTTAACC
131 ACACGTGACTTAACCATCTGATACACTTAGTATCCTACACATAGTACTACATACGTGACTTAACC
27104408 ATCTGA
196 ATCTGA
* *
27104414 TACATGTAGTAGCCTACACTTAGTACTACACACATGATCAAAGTTAACGGGCACGCATAGTAGCC
1 TACACGTAGTAGCCTACACTTAGTACTACACACGTGATCAAAGTTAACGGGCACGCATAGTAGCC
* *
27104479 TACACTTAGTACTACACATGCGACCTATCAATCTGGTATACGTAGTAGCCTGCACTTAATACTAC
66 TGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAATACTAC
* *
27104544 ACACGTGACTTAACCACCTGATACACTTAGTATCCTACACATAGTACTACATATGTGACTTAACC
131 ACACGTGACTTAACCATCTGATACACTTAGTATCCTACACATAGTACTACATACGTGACTTAACC
27104609 ATCTGA
196 ATCTGA
* ** **
27104615 TACATGTAGTAGCCTACACTTAGTACTACACACGTGATTGAAGTTAACGGTTACGCATAGTAGCC
1 TACACGTAGTAGCCTACACTTAGTACTACACACGTGATCAAAGTTAACGGGCACGCATAGTAGCC
* * * * *
27104680 TGTACTTTGTACTACACATGGGACCTATCAATCTGGTACATGTAGTAGCCTGCACTTAGTACTAC
66 TGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAATACTAC
* * * * * *
27104745 ACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTATTACACACGTGA
131 ACACGTGACTTAACCATCTGATACACTTAGTATCCTACACATAGTACTACATACGTGA
27104803 TCGAAGTTAA
Statistics
Matches: 550, Mismatches: 40, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
201 550 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (201 bp):
TACACGTAGTAGCCTACACTTAGTACTACACACGTGATCAAAGTTAACGGGCACGCATAGTAGCC
TGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAATACTAC
ACACGTGACTTAACCATCTGATACACTTAGTATCCTACACATAGTACTACATACGTGACTTAACC
ATCTGA
Found at i:27104676 original size:151 final size:151
Alignment explanation
Indices: 27104012--27104899 Score: 608
Period size: 151 Copynumber: 5.9 Consensus size: 151
27104002 ATTAATCAGG
* * * *
27104012 TACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTTAACGGGCACGCATAGTAGCC
1 TACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAACGGGTACGCATAGTAGCC
* * * * ** * * * *
27104077 TGCACTTAGTACTACATATGCGACCTATCAATATGGTACACGTAGTAGCCTACACTTAATACTAC
66 TGCACTTAGTACTACACACGGGACCTAACAACCTGATACATGTAGTAGCCTACACATAGTACTAC
27104142 ACACGTGACTTAACCATCTGA
131 ACACGTGACTTAACCATCTGA
* * * * ** * * * * * *
27104163 TACACTTAGTATCCTACACATAGTACTACATACGTGACTC-AA-CCATCTGATGCACGTAGTAGC
1 TACACGTAGTAGCCTACACTTAGTACTACACACGTGA-TCGAAGTTAACGGGTACGCATAGTAGC
* * * * * * ** ** ** *
27104226 CTACACTTAGTACTACACATGTGATCAAAGTTAACGGGCACGCA--TAGTAGCCTGTACTTAGTA
65 CTGCACTTAGTACTACACACGGGACCTAA--CAACCTG-ATACATGTAGTAGCCTACACATAGTA
* * * * * *
27104289 CTACACATGCGACATATCAATCTGG
127 CTACACACGTGACTTAACCATCTGA
* * * * ** * * * * * *
27104314 TACACATAGTAGCCTGCACTTAATACTACACACGTGA-CTTAA-CCATCTGATACACTTAGTATC
1 TACACGTAGTAGCCTACACTTAGTACTACACACGTGATC-GAAGTTAACGGGTACGCATAGTAGC
* * * * * * * *
27104377 CTACACATAGTACTACATACGTGACTTAACCATCTGATACATGTAGTAGCCTACACTTAGTACTA
65 CTGCACTTAGTACTACACACGGGACCTAACAACCTGATACATGTAGTAGCCTACACATAGTACTA
* * ** * * *
27104442 CACACATGA-TCAAAGTTAACGGG
130 CACACGTGACT-TAA-CCATCTGA
* * * * * ** * * ** *
27104465 CACGCATAGTAGCCTACACTTAGTACTACACATGCGA-CCTA-TCAATCTGGTATACGTAGTAGC
1 TACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTACGCATAGTAGC
* * * * *
27104528 CTGCACTTAATACTACACACGTGACTTAACCACCTGATACACT-TAGTATCCTACACATAGTACT
65 CTGCACTTAGTACTACACACGGGACCTAACAACCTGATACA-TGTAGTAGCCTACACATAGTACT
* *
27104592 ACATATGTGACTTAACCATCTGA
129 ACACACGTGACTTAACCATCTGA
* * *
27104615 TACATGTAGTAGCCTACACTTAGTACTACACACGTGATTGAAGTTAACGGTTACGCATAGTAGCC
1 TACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAACGGGTACGCATAGTAGCC
* * * * * * * *
27104680 TGTACTTTGTACTACACATGGGACCTATCAATCTGGTACATGTAGTAGCCTGCACTTAGTACTAC
66 TGCACTTAGTACTACACACGGGACCTAACAACCTGATACATGTAGTAGCCTACACATAGTACTAC
27104745 ACACGTGACTTAACCATCTGA
131 ACACGTGACTTAACCATCTGA
* * *
27104766 TACACGTAGTAGCCTGCACTTAGTATTACACACGTGATCGAAGTTAATGGGTACGCATAGTAGCC
1 TACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAACGGGTACGCATAGTAGCC
* * ** * * * *
27104831 TGCACTTAGTACTACACATGCGACCTATGAATCTGGTACATGTAGTAGCCTGCACCTAGTACTAC
66 TGCACTTAGTACTACACACGGGACCTAACAACCTGATACATGTAGTAGCCTACACATAGTACTAC
27104896 ACAC
131 ACAC
27104900 AATGTTAATA
Statistics
Matches: 579, Mismatches: 142, Indels: 32
0.77 0.19 0.04
Matches are distributed among these distances:
148 3 0.01
149 3 0.01
150 100 0.17
151 461 0.80
152 10 0.02
153 2 0.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (151 bp):
TACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAACGGGTACGCATAGTAGCC
TGCACTTAGTACTACACACGGGACCTAACAACCTGATACATGTAGTAGCCTACACATAGTACTAC
ACACGTGACTTAACCATCTGA
Found at i:27109964 original size:68 final size:70
Alignment explanation
Indices: 27109892--27110089 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
27109882 ACACCCTGTA
* * * *
27109892 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
27109954 ATAAAT
65 ATAAAT
*
27109960 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
27110025 ATAAAT
65 ATAAAT
* * *
27110031 GTAGCTGGGTCGCATGCGTGATTCCAAGTGACGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGA-AGACACCATGTAGACAAGAGAGCTACG
27110090 AGACAAATCG
Statistics
Matches: 118, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
68 24 0.20
69 3 0.03
70 1 0.01
71 90 0.76
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:27110015 original size:71 final size:71
Alignment explanation
Indices: 27109926--27110089 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
27109916 GAGATGTATC
27109926 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
27109991 AGGACA
66 AGGACA
*
27109997 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
27110062 CGGACA
66 AGGACA
27110068 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
27110090 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:27113342 original size:51 final size:51
Alignment explanation
Indices: 27113266--27113499 Score: 353
Period size: 51 Copynumber: 4.6 Consensus size: 51
27113256 GGTGGCGTTC
* * *
27113266 ACCACCCTTGTAG-CCAAAGCTATTTTATTCACAAAGTGGCCTTCACCTCGT
1 ACCACACTTGT-GTCCAAAGCTATTTTATTCACAAAGTGGCCTTCACATAGT
*
27113317 ACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGAGGCCTTCACATAGT
1 ACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGGCCTTCACATAGT
* * *
27113368 ACCACACTTGTGTCCAAAGCTATTATGTTCACAAAGTGGCCTTCAGATAGT
1 ACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGGCCTTCACATAGT
* *
27113419 ACCACACTTGTGTCCAAAGCTATTATATTCACAAAGTGGCCTTCACGTAGT
1 ACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGGCCTTCACATAGT
* *
27113470 ACCACACTTGTGTTCAAAGTTATTTTATTC
1 ACCACACTTGTGTCCAAAGCTATTTTATTC
27113500 TTAAGGTTCA
Statistics
Matches: 168, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
50 1 0.01
51 167 0.99
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.31
Consensus pattern (51 bp):
ACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGGCCTTCACATAGT
Found at i:27116090 original size:18 final size:18
Alignment explanation
Indices: 27116067--27116103 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
27116057 TCCATGGAGA
27116067 AAATTTCAAAAATACCTT
1 AAATTTCAAAAATACCTT
27116085 AAATTTCAAAAATACCTT
1 AAATTTCAAAAATACCTT
27116103 A
1 A
27116104 TCACTGATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.32
Consensus pattern (18 bp):
AAATTTCAAAAATACCTT
Found at i:27125519 original size:32 final size:32
Alignment explanation
Indices: 27125441--27125520 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 32
27125431 TTTAAATCGA
* *
27125441 TAAAAAAAATT-AATTTAACATATTTTAAAAT
1 TAAAAAAATTTAAATTTAACATAATTTAAAAT
*
27125472 TAAAAAAATTTAAATTTAACTTAATTTAAAA-
1 TAAAAAAATTTAAATTTAACATAATTTAAAAT
**
27125503 TAACGAAATTTCAAATTT
1 TAAAAAAATTT-AAATTT
27125521 CGTCTTACCA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
31 19 0.45
32 23 0.55
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.39
Consensus pattern (32 bp):
TAAAAAAATTTAAATTTAACATAATTTAAAAT
Found at i:27125673 original size:18 final size:19
Alignment explanation
Indices: 27125648--27125699 Score: 72
Period size: 18 Copynumber: 2.8 Consensus size: 19
27125638 AACTTGAGGA
27125648 AATTGAGAGAATTA-AAAG
1 AATTGAGAGAATTAGAAAG
*
27125666 AGTTGAGAG-ATTAGAAAG
1 AATTGAGAGAATTAGAAAG
*
27125684 AATTGAGAGAGTTAGA
1 AATTGAGAGAATTAGA
27125700 TTTGAGCGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 4 0.14
18 20 0.69
19 5 0.17
ACGTcount: A:0.48, C:0.00, G:0.29, T:0.23
Consensus pattern (19 bp):
AATTGAGAGAATTAGAAAG
Found at i:27131610 original size:40 final size:40
Alignment explanation
Indices: 27131565--27131732 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
27131555 TCGGATACAA
27131565 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTA-GCACGAATGCCTTCGGGTCTTAGC
** * * *
27131605 CCGGATATAAAGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
27131645 CCGAATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
** *
27131685 CCGGATATAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
27131725 CCGGATAT
1 CCGGATAT
27131733 CATTCAATTG
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 107 0.98
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:27131705 original size:80 final size:80
Alignment explanation
Indices: 27131569--27131732 Score: 238
Period size: 80 Copynumber: 2.0 Consensus size: 80
27131559 ATACAACCGG
* * *
27131569 ATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAAGACTCGCACAAATGCCTT
1 ATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAACACTAGCACAAATGCCTT
*
27131634 CGGGTATTAGCCCGA
66 CGGGTATTAACCCGA
* ** *
27131649 ATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAATTGCCTT
1 ATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAACACTAGCACAAATGCCTT
* *
27131714 CGGGTCTTAACCCGG
66 CGGGTATTAACCCGA
27131729 ATAT
1 ATAT
27131733 CATTCAATTG
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 74 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
ATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAACACTAGCACAAATGCCTT
CGGGTATTAACCCGA
Found at i:27131838 original size:124 final size:125
Alignment explanation
Indices: 27131689--27131914 Score: 319
Period size: 124 Copynumber: 1.8 Consensus size: 125
27131679 CTTAGCCCGG
* * * * * *
27131689 ATATAGTCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATATCATTCAATTGCTCATGCACAC
1 ATATAATCACTAGCACAATTGCCTTCGGGACTTAACCCGGATACCATTCAAATACTCATACACAC
* *
27131754 ATACATCAATAATCATTACACATTCAT-GTTTCATTTTCGTTACTAAGGCTCAAACACAA
66 ATACATCAATAATCATTACACATCCATAATTTCATTTTCGTTACTAAGGCTCAAACACAA
* * *
27131813 ATATAATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACAC
1 ATATAATCACTAGCACAATTGCCTTCGGGACTTAACCCGGATACCATTCAAATACTCATACACAC
* * *
27131878 GTATATCAGTAATCATTACACATCCATAATTTCATTT
66 ATACATCAATAATCATTACACATCCATAATTTCATTT
27131915 CACATAATTC
Statistics
Matches: 87, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
124 79 0.91
125 8 0.09
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.31
Consensus pattern (125 bp):
ATATAATCACTAGCACAATTGCCTTCGGGACTTAACCCGGATACCATTCAAATACTCATACACAC
ATACATCAATAATCATTACACATCCATAATTTCATTTTCGTTACTAAGGCTCAAACACAA
Found at i:27139583 original size:40 final size:40
Alignment explanation
Indices: 27139538--27139704 Score: 214
Period size: 40 Copynumber: 4.2 Consensus size: 40
27139528 CGGAATACAA
27139538 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTA-GCACGAATGCCTTCGGGTCTTAGC
* * * *
27139578 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* *
27139618 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
** *
27139658 CCGGATA-AGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
27139697 CCGGATAT
1 CCGGATAT
27139705 CATTCAATTG
Statistics
Matches: 111, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.02
39 31 0.28
40 78 0.70
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:27143371 original size:39 final size:40
Alignment explanation
Indices: 27143327--27143407 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 40
27143317 TATTTTAGTA
27143327 TTTTAATTTT-TTTAAGGTTTATATTGATATTTAACCCTT
1 TTTTAATTTTATTTAAGGTTTATATTGATATTTAACCCTT
*
27143366 TTTTAATTTTACTTTAAGGTTTATATTGATATTTAACGCTT
1 TTTTAATTTTA-TTTAAGGTTTATATTGATATTTAACCCTT
27143407 T
1 T
27143408 CTTTGTCTCG
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
39 10 0.26
41 29 0.74
ACGTcount: A:0.26, C:0.07, G:0.09, T:0.58
Consensus pattern (40 bp):
TTTTAATTTTATTTAAGGTTTATATTGATATTTAACCCTT
Found at i:27143995 original size:21 final size:21
Alignment explanation
Indices: 27143971--27144018 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
27143961 CATTTTGTTT
* *
27143971 ATTTTGTTTATTTGTAACTTG
1 ATTTTCTTCATTTGTAACTTG
* *
27143992 ATTTACTTCCTTTGTAACTTG
1 ATTTTCTTCATTTGTAACTTG
27144013 ACTTTT
1 A-TTTT
27144019 AAAGTTAATA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.19, C:0.12, G:0.10, T:0.58
Consensus pattern (21 bp):
ATTTTCTTCATTTGTAACTTG
Found at i:27151145 original size:16 final size:16
Alignment explanation
Indices: 27151114--27151147 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
27151104 TTTCATAAAC
**
27151114 ATAAATATTTTTTTAT
1 ATAAATATTTGCTTAT
27151130 ATAAATATTTGCTTAT
1 ATAAATATTTGCTTAT
27151146 AT
1 AT
27151148 TAATTTGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (16 bp):
ATAAATATTTGCTTAT
Found at i:27151166 original size:35 final size:36
Alignment explanation
Indices: 27151121--27151194 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 36
27151111 AACATAAATA
* *
27151121 TTTTTTTATATAAATATTTGCTTATA-TTA-ATTTG
1 TTTTTTTATATAAATAATTACTTATATTTATATTTG
* *
27151155 TTTTATTTATATATATAATTATTTATATTTATATTTG
1 TTTT-TTTATATAAATAATTACTTATATTTATATTTG
27151192 TTT
1 TTT
27151195 GCTAACATGA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
34 4 0.12
35 18 0.55
36 3 0.09
37 8 0.24
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.65
Consensus pattern (36 bp):
TTTTTTTATATAAATAATTACTTATATTTATATTTG
Found at i:27151178 original size:16 final size:16
Alignment explanation
Indices: 27151157--27151187 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
27151147 TTAATTTGTT
27151157 TTATTTATATATATAA
1 TTATTTATATATATAA
*
27151173 TTATTTATATTTATA
1 TTATTTATATATATA
27151188 TTTGTTTGCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTATTTATATATATAA
Found at i:27151543 original size:82 final size:81
Alignment explanation
Indices: 27151346--27151581 Score: 215
Period size: 81 Copynumber: 2.9 Consensus size: 81
27151336 GGGTTTATTC
* *
27151346 CCGCCGTTCAACAGATTTTATTCCT-TTTTTGA-TTTGTTCCCAAACGAGAATTAATTGAATAAT
1 CCGCCGTTCAACAGATTTTATT--TGATTTTGATTTTGTTTCCAAACGAGAATTAATTGAATAAT
* *
27151409 TTGTTTCGAAATTTATTC
64 TTGTTTCGAAATTCATTA
* * * * * * * * *
27151427 CCGTCATTTAAAAAATTTTATTCGATTTTGATTTTGTTTCCACACGTGAATTAATTGATTAATTC
1 CCGCCGTTCAACAGATTTTATTTGATTTTGATTTTGTTTCCAAACGAGAATTAATTGAATAATT-
**
27151492 TGTTTCGGGATTCATTA
65 TGTTTCGAAATTCATTA
* * * ** * *
27151509 CTGCCGTTCAACAGATTTTATTTGATTGTGATTTTGTTTCTAAAAAAAGATTTAATTAAATAATT
1 CCGCCGTTCAACAGATTTTATTTGATTTTGATTTTGTTTC-CAAACGAGAATTAATTGAATAATT
27151574 CTGTTTCG
65 -TGTTTCG
27151582 GGATTTATTC
Statistics
Matches: 120, Mismatches: 31, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
80 6 0.05
81 45 0.38
82 45 0.38
83 24 0.20
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.45
Consensus pattern (81 bp):
CCGCCGTTCAACAGATTTTATTTGATTTTGATTTTGTTTCCAAACGAGAATTAATTGAATAATTT
GTTTCGAAATTCATTA
Found at i:27151610 original size:83 final size:82
Alignment explanation
Indices: 27151396--27151677 Score: 235
Period size: 83 Copynumber: 3.4 Consensus size: 82
27151386 CAAACGAGAA
* * *
27151396 TTAATTGAATAATT-TGTTTCGAAATTTATTCCCGTCATTTAAAAAATTTTATTCGATTTTGATT
1 TTAATTAAATAATTCTGTTTCGAGATTTATTCCCGTCA-TTAACAAATTTTATTCGATTTTGATT
* * *** *
27151460 TTGTTTC-CACACGTGAA
65 TTGTTTCTAAAAAAAGAT
* * * * * * * * * * *
27151477 TTAATTGATTAATTCTGTTTCGGGATTCATTACTGCCGTTCAACAGATTTTATTTGATTGTGATT
1 TTAATTAAATAATTCTGTTTCGAGATTTATTCCCGTCATT-AACAAATTTTATTCGATTTTGATT
27151542 TTGTTTCTAAAAAAAGAT
65 TTGTTTCTAAAAAAAGAT
* * *
27151560 TTAATTAAATAATTCTGTTTCGGGATTTATTCCCATCATTAGACATATTTTATTCGATTTTGATT
1 TTAATTAAATAATTCTGTTTCGAGATTTATTCCCGTCATTA-ACAAATTTTATTCGATTTTGATT
* *
27151625 TTGAGTTTGCTTCCATAAGAAGAT
65 TT--GTTT-C-T--AAAAAAAGAT
*
27151649 TTAATTAAATAATTTTGTTTCGAGATTTA
1 TTAATTAAATAATTCTGTTTCGAGATTTA
27151678 ATCCTGTCGT
Statistics
Matches: 158, Mismatches: 33, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
81 15 0.09
82 44 0.28
83 58 0.37
85 4 0.03
86 1 0.01
87 1 0.01
89 35 0.22
ACGTcount: A:0.29, C:0.11, G:0.13, T:0.47
Consensus pattern (82 bp):
TTAATTAAATAATTCTGTTTCGAGATTTATTCCCGTCATTAACAAATTTTATTCGATTTTGATTT
TGTTTCTAAAAAAAGAT
Found at i:27157101 original size:24 final size:24
Alignment explanation
Indices: 27156972--27157101 Score: 122
Period size: 24 Copynumber: 5.4 Consensus size: 24
27156962 AAGCTCCTCC
*
27156972 TGAGCTGATAGACAGTAAGCTC-TA
1 TGAGCTGATA-ATAGTAAGCTCTTA
* *
27156996 TTGAGCTGA-AAT-TTGAAGCTCTGA
1 -TGAGCTGATAATAGT-AAGCTCTTA
* * *
27157020 CGAGCTAAAAATAGTAAGCTCTTA
1 TGAGCTGATAATAGTAAGCTCTTA
*
27157044 TGAGATGATAATAGTAAGCTCTTA
1 TGAGCTGATAATAGTAAGCTCTTA
* * *
27157068 CGAGCCGATAATAGTAAACTCTTA
1 TGAGCTGATAATAGTAAGCTCTTA
27157092 TGAGCTGATA
1 TGAGCTGATA
27157102 TATTGGTAAG
Statistics
Matches: 84, Mismatches: 17, Indels: 9
0.76 0.15 0.08
Matches are distributed among these distances:
22 1 0.01
23 13 0.15
24 61 0.73
25 9 0.11
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (24 bp):
TGAGCTGATAATAGTAAGCTCTTA
Found at i:27164839 original size:24 final size:22
Alignment explanation
Indices: 27164812--27164858 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
27164802 ATTTTTTATT
27164812 TAAATATGGTGTTTTACATAAATA
1 TAAATAT-GTG-TTTACATAAATA
* *
27164836 TAAATATTTGTTTATATAAATA
1 TAAATATGTGTTTACATAAATA
27164858 T
1 T
27164859 TTGCTTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 12 0.57
23 2 0.10
24 7 0.33
ACGTcount: A:0.43, C:0.02, G:0.09, T:0.47
Consensus pattern (22 bp):
TAAATATGTGTTTACATAAATA
Found at i:27164854 original size:16 final size:16
Alignment explanation
Indices: 27164833--27164868 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
27164823 TTTTACATAA
*
27164833 ATATAAATATTTGTTT
1 ATATAAATATTTGCTT
27164849 ATATAAATATTTGCTT
1 ATATAAATATTTGCTT
27164865 ATAT
1 ATAT
27164869 TAATTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.53
Consensus pattern (16 bp):
ATATAAATATTTGCTT
Found at i:27164906 original size:24 final size:23
Alignment explanation
Indices: 27164864--27164916 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
27164854 AATATTTGCT
27164864 TATATTAATTTATTTTATTTATA
1 TATATTAATTTATTTTATTTATA
27164887 TATATATAA-TTATTTATATTTATA
1 TATAT-TAATTTATTT-TATTTATA
*
27164911 TTTATT
1 TATATT
27164917 CGCTAACGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 12 0.44
24 15 0.56
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
TATATTAATTTATTTTATTTATA
Found at i:27165132 original size:22 final size:22
Alignment explanation
Indices: 27165107--27165149 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
27165097 AAATTATCTT
27165107 TAAAATAATA-TAATTTTTTATG
1 TAAAATAATAGT-ATTTTTTATG
*
27165129 TAAAGTAATAGTATTTTTTAT
1 TAAAATAATAGTATTTTTTAT
27165150 CATTATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (22 bp):
TAAAATAATAGTATTTTTTATG
Found at i:27166306 original size:9 final size:9
Alignment explanation
Indices: 27166288--27166360 Score: 74
Period size: 9 Copynumber: 7.8 Consensus size: 9
27166278 ATTCATTATG
*
27166288 AAATTGTAA
1 AAATTATAA
27166297 AAATTATAA
1 AAATTATAA
*
27166306 AAATTACAAA
1 AAATTA-TAA
* *
27166316 GAAATCATTA
1 -AAATTATAA
27166326 AAATTATAA
1 AAATTATAA
27166335 AAATTATTAA
1 AAATTA-TAA
*
27166345 AATTTATAA
1 AAATTATAA
27166354 AAATTAT
1 AAATTAT
27166361 TAGAAATTAA
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
9 36 0.69
10 11 0.21
11 5 0.10
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (9 bp):
AAATTATAA
Found at i:27166328 original size:20 final size:18
Alignment explanation
Indices: 27166295--27166370 Score: 62
Period size: 19 Copynumber: 4.0 Consensus size: 18
27166285 ATGAAATTGT
* *
27166295 AAAAATTATAAAAATTACA
1 AAAAATCATTAAAATTA-A
*
27166314 AAGAAATCATTAAAATTAT
1 AA-AAATCATTAAAATTAA
* *
27166333 AAAAATTATTAAAATTTAT
1 AAAAATCATTAAAA-TTAA
*
27166352 AAAAATTATTAGAAATTAA
1 AAAAATCATTA-AAATTAA
27166371 TAGTTTTAGA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
18 11 0.22
19 22 0.45
20 16 0.33
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (18 bp):
AAAAATCATTAAAATTAA
Found at i:27166351 original size:10 final size:10
Alignment explanation
Indices: 27166294--27166369 Score: 70
Period size: 9 Copynumber: 7.9 Consensus size: 10
27166284 TATGAAATTG
27166294 TAAAAATTA-
1 TAAAAATTAT
*
27166303 TAAAAATTAC
1 TAAAAATTAT
* *
27166313 AAAGAAATCAT
1 TAA-AAATTAT
27166324 T-AAAATTA-
1 TAAAAATTAT
27166332 TAAAAATTAT
1 TAAAAATTAT
*
27166342 TAAAATTTA-
1 TAAAAATTAT
27166351 TAAAAATTAT
1 TAAAAATTAT
*
27166361 TAGAAATTA
1 TAAAAATTA
27166370 ATAGTTTTAG
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
8 1 0.02
9 29 0.54
10 19 0.35
11 5 0.09
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:27166368 original size:38 final size:39
Alignment explanation
Indices: 27166280--27166369 Score: 105
Period size: 38 Copynumber: 2.3 Consensus size: 39
27166270 TTGTGTAGAT
*
27166280 TCATTATGAAATTGTAAAAATTATAAAAATTACAAAGAAA
1 TCATTA-GAAATTATAAAAATTATAAAAATTACAAAGAAA
* *
27166320 TCATTA-AAATTATAAAAATTATTAAAATTTA-TAA-AAA
1 TCATTAGAAATTATAAAAATTA-TAAAAATTACAAAGAAA
*
27166357 TTATTAGAAATTA
1 TCATTAGAAATTA
27166370 ATAGTTTTAG
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
37 8 0.18
38 22 0.50
39 8 0.18
40 6 0.14
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.36
Consensus pattern (39 bp):
TCATTAGAAATTATAAAAATTATAAAAATTACAAAGAAA
Found at i:27168883 original size:19 final size:20
Alignment explanation
Indices: 27168855--27168902 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
27168845 AGCAGATTTG
*
27168855 GTATCAATAAAATGATA-AA
1 GTATCGATAAAATGATACAA
**
27168874 GTATCGATAAAATTTTACAA
1 GTATCGATAAAATGATACAA
27168894 GTATCGATA
1 GTATCGATA
27168903 CATTTTGGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.31
Consensus pattern (20 bp):
GTATCGATAAAATGATACAA
Found at i:27169294 original size:15 final size:15
Alignment explanation
Indices: 27169274--27169303 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
27169264 TACCTAAGGG
27169274 AGGCTAGTGCTAGAT
1 AGGCTAGTGCTAGAT
27169289 AGGCTAGTGCTAGAT
1 AGGCTAGTGCTAGAT
27169304 CAATTTTAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.33, T:0.27
Consensus pattern (15 bp):
AGGCTAGTGCTAGAT
Found at i:27187783 original size:40 final size:40
Alignment explanation
Indices: 27187675--27187844 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
27187665 CGGGATTTAA
* * * * *
27187675 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
27187715 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27187755 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27187795 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27187835 CCGGATATAT
1 CCGGATATAT
27187845 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:27195877 original size:40 final size:40
Alignment explanation
Indices: 27195769--27195938 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
27195759 CGGGATTTAA
* * * * *
27195769 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
27195809 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27195849 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27195889 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27195929 CCGGATATAT
1 CCGGATATAT
27195939 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:27208251 original size:60 final size:60
Alignment explanation
Indices: 27208163--27208299 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 60
27208153 CAGTGTTAAC
* * *
27208163 TGGGTCTTAGCCTATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATCAGAGTATAT
1 TGGGTC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTAT-AGA-TATAT
* * *
27208224 TGGGTCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGTCTAGATATAT
1 TGGGTCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTATAGATATAT
* *
27208284 TGGGCCTTGCCCATAT
1 TGGGTCTAGCCCATAT
27208300 TAACATAGTT
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
60 49 0.74
61 13 0.20
62 4 0.06
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (60 bp):
TGGGTCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTATAGATATAT
Found at i:27210219 original size:40 final size:40
Alignment explanation
Indices: 27210156--27210358 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
27210146 TGGAGTTTAA
** *
27210156 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
27210196 CCGGCTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
27210236 CCGGATTTAATAACTCGCAC-AATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
27210274 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
27210314 CCGGATTTAGTCACTTAGCACAAA-GCCTTCGGGAATTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
27210354 CCGGA
1 CCGGA
27210359 CATCATTCGA
Statistics
Matches: 138, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
38 24 0.17
39 22 0.16
40 81 0.59
41 11 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:27210290 original size:78 final size:81
Alignment explanation
Indices: 27210177--27210358 Score: 239
Period size: 78 Copynumber: 2.3 Consensus size: 81
27210167 TACTCGTTCA
* *
27210177 AATGCCTTCGGGACATAGCCCGG-CTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
27210240 ATTTAATAAC-TCGCAC
65 ATTTAATAACTTAGCAC
**
27210256 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
27210319 TTTAGTCACTTAGCAC
66 TTTAATAACTTAGCAC
* *
27210335 AAAGCCTTCGGGAATTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
27210359 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
77 3 0.03
78 48 0.53
79 29 0.32
80 10 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAATAACTTAGCAC
Found at i:27214206 original size:17 final size:18
Alignment explanation
Indices: 27214184--27214219 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
27214174 ATACATGCAG
27214184 TAATATTTT-TCTAATAA
1 TAATATTTTATCTAATAA
*
27214201 TAATATTTTATCTCATAA
1 TAATATTTTATCTAATAA
27214219 T
1 T
27214220 CTAATTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATATTTTATCTAATAA
Found at i:27214719 original size:24 final size:23
Alignment explanation
Indices: 27214686--27214734 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
27214676 TAAGTTCGTG
* *
27214686 TAATTAAATTGTGTATATATGATT
1 TAATTAAATTATATATATAT-ATT
*
27214710 TAATTGAATTATATATATATATT
1 TAATTAAATTATATATATATATT
27214733 TA
1 TA
27214735 TGAATTTCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (23 bp):
TAATTAAATTATATATATATATT
Found at i:27223481 original size:45 final size:46
Alignment explanation
Indices: 27223412--27223674 Score: 185
Period size: 49 Copynumber: 5.6 Consensus size: 46
27223402 TGATATGTGT
*
27223412 GCTAATGTAAGACATGTCTGGGACATGCATCGGCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCACGATTATGAGA
* * *
27223457 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-ACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CACGA-TTATGA-GA
* * * * * * * *
27223505 GCTAGTGTAAGACCTATCTGGGACATG-GT-GTCA-GCTTGTTGTGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCACGATT-ATGAGA
* * ** *
27223549 GTTAGTGTAAGACCTGTCTGGGACATGGCATCTACACCGATAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCA-CGAT-TATGAGA
* * * * *
27223598 TCTAGTGTAAGACCTGTCTGGGACATGAAATCGGCCTCGATATATGAAA
1 GCTAGTGTAAGACATGTCTGGGACATG-CATCGG-CACGAT-TATGAGA
*
27223647 GTTAGTGTAAGACGATGTCTGGGACATG
1 GCTAGTGTAAGAC-ATGTCTGGGACATG
27223675 GCTTTGGCAT
Statistics
Matches: 167, Mismatches: 36, Indels: 25
0.73 0.16 0.11
Matches are distributed among these distances:
43 1 0.01
44 26 0.16
45 34 0.20
46 4 0.02
47 5 0.03
48 30 0.18
49 53 0.32
50 14 0.08
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCACGATTATGAGA
Found at i:27226444 original size:40 final size:40
Alignment explanation
Indices: 27226336--27226505 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
27226326 CGGGATTTAA
* * * * *
27226336 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
27226376 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27226416 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27226456 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27226496 CCGGATATAT
1 CCGGATATAT
27226506 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:27234538 original size:40 final size:40
Alignment explanation
Indices: 27234430--27234599 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
27234420 CGGGATTTAA
* * * * *
27234430 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
27234470 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27234510 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27234550 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
27234590 CCGGATATAT
1 CCGGATATAT
27234600 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:27238371 original size:40 final size:39
Alignment explanation
Indices: 27238190--27238341 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
27238180 AATGTTCGAG
27238190 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
27238229 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
27238268 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
27238307 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
27238342 GGTTACCATA
Statistics
Matches: 106, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:27242097 original size:16 final size:16
Alignment explanation
Indices: 27242076--27242107 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
27242066 TTGTTTATGG
27242076 TAATGCGGTGATGTTA
1 TAATGCGGTGATGTTA
27242092 TAATGCGGTGATGTTA
1 TAATGCGGTGATGTTA
27242108 GTATTTGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.31, T:0.38
Consensus pattern (16 bp):
TAATGCGGTGATGTTA
Found at i:27243680 original size:30 final size:30
Alignment explanation
Indices: 27243644--27243703 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
27243634 TTTCTTCCTC
27243644 CACCAAAAATACCAGAAAAATAGGGGTTTT
1 CACCAAAAATACCAGAAAAATAGGGGTTTT
*
27243674 CACCAAAAATACCATAAAAATAGGGGTTTT
1 CACCAAAAATACCAGAAAAATAGGGGTTTT
27243704 TAGAGTTCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.47, C:0.17, G:0.15, T:0.22
Consensus pattern (30 bp):
CACCAAAAATACCAGAAAAATAGGGGTTTT
Found at i:27244785 original size:44 final size:44
Alignment explanation
Indices: 27244726--27244838 Score: 208
Period size: 44 Copynumber: 2.6 Consensus size: 44
27244716 TATACAAGCT
*
27244726 AGTGTAAGACTTGTCTGGGACATGGCGTCAGCTAGTTGCGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCGTCAGCTAGTTGCGTGTC
*
27244770 AGTGTAAGACCTGTCTGGGACATGGCGTCAGCTTGTTGCGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCGTCAGCTAGTTGCGTGTC
27244814 AGTGTAAGACCTGTCTGGGACATGG
1 AGTGTAAGACCTGTCTGGGACATGG
27244839 AATTGACACC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 67 1.00
ACGTcount: A:0.19, C:0.19, G:0.35, T:0.28
Consensus pattern (44 bp):
AGTGTAAGACCTGTCTGGGACATGGCGTCAGCTAGTTGCGTGTC
Found at i:27249893 original size:40 final size:40
Alignment explanation
Indices: 27249817--27249960 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
27249807 CAAACTCAAG
* * *
27249817 TGCCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAGA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAA
* *
27249856 TGCCTTTGGGTCTTAGCCCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
* * *
27249896 AGCCTTCGGGACTTAGCCTGGATATAATCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
* * *
27249936 TGCCCTCGGTACTTAACCCGGATAT
1 TGCCTTCGGGACTTAGCCCGGATAT
27249961 CATTCGAATA
Statistics
Matches: 88, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
39 13 0.15
40 72 0.82
41 3 0.03
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
Found at i:27258296 original size:93 final size:93
Alignment explanation
Indices: 27258184--27258355 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
27258174 GCCCATAAGT
* *
27258184 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
27258249 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
27258277 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
27258342 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
27258356 AAATATCCGT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:27258351 original size:46 final size:46
Alignment explanation
Indices: 27258176--27258351 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
27258166 TGTAACCTGC
* * *
27258176 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
27258222 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
27258272 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
27258315 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
27258352 TGCCAAATAT
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 65 0.59
47 28 0.25
49 1 0.01
50 6 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:27260744 original size:14 final size:14
Alignment explanation
Indices: 27260725--27260808 Score: 69
Period size: 15 Copynumber: 5.8 Consensus size: 14
27260715 CAAAGATAAC
* *
27260725 AAGAAAACCGAATA
1 AAGAAATCCAAATA
27260739 AAGAAATCCAAGATA
1 AAGAAATCCAA-ATA
* * *
27260754 GAGAAACCCGGAATA
1 AAGAAATCC-AAATA
27260769 AAGAAATCCAAATA
1 AAGAAATCCAAATA
* *
27260783 AAGAGATCCAGGATA
1 AAGAAATCCA-AATA
*
27260798 AAGAAACCCAA
1 AAGAAATCCAA
27260809 GATACGATAC
Statistics
Matches: 54, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
14 22 0.41
15 31 0.57
16 1 0.02
ACGTcount: A:0.57, C:0.17, G:0.17, T:0.10
Consensus pattern (14 bp):
AAGAAATCCAAATA
Found at i:27260812 original size:15 final size:15
Alignment explanation
Indices: 27260736--27260812 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
27260726 AGAAAACCGA
27260736 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
27260751 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
27260765 AATAAAGAAATCCAA-
1 -ATAAAGAAATCCAAG
* *
27260780 ATAAAGAGATCCAGG
1 ATAAAGAAATCCAAG
*
27260795 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
27260810 ATA
1 ATA
27260813 CGATACTATG
Statistics
Matches: 48, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
14 15 0.31
15 31 0.65
16 2 0.04
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:27263775 original size:45 final size:45
Alignment explanation
Indices: 27263706--27263878 Score: 197
Period size: 45 Copynumber: 3.8 Consensus size: 45
27263696 TGTAACCCGC
*
27263706 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
* *
27263751 CCATGAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * * *
27263797 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
*
27263843 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
27263879 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 62 0.58
46 10 0.09
47 26 0.25
48 3 0.03
49 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:27263871 original size:92 final size:92
Alignment explanation
Indices: 27263714--27263883 Score: 286
Period size: 92 Copynumber: 1.8 Consensus size: 92
27263704 GCCCATAAGT
* * *
27263714 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
27263779 GAGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
* *
27263806 GAACTCGGACTCAACTCAACGAGTTCGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
27263871 GAGTTCGGATGCC
66 GAGCTCGGATGCC
27263884 CAAATATCCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 72 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:27266324 original size:30 final size:30
Alignment explanation
Indices: 27266232--27266333 Score: 96
Period size: 30 Copynumber: 3.4 Consensus size: 30
27266222 GTTGCTCTGG
* * * * *
27266232 GTGAAATGAACTTGAACCACCTATGTTTGG
1 GTGATATGAACTCGAACCGCCCATGTTTGA
* ** **
27266262 GTGATATGAACACGAACCGCCCACATCCGA
1 GTGATATGAACTCGAACCGCCCATGTTTGA
* *
27266292 GTGATATAAACTCGAACCGTCCATGTTTGA
1 GTGATATGAACTCGAACCGCCCATGTTTGA
27266322 GTGATATGAACT
1 GTGATATGAACT
27266334 GCTCTACGAC
Statistics
Matches: 54, Mismatches: 18, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (30 bp):
GTGATATGAACTCGAACCGCCCATGTTTGA
Found at i:27268962 original size:21 final size:20
Alignment explanation
Indices: 27268936--27268987 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 20
27268926 TGTGACCAGC
27268936 TATAATATATATTTTTAATTT
1 TATAATATATATTTTT-ATTT
*
27268957 TATAATATAAATTTTTATTT
1 TATAATATATATTTTTATTT
*
27268977 TTTAATATATA
1 TATAATATATA
27268988 GTTTAAAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 13 0.46
21 15 0.54
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TATAATATATATTTTTATTT
Found at i:27269032 original size:19 final size:19
Alignment explanation
Indices: 27269007--27269052 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
27268997 AAAGCCATAA
27269007 ATTTTTTAACAAATAAATC
1 ATTTTTTAACAAATAAATC
*
27269026 TTTTTTTAACAAATAAATC
1 ATTTTTTAACAAATAAATC
27269045 ATTTTTTA
1 ATTTTTTA
27269053 TTTTTTTCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (19 bp):
ATTTTTTAACAAATAAATC
Found at i:27269196 original size:22 final size:21
Alignment explanation
Indices: 27269166--27269228 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 21
27269156 AAATCATAAT
*
27269166 TTAAAAAATTTATATTTAAAA
1 TTAAAAAATTTAAATTTAAAA
27269187 TTAAATAAATTTAAATTTAAAA
1 TTAAA-AAATTTAAATTTAAAA
* * *
27269209 TTTTAAAAATATACATTTAA
1 -TTAAAAAATTTAAATTTAA
27269229 CATATTATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
21 5 0.14
22 27 0.75
23 4 0.11
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
TTAAAAAATTTAAATTTAAAA
Found at i:27269326 original size:22 final size:22
Alignment explanation
Indices: 27269303--27269386 Score: 116
Period size: 21 Copynumber: 3.7 Consensus size: 22
27269293 TTATACTATT
27269303 AAAAATATATATTTAAATTTTTAA
1 AAAAATA-ATATTTAAATTTTT-A
27269327 AAAAATAATATTTAAATTTTTA
1 AAAAATAATATTTAAATTTTTA
* *
27269349 AAAAAT-ATTTTTAAAATTTTA
1 AAAAATAATATTTAAATTTTTA
27269370 AAAAATAATATTATAAA
1 AAAAATAATATT-TAAA
27269387 ACATTTTAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
21 19 0.35
22 11 0.20
23 18 0.33
24 7 0.13
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAAATAATATTTAAATTTTTA
Found at i:27269329 original size:23 final size:23
Alignment explanation
Indices: 27269303--27269386 Score: 113
Period size: 23 Copynumber: 3.7 Consensus size: 23
27269293 TTATACTATT
27269303 AAAAATATATATTTAAATTTTTA
1 AAAAATATATATTTAAATTTTTA
27269326 AAAAA-ATAATATTTAAATTTTTA
1 AAAAATAT-ATATTTAAATTTTTA
*
27269349 AAAAATAT-T-TTTAAAATTTTA
1 AAAAATATATATTTAAATTTTTA
27269370 AAAAATA-ATATTATAAA
1 AAAAATATATATT-TAAA
27269387 ACATTTTAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 10
0.83 0.02 0.15
Matches are distributed among these distances:
21 19 0.35
22 5 0.09
23 29 0.53
24 2 0.04
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
AAAAATATATATTTAAATTTTTA
Found at i:27269387 original size:23 final size:22
Alignment explanation
Indices: 27269303--27269396 Score: 109
Period size: 21 Copynumber: 4.1 Consensus size: 22
27269293 TTATACTATT
*
27269303 AAAAATATATATTTAAATTTTTAA
1 AAAAATA-ATATTTAAAATTTT-A
*
27269327 AAAAATAATATTTAAATTTTTA
1 AAAAATAATATTTAAAATTTTA
*
27269349 AAAAAT-ATTTTTAAAATTTTA
1 AAAAATAATATTTAAAATTTTA
27269370 AAAAATAATATTATAAAACATTTTA
1 AAAAATAATATT-T-AAA-ATTTTA
27269395 AA
1 AA
27269397 TATACATTTC
Statistics
Matches: 63, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
21 19 0.30
22 11 0.17
23 15 0.24
24 10 0.16
25 8 0.13
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAAATAATATTTAAAATTTTA
Found at i:27269411 original size:45 final size:42
Alignment explanation
Indices: 27269304--27269419 Score: 117
Period size: 45 Copynumber: 2.6 Consensus size: 42
27269294 TATACTATTA
*
27269304 AAAATATATATTTAAATTTTTAAAAAAATAATATTTAAATTTTT
1 AAAATATATATTTAAA-TTTT-AAAAAATAATATTTAAAATTTT
* *
27269348 AAAAAATATTTTTAAAATTTTAAAAAATAATATTATAAAACATTTT
1 AAAATATATATTT-AAATTTTAAAAAATAATATT-T-AAA-ATTTT
* *
27269394 -AAATATACATTTCAAATTTTATAAAA
1 AAAATATATATTT-AAATTTTAAAAAA
27269420 CCAATAATAA
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
43 13 0.22
44 16 0.27
45 27 0.45
46 4 0.07
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (42 bp):
AAAATATATATTTAAATTTTAAAAAATAATATTTAAAATTTT
Found at i:27274336 original size:30 final size:30
Alignment explanation
Indices: 27274291--27274350 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
27274281 ATTCAATATG
*
27274291 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
27274321 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
27274351 GGTTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:27278953 original size:11 final size:11
Alignment explanation
Indices: 27278930--27278963 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
27278920 ATGTCAAATC
*
27278930 ATCAAGAATAA
1 ATCAAGAACAA
*
27278941 ATTAAGAACAA
1 ATCAAGAACAA
27278952 ATCAAGAACAA
1 ATCAAGAACAA
27278963 A
1 A
27278964 ACTAGATGCG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.65, C:0.12, G:0.09, T:0.15
Consensus pattern (11 bp):
ATCAAGAACAA
Found at i:27279453 original size:20 final size:21
Alignment explanation
Indices: 27279414--27279453 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
27279404 GAATACTATT
*
27279414 AAATTTGTAAAAATATAAAAA
1 AAATTTGTAAAAACATAAAAA
*
27279435 AAATTT-TAATAACATAAAA
1 AAATTTGTAAAAACATAAAA
27279454 TATATTAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (21 bp):
AAATTTGTAAAAACATAAAAA
Found at i:27282127 original size:11 final size:12
Alignment explanation
Indices: 27282093--27282141 Score: 66
Period size: 11 Copynumber: 4.2 Consensus size: 12
27282083 ATTTGTTGAG
27282093 TTTTTTACATAA
1 TTTTTTACATAA
**
27282105 TTTTCAACATAA
1 TTTTTTACATAA
27282117 TTTTTTA-ATAA
1 TTTTTTACATAA
27282128 TTTTTTA-ATAA
1 TTTTTTACATAA
27282139 TTT
1 TTT
27282142 ATATTTATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
11 18 0.55
12 15 0.45
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (12 bp):
TTTTTTACATAA
Found at i:27296134 original size:11 final size:11
Alignment explanation
Indices: 27296101--27296137 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
27296091 TCATAGGGTA
27296101 CTCACAGAACC
1 CTCACAGAACC
*
27296112 ATCACAGAACC
1 CTCACAGAACC
27296123 CTCACAGAACC
1 CTCACAGAACC
27296134 CTCA
1 CTCA
27296138 TATGATCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.38, C:0.43, G:0.08, T:0.11
Consensus pattern (11 bp):
CTCACAGAACC
Found at i:27305219 original size:16 final size:17
Alignment explanation
Indices: 27305186--27305219 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
27305176 TCGGGCTATA
*
27305186 ACCATGCATTTCCAAAC
1 ACCATGCATATCCAAAC
27305203 ACCATGCATAT-CAAAC
1 ACCATGCATATCCAAAC
27305219 A
1 A
27305220 TAGTATACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.41, C:0.32, G:0.06, T:0.21
Consensus pattern (17 bp):
ACCATGCATATCCAAAC
Found at i:27305955 original size:138 final size:139
Alignment explanation
Indices: 27305706--27305990 Score: 491
Period size: 138 Copynumber: 2.1 Consensus size: 139
27305696 TTAGAAAATG
*
27305706 AATTATATTTTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTTGACCGAAATTAATTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTTGACCGAAATTAATTA
* *
27305771 ATATAATTATTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
66 ATATAATTATTTATATTAATAAATTCGGTAAAATAAATACAATTAATATTTTGTATGAATCAAAT
27305836 TCATATATT
131 TCATATATT
*
27305845 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATA-TTTTGACTGAAATTAATTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTTGACCGAAATTAATTA
* * **
27305909 ATATGATTGTTTATATTGCTAAATTCGGTAAAATAAATACAATTAATATTTTGTATGAATCAAAT
66 ATATAATTATTTATATTAATAAATTCGGTAAAATAAATACAATTAATATTTTGTATGAATCAAAT
27305974 TCATATATT
131 TCATATATT
27305983 AATTATAT
1 AATTATAT
27305991 ATATGCTCTT
Statistics
Matches: 138, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
138 94 0.68
139 44 0.32
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.46
Consensus pattern (139 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTTGACCGAAATTAATTA
ATATAATTATTTATATTAATAAATTCGGTAAAATAAATACAATTAATATTTTGTATGAATCAAAT
TCATATATT
Found at i:27307500 original size:13 final size:12
Alignment explanation
Indices: 27307475--27307508 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
27307465 GTGTTATAAA
27307475 AACTAAGAATTT
1 AACTAAGAATTT
*
27307487 AGCTAAGTAATTT
1 AACTAAG-AATTT
27307500 AACTAAGAA
1 AACTAAGAA
27307509 AAATGAAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (12 bp):
AACTAAGAATTT
Found at i:27307590 original size:29 final size:29
Alignment explanation
Indices: 27307557--27307614 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
27307547 AAAGTAAGTT
*
27307557 TAATCTATATGACATAAATGTGTTAGATC
1 TAATCTATATGACATAAATGTGTCAGATC
27307586 TAATCTATATGACATAAATGTGTCAGATC
1 TAATCTATATGACATAAATGTGTCAGATC
27307615 AATTTTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (29 bp):
TAATCTATATGACATAAATGTGTCAGATC
Found at i:27311737 original size:14 final size:14
Alignment explanation
Indices: 27311718--27311745 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
27311708 GACATTTTCC
27311718 TTGGCTTTTAAACT
1 TTGGCTTTTAAACT
27311732 TTGGCTTTTAAACT
1 TTGGCTTTTAAACT
27311746 GTTGATGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50
Consensus pattern (14 bp):
TTGGCTTTTAAACT
Found at i:27319320 original size:11 final size:11
Alignment explanation
Indices: 27319304--27319342 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
27319294 GACCATAGAA
27319304 GAAAGGGAAAT
1 GAAAGGGAAAT
27319315 GAAA-GGAAACT
1 GAAAGGGAAA-T
*
27319326 AAAAGGGAAAT
1 GAAAGGGAAAT
27319337 GAAAGG
1 GAAAGG
27319343 AAACTAGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
10 5 0.21
11 14 0.58
12 5 0.21
ACGTcount: A:0.56, C:0.03, G:0.33, T:0.08
Consensus pattern (11 bp):
GAAAGGGAAAT
Found at i:27319330 original size:22 final size:22
Alignment explanation
Indices: 27319305--27319357 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
27319295 ACCATAGAAG
27319305 AAAGGGAAATGAAAGGAAACTA
1 AAAGGGAAATGAAAGGAAACTA
27319327 AAAGGGAAATGAAAGGAAACTA
1 AAAGGGAAATGAAAGGAAACTA
*
27319349 GAAGGGAAA
1 AAAGGGAAA
27319358 AAGAGAGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.58, C:0.04, G:0.30, T:0.08
Consensus pattern (22 bp):
AAAGGGAAATGAAAGGAAACTA
Found at i:27321675 original size:17 final size:18
Alignment explanation
Indices: 27321655--27321696 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
27321645 GATATGAAAG
*
27321655 AAAAAAAAAT-AATAACT
1 AAAAAAAAATAAACAACT
*
27321672 AAAATAAAATAAACAACT
1 AAAAAAAAATAAACAACT
27321690 AAAAAAA
1 AAAAAAA
27321697 TGGAACAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (18 bp):
AAAAAAAAATAAACAACT
Found at i:27323367 original size:39 final size:39
Alignment explanation
Indices: 27323323--27323479 Score: 226
Period size: 39 Copynumber: 4.0 Consensus size: 39
27323313 GATGTGTATG
*
27323323 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCA
27323362 AATGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGC-
1 AATGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCA
**
27323400 AATGGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCA
1 AAT-GTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCA
* * * *
27323440 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 AATGTGCGAATTATGATATCCGGGCTAAG-CCCGAAGGCA
27323480 TTTGTGTGGG
Statistics
Matches: 108, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
38 3 0.03
39 93 0.86
40 12 0.11
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (39 bp):
AATGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCA
Found at i:27331451 original size:39 final size:39
Alignment explanation
Indices: 27331397--27331559 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
27331387 TGTGAATGAA
27331397 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
27331436 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
27331475 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * **
27331514 TGTGCGAGTTGTGATATCCAGGTTAAGTCCCGAAGGCGTT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
27331554 TGTGCG
1 TGTGCG
27331560 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 98 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:27343192 original size:5 final size:5
Alignment explanation
Indices: 27343182--27343272 Score: 166
Period size: 5 Copynumber: 18.4 Consensus size: 5
27343172 TTATGTTTTA
*
27343182 ATTAT ATTAT ATTAT ATTAC ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
27343232 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
27343273 ACTAAAGAAG
Statistics
Matches: 83, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
4 4 0.05
5 79 0.95
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:27344557 original size:15 final size:15
Alignment explanation
Indices: 27344537--27344593 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
27344527 CGATGAATTT
27344537 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
27344552 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
27344567 ATTGAATTTATATTG
1 ATTGAATTTATATTG
27344582 ATTGAA-TTATAT
1 ATTGAATTTATAT
27344594 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:27344994 original size:23 final size:23
Alignment explanation
Indices: 27344964--27345050 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
27344954 GCTTTATCGA
* *
27344964 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
27344987 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
27345008 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
27345030 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
27345051 ACTGATCAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 35 0.64
22 2 0.04
23 18 0.33
ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:27349942 original size:40 final size:40
Alignment explanation
Indices: 27349883--27350090 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
27349873 CAATTGAATG
* * * *
27349883 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
27349923 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
27349963 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
27350003 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
27350043 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
27350083 ATATCCGG
1 ATATCCGG
27350091 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:27350021 original size:80 final size:80
Alignment explanation
Indices: 27349885--27350090 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
27349875 ATTGAATGAT
* * ** * * *
27349885 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
27349949 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
27349965 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
27350030 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
27350045 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
27350091 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Done.