Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 135709677
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135709677
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 97 of 438
Found at i:27353396 original size:140 final size:139
Alignment explanation
Indices: 27353067--27353485 Score: 584
Period size: 134 Copynumber: 3.1 Consensus size: 139
27353057 GAAAAAATAT
* * *
27353067 TTATATTATTTCCAAAAGAATATTAATTTCCATATCTTTTATATTTTGACCGAAATTAATTAATA
1 TTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAATA
** *
27353132 TATTTGTTTATATTAATAAATTCAGTAAAATATA-TACAATTAATATTTTGTATGAATCAAATTC
66 TAAATGTTTATATTAATAAATTCAGTAAAAAATATTACAATTAATATTTTGTATGAATCAAATTC
27353196 ATATA-T-A
131 ATATATTAA
*
27353203 -T-TATTCTTTCTAAAAGAATATTAA-TTTCTATGTCTTTTATATTTTGACCGAAATTAATTAAT
1 TTATATTCTTTCCAAAAGAATATTAATTTTC-ATGTCTTTTATATTTTGACCGAAATTAATTAAT
*
27353265 ATAAATGTTTATATTAAT-AATTCAGTAAAAAAATATTTACAATTAATATTTTGTATGAATTAAA
65 ATAAATGTTTATATTAATAAATTCAGT-AAAAAATA-TTACAATTAATATTTTGTATGAATCAAA
* *
27353329 TTGATACATTAA
128 TTCATATATTAA
* * *
27353341 TTATATTCTTTCCAAAAGAATAATAATTTTCATGTCCTTTATATTTTGACCGAAATTAATTAATT
1 TTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAATA
* * * * *
27353406 TAACTGTTTATATTGATAAATTTAGTAAAAGATA-TACAATTAATATTTTTTATGAATCAAATTC
66 TAAATGTTTATATTAATAAATTCAGTAAAAAATATTACAATTAATATTTTGTATGAATCAAATTC
27353470 ATATATTAA
131 ATATATTAA
*
27353479 TCATATT
1 TTATATT
27353486 TATGTTCTCT
Statistics
Matches: 250, Mismatches: 23, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
133 11 0.04
134 76 0.30
135 1 0.00
136 32 0.13
137 1 0.00
138 42 0.17
139 1 0.00
140 75 0.30
141 11 0.04
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.46
Consensus pattern (139 bp):
TTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAATA
TAAATGTTTATATTAATAAATTCAGTAAAAAATATTACAATTAATATTTTGTATGAATCAAATTC
ATATATTAA
Found at i:27355412 original size:7 final size:7
Alignment explanation
Indices: 27355400--27355426 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
27355390 TATGCATGAG
27355400 TGTGAAC
1 TGTGAAC
27355407 TGTGAAC
1 TGTGAAC
27355414 TGTGAAC
1 TGTGAAC
27355421 TGTGAA
1 TGTGAA
27355427 TACAGCTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.30
Consensus pattern (7 bp):
TGTGAAC
Found at i:27355861 original size:13 final size:13
Alignment explanation
Indices: 27355843--27355869 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
27355833 GTCTAGTCAA
27355843 TGTGAATTTTACC
1 TGTGAATTTTACC
27355856 TGTGAATTTTACC
1 TGTGAATTTTACC
27355869 T
1 T
27355870 TCATTTGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.15, G:0.15, T:0.48
Consensus pattern (13 bp):
TGTGAATTTTACC
Found at i:27356295 original size:43 final size:43
Alignment explanation
Indices: 27356235--27356325 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
27356225 TTTTGAGTTC
* * *
27356235 ATTA-CAAGATTTCCTTGATTAAGTAAATGTATTATATCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
* *
27356277 ATTACCAAGATTTACTTGATTAAGAAAATGCATTGTATGTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
27356320 ATTACC
1 ATTACC
27356326 TTGCAATGTG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 4 0.09
43 39 0.91
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.44
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
Found at i:27357173 original size:43 final size:41
Alignment explanation
Indices: 27357126--27357283 Score: 123
Period size: 43 Copynumber: 3.9 Consensus size: 41
27357116 TGTTTTTGAA
27357126 AAAAGCGTCACTAAAGGTCATGTTTTATAGTGGCGTTTGTAGG
1 AAAAGCGT-ACTAAAGGTCATGTTTTATAGTGGCGTTTGT-GG
* * * *
27357169 AAAAGCGTAGCTAAATGTCATGTTTTATAGCGGTGTTTGGGG
1 AAAAGCGTA-CTAAAGGTCATGTTTTATAGTGGCGTTTGTGG
* *
27357211 GAAA--G--C--AATGTCATGTTTTATAGCT-GCGTTTGTGG
1 AAAAGCGTACTAAAGGTCATGTTTTATAG-TGGCGTTTGTGG
* *** *
27357246 GAAAGCACCGCTAAAGGTCATGTTTTATAATGGCGTTT
1 AAAAGC-GTACTAAAGGTCATGTTTTATAGTGGCGTTT
27357284 TTTCACAAAC
Statistics
Matches: 94, Mismatches: 11, Indels: 21
0.75 0.09 0.17
Matches are distributed among these distances:
35 29 0.31
37 1 0.01
40 2 0.02
41 1 0.01
42 27 0.29
43 34 0.36
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.34
Consensus pattern (41 bp):
AAAAGCGTACTAAAGGTCATGTTTTATAGTGGCGTTTGTGG
Found at i:27357228 original size:35 final size:35
Alignment explanation
Indices: 27357182--27357252 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
27357172 AGCGTAGCTA
*
27357182 AATGTCATGTTTTATAGCGGTGTTTGGGGGAAAGC
1 AATGTCATGTTTTATAGCGGCGTTTGGGGGAAAGC
* *
27357217 AATGTCATGTTTTATAGCTGCGTTTGTGGGAAAGC
1 AATGTCATGTTTTATAGCGGCGTTTGGGGGAAAGC
27357252 A
1 A
27357253 CCGCTAAAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.24, C:0.10, G:0.31, T:0.35
Consensus pattern (35 bp):
AATGTCATGTTTTATAGCGGCGTTTGGGGGAAAGC
Found at i:27363460 original size:43 final size:43
Alignment explanation
Indices: 27363305--27363461 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
27363295 TGTGTTTTCG
* * * *
27363305 TGTAACACCACGTCTGGGACGTTGGCATCGACT-TATGATTTACG
1 TGTAAGACCACGTCTGAGACGTTGGCATCGA-TATTTGA-TTACA
** * * *
27363349 TGTAAGACCATATC-CAGGACGTTGACATCG-TATTTGATTTCA
1 TGTAAGACCACGTCTGA-GACGTTGGCATCGATATTTGATTACA
* *
27363391 TGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGAGA-CGTTGGCATCGATATTTGATTACA
27363434 TGTAAGACCACGTCTGAGACGTTGGCAT
1 TGTAAGACCACGTCTGAGACGTTGGCAT
27363462 TGTACGAGAT
Statistics
Matches: 87, Mismatches: 18, Indels: 17
0.71 0.15 0.14
Matches are distributed among these distances:
42 25 0.29
43 38 0.44
44 24 0.28
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGAGACGTTGGCATCGATATTTGATTACA
Found at i:27363541 original size:2 final size:2
Alignment explanation
Indices: 27363534--27363568 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
27363524 GAGAAAATAG
27363534 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
27363569 AGTTGTGTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:27371165 original size:43 final size:42
Alignment explanation
Indices: 27371049--27371165 Score: 128
Period size: 43 Copynumber: 2.8 Consensus size: 42
27371039 AACTTATGAT
* * * *
27371049 TTACGTGTAAGACTACGTCTAGGATGTTGGCATCATATTTGA
1 TTACGTGTAAGACCATGTCTGGGATGTTGGCACCATATTTGA
* * * *
27371091 TTTCGTGTAAGACCCTATCTGGGACAG-TGGCACCGATATTTGA
1 TTACGTGTAAGACCATGTCTGGGA-TGTTGGCACC-ATATTTGA
*
27371134 TTACATGTAAGACCATGTCTGGGATGTTGGCA
1 TTACGTGTAAGACCATGTCTGGGATGTTGGCA
27371166 TTGTATGAGA
Statistics
Matches: 59, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
42 25 0.42
43 34 0.58
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGGATGTTGGCACCATATTTGA
Found at i:27371242 original size:2 final size:2
Alignment explanation
Indices: 27371235--27371265 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
27371225 TTCCGAGAAA
27371235 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
27371266 AATTATGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:27375989 original size:27 final size:28
Alignment explanation
Indices: 27375954--27376021 Score: 111
Period size: 27 Copynumber: 2.5 Consensus size: 28
27375944 AATTTGATTG
* *
27375954 AAAAATGAATTAAAAATATG-ATTAAAT
1 AAAAGTGAATTAAAAATATGAACTAAAT
27375981 AAAAGTGAATTAAAAATATGAACTAAAT
1 AAAAGTGAATTAAAAATATGAACTAAAT
27376009 AAAAGTGAATTAA
1 AAAAGTGAATTAA
27376022 TTTATAAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 19 0.50
28 19 0.50
ACGTcount: A:0.62, C:0.01, G:0.10, T:0.26
Consensus pattern (28 bp):
AAAAGTGAATTAAAAATATGAACTAAAT
Found at i:27376007 original size:13 final size:13
Alignment explanation
Indices: 27375954--27376021 Score: 59
Period size: 13 Copynumber: 5.1 Consensus size: 13
27375944 AATTTGATTG
27375954 AAAA-ATGAATTA
1 AAAATATGAATTA
27375966 AAAATATG-ATTA
1 AAAATATGAATTA
*
27375978 AATAAAAGTGAATTA
1 AA-AATA-TGAATTA
*
27375993 AAAATATGAACTA
1 AAAATATGAATTA
*
27376006 AATAAAAGTGAATTA
1 AA-AATA-TGAATTA
27376021 A
1 A
27376022 TTTATAAATA
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
12 10 0.22
13 14 0.31
14 8 0.18
15 13 0.29
ACGTcount: A:0.62, C:0.01, G:0.10, T:0.26
Consensus pattern (13 bp):
AAAATATGAATTA
Found at i:27377574 original size:33 final size:33
Alignment explanation
Indices: 27377535--27377626 Score: 98
Period size: 33 Copynumber: 2.8 Consensus size: 33
27377525 GAGGTGTACA
*
27377535 TTCCTTTCCAAGTGGTACAAATAAAGTATACCT
1 TTCCTTTCCAAGTGGTACAAACAAAGTATACCT
* * *
27377568 TTCCTTTTCATA-TGGTATACACAAAGTATACCT
1 TTCCTTTCCA-AGTGGTACAAACAAAGTATACCT
** *
27377601 AACCTTTCCAAGT-GTACACACAAAGT
1 TTCCTTTCCAAGTGGTACAAACAAAGT
27377627 GTACATAACC
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
32 13 0.27
33 35 0.71
34 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.33
Consensus pattern (33 bp):
TTCCTTTCCAAGTGGTACAAACAAAGTATACCT
Found at i:27377636 original size:32 final size:33
Alignment explanation
Indices: 27377537--27377650 Score: 97
Period size: 33 Copynumber: 3.5 Consensus size: 33
27377527 GGTGTACATT
* * * * **
27377537 CCTTTCCAAGTGGTACAAATAAAGTATACCTTT
1 CCTTTCCAAGTTGTACACACAAAGTATACATAA
* * * *
27377570 CCTTTTCATA-TGGTATACACAAAGTATACCTAA
1 CCTTTCCA-AGTTGTACACACAAAGTATACATAA
*
27377603 CCTTTCCAAG-TGTACACACAAAGTGTACATAA
1 CCTTTCCAAGTTGTACACACAAAGTATACATAA
*
27377635 CCTTTTCAAGTTGTAC
1 CCTTTCCAAGTTGTAC
27377651 CATTTGGGTA
Statistics
Matches: 66, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
32 28 0.42
33 37 0.56
34 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.32
Consensus pattern (33 bp):
CCTTTCCAAGTTGTACACACAAAGTATACATAA
Found at i:27382482 original size:27 final size:28
Alignment explanation
Indices: 27382426--27382495 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
27382416 AAATTTGTAC
27382426 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
27382454 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
27382481 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
27382496 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:27387162 original size:13 final size:13
Alignment explanation
Indices: 27387144--27387193 Score: 55
Period size: 13 Copynumber: 3.5 Consensus size: 13
27387134 AGGGGCACAT
27387144 GCCCGTGTGGCCA
1 GCCCGTGTGGCCA
27387157 GCCCGTGTGGCTCCCA
1 GCCCGTGTGG---CCA
*
27387173 TGGCCGTGTGGCCA
1 -GCCCGTGTGGCCA
27387187 GCCCGTG
1 GCCCGTG
27387194 GGCAATTCTG
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
13 16 0.52
14 3 0.10
16 3 0.10
17 9 0.29
ACGTcount: A:0.06, C:0.38, G:0.38, T:0.18
Consensus pattern (13 bp):
GCCCGTGTGGCCA
Found at i:27391858 original size:40 final size:39
Alignment explanation
Indices: 27391675--27391858 Score: 149
Period size: 40 Copynumber: 4.6 Consensus size: 39
27391665 ACGACTCGCT
** * **
27391675 CAAATGCCTTCGGGACGAAGCCCGGTTATAGCGACTTGCA
1 CAAA-GCCTTCGGGACTTAGCCCGGATATAGTTACTTGCA
* * * * *
27391715 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCA
1 C-AAAGCCTTCGGGACTTAGCCCGGATATAGTTACTTGCA
* *
27391755 CAAAGCCTTCGGGA-TTAGCCCGGATTTA-TTAACTCGCA
1 CAAAGCCTTCGGGACTTAGCCCGGATATAGTT-ACTTGCA
* * * *
27391793 CGAATGCCTT-TGGATCCTAGTCCGGATATAGTTACTTAGCA
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTTACTT-GCA
27391834 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
27391859 CATCATTCGA
Statistics
Matches: 113, Mismatches: 23, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
37 1 0.01
38 22 0.19
39 19 0.17
40 60 0.53
41 11 0.10
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CAAAGCCTTCGGGACTTAGCCCGGATATAGTTACTTGCA
Found at i:27399912 original size:40 final size:39
Alignment explanation
Indices: 27399729--27399912 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 39
27399719 ACGACTCGCT
** * **
27399729 CAAATGCCTTCGGGACGAAGCCCGGTTATAGCGACTTGCA
1 CAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
* * * *
27399769 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCA
1 C-AAAGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
* * * *
27399809 CAAAGCCTTCGGGA-TTAGCCCGGATTTATTAACTCGTA
1 CAAAGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
* * * *
27399847 CGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCA
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTAACTT-GCA
*
27399888 CAAAGCCTTCGAGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
27399913 CATCATTCGA
Statistics
Matches: 112, Mismatches: 26, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
38 23 0.21
39 20 0.18
40 62 0.55
41 7 0.06
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (39 bp):
CAAAGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
Found at i:27402356 original size:20 final size:19
Alignment explanation
Indices: 27402333--27402379 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
27402323 TATTTCTTAA
27402333 AATTAAAACTCAATTCTACC
1 AATTAAAACTCAATTC-ACC
* *
27402353 AATTCAAAACTCCATTCAGC
1 AATT-AAAACTCAATTCACC
27402373 AATTAAA
1 AATTAAA
27402380 CATGAATTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.42
21 11 0.46
ACGTcount: A:0.47, C:0.23, G:0.02, T:0.28
Consensus pattern (19 bp):
AATTAAAACTCAATTCACC
Found at i:27424054 original size:40 final size:40
Alignment explanation
Indices: 27423999--27424180 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
27423989 TATTCAGATG
*
27423999 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
27424039 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
27424079 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
27424119 ATAACCGGGCTAAATCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* * *
27424159 ATATCC-GGCTAATTCTCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
27424181 TACTTGGTTT
Statistics
Matches: 133, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 16 0.12
40 117 0.88
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:27427725 original size:40 final size:40
Alignment explanation
Indices: 27427666--27427833 Score: 201
Period size: 40 Copynumber: 4.2 Consensus size: 40
27427656 CAATTGAATG
* * * * *
27427666 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * *
27427706 ATATCCGGGTTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * *
27427746 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * * *
27427786 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
27427826 ATATCCGG
1 ATATCCGG
27427834 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 108 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
Found at i:27427801 original size:80 final size:80
Alignment explanation
Indices: 27427668--27427833 Score: 226
Period size: 80 Copynumber: 2.1 Consensus size: 80
27427658 ATTGAATGAT
* *
27427668 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGACATTTATGCAAGTAATTATATCCGGGCTAAGACCCGAAGGCATT
*
27427733 CGTGCAAGTTGTTAA
66 CGTGCAAGTGGTTAA
* * ** *
27427748 ATCCGGGCTAA-TACCCGAAGGCATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGT-CCCGAAGACATTTATGCAAGTAATTATATCCGGGCTAAGACCCGAAGGCAT
* *
27427812 TCGTGCATGTGGTTAT
65 TCGTGCAAGTGGTTAA
27427828 ATCCGG
1 ATCCGG
27427834 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
79 1 0.01
80 74 0.99
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGACATTTATGCAAGTAATTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:27435830 original size:40 final size:39
Alignment explanation
Indices: 27435771--27435957 Score: 223
Period size: 40 Copynumber: 4.7 Consensus size: 39
27435761 CAATTGAATG
* * * * *
27435771 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTT
* *
27435811 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTCG-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTT
*
27435850 ACTATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 A-TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGTT
* *
27435891 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTT
*
27435931 CTATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
27435958 CATGTGGTTA
Statistics
Matches: 126, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 3 0.02
40 120 0.95
41 3 0.02
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGTT
Found at i:27435909 original size:80 final size:80
Alignment explanation
Indices: 27435772--27435961 Score: 272
Period size: 80 Copynumber: 2.4 Consensus size: 80
27435762 AATTGAATGA
* * * * * *
27435772 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAATTAAATCCGGGCTAAGACCCGAAGGCAA
27435837 TTGTGCAAGTCGTAC
66 TTGTGCAAGTCGTAC
* ** * *
27435852 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAATTAAATCCGGGCTAAGACCCGAAGGCAA
*
27435917 TTGTGCAAGTCGTTC
66 TTGTGCAAGTCGTAC
27435932 TATCCGGGCTAAGACCCGAAGGCATTCATG
1 TATCCGGGCTAAGACCCGAAGGCATTCATG
27435962 TGGTTATATC
Statistics
Matches: 97, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 97 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAATTAAATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:27439268 original size:127 final size:127
Alignment explanation
Indices: 27439028--27439276 Score: 360
Period size: 127 Copynumber: 2.0 Consensus size: 127
27439018 TGAAATATAT
* *
27439028 ACAATTAATATTTTATATGAAACAAATTCATATATTAATTATATTCTTTCAGAAAGAATATTAAT
1 ACAATCAATAGTTTATATGAAACAAATTCATATATTAATTATATTCTTTCAGAAAGAATATTAAT
**
27439093 TTTCATGTCCTTTATATTTTGATGAAATTAATTAATATAACTATTTATATTAATAAATTTAG
66 TTTCATGTCCTTTATATTTTGACAAAATTAATTAATATAACTATTTATATTAATAAATTTAG
* ** *
27439155 ACAATCAATAGTTTGTATGAATTAAATTCATATATTAATTATATTCTTTTCA-AAATAATATTAA
1 ACAATCAATAGTTTATATGAAACAAATTCATATATTAATTATATTC-TTTCAGAAAGAATATTAA
* *
27439219 -TTTCTATTTCTTTTATATTTTGACCAAAATTAATTAATATAACTA-TTATATTAATAAA
65 TTTTC-ATGTCCTTTATATTTTGA-CAAAATTAATTAATATAACTATTTATATTAATAAA
27439277 CTTGGTAAAA
Statistics
Matches: 109, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
126 4 0.04
127 81 0.74
128 24 0.22
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (127 bp):
ACAATCAATAGTTTATATGAAACAAATTCATATATTAATTATATTCTTTCAGAAAGAATATTAAT
TTTCATGTCCTTTATATTTTGACAAAATTAATTAATATAACTATTTATATTAATAAATTTAG
Found at i:27442014 original size:39 final size:39
Alignment explanation
Indices: 27441970--27442077 Score: 137
Period size: 40 Copynumber: 2.7 Consensus size: 39
27441960 CAATCCAACT
*
27441970 AGCTCATGGTGGAG-TTTGTTGATACACAACTTAACCTTA
1 AGCTCATGG-GGAGCTTTGTTGATACACAACTTAACCATA
* * *
27442009 AGCTCATGGAGGAGCTTCGCTGATACACAACTTATCCATA
1 AGCTCATGG-GGAGCTTTGTTGATACACAACTTAACCATA
* *
27442049 AGCTCATGGGGAGCTTTATTAATACACAA
1 AGCTCATGGGGAGCTTTGTTGATACACAA
27442078 TTTATAAAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
39 29 0.49
40 30 0.51
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (39 bp):
AGCTCATGGGGAGCTTTGTTGATACACAACTTAACCATA
Found at i:27443643 original size:10 final size:10
Alignment explanation
Indices: 27443628--27443656 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
27443618 CCACCACACC
27443628 ACCACCATTA
1 ACCACCATTA
27443638 ACCACCATTA
1 ACCACCATTA
27443648 ACCACCATT
1 ACCACCATT
27443657 GCAACATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.21
Consensus pattern (10 bp):
ACCACCATTA
Found at i:27444880 original size:20 final size:20
Alignment explanation
Indices: 27444819--27444881 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
27444809 GTTTATCTGA
*
27444819 ATTACTAGTGGCTTGTCCAC
1 ATTACTGGTGGCTTGTCCAC
* * * * *
27444839 ATTTCTGGTAGTTTATCTAC
1 ATTACTGGTGGCTTGTCCAC
27444859 ATTACTGGTGGCTTGTCCAC
1 ATTACTGGTGGCTTGTCCAC
27444879 ATT
1 ATT
27444882 TTTAAGTACT
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.41
Consensus pattern (20 bp):
ATTACTGGTGGCTTGTCCAC
Found at i:27455982 original size:6 final size:6
Alignment explanation
Indices: 27455966--27456003 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
27455956 TGATTTTCTC
*
27455966 AAAATG GAAATG AAAATG AAAATG AAAATG AGAAATG A
1 AAAATG AAAATG AAAATG AAAATG AAAATG A-AAATG A
27456004 TTCATTTGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.63, C:0.00, G:0.21, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:27458606 original size:39 final size:39
Alignment explanation
Indices: 27458490--27458674 Score: 217
Period size: 39 Copynumber: 4.7 Consensus size: 39
27458480 CTCGTTCAAA
* * *** * *
27458490 TGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAA
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
* * * *
27458530 GGCCTTCGGGACTTAACCCGGATATCACAATTTGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
*
27458570 TGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
* * *
27458609 TGCCTTCGGGCTTAGCCCGGGTATCACAATTTGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
27458648 TGCCTTCGGGCTTAGCCCGGATATCAC
1 TGCCTTCGGGCTTAGCCCGGATATCAC
27458675 TCGAACATTC
Statistics
Matches: 124, Mismatches: 21, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 86 0.69
40 38 0.31
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
Found at i:27458648 original size:78 final size:79
Alignment explanation
Indices: 27458490--27458673 Score: 271
Period size: 78 Copynumber: 2.3 Consensus size: 79
27458480 CTCGTTCAAA
* * **
27458490 TGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATAT
1 TGCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATAT
27458555 CACAATTTGCACAAT
65 CACAATTTGCACAAT
* ** * *
27458570 TGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGGTATC
1 TGCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
27458634 ACAATTTGCACAAT
66 ACAATTTGCACAAT
27458648 TGCCTTCGGGCTTAGCCCGGATATCA
1 TGCCTTCGGGCTTAGCCCGGATATCA
27458674 CTCGAACATT
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 10 0.11
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (79 bp):
TGCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
ACAATTTGCACAAT
Found at i:27461617 original size:50 final size:49
Alignment explanation
Indices: 27461540--27461727 Score: 173
Period size: 50 Copynumber: 3.8 Consensus size: 49
27461530 ATTGTGAATA
* * *
27461540 CACATGTGTATTACTAAGTGGAGGCTACTACGTGTACCATACTATTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACT-TCAAGT
* * * *
27461590 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGA-T
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-AT-ACTTCAAGT
* * * * * *
27461641 CACATGTGTAGTACTAAGTGCAAGCTACTACGTATATCAGA-TGGTGAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACT--TCAAGT
* *
27461691 CACGTGTGTAGTACTAAGTGCAGGCTAGTACGTGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC
27461728 TGGATTGTTG
Statistics
Matches: 110, Mismatches: 22, Indels: 12
0.76 0.15 0.08
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 2 0.02
50 66 0.60
51 33 0.30
52 4 0.04
53 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (49 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTTCAAGT
Found at i:27461780 original size:99 final size:100
Alignment explanation
Indices: 27461594--27461781 Score: 236
Period size: 99 Copynumber: 1.9 Consensus size: 100
27461584 TTAAGTCGCA
* *
27461594 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCACATGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAATGA-TTCGATCACATGTGTAGTACTAAA
* *
27461659 TGCAAGCTACTACGTATATCAGATGGTGAGGTCACG
65 TGCAACCTACTACGCATATCAGATGGTGAGGTCACG
* * * * * *
27461695 TGTGTAGTACTAAGTGCAGGCTAGTACGTGTACTGGATTG-TT-GGTCGCATGTGTAGTACTAAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACT-CAATGATTCGATCACATGTGTAGTACTAAA
* *
27461758 TGCAACCTACTATGCGTATCAGAT
65 TGCAACCTACTACGCATATCAGAT
27461782 AGCTTCGGCT
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
99 38 0.51
100 2 0.03
101 31 0.42
102 3 0.04
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAATGATTCGATCACATGTGTAGTACTAAAT
GCAACCTACTACGCATATCAGATGGTGAGGTCACG
Found at i:27465880 original size:40 final size:41
Alignment explanation
Indices: 27465834--27466054 Score: 267
Period size: 40 Copynumber: 5.5 Consensus size: 41
27465824 GCTCGATTGT
* * *
27465834 CTTCGGGACA-TAGCCCAG-TTATAGTAATTCGCACAAATGC
1 CTTCGGGACATTAACCCGGATT-TAGTAACTCGCACAAATGC
* * *
27465874 CCTCGGGAC-TTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATTAACCCGGATTTAGTAACTCGCACAAATGC
27465914 CTTCGGGA-ATTAACCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACATTAACCCGGATTTAGTAACTCGCACAAATGC
27465954 CTTCGGGA-ATTAACCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACATTAACCCGGATTTAGTAACTCGCACAAATGC
* * * * *
27465994 CTTCGGGAC-TTAATCTGGATTTAGTCAATTAGCACAAAAGC
1 CTTCGGGACATTAACCCGGATTTAGT-AACTCGCACAAATGC
*
27466035 CTTCGGGAC-TTAGCCCGGAT
1 CTTCGGGACATTAACCCGGAT
27466055 ACCATTCAAA
Statistics
Matches: 160, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
40 129 0.81
41 31 0.19
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (41 bp):
CTTCGGGACATTAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:27478411 original size:40 final size:40
Alignment explanation
Indices: 27478356--27478557 Score: 271
Period size: 40 Copynumber: 5.0 Consensus size: 40
27478346 TGAATGATAC
* ** *
27478356 CCGGGCTAAGTCCCGAAGGCATTTACGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
27478396 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
27478436 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
27478476 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
27478516 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
27478556 CC
1 CC
27478558 AGCTAAATTC
Statistics
Matches: 144, Mismatches: 17, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
40 142 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:27478489 original size:80 final size:80
Alignment explanation
Indices: 27478352--27478557 Score: 306
Period size: 80 Copynumber: 2.6 Consensus size: 80
27478342 CATTTGAATG
* **
27478352 ATACCCGGGCTAAGTCCCGAAGGCATTTACGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGC
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
*
27478416 ATTCGTGCGAGTTGTT
65 ATTCGTGCGAGTTGCT
*
27478432 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
*
27478497 TTTGTGCGAGTTGCT
66 TTCGTGCGAGTTGCT
* * * *
27478512 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCC
27478558 AGCTAAATTC
Statistics
Matches: 114, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
80 112 0.98
81 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTTGCT
Found at i:27480565 original size:14 final size:14
Alignment explanation
Indices: 27480546--27480580 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
27480536 GTTGATTCTT
*
27480546 TTGAAAAGTAGAAA
1 TTGAAAAGCAGAAA
27480560 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
27480574 TTGAAAA
1 TTGAAAA
27480581 TACCTCAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.20, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:27480810 original size:75 final size:75
Alignment explanation
Indices: 27480727--27480902 Score: 257
Period size: 75 Copynumber: 2.3 Consensus size: 75
27480717 TTTTTTGATT
*
27480727 TTTTTTTGAAAGACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCACA
1 TTTTTTTGAAA-ACAGAAATTGAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCACA
27480791 ATATGAGTTAA
65 ATATGAGTTAA
* *
27480802 TTTTTTTGAAAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
1 TTTTTTTG-AAAACAGAAATTGAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCACA
*
27480866 ATATGAGTTGA
65 ATATGAGTTAA
* *
27480877 TTCTTTTGAAAAGTAGAAATTGAAAA
1 TTTTTTTGAAAA-CAGAAATTGAAAA
27480903 GCAGAAATTG
Statistics
Matches: 91, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
74 8 0.09
75 76 0.84
76 7 0.08
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.31
Consensus pattern (75 bp):
TTTTTTTGAAAACAGAAATTGAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCACAA
TATGAGTTAA
Found at i:27480901 original size:14 final size:14
Alignment explanation
Indices: 27480882--27480916 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
27480872 GTTGATTCTT
*
27480882 TTGAAAAGTAGAAA
1 TTGAAAAGCAGAAA
27480896 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
27480910 TTGAAAA
1 TTGAAAA
27480917 TACCTTAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.20, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:27480960 original size:91 final size:85
Alignment explanation
Indices: 27480811--27482173 Score: 825
Period size: 91 Copynumber: 16.0 Consensus size: 85
27480801 ATTTTTTTGA
*
27480811 AAAACAGAAATT-AAAATTACCTCAG--CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAATTGAAAA-TACCTCAGCACGTGACC-GA-GCTCAACTCACCTCTCGCAATATGAG
27480873 TTGATTCTTTTGAAAAGTAGAAATTG
63 TTGATT-TTTTGAAAA--AGAAATTG
* *
27480899 AAAAGCAGAAATTGAAAATACCTTAGCACGTGAGCCGAGCCTCAACTTACCTCTCGCAATATGAG
1 AAAA-CAGAAATTGAAAATACCTCAGCACGTGA-CCGAG-CTCAACTCACCTCTCGCAATATGAG
*
27480964 TTGGA-TTTTTGAAAAATAAATTG
63 TT-GATTTTTTGAAAAAGAAATTG
* * *
27480987 ACAAACGGAAATTGAAAATACCTCAGCATCTTGA--G-GCTCAACTCACCTTTCGCAATATGAGT
1 A-AAACAGAAATTGAAAATACCTCAGCA-CGTGACCGAGCTCAACTCACCTCTCGCAATATGAGT
* ****** *
27481049 TGATTTTTT--TATTTTTTTTT
64 TGATTTTTTGAAAAAGAAATTG
* *
27481069 AAAGACAGAAATTGAAAATACCTCA--ACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAA-ACAGAAATTGAAAATACCTCAGCACGTGAC-CGA-GCTCAACTCACCTCTCGCAATATGAG
*
27481132 TTGATTTTTTTG-AAAA-ACA--G
63 TTGA-TTTTTTGAAAAAGAAATTG
** *
27481152 AAATTA-AAA-T-----TACCTCAGCATGTCCTGA--G-GCTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAATTGAAAATACCTCAGCA---CGTGACCGAGCTCAACTCACCTCTCGCAATATGAG
27481207 TTGATTCTTTTGAAAAGTAGAAATTG
63 TTGATT-TTTTGAAAA--AGAAATTG
* *
27481233 AAAAGCAGAAATTGAAAATACCTTAGCACGTGAGCCGAGGATCAACTCACCTCTCGCAATATGAG
1 AAAA-CAGAAATTGAAAATACCTCAGCACGTGA-CCGA-GCTCAACTCACCTCTCGCAATATGAG
* *
27481298 CTGGA-TTTTTGAAAAATAAATTG
63 -TTGATTTTTTGAAAAAGAAATTG
* * *
27481321 ACAAACGGAAATTGAAAATACCTCAGCGTCTTGA--G-GCTCAACTCACCTCTCGCAATATGAGT
1 A-AAACAGAAATTGAAAATACCTCAGC-ACGTGACCGAGCTCAACTCACCTCTCGCAATATGAGT
*******
27481383 TGATTTTTTTG-ATTTTTTTTTG
64 TGA-TTTTTTGAAAAAGAAATTG
* * *
27481405 AAAGACAGAAATTGAAAACACCTCA--ACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAA-ACAGAAATTGAAAATACCTCAGCACGTGAC-CGA-GCTCAACTCACCTCTCGCAATATGAG
*
27481468 TTGATTTTTTTG-AAAA-ACA--G
63 TTGA-TTTTTTGAAAAAGAAATTG
** * *
27481488 AAATTA-AAA-T-----TACCTCAGCGTGTCCTGA--G-GCTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAATTGAAAATACCTCAGC---ACGTGACCGAGCTCAACTCACCTCTCGCAATATGAG
*
27481543 TGGATTCTTTTGAAAAGTAGAAATTG
63 TTGATT-TTTTGAAAA--AGAAATTG
* *
27481569 AAAAGCAGAAATTGAAAATACCTTAGCACGTGAGCCGAGGCTCAACTTACCTCTCGCAATATGAG
1 AAAA-CAGAAATTGAAAATACCTCAGCACGTGA-CCGA-GCTCAACTCACCTCTCGCAATATGAG
*
27481634 TTGGA-TTTTTGAAAAATAAATTG
63 TT-GATTTTTTGAAAAAGAAATTG
* * *
27481657 ACAAACGGAAATTGAAAATACCTCAGCGTCTTGA--G-GCTCAACTCACCTCTCGCAATATGAGT
1 A-AAACAGAAATTGAAAATACCTCAGC-ACGTGACCGAGCTCAACTCACCTCTCGCAATATGAGT
*******
27481719 TGATTTTTTTG-ATTTTTTTTTG
64 TGA-TTTTTTGAAAAAGAAATTG
* * *
27481741 AAAGACAGAAATTGAAAATATCTCA--ACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAA-ACAGAAATTGAAAATACCTCAGCACGTGAC-CGA-GCTCAACTCACCTCTCGCAATATGAG
*
27481804 TTGATTTTTTG---AA-AAATAG
63 TTGATTTTTTGAAAAAGAAATTG
** ** * *
27481823 AAATTA-AAA-T-----TACCTCAATGTGTCCTGA--G-GCTCAACTCATCTCTCGCAATATGAG
1 AAAACAGAAATTGAAAATACCTC-A-G-CACGTGACCGAGCTCAACTCACCTCTCGCAATATGAG
27481878 TTGATTCTTTTGAAAAATAGAAATTG
63 TTGATT-TTTTG-AAAA-AGAAATTG
27481904 AAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAA-CAGAAATTGAAAATACCTCAGCACGTGA-CCGA-GCTCAACTCACCTCTCGCAATATGAG
* *
27481969 TTGCTTTTTTGGAAAAACAAAATTTG
63 TTGATTTTTT-GAAAAA-GAAA-TTG
* ** * * * *
27481995 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCATCACTCGCAATATGAG
1 -AAAACAGAAATTGAAAATACCTCAGCACGTGA-CCGA-GCTCAACTCACCTCTCGCAATATGAG
*
27482060 CTGACTTTTTTGAAACACAGAAATTG
63 TTGA-TTTTTTGAAA-A-AGAAATTG
* * * * * * *
27482086 ATGAACAGAAATGGAAAACACCTCAGCGTCTTGA--G-GTTCAACTCACCTCTCACAATATGAGT
1 A-AAACAGAAATTGAAAATACCTCAGC-ACGTGACCGAGCTCAACTCACCTCTCGCAATATGAGT
*
27482148 TGA-TTTTTGACAAACAAAAATTG
64 TGATTTTTTGA-AAA-AGAAATTG
27482171 AAA
1 AAA
27482174 TTACCTCAGC
Statistics
Matches: 1009, Mismatches: 141, Indels: 254
0.72 0.10 0.18
Matches are distributed among these distances:
74 40 0.04
75 88 0.09
76 7 0.01
77 3 0.00
78 2 0.00
79 12 0.01
80 13 0.01
81 31 0.03
82 36 0.04
83 27 0.03
84 167 0.17
85 43 0.04
86 87 0.09
87 26 0.03
88 90 0.09
89 63 0.06
90 44 0.04
91 203 0.20
92 26 0.03
93 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (85 bp):
AAAACAGAAATTGAAAATACCTCAGCACGTGACCGAGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTGAAAAAGAAATTG
Found at i:27481184 original size:75 final size:75
Alignment explanation
Indices: 27481061--27481236 Score: 264
Period size: 75 Copynumber: 2.3 Consensus size: 75
27481051 ATTTTTTTAT
* * * *
27481061 TTTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAA
1 TTTTTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAA
27481126 TATGAGTTGA
66 TATGAGTTGA
*
27481136 TTTTTTTGAAAAACAGAAATT-AAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCA
1 TTTTTTTGAAAAACAGAAATTGAAAA-TACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCA
27481200 ATATGAGTTGA
65 ATATGAGTTGA
* **
27481211 TTCTTTTGAAAAGTAGAAATTGAAAA
1 TTTTTTTGAAAAACAGAAATTGAAAA
27481237 GCAGAAATTG
Statistics
Matches: 91, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
74 4 0.04
75 83 0.91
76 4 0.04
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (75 bp):
TTTTTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGA
Found at i:27481235 original size:14 final size:14
Alignment explanation
Indices: 27481216--27481250 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
27481206 GTTGATTCTT
*
27481216 TTGAAAAGTAGAAA
1 TTGAAAAGCAGAAA
27481230 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
27481244 TTGAAAA
1 TTGAAAA
27481251 TACCTTAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.20, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:27481482 original size:75 final size:75
Alignment explanation
Indices: 27481397--27481572 Score: 257
Period size: 75 Copynumber: 2.3 Consensus size: 75
27481387 TTTTTTGATT
*
27481397 TTTTTTTGAAAGACAGAAATTGAAAA-CACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCA
1 TTTTTTTGAAA-ACAGAAATTGAAAATCACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCA
*
27481461 ATATGAGTTGA
65 ATATGAGTGGA
* *
27481472 TTTTTTTGAAAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
1 TTTTTTTG-AAAACAGAAATTGAAAATCACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCA
27481536 ATATGAGTGGA
65 ATATGAGTGGA
* *
27481547 TTCTTTTGAAAAGTAGAAATTGAAAA
1 TTTTTTTGAAAA-CAGAAATTGAAAA
27481573 GCAGAAATTG
Statistics
Matches: 91, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
74 8 0.09
75 76 0.84
76 7 0.08
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (75 bp):
TTTTTTTGAAAACAGAAATTGAAAATCACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAA
TATGAGTGGA
Found at i:27481571 original size:14 final size:14
Alignment explanation
Indices: 27481552--27481586 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
27481542 GTGGATTCTT
*
27481552 TTGAAAAGTAGAAA
1 TTGAAAAGCAGAAA
27481566 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
27481580 TTGAAAA
1 TTGAAAA
27481587 TACCTTAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.20, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:27481585 original size:670 final size:670
Alignment explanation
Indices: 27480433--27482684 Score: 3042
Period size: 670 Copynumber: 3.4 Consensus size: 670
27480423 GCATGTTGCC
* * * *
27480433 TGAGACTCAACTCACCTCTCGTAATACGAGTTGATTTTTTTG-ACAACAGAAATTAAAATTACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCT
* *
27480497 CAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATT
66 CAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATT
27480562 GAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
131 GAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
27480627 GTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAA
196 GTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAA
*
27480692 CTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAAATTGAAAATACC
261 CTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAAATTGAAAACACC
*
27480757 TCAACGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTAATTTTTTTGAAAAACAGAAAT
326 TCAACGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAAACAGAAAT
27480822 TAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAA
391 TAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAA
*
27480887 AAGTAGAAATTGAAAAGCAGAAATTGAAAATACCTTAGCACGTGAGCCGAGCCTCAACTTACCTC
456 AAGTAGAAATTGAAAAGCAGAAATTGAAAATACCTTAGCACGTGAGCCGAGGCTCAACTTACCTC
*
27480952 TCGCAATATGAGTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCATC
521 TCGCAATATGAGTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTC
*
27481017 TTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTATTTTTTTTTAAAGACAGAAATT
586 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTATTTTTTTTTAAAGACAGAAATT
27481082 GAAAATACCTCAACGTGTCT
651 GAAAATACCTCAACGTGTCT
27481102 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCT
* *
27481167 CAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATT
66 CAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATT
* *
27481232 GAAAAGCAGAAATTGAAAATACCTTAGCACGTGAGCCGAGGATCAACTCACCTCTCGCAATATGA
131 GAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
*
27481297 GCTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAA
196 GTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAA
27481362 CTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAAATTGAAAACACC
261 CTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAAATTGAAAACACC
*
27481427 TCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAAT
326 TCAACGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAAACAGAAAT
*
27481492 TAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTGGATTCTTTTGAA
391 TAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAA
27481557 AAGTAGAAATTGAAAAGCAGAAATTGAAAATACCTTAGCACGTGAGCCGAGGCTCAACTTACCTC
456 AAGTAGAAATTGAAAAGCAGAAATTGAAAATACCTTAGCACGTGAGCCGAGGCTCAACTTACCTC
27481622 TCGCAATATGAGTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTC
521 TCGCAATATGAGTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTC
27481687 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAAA
586 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-ATTTTTTTTT-AAAGACAGAAA
*
27481752 TTGAAAATATCTCAACGTGTCT
649 TTGAAAATACCTCAACGTGTCT
*
27481774 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAATAGAAATTAAAATTACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCT
* * *
27481838 CAATGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTCTTTTGAAAAATAGAAATT
66 CAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATT
27481903 GAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
131 GAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
** * * * * * *
27481968 GTTGCTTTTTTGGAAAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAA
196 GTTGGATTTTT-GAAAAA-TAAA-TTGACAAACGGAAATTGAAAATACCTCAGCGTCT---T-GA
* * * * ******* *
27482033 GGCTCAACTCATCACTCGCAATATGAGCTGACTTTTTTGAAACACAGAAATTG-ATGAACAGAAA
254 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG--A-TTTTTTTTTGAAAG-ACAGAAA
* * *
27482097 TGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCACAATATGAGTTGA--TTTTTGA
315 TTGAAAACACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGA
* * * * * *
27482158 CAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTG
380 AAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * * *
27482221 ATT-TTTT------T-G--A---AAAA-CAGAAATTGAAAATACCTCA--AAGTG-TCTTGAGGT
445 ATTCTTTTGAAAAGTAGAAATTGAAAAGCAGAAATTGAAAATACCTTAGCACGTGAGC-CGAGGC
* * **
27482269 TCAACTCACCTCTCGCAATATGAGCT-GATTTTT----TTTAAA--GAC--A--GAAATTGAAAA
509 TCAACTTACCTCTCGCAATATGAGTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAA
*
27482323 TACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT-A-------A---TTTTT
574 TACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTATTTTTTTT
* * * * * *
27482377 GACAA-ACAAAAATTGAAATTACCTCAGCATGTCC
637 TA-AAGACAGAAATTGAAAATACCTCAACGTGTCT
*
27482411 TGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAA-TACC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATT-AAAATTACC
* * *
27482475 TCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA---GTTT------T-G--A-
65 TCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAAT
* * * * * *
27482527 --CAAA-CAAAAATTGAAATTACCTCAG--CGTG-TCCTGAGGCTTAACTCACTTCTCGCAATAT
130 TGAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCC-GAGGCTCAACTCACCTCTCGCAATAT
* * * * *
27482586 GAGTT-GATTTTTTTAGAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTG
194 GAGTTGGA--TTTTT-GAAAAATAAATT-GACAAACGGAAATTGAAAATACCTCAGC--GTCTTG
27482650 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
253 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
27482685 GAAAAGCAGA
Statistics
Matches: 1454, Mismatches: 103, Indels: 103
0.88 0.06 0.06
Matches are distributed among these distances:
618 31 0.02
619 5 0.00
620 60 0.04
621 10 0.01
622 21 0.01
623 3 0.00
626 1 0.00
628 1 0.00
629 1 0.00
635 3 0.00
637 57 0.04
638 71 0.05
639 4 0.00
641 1 0.00
648 17 0.01
649 2 0.00
650 38 0.03
652 3 0.00
654 4 0.00
658 8 0.01
659 32 0.02
661 19 0.01
662 4 0.00
665 1 0.00
667 1 0.00
668 1 0.00
669 39 0.03
670 571 0.39
671 170 0.12
672 72 0.05
673 3 0.00
674 34 0.02
675 36 0.02
677 31 0.02
678 36 0.02
679 37 0.03
680 4 0.00
681 22 0.02
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (670 bp):
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCT
CAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATT
GAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAA
CTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAAATTGAAAACACC
TCAACGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAAACAGAAAT
TAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAA
AAGTAGAAATTGAAAAGCAGAAATTGAAAATACCTTAGCACGTGAGCCGAGGCTCAACTTACCTC
TCGCAATATGAGTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTC
TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTATTTTTTTTTAAAGACAGAAATT
GAAAATACCTCAACGTGTCT
Found at i:27481605 original size:336 final size:336
Alignment explanation
Indices: 27480433--27482684 Score: 3005
Period size: 336 Copynumber: 6.9 Consensus size: 336
27480423 GCATGTTGCC
* * * *
27480433 TGAGACTCAACTCACCTCTCGTAATACGAGTTGATTTTTTTG-ACAACAGAAATTAAAATTACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCT
*
27480497 CAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATT
66 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATT
27480562 GAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
131 GAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
27480627 GTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAA
196 GTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAA
27480692 CTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAAATTGAAAATACC
261 CTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAAATTGAAAATACC
27480757 TCAACGTGTCT
326 TCAACGTGTCT
* *
27480768 TGAGGCTCAACTCACCTCTCACAATATGAGTTAATTTTTTTGAAAAACAGAAATTAAAATTACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCT
27480833 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATT
66 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATT
* * *
27480898 GAAAAGCAGAAATTGAAAATACCTTAGCACGTGAGCCGAGCCTCAACTTACCTCTCGCAATATGA
131 GAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
*
27480963 GTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCATCTTGAGGCTCAA
196 GTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAA
*
27481028 CTCACCTTTCGCAATATGAGTTGATTTTTTT-ATTTTTTTTT-AAAGACAGAAATTGAAAATACC
261 CTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAAATTGAAAATACC
27481091 TCAACGTGTCT
326 TCAACGTGTCT
27481102 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCT
*
27481167 CAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATT
66 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATT
* *
27481232 GAAAAGCAGAAATTGAAAATACCTTAGCACGTGAGCCGAGGATCAACTCACCTCTCGCAATATGA
131 GAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
*
27481297 GCTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAA
196 GTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAA
*
27481362 CTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAAATTGAAAACACC
261 CTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAAATTGAAAATACC
27481427 TCAACGTGTCT
326 TCAACGTGTCT
27481438 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCT
*
27481503 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTGGATTCTTTTGAAAAGTAGAAATT
66 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATT
* *
27481568 GAAAAGCAGAAATTGAAAATACCTTAGCACGTGAGCCGAGGCTCAACTTACCTCTCGCAATATGA
131 GAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
27481633 GTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAA
196 GTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAA
*
27481698 CTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAAATTGAAAATATC
261 CTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAAATTGAAAATACC
27481763 TCAACGTGTCT
326 TCAACGTGTCT
*
27481774 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAATAGAAATTAAAATTACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCT
** * *
27481838 CAATGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTCTTTTGAAAAATAGAAATT
66 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATT
27481903 GAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
131 GAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
** * * * * * *
27481968 GTTGCTTTTTTGGAAAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAA
196 GTTGGATTTTT-GAAAAA-TAAA-TTGACAAACGGAAATTGAAAATACCTCAGCGTCT---T-GA
* * * * ******* *
27482033 GGCTCAACTCATCACTCGCAATATGAGCTGACTTTTTTGAAACACAGAAATTG-ATGAACAGAAA
254 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG--A-TTTTTTTTTGAAAG-ACAGAAA
* * *
27482097 TGGAAAACACCTC-A-GCGTCT
315 TTGAAAATACCTCAACGTGTCT
* * * * *
27482117 TGAGGTTCAACTCACCTCTCACAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATTACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCT
* * *
27482180 CAGC--GTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATT-TTTT------T-G--A--
66 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATT
* * * *
27482231 -AAAA-CAGAAATTGAAAATACCTCA--AAGTG-TCTTGAGGTTCAACTCACCTCTCGCAATATG
131 GAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGC-CGAGGCTCAACTCACCTCTCGCAATATG
* ** *
27482291 AGCT-GATTTTT----TTTAAA--GAC--A--GAAATTGAAAATACCTCAATGTGTCTTGAGGCT
195 AGTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTC-A-GCGTCTTGAGGCT
* *
27482345 CAACTCACCTCTCGCAATATGAGTT-A--------A----TTTTTGACAA-ACAAAAATTGAAAT
258 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGA-AAGACAGAAATTGAAAA
* * *
27482396 TACCTCAGCATGTCC
322 TACCTCAACGTGTCT
*
27482411 TGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAA-TACC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATT-AAAATTACC
* * * *
27482475 TCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA---GTTT------T-G--A-
65 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAAT
* * * * * *
27482527 --CAAA-CAAAAATTGAAATTACCTCAG--CGTG-TCCTGAGGCTTAACTCACTTCTCGCAATAT
130 TGAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCC-GAGGCTCAACTCACCTCTCGCAATAT
* * * * *
27482586 GAGTT-GATTTTTTTAGAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTG
194 GAGTTGGA--TTTTT-GAAAAATAAATT-GACAAACGGAAATTGAAAATACCTCAGC--GTCTTG
27482650 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
253 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
27482685 GAAAAGCAGA
Statistics
Matches: 1739, Mismatches: 130, Indels: 117
0.88 0.07 0.06
Matches are distributed among these distances:
292 19 0.01
294 35 0.02
296 86 0.05
297 4 0.00
298 40 0.02
303 4 0.00
306 1 0.00
307 1 0.00
308 29 0.02
309 2 0.00
310 67 0.04
311 2 0.00
312 5 0.00
314 2 0.00
317 3 0.00
323 6 0.00
324 33 0.02
326 20 0.01
327 4 0.00
330 1 0.00
332 1 0.00
333 1 0.00
334 315 0.18
335 218 0.13
336 642 0.37
337 3 0.00
338 30 0.02
339 4 0.00
340 36 0.02
341 1 0.00
342 63 0.04
343 37 0.02
344 4 0.00
345 20 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (336 bp):
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAATTACCT
CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATT
GAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAA
CTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAAATTGAAAATACC
TCAACGTGTCT
Found at i:27481817 original size:74 final size:75
Alignment explanation
Indices: 27481734--27481907 Score: 271
Period size: 74 Copynumber: 2.3 Consensus size: 75
27481724 TTTTTGATTT
* * * *
27481734 TTTTTTGAAAGACAGAAATTGAAAA-TATCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAA
1 TTTTTTGAAAAATAGAAATTGAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAA
27481798 TATGAGTTGA
66 TATGAGTTGA
* *
27481808 TTTTTTGAAAAATAGAAATT-AAAATTACCTCAATGTGTCCTGAGGCTCAACTCATCTCTCGCAA
1 TTTTTTGAAAAATAGAAATTGAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAA
27481872 TATGAGTTGA
66 TATGAGTTGA
27481882 TTCTTTTGAAAAATAGAAATTGAAAA
1 TT-TTTTGAAAAATAGAAATTGAAAA
27481908 GCAGAAATTG
Statistics
Matches: 91, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
73 4 0.04
74 65 0.71
75 18 0.20
76 4 0.04
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33
Consensus pattern (75 bp):
TTTTTTGAAAAATAGAAATTGAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGA
Found at i:27481906 original size:14 final size:14
Alignment explanation
Indices: 27481887--27481921 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
27481877 GTTGATTCTT
*
27481887 TTGAAAAATAGAAA
1 TTGAAAAACAGAAA
*
27481901 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
27481915 TTGAAAA
1 TTGAAAA
27481922 TACCTCAGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.03, G:0.17, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:27482012 original size:13 final size:14
Alignment explanation
Indices: 27481980--27482012 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
27481970 TGCTTTTTTG
27481980 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
27481994 GAAAAACAGAATTT
1 GAAAAACAAAATTT
27482008 GAAAA
1 GAAAA
27482013 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:27482287 original size:75 final size:75
Alignment explanation
Indices: 27482089--27482617 Score: 625
Period size: 75 Copynumber: 7.2 Consensus size: 75
27482079 GAAATTGATG
* * * *
27482089 AACAGAAATGGAAAACACCTC--AGCGTCTTGAGGTTCAACTCACCTCTCACAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAAAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGAT
*
27482151 -TTTTTGACA
66 TTTTTTGAAA
* * * *
27482160 AACAAAAATTGAAATTACCTC--AGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAAAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGAT
27482223 TTTTTTGAAA
66 TTTTTTGAAA
*
27482233 AACAGAAATTGAAAATACCTCAAAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCAAAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGAT
*
27482298 TTTTTTTAAA
66 TTTTTTGAAA
* * *
27482308 GACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT-A-
1 AACAGAAATTGAAAATACCTCAAAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGAT
* *
27482371 ATTTTTGACA
66 TTTTTTGAAA
* * * * * *
27482381 AACAAAAATTGAAATTACCTCAGCA-TGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGA
1 AACAGAAATTGAAAATACCTCA-AAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGA
27482445 TTTTTTTGAAA
65 TTTTTTTGAAA
* * *
27482456 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAAAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGAT
* *
27482520 -GTTTTGACA
66 TTTTTTGAAA
* * ** * *
27482529 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTT-AACTCACTTCTCGCAATATGAGTTGA
1 AACAGAAATTGAAAATACCTCAAAGTGTCTTGAGG-TTCAACTCACCTCTCGCAATATGAGTTGA
*
27482593 TTTTTTT-AGA
65 TTTTTTTGAAA
* *
27482603 AACATAAATTAAAAA
1 AACAGAAATTGAAAA
27482618 AACGAAAATT
Statistics
Matches: 397, Mismatches: 50, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
71 56 0.14
73 150 0.38
74 17 0.04
75 174 0.44
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (75 bp):
AACAGAAATTGAAAATACCTCAAAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTGAAA
Found at i:27482393 original size:148 final size:146
Alignment explanation
Indices: 27482117--27482617 Score: 654
Period size: 148 Copynumber: 3.4 Consensus size: 146
27482107 CTCAGCGTCT
* * *
27482117 TGAGGTTCAACTCACCTCTCACAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATTACCT
1 TGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAACAGAAATTGAAAATACCT
* * * * * *
27482180 C-AGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTG
65 CAAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTGACAAACAAAAATTG
* *
27482244 AAAATACCTCAAAGTGTCT
128 AAATTACCTCAAAGTGTCC
* *
27482263 TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTAAAGACAGAAATTGAAAATACCT
1 TGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCT
27482328 CAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAAAAATTGA
65 CAA-GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAAAAATTGA
*
27482393 AATTACCTCAGCA-TGTCC
129 AATTACCTCA-AAGTGTCC
* *
27482411 TGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCT
1 TGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTGAAAATACCT
* * *
27482476 CAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGA
65 CAA-GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAAAAATTGA
**
27482541 AATTACCTCAGCGTGTCC
129 AATTACCTCAAAGTGTCC
* * *
27482559 TGAGGCTT-AACTCACTTCTCGCAATATGAGTTGATTTTTTT-AGAAACATAAATTAAAAA
1 TGAGG-TTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAACAGAAATTGAAAA
27482618 AACGAAAATT
Statistics
Matches: 316, Mismatches: 29, Indels: 19
0.87 0.08 0.05
Matches are distributed among these distances:
146 33 0.10
147 16 0.05
148 225 0.71
149 7 0.02
150 35 0.11
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.31
Consensus pattern (146 bp):
TGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTC
AAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAAAAATTGAAA
TTACCTCAAAGTGTCC
Found at i:27482818 original size:14 final size:13
Alignment explanation
Indices: 27482788--27482832 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
27482778 TGATTTTTGA
27482788 AAAAACAGAAATT
1 AAAAACAGAAATT
**
27482801 AAAAGTAGAAATT
1 AAAAACAGAAATT
27482814 GAAAAACAGAAATT
1 -AAAAACAGAAATT
27482828 AAAAA
1 AAAAA
27482833 TACCCCGGCG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.69, C:0.04, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:27482844 original size:101 final size:101
Alignment explanation
Indices: 27482615--27482976 Score: 393
Period size: 101 Copynumber: 3.7 Consensus size: 101
27482605 CATAAATTAA
27482615 AAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAG-AAATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
27482679 TGA--TTTG-AAAAGCAGAATTTGTAAGGCAAAAATTG
64 TGATTTTTGAAAAAACAGAAATTGAAAAGCAAAAATTG
*
27482714 GAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
27482779 GATTTTTGAAAAAACAGAAATT-AAAAGTAGAAATTG
65 GATTTTTGAAAAAACAGAAATTGAAAAGCAAAAATTG
* * * *
27482815 AAAAACAGAAATTAAAAATACCCCGGCGTGCCTCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
27482880 GATTTTTG-AAAAGCATAAATT-----G-----A---
65 GATTTTTGAAAAAACAGAAATTGAAAAGCAAAAATTG
* *
27482903 AAAAACGGAAATTGAAAATACCTCAGCGTATGACCTGAGGCCCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCG--TG-CCTGAGGCTCAACTCACCTCTCGCAATATGAG
27482968 TTGATTTTT
63 TTGATTTTT
27482977 TTGAAATATA
Statistics
Matches: 234, Mismatches: 21, Indels: 25
0.84 0.08 0.09
Matches are distributed among these distances:
88 24 0.10
90 38 0.16
91 4 0.02
96 1 0.00
99 63 0.27
100 15 0.06
101 78 0.33
102 11 0.05
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGAAAAAACAGAAATTGAAAAGCAAAAATTG
Found at i:27482962 original size:90 final size:87
Alignment explanation
Indices: 27482809--27482976 Score: 239
Period size: 90 Copynumber: 1.9 Consensus size: 87
27482799 TTAAAAGTAG
* * *
27482809 AAATTGAAAAACAGAAATTAAAAATACCCCGGCGTGCCTCGAGGCTCAGCTCACCTCTCGCAATA
1 AAATTGAAAAACAGAAATTAAAAATACCCCAGCGTGCCTCGAGGCCCAACTCACCTCTCGCAATA
27482874 TGAGTTGATTTTTGAAAAGCAT
66 TGAGTTGATTTTTGAAAAGCAT
* * *
27482896 AAATTGAAAAAACGGAAATTGAAAATACCTCAGCGTATGACCT-GAGGCCCAACTCACCTCTCGC
1 AAATTG-AAAAACAGAAATTAAAAATACCCCAGCG--TG-CCTCGAGGCCCAACTCACCTCTCGC
27482960 AATATGAGTTGATTTTT
62 AATATGAGTTGATTTTT
27482977 TTGAAATATA
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
87 6 0.08
88 24 0.34
90 38 0.54
91 3 0.04
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (87 bp):
AAATTGAAAAACAGAAATTAAAAATACCCCAGCGTGCCTCGAGGCCCAACTCACCTCTCGCAATA
TGAGTTGATTTTTGAAAAGCAT
Found at i:27494869 original size:25 final size:23
Alignment explanation
Indices: 27494817--27494871 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
27494807 TATAAATAGT
27494817 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
27494840 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
27494865 AATAGTG
1 AATAGTG
27494872 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:27494958 original size:25 final size:24
Alignment explanation
Indices: 27494930--27495137 Score: 101
Period size: 25 Copynumber: 8.4 Consensus size: 24
27494920 AAATAATATA
*
27494930 AAAAAATATGTACATAATATAATGT
1 AAAAAATATATACATAATATAAT-T
*
27494955 AAAAAATACATACATAATATAATT
1 AAAAAATATATACATAATATAATT
*
27494979 --AAAATATATACATAAGATAACATGT
1 AAAAAATATATACATAATAT-A-AT-T
*
27495004 AGAAAAAAAATATATAAATAATATAGTATT
1 ----AAAAAATATATACATAATATA--ATT
* * *
27495034 -AAAGATATATACATAAAATAGTAT
1 AAAAAATATATACATAATATAAT-T
* *
27495058 AATATATATATACATAATATAGAATT
1 AAAAAATATATACATAATAT--AATT
* * *
27495084 --TAGA-ATATACCTAATAT-ATT
1 AAAAAATATATACATAATATAATT
27495104 AAAAGAATATAT--ATAATATAATAT
1 AAAA-AATATATACATAATATAAT-T
*
27495128 TAAAAATATA
1 AAAAAATATA
27495138 ATAATAACAA
Statistics
Matches: 142, Mismatches: 21, Indels: 42
0.69 0.10 0.20
Matches are distributed among these distances:
20 3 0.02
22 23 0.16
23 23 0.16
24 15 0.11
25 55 0.39
26 1 0.01
27 2 0.01
30 2 0.01
31 18 0.13
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.32
Consensus pattern (24 bp):
AAAAAATATATACATAATATAATT
Found at i:27494989 original size:22 final size:22
Alignment explanation
Indices: 27494917--27494998 Score: 85
Period size: 25 Copynumber: 3.6 Consensus size: 22
27494907 TATACATATG
* *
27494917 TATAAATAATATAA-AAAAATA
1 TATACATAATATAATTAAAATA
*
27494938 TGTACATAATATAATGTAAAAAATA
1 TATACATAATATAAT-T--AAAATA
*
27494963 CATACATAATATAATTAAAATA
1 TATACATAATATAATTAAAATA
*
27494985 TATACATAAGATAA
1 TATACATAATATAA
27494999 CATGTAGAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
21 12 0.24
22 18 0.36
24 1 0.02
25 19 0.38
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.30
Consensus pattern (22 bp):
TATACATAATATAATTAAAATA
Found at i:27495461 original size:16 final size:16
Alignment explanation
Indices: 27495423--27495461 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
27495413 TCTCCAAAAA
*
27495423 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
27495439 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
27495455 AATAACT
1 AAAAACT
27495462 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:27495656 original size:30 final size:30
Alignment explanation
Indices: 27495620--27495717 Score: 169
Period size: 30 Copynumber: 3.3 Consensus size: 30
27495610 AGGTACAAGT
*
27495620 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
27495650 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
* *
27495680 GGTGGTGGAGTAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
27495710 GGTGGTGG
1 GGTGGTGG
27495718 CAAAGGCTAG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 65 1.00
ACGTcount: A:0.18, C:0.05, G:0.51, T:0.26
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:27495707 original size:18 final size:18
Alignment explanation
Indices: 27495654--27495708 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
27495644 GGAGTAGGTG
*
27495654 GTGGAGCAAGTGTGGCTA
1 GTGGAGTAAGTGTGGCTA
27495672 GTGGAGT-AG-GT-G---
1 GTGGAGTAAGTGTGGCTA
27495684 GTGGAGTAAGTGTGGCTA
1 GTGGAGTAAGTGTGGCTA
27495702 GTGGAGT
1 GTGGAGT
27495709 TGGTGGTGGC
Statistics
Matches: 30, Mismatches: 1, Indels: 12
0.70 0.02 0.28
Matches are distributed among these distances:
12 7 0.23
13 2 0.07
14 2 0.07
15 2 0.07
16 2 0.07
17 2 0.07
18 13 0.43
ACGTcount: A:0.20, C:0.05, G:0.49, T:0.25
Consensus pattern (18 bp):
GTGGAGTAAGTGTGGCTA
Found at i:27503468 original size:26 final size:26
Alignment explanation
Indices: 27503439--27503490 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27503429 TTTAGTTTCC
**
27503439 TTAATTGTAGTTTCTTTTTCTACAAG
1 TTAATTGTAGTTTCTTAGTCTACAAG
*
27503465 TTAATTTTAGTTTCTTAGTCTACAAG
1 TTAATTGTAGTTTCTTAGTCTACAAG
27503491 AATAAAATCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.52
Consensus pattern (26 bp):
TTAATTGTAGTTTCTTAGTCTACAAG
Found at i:27506989 original size:10 final size:10
Alignment explanation
Indices: 27506973--27507017 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
27506963 AAAAAGAAAA
27506973 GGTGGGGTAG
1 GGTGGGGTAG
*
27506983 TGTGGGGTAG
1 GGTGGGGTAG
*
27506993 GGTAGGGTAG
1 GGTGGGGTAG
27507003 GGTGAGGGTTAG
1 GGTG-GGG-TAG
27507015 GGT
1 GGT
27507018 TAGGGTGTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
10 20 0.69
11 3 0.10
12 6 0.21
ACGTcount: A:0.13, C:0.00, G:0.62, T:0.24
Consensus pattern (10 bp):
GGTGGGGTAG
Found at i:27506997 original size:15 final size:16
Alignment explanation
Indices: 27506973--27507024 Score: 54
Period size: 15 Copynumber: 3.2 Consensus size: 16
27506963 AAAAAGAAAA
* *
27506973 GGTG-GGGTAGTGTGG
1 GGTGAGGGTAGGGTAG
27506988 GGT-AGGGTAGGGTAG
1 GGTGAGGGTAGGGTAG
27507003 GGTGAGGGTTAGGGTTAG
1 GGTGAGGG-TAGGG-TAG
27507021 GGTG
1 GGTG
27507025 TTTACAATTC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 15 0.48
16 4 0.13
17 5 0.16
18 7 0.23
ACGTcount: A:0.13, C:0.00, G:0.62, T:0.25
Consensus pattern (16 bp):
GGTGAGGGTAGGGTAG
Found at i:27507341 original size:7 final size:8
Alignment explanation
Indices: 27507326--27507350 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
27507316 TAAAATTTGA
27507326 TTTATTTT
1 TTTATTTT
27507334 TTTATTTT
1 TTTATTTT
27507342 TTTATTTT
1 TTTATTTT
27507350 T
1 T
27507351 AAATTATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTATTTT
Found at i:27507910 original size:2 final size:2
Alignment explanation
Indices: 27507903--27507929 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
27507893 GTTTTAGCAA
27507903 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
27507930 AATTTCAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:27511623 original size:19 final size:20
Alignment explanation
Indices: 27511601--27511642 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
27511591 ATAAATTACA
*
27511601 AAATAATTTTTAAAAA-TTC
1 AAATAATTTATAAAAATTTC
*
27511620 AAATTATTTATAAAAATTTC
1 AAATAATTTATAAAAATTTC
27511640 AAA
1 AAA
27511643 ATTTATACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (20 bp):
AAATAATTTATAAAAATTTC
Found at i:27511646 original size:18 final size:17
Alignment explanation
Indices: 27511605--27511649 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
27511595 ATTACAAAAT
*
27511605 AATTTTTAAAAATTCAA
1 AATTTATAAAAATTCAA
27511622 ATTATTTATAAAAATTTCAA
1 A--ATTTATAAAAA-TTCAA
27511642 AATTTATA
1 AATTTATA
27511650 CTTTAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
17 1 0.04
18 7 0.29
19 10 0.42
20 6 0.25
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTTATAAAAATTCAA
Found at i:27516582 original size:54 final size:52
Alignment explanation
Indices: 27516407--27516579 Score: 197
Period size: 54 Copynumber: 3.2 Consensus size: 52
27516397 TACATGGGAG
* *
27516407 CACTTATCACTTTTCTCCGATGCCATAGCCCAGCTATGGTCTTATACG-GAT
1 CACTTATCACTTTTATCCGATGCCATAGCCCAGCTATGGTCTTATACGATAT
* * *
27516458 CACTTGTATCA-TCTTAATCCGAAGCCATAACCCCAGCTATGGTCTTATACGGATAT
1 CAC-T-TATCACT-TTTATCCGATGCCAT-AGCCCAGCTATGGTCTTATAC-GATAT
* * *
27516514 CGCTTATCACTTGTTTTTCGATGCCATAGCCCAGCTATGGTCTTATACGAATAT
1 CACTTATCACTT-TTATCCGATGCCATAGCCCAGCTATGGTCTTATACG-ATAT
27516568 CACTTATCACTT
1 CACTTATCACTT
27516580 GTTGCCATGG
Statistics
Matches: 101, Mismatches: 12, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
51 3 0.03
52 2 0.02
53 18 0.18
54 61 0.60
55 13 0.13
56 4 0.04
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.34
Consensus pattern (52 bp):
CACTTATCACTTTTATCCGATGCCATAGCCCAGCTATGGTCTTATACGATAT
Found at i:27523579 original size:4 final size:4
Alignment explanation
Indices: 27523570--27523605 Score: 54
Period size: 4 Copynumber: 8.5 Consensus size: 4
27523560 AGAACAGGGG
27523570 AGAA AGAA AGGAA AGAA AGGAA AGAA AGAA AGAA AG
1 AGAA AGAA A-GAA AGAA A-GAA AGAA AGAA AGAA AG
27523606 GGAGAAAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 22 0.73
5 8 0.27
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:27523585 original size:9 final size:9
Alignment explanation
Indices: 27523571--27523606 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
27523561 GAACAGGGGA
27523571 GAAAGAAAG
1 GAAAGAAAG
27523580 GAAAGAAAG
1 GAAAGAAAG
27523589 GAAAGAAA-
1 GAAAGAAAG
27523597 GAAAGAAAG
1 GAAAGAAAG
27523606 G
1 G
27523607 GAGAAAAGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.31
9 18 0.69
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (9 bp):
GAAAGAAAG
Found at i:27523586 original size:13 final size:13
Alignment explanation
Indices: 27523570--27523606 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
27523560 AGAACAGGGG
27523570 AGAAAGAAAGGAA
1 AGAAAGAAAGGAA
27523583 AGAAAGGAAA-GAA
1 AGAAA-GAAAGGAA
27523596 AGAAAGAAAGG
1 AGAAAGAAAGG
27523607 GAGAAAAGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.18
13 14 0.64
14 4 0.18
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (13 bp):
AGAAAGAAAGGAA
Found at i:27523614 original size:13 final size:12
Alignment explanation
Indices: 27523570--27523612 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
27523560 AGAACAGGGG
27523570 AGAAAGAAAGGAA
1 AGAAAGAAAGG-A
*
27523583 AGAAAGGAAAGAA
1 AGAAA-GAAAGGA
*
27523596 AGAAAGAAAGGG
1 AGAAAGAAAGGA
27523608 AGAAA
1 AGAAA
27523613 AGGGAAAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
12 10 0.38
13 11 0.42
14 5 0.19
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (12 bp):
AGAAAGAAAGGA
Found at i:27524833 original size:15 final size:15
Alignment explanation
Indices: 27524810--27524857 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
27524800 TATCAAATTT
27524810 ATATTGATTGAAATC
1 ATATTGATTGAAATC
* * *
27524825 ATTTTGATTGAATTT
1 ATATTGATTGAAATC
27524840 ATATTGATTGAAAT-
1 ATATTGATTGAAATC
27524854 ATAT
1 ATAT
27524858 ATTATATATA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 4 0.14
15 24 0.86
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (15 bp):
ATATTGATTGAAATC
Found at i:27525512 original size:18 final size:19
Alignment explanation
Indices: 27525491--27525531 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
27525481 AATGAAATGA
27525491 GAAATTGA-AT-TGAGAATT
1 GAAATTGATATATGAG-ATT
27525509 GAAATTGATATATGAGATT
1 GAAATTGATATATGAGATT
27525528 GAAA
1 GAAA
27525532 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.22, T:0.32
Consensus pattern (19 bp):
GAAATTGATATATGAGATT
Found at i:27527558 original size:53 final size:51
Alignment explanation
Indices: 27527412--27527559 Score: 181
Period size: 53 Copynumber: 2.8 Consensus size: 51
27527402 TCTCCGATAT
*
27527412 CATAGCCCAGCTATGGTCTTATACG-GATCACTTGTATCACCTTAATCCGAAGC
1 CATAGCCCAGCTATGGTCTTATACGATATCAC-T-TATCA-CTTAATCCGAAGC
* * * *
27527465 CATAGCCCAGCTATGGTCTTATACGGATATCGCTTATCACTTATTTTCGATGC
1 CATAGCCCAGCTATGGTCTTATAC-GATATCACTTATCACTTA-ATCCGAAGC
*
27527518 CATGGCCCAGCTATGGTCTTATACGAATATCACTTATCACTT
1 CATAGCCCAGCTATGGTCTTATACG-ATATCACTTATCACTT
27527560 GTTGCCATGG
Statistics
Matches: 84, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
52 5 0.06
53 73 0.87
54 2 0.02
55 4 0.05
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.32
Consensus pattern (51 bp):
CATAGCCCAGCTATGGTCTTATACGATATCACTTATCACTTAATCCGAAGC
Found at i:27533683 original size:27 final size:26
Alignment explanation
Indices: 27533641--27533725 Score: 107
Period size: 27 Copynumber: 3.2 Consensus size: 26
27533631 GGAGGAAGCT
*
27533641 TTCTGGTGGCTATGCCACAAATATCTG
1 TTCTGGTGGCTCTGCCAC-AATATCTG
*
27533668 TTCTAGTGGCTCTGCCACAATATCTG
1 TTCTGGTGGCTCTGCCACAATATCTG
** *
27533694 TATCTGGTAACTCTGTCACAATATCTG
1 T-TCTGGTGGCTCTGCCACAATATCTG
27533721 TTCTG
1 TTCTG
27533726 TCAGCCATGC
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 13 0.25
27 38 0.75
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCACAATATCTG
Found at i:27541350 original size:27 final size:26
Alignment explanation
Indices: 27541308--27541393 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 26
27541298 GGATAAAGCG
27541308 TTCTGGTGGCTATGCCACAAATATCTA
1 TTCTGGTGGCTATGCCAC-AATATCTA
* * *
27541335 TTCTTGTGGCTCTGCCACAATATCTG
1 TTCTGGTGGCTATGCCACAATATCTA
** * * *
27541361 TATCTGGTAACTCTGTCACAATATCTG
1 T-TCTGGTGGCTATGCCACAATATCTA
27541388 TTCTGG
1 TTCTGG
27541394 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 13 0.25
27 38 0.75
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (26 bp):
TTCTGGTGGCTATGCCACAATATCTA
Found at i:27544155 original size:13 final size:13
Alignment explanation
Indices: 27544123--27544157 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
27544113 CTAAGGGGTG
*
27544123 CCACTAAGTGATA
1 CCACTAAGTGACA
*
27544136 CCGCTAAGTGACA
1 CCACTAAGTGACA
27544149 CCACTAAGT
1 CCACTAAGT
27544158 AATACTGTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (13 bp):
CCACTAAGTGACA
Found at i:27545046 original size:12 final size:12
Alignment explanation
Indices: 27545025--27545058 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
27545015 TATATTTTTT
*
27545025 AAAATTATATAA
1 AAAATAATATAA
27545037 AAAATAATATAA
1 AAAATAATATAA
*
27545049 AAATTAATAT
1 AAAATAATAT
27545059 GGGCGGGCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:27547418 original size:13 final size:13
Alignment explanation
Indices: 27547402--27547427 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27547392 CCTTTTCCCC
27547402 CTTTCTTTCTTTT
1 CTTTCTTTCTTTT
27547415 CTTTCTTTCTTTT
1 CTTTCTTTCTTTT
27547428 TCTCCCCTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
CTTTCTTTCTTTT
Found at i:27547792 original size:29 final size:29
Alignment explanation
Indices: 27547746--27547804 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
27547736 TTGTCTTTTC
* *
27547746 TTAATTTATTTTAAAATATAATAATATAA
1 TTAATTTAATTTAAAATATAATAAAATAA
**
27547775 TTAATTTAATTTGTAATATAATAAAATAA
1 TTAATTTAATTTAAAATATAATAAAATAA
27547804 T
1 T
27547805 AACATTAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (29 bp):
TTAATTTAATTTAAAATATAATAAAATAA
Found at i:27557532 original size:19 final size:20
Alignment explanation
Indices: 27557482--27557525 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
27557472 AAATAGACAT
*
27557482 TTATT-TAAATATTAAATTA
1 TTATTATAATTATTAAATTA
*
27557501 TTGTTATAATTATT-AATTA
1 TTATTATAATTATTAAATTA
27557520 TTATTA
1 TTATTA
27557526 ATATTATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
TTATTATAATTATTAAATTA
Found at i:27557921 original size:20 final size:19
Alignment explanation
Indices: 27557896--27557934 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
27557886 GCAGGGGAAG
*
27557896 GAAAGAAAGAAAGGAGAAAA
1 GAAAGAAAAAAAGG-GAAAA
27557916 GAAAGAAAAAAAGGGAAAA
1 GAAAGAAAAAAAGGGAAAA
27557935 TTCAAGGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (19 bp):
GAAAGAAAAAAAGGGAAAA
Found at i:27559295 original size:31 final size:31
Alignment explanation
Indices: 27559260--27559329 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
27559250 CTTGTCACTT
* *
27559260 GTAGCCGAAGCTATCACTATTCACTAATCAG
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
* * *
27559291 GTAGCCGGAGCTACCATTTTTCACTAATCAA
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
27559322 GTAGCCGA
1 GTAGCCGA
27559330 TGATCAGGTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTATTCACTAATCAA
Found at i:27559358 original size:46 final size:46
Alignment explanation
Indices: 27559286--27559373 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
27559276 CTATTCACTA
* *
27559286 ATCAGGTAGCCGGAGCTACCATTTTTCACTAATCAAGTAGCCGATG
1 ATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGATG
* * * *
27559332 ATCAGGTAGTCGAAGCTACCACTTTTCATTGATCAGGTAGCC
1 ATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCC
27559374 AAAGCTACCA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (46 bp):
ATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGATG
Found at i:27559368 original size:31 final size:31
Alignment explanation
Indices: 27559330--27559388 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
27559320 AAGTAGCCGA
* *
27559330 TGATCAGGTAGTCGAAGCTACCACTTTTCAT
1 TGATCAGGTAGCCAAAGCTACCACTTTTCAT
27559361 TGATCAGGTAGCCAAAGCTACCACTTTT
1 TGATCAGGTAGCCAAAGCTACCACTTTT
27559389 TACTTGCCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (31 bp):
TGATCAGGTAGCCAAAGCTACCACTTTTCAT
Found at i:27559461 original size:50 final size:50
Alignment explanation
Indices: 27559368--27559544 Score: 273
Period size: 50 Copynumber: 3.5 Consensus size: 50
27559358 CATTGATCAG
* * * * *
27559368 GTAGCCAAAGCTACCACTTTTTACTTGCCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
*
27559419 GTAGCTGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
27559469 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
27559519 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
27559545 GTTGCCATGG
Statistics
Matches: 117, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
50 96 0.82
51 21 0.18
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.35
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:27563301 original size:93 final size:93
Alignment explanation
Indices: 27563189--27563359 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
27563179 GCCCATAAGT
* *
27563189 GAACTCGGACTCAACTCAACGAGCTAGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
27563254 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
27563282 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
27563347 CGAGTTCGGATGC
66 CGAGCTCGGATGC
27563360 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:27563356 original size:46 final size:46
Alignment explanation
Indices: 27563181--27563356 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
27563171 TGTAACCCGC
* * * *
27563181 CCATAAGTGAACTCGGACTCAACTCAACGAGCTAGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
27563227 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
27563277 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
27563320 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
27563357 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 64 0.58
47 28 0.25
49 1 0.01
50 6 0.05
51 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:27565783 original size:30 final size:30
Alignment explanation
Indices: 27565739--27565827 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
27565729 CAAAGATAAC
*
27565739 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
27565768 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
27565798 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
27565828 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:27565787 original size:15 final size:14
Alignment explanation
Indices: 27565739--27565821 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
27565729 CAAAGATAAC
*
27565739 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
27565753 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
27565768 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
27565783 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
27565798 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
27565813 AAGAAACCC
1 AAGAAACCC
27565822 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:27565827 original size:15 final size:15
Alignment explanation
Indices: 27565750--27565827 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
27565740 AGAAAACCGA
27565750 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
27565765 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
27565779 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
27565794 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
27565810 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
27565825 ATA
1 ATA
27565828 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:27568777 original size:44 final size:44
Alignment explanation
Indices: 27568714--27568887 Score: 208
Period size: 44 Copynumber: 3.9 Consensus size: 44
27568704 TGTAACCCGC
*
27568714 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATTCGCAT
*
27568758 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATTCGC-A--T
* *** *
27568804 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG--ATTCGCAT
*
27568850 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAT
27568888 GCTCAACCAT
Statistics
Matches: 111, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 3 0.03
44 39 0.35
45 28 0.25
46 10 0.09
47 27 0.24
48 1 0.01
49 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATTCGCAT
Found at i:27568878 original size:92 final size:91
Alignment explanation
Indices: 27568722--27568889 Score: 284
Period size: 92 Copynumber: 1.8 Consensus size: 91
27568712 GCCCATAAGT
*
27568722 GAACTCGGACTCAACTCAACGAGCTCGGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACGAGCTCGGATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
27568787 AGCTCGGATGCCTAGTTACATCTCTC
66 AGCTCGGATGCCTAGTTACATCTCTC
*
27568813 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
27568877 CGAGTTCGGATGC
64 CGAGCTCGGATGC
27568890 TCAACCATCC
Statistics
Matches: 72, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
91 27 0.38
92 43 0.60
93 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGCTCGGATGCCTAGTTACATCTCTC
Found at i:27573150 original size:23 final size:22
Alignment explanation
Indices: 27573124--27573180 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
27573114 TACTTTTTCC
* *
27573124 TTTTTTTTGTTTTTCTTTTTAAG
1 TTTTTTTT-ATTTACTTTTTAAG
27573147 TTTTTATTTATTTACTTTTTAAG
1 TTTTT-TTTATTTACTTTTTAAG
27573170 -TTTTTTTATTT
1 TTTTTTTTATTT
27573181 GTCTTTTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 7 0.23
22 4 0.13
23 17 0.55
24 3 0.10
ACGTcount: A:0.14, C:0.04, G:0.05, T:0.77
Consensus pattern (22 bp):
TTTTTTTTATTTACTTTTTAAG
Found at i:27573233 original size:21 final size:21
Alignment explanation
Indices: 27573209--27573279 Score: 81
Period size: 21 Copynumber: 3.3 Consensus size: 21
27573199 ATTGGTTTTA
* *
27573209 TAAAATTTGAAATGTATATTT
1 TAAAATTTTAAATATATATTT
*
27573230 TAAATGTTTTATAATAT-TATTT
1 TAAA-ATTTTA-AATATATATTT
*
27573252 TAAAATTTTAAATATATTTTT
1 TAAAATTTTAAATATATATTT
27573273 TAAAATT
1 TAAAATT
27573280 ATTTTTAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
20 5 0.12
21 20 0.48
22 13 0.31
23 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (21 bp):
TAAAATTTTAAATATATATTT
Found at i:27573251 original size:22 final size:19
Alignment explanation
Indices: 27573209--27573271 Score: 63
Period size: 22 Copynumber: 3.1 Consensus size: 19
27573199 ATTGGTTTTA
*
27573209 TAAAATTTGAAATGTATATTT
1 TAAAATTTTAAA--TATATTT
*
27573230 TAAATGTTTTATAATATTATTT
1 TAAA-ATTTTA-AATA-TATTT
27573252 TAAAATTTTAAATATATTT
1 TAAAATTTTAAATATATTT
27573271 T
1 T
27573272 TTAAAATTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
19 6 0.17
20 4 0.11
21 11 0.31
22 13 0.36
23 2 0.06
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (19 bp):
TAAAATTTTAAATATATTT
Found at i:27573294 original size:32 final size:33
Alignment explanation
Indices: 27573236--27573309 Score: 98
Period size: 32 Copynumber: 2.2 Consensus size: 33
27573226 ATTTTAAATG
* *
27573236 TTTTATAATATTATTTTAAAATTTTAAATAT-A
1 TTTTTTAAAATTATTTTAAAATTTTAAATATAA
27573268 TTTTTTAAAATTATTTTTAAAA-TTTAAATATAA
1 TTTTTTAAAATTA-TTTTAAAATTTTAAATATAA
27573301 TTTTATTAA
1 TTTT-TTAA
27573310 TATAATAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
32 20 0.54
33 13 0.35
34 4 0.11
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (33 bp):
TTTTTTAAAATTATTTTAAAATTTTAAATATAA
Found at i:27577176 original size:93 final size:93
Alignment explanation
Indices: 27577064--27577235 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
27577054 GCCCATAAGT
* *
27577064 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
27577129 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
27577157 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
27577222 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
27577236 AAATATCCCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:27577231 original size:46 final size:46
Alignment explanation
Indices: 27577056--27577231 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
27577046 TGTAACCCGC
* * *
27577056 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
27577102 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
27577152 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
27577195 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
27577232 TGCCAAATAT
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 65 0.59
47 28 0.25
49 1 0.01
50 6 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:27579624 original size:14 final size:14
Alignment explanation
Indices: 27579605--27579688 Score: 69
Period size: 15 Copynumber: 5.8 Consensus size: 14
27579595 CAAAGATAAC
* *
27579605 AAGAAAACCGAATA
1 AAGAAATCCAAATA
27579619 AAGAAATCCAAGATA
1 AAGAAATCCAA-ATA
* * *
27579634 GAGAAACCCGGAATA
1 AAGAAATCC-AAATA
27579649 AAGAAATCCAAATA
1 AAGAAATCCAAATA
* *
27579663 AAGAGATCCAGGATA
1 AAGAAATCCA-AATA
*
27579678 AAGAAACCCAA
1 AAGAAATCCAA
27579689 GATACGATAC
Statistics
Matches: 54, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
14 22 0.41
15 31 0.57
16 1 0.02
ACGTcount: A:0.57, C:0.17, G:0.17, T:0.10
Consensus pattern (14 bp):
AAGAAATCCAAATA
Found at i:27579692 original size:15 final size:15
Alignment explanation
Indices: 27579616--27579692 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
27579606 AGAAAACCGA
27579616 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
27579631 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
27579645 AATAAAGAAATCCAA-
1 -ATAAAGAAATCCAAG
* *
27579660 ATAAAGAGATCCAGG
1 ATAAAGAAATCCAAG
*
27579675 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
27579690 ATA
1 ATA
27579693 CGATACTATG
Statistics
Matches: 48, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
14 15 0.31
15 31 0.65
16 2 0.04
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:27582659 original size:46 final size:45
Alignment explanation
Indices: 27582592--27582764 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 45
27582582 TGTAACCCGC
*
27582592 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
*
27582638 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * *
27582684 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGACATT-GCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
*
27582729 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
27582765 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 30 0.28
45 7 0.07
46 39 0.36
47 27 0.25
48 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:27582757 original size:91 final size:93
Alignment explanation
Indices: 27582600--27582769 Score: 290
Period size: 91 Copynumber: 1.8 Consensus size: 93
27582590 GCCCATAAGT
* *
27582600 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
27582665 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
27582693 GAACTCGGACTCAACTCAACGAGTTC-GACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
27582756 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
27582770 CAAATATCCG
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 44 0.60
92 4 0.05
93 25 0.34
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:27589544 original size:28 final size:27
Alignment explanation
Indices: 27589481--27589550 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
27589471 ATAGTGAGTC
27589481 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
27589508 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
27589536 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27589551 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:27590035 original size:2 final size:2
Alignment explanation
Indices: 27590028--27590061 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
27590018 CATACTTATG
27590028 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
27590062 CACTTCCAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:27594114 original size:15 final size:17
Alignment explanation
Indices: 27594082--27594114 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
27594072 AGCTTAGAAA
27594082 AAGTTATAATGAGTTAC
1 AAGTTATAATGAGTTAC
27594099 AAGTTA-AATG-GTTAC
1 AAGTTATAATGAGTTAC
27594114 A
1 A
27594115 GAGTAAGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 4 0.25
17 6 0.38
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.33
Consensus pattern (17 bp):
AAGTTATAATGAGTTAC
Found at i:27597559 original size:13 final size:13
Alignment explanation
Indices: 27597536--27597569 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
27597526 AAACATATTA
27597536 TAAACATTTTGTGT
1 TAAA-ATTTTGTGT
27597550 TAAAATTTTGTGT
1 TAAAATTTTGTGT
27597563 TAGAAAT
1 TA-AAAT
27597570 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (13 bp):
TAAAATTTTGTGT
Found at i:27598842 original size:40 final size:40
Alignment explanation
Indices: 27598794--27598959 Score: 289
Period size: 40 Copynumber: 4.2 Consensus size: 40
27598784 GGACTAAGAT
27598794 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
27598834 TCGAAGGCATTTGTGCGAGTTACTATATCCGGGCCAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
27598874 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
27598914 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
27598953 CCGAAGG
1 CCGAAGG
27598960 TACTTGGGTT
Statistics
Matches: 120, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 15 0.12
40 105 0.88
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:27603860 original size:25 final size:26
Alignment explanation
Indices: 27603832--27603885 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
27603822 TTCCTACTAC
27603832 ATGGCTC-AGA-TGAGCATCCTGATAT
1 ATGGCTCGAGAGTGAGCATCCTGAT-T
* *
27603857 ATGGCTCGAGAGTGTGCTTCCTGATT
1 ATGGCTCGAGAGTGAGCATCCTGATT
27603883 ATG
1 ATG
27603886 TGCCTTATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 7 0.28
26 7 0.28
27 11 0.44
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (26 bp):
ATGGCTCGAGAGTGAGCATCCTGATT
Found at i:27617522 original size:5 final size:5
Alignment explanation
Indices: 27617512--27617536 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
27617502 TCAAATTATT
27617512 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
27617537 TTGCATTCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:27618164 original size:20 final size:20
Alignment explanation
Indices: 27618141--27618194 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
27618131 AAATTTTATT
27618141 AAAAATATAAAAATAAG-AAA
1 AAAAATATAAAAAT-AGTAAA
* *
27618161 AAAAATTATAGAAATCGTAAA
1 AAAAA-TATAAAAATAGTAAA
*
27618182 AAAATTATAAAAA
1 AAAAATATAAAAA
27618195 CTACAAGATG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 13 0.46
21 15 0.54
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.20
Consensus pattern (20 bp):
AAAAATATAAAAATAGTAAA
Found at i:27618170 original size:21 final size:20
Alignment explanation
Indices: 27618141--27618194 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
27618131 AAATTTTATT
27618141 AAAAA-TATAAAAATAAGAAA
1 AAAAATTATAAAAAT-AGAAA
* * *
27618161 AAAAATTATAGAAATCGTAA
1 AAAAATTATAAAAATAGAAA
27618181 AAAAATTATAAAAA
1 AAAAATTATAAAAA
27618195 CTACAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 21 0.72
21 8 0.28
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.20
Consensus pattern (20 bp):
AAAAATTATAAAAATAGAAA
Found at i:27618441 original size:21 final size:21
Alignment explanation
Indices: 27618388--27618441 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 21
27618378 AGTACACTAA
* *
27618388 TTTATACTTTTTTTTACAAAT
1 TTTATAATTTTCTTTACAAAT
**
27618409 TTTAT-A-TTTCTTTACATTT
1 TTTATAATTTTCTTTACAAAT
27618428 TTTATAATTTTCTT
1 TTTATAATTTTCTT
27618442 ACGACTTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
19 15 0.56
20 1 0.04
21 11 0.41
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTATAATTTTCTTTACAAAT
Found at i:27618522 original size:11 final size:11
Alignment explanation
Indices: 27618506--27618596 Score: 50
Period size: 11 Copynumber: 8.8 Consensus size: 11
27618496 TTTCTTTTAC
27618506 AATTTTTATAT
1 AATTTTTATAT
*
27618517 AA--TTT-TAC
1 AATTTTTATAT
*
27618525 AATCTTT-TAT
1 AATTTTTATAT
*
27618535 AATTTTTTTAT
1 AATTTTTATAT
*
27618546 GATTTTTATA-
1 AATTTTTATAT
* * *
27618556 ATTTTTTTTCT
1 AATTTTTATAT
27618567 AATTTTTA-AT
1 AATTTTTATAT
* *
27618577 AAATTTTAAAT
1 AATTTTTATAT
*
27618588 ACTTTTTAT
1 AATTTTTAT
27618597 GTTTTTTATT
Statistics
Matches: 59, Mismatches: 16, Indels: 10
0.69 0.19 0.12
Matches are distributed among these distances:
8 4 0.07
9 3 0.05
10 25 0.42
11 27 0.46
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (11 bp):
AATTTTTATAT
Found at i:27618542 original size:20 final size:19
Alignment explanation
Indices: 27618397--27618562 Score: 70
Period size: 19 Copynumber: 8.3 Consensus size: 19
27618387 ATTTATACTT
*
27618397 TTTTTTACAAATTTTAT-A
1 TTTTTTACAATTTTTATAA
*
27618415 TTTCTTTACATTTTTTATAA
1 TTT-TTTACAATTTTTATAA
* *
27618435 TTTTCTTACGA-CTTTATAA
1 TTTT-TTACAATTTTTATAA
** * * *
27618454 AATTTTATAATTTTTTTCTA
1 TTTTTTACAATTTTTAT-AA
* *
27618474 TATTTCTA-TATATTTTATACA
1 T-TTTTTACAAT-TTTTATA-A
27618495 TTTTCTTTTACAATTTTTAT-A
1 --TT-TTTTACAATTTTTATAA
*
27618516 TAATTTTACAATCTTTTATAA
1 T-TTTTTACAAT-TTTTATAA
**
27618537 TTTTTTTATGATTTTTATAA
1 -TTTTTTACAATTTTTATAA
27618557 TTTTTT
1 TTTTTT
27618563 TTCTAATTTT
Statistics
Matches: 108, Mismatches: 24, Indels: 31
0.66 0.15 0.19
Matches are distributed among these distances:
18 7 0.06
19 42 0.39
20 25 0.23
21 19 0.18
22 2 0.02
23 11 0.10
24 2 0.02
ACGTcount: A:0.28, C:0.08, G:0.01, T:0.63
Consensus pattern (19 bp):
TTTTTTACAATTTTTATAA
Found at i:27618551 original size:9 final size:9
Alignment explanation
Indices: 27618500--27618561 Score: 52
Period size: 9 Copynumber: 6.4 Consensus size: 9
27618490 ATACATTTTC
*
27618500 TTTTACAAT
1 TTTTATAAT
*
27618509 TTTTATATAA
1 TTTTATA-AT
*
27618519 TTTTACAAT
1 TTTTATAAT
27618528 CTTTTATAATTT
1 -TTTTATAA--T
*
27618540 TTTTATGAT
1 TTTTATAAT
27618549 TTTTATAAT
1 TTTTATAAT
27618558 TTTT
1 TTTT
27618562 TTTCTAATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
9 20 0.48
10 14 0.33
11 7 0.17
12 1 0.02
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:27618583 original size:61 final size:62
Alignment explanation
Indices: 27618486--27618605 Score: 153
Period size: 61 Copynumber: 2.0 Consensus size: 62
27618476 TTTCTATATA
27618486 TTTTATACATTTTCTTTTACAATTTTTATATAATTTTACAAT-CTTTTATAAT-TTTTTTATGAT
1 TTTTATACATTTTCTTTTACAATTTTTATATAATTTTA-AATACTTTT-T-ATGTTTTTTATGAT
27618549 TTTTATA-ATTTT-TTTT-CTAATTTTTA-ATAAATTTTAAATACTTTTTATGTTTTTTAT
1 TTTTATACATTTTCTTTTAC-AATTTTTATAT-AATTTTAAATACTTTTTATGTTTTTTAT
27618606 TAAAATTTAA
Statistics
Matches: 53, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
59 2 0.04
60 15 0.28
61 24 0.45
62 5 0.09
63 7 0.13
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.64
Consensus pattern (62 bp):
TTTTATACATTTTCTTTTACAATTTTTATATAATTTTAAATACTTTTTATGTTTTTTATGAT
Found at i:27618897 original size:94 final size:91
Alignment explanation
Indices: 27618715--27618905 Score: 224
Period size: 94 Copynumber: 2.1 Consensus size: 91
27618705 TAGGGATAAC
* * * * *
27618715 TCAAGTACCCAATTGAGTGAAAAAAAAAAGAAGCAAGATTTAATTGCCTTTTTGAAAAAGTTTGA
1 TCAAGTAACCAACTGAGTGAAAAAAAAAAGAAACAAGACTTAATTGCCTTTTTGAAAAAATTTGA
*
27618780 GGACCTTTTTAATACATTTTGAAAGT
66 GGACCTTTTTAATACATTGTGAAAGT
* *
27618806 TCAAGTAACCAACTGAGTGCAAAAAAAAAA-AAACAAAGGCTTAATTGCTTTTTTTGAAAAAAAT
1 TCAAGTAACCAACTGAGTG-AAAAAAAAAAGAAAC-AAGACTTAATTGC-CTTTTTG-AAAAAAT
* * *
27618870 TTGATGG-TCTTTTTGATGCATTGTGAAAGT
62 TTGA-GGACCTTTTTAATACATTGTGAAAGT
27618900 TCAAGT
1 TCAAGT
27618906 TCCAAATGAG
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
91 20 0.24
92 21 0.25
93 6 0.07
94 35 0.42
95 2 0.02
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (91 bp):
TCAAGTAACCAACTGAGTGAAAAAAAAAAGAAACAAGACTTAATTGCCTTTTTGAAAAAATTTGA
GGACCTTTTTAATACATTGTGAAAGT
Found at i:27619643 original size:34 final size:32
Alignment explanation
Indices: 27619546--27619662 Score: 146
Period size: 34 Copynumber: 3.5 Consensus size: 32
27619536 GTTTAGAATT
27619546 TTTTTAAAAAATTAATTAAATTAGGTTTTAGGG
1 TTTTTAAAAAATTAATTAAATTAGG-TTTAGGG
* *
27619579 GTTTTAAGTAAATTAATTAAATTAGGGTTTAGGG
1 TTTTTAA-AAAATTAATTAAATTA-GGTTTAGGG
*
27619613 TTTTTAAAAAATTTAATTAAATTAGAGTTTAGAG
1 TTTTTAAAAAA-TTAATTAAATTAG-GTTTAGGG
*
27619647 TTTTTTAAAAA-TAATT
1 TTTTTAAAAAATTAATT
27619663 TTGTGTTTAG
Statistics
Matches: 74, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
32 5 0.07
33 10 0.14
34 57 0.77
35 2 0.03
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.45
Consensus pattern (32 bp):
TTTTTAAAAAATTAATTAAATTAGGTTTAGGG
Done.