Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 108 of 325
Found at i:32045523 original size:24 final size:24
Alignment explanation
Indices: 32045280--32045521 Score: 405
Period size: 24 Copynumber: 10.1 Consensus size: 24
32045270 GCAAAGACCA
*
32045280 TATGGCACTATGTGTGCGGTTTAC
1 TATGGCACTATGTGTGCGATTTAC
32045304 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
32045328 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
32045352 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
32045376 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
32045400 TATGGCACTA-GTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
32045423 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
32045447 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
32045471 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
32045495 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
32045519 TAT
1 TAT
32045522 AGTCACATTC
Statistics
Matches: 210, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
23 22 0.10
24 188 0.90
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:32053424 original size:93 final size:95
Alignment explanation
Indices: 32053279--32053490 Score: 347
Period size: 93 Copynumber: 2.2 Consensus size: 95
32053269 GCAAAGACCA
* *
32053279 TATGGCACTATGTGTGCGGTTTATACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGT
1 TATGGCACTATGTGTGC-G-AT-TACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGT
32053344 GCGATTCACTATGGCACTATGTGTGCGA-TT-C
63 GCGATTCACTATGGCACTATGTGTGCGATTTGC
32053375 TATGGCACTATGTGTGCGATTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG
1 TATGGCACTATGTGTGCGATTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG
*
32053440 ATTTACTATGGCACTATGTGTGCGATTTGC
66 ATTCACTATGGCACTATGTGTGCGATTTGC
*
32053470 TATAGCACTATGTGTGCGATT
1 TATGGCACTATGTGTGCGATT
32053491 TGCTATAGTC
Statistics
Matches: 110, Mismatches: 4, Indels: 5
0.92 0.03 0.04
Matches are distributed among these distances:
93 68 0.62
94 3 0.03
95 22 0.20
96 17 0.15
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.36
Consensus pattern (95 bp):
TATGGCACTATGTGTGCGATTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG
ATTCACTATGGCACTATGTGTGCGATTTGC
Found at i:32053498 original size:24 final size:24
Alignment explanation
Indices: 32053279--32053496 Score: 343
Period size: 24 Copynumber: 9.1 Consensus size: 24
32053269 GCAAAGACCA
*
32053279 TATGGCACTATGTGTGCGGTTTATAC
1 TATGGCACTATGTGTGC-GATT-TAC
32053305 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
32053329 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
32053353 TATGGCACTATGTGTGCGA-TT-C
1 TATGGCACTATGTGTGCGATTTAC
32053375 TATGGCACTATGTGTGCGA-TTAC
1 TATGGCACTATGTGTGCGATTTAC
*
32053398 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
32053422 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
32053446 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
32053470 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
32053494 TAT
1 TAT
32053497 AGTCACATTC
Statistics
Matches: 183, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
22 22 0.12
23 21 0.11
24 120 0.66
25 3 0.02
26 17 0.09
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.37
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:32060287 original size:27 final size:28
Alignment explanation
Indices: 32060249--32060318 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
32060239 ACAGTGAGTC
32060249 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
32060276 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
32060304 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32060319 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32062331 original size:25 final size:25
Alignment explanation
Indices: 32062277--32062334 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
32062267 CTTCAAGCTT
*
32062277 TTCTATCTTCTTTTCGAGTTCCAAA
1 TTCTTTCTTCTTTTCGAGTTCCAAA
32062302 TTCTTTCTTCTTTTCGAGTTCCAAA
1 TTCTTTCTTCTTTTCGAGTTCCAAA
32062327 TTCTTTCT
1 TTCTTTCT
32062335 CTTAAATTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.16, C:0.24, G:0.07, T:0.53
Consensus pattern (25 bp):
TTCTTTCTTCTTTTCGAGTTCCAAA
Found at i:32077689 original size:13 final size:13
Alignment explanation
Indices: 32077671--32077695 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32077661 TTTTTTGGAC
32077671 ATGCAAGAAATTG
1 ATGCAAGAAATTG
32077684 ATGCAAGAAATT
1 ATGCAAGAAATT
32077696 TGACTTCACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.20, T:0.24
Consensus pattern (13 bp):
ATGCAAGAAATTG
Found at i:32079476 original size:42 final size:42
Alignment explanation
Indices: 32079415--32079512 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
32079405 ATGTCTCATA
*
32079415 TTGCATTTAGAGACGCAAGTGTAGAGGTCCGTTTACTTTTCG
1 TTGCATTTAGAGGCGCAAGTGTAGAGGTCCGTTTACTTTTCG
* * * *
32079457 TTGCATTTAGAGGCTCAAGTGTGGATGTCTGTTTACTTTTCG
1 TTGCATTTAGAGGCGCAAGTGTAGAGGTCCGTTTACTTTTCG
*
32079499 TTGCATTTAAAGGC
1 TTGCATTTAGAGGC
32079513 CCAGGTGGGG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.20, C:0.15, G:0.26, T:0.39
Consensus pattern (42 bp):
TTGCATTTAGAGGCGCAAGTGTAGAGGTCCGTTTACTTTTCG
Found at i:32079576 original size:42 final size:41
Alignment explanation
Indices: 32079445--32079589 Score: 164
Period size: 42 Copynumber: 3.5 Consensus size: 41
32079435 GTAGAGGTCC
* * * * *
32079445 GTTTACTTTTCGTTGCATTTAGAGGCTCAAGTGTGGATGTCT
1 GTTTACTTTTCATTGCATTTAAAGGCCCAGGTGTGGA-GTTT
* * *
32079487 GTTTACTTTTCGTTGCATTTAAAGGCCCAGGTGGGGATTTT
1 GTTTACTTTTCATTGCATTTAAAGGCCCAGGTGTGGAGTTT
* *
32079528 CGTTTACTTTGCATTGCATTTAAAGGCCCAGGTATGGAGGTTT
1 -GTTTACTTTTCATTGCATTTAAAGGCCCAGGTGTGGA-GTTT
*
32079571 ATTTACTTTTCATTGCATT
1 GTTTACTTTTCATTGCATT
32079590 ATATGAAGGC
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
41 2 0.02
42 83 0.94
43 3 0.03
ACGTcount: A:0.19, C:0.15, G:0.23, T:0.43
Consensus pattern (41 bp):
GTTTACTTTTCATTGCATTTAAAGGCCCAGGTGTGGAGTTT
Found at i:32080547 original size:144 final size:141
Alignment explanation
Indices: 32080394--32080697 Score: 407
Period size: 145 Copynumber: 2.1 Consensus size: 141
32080384 GGAAAAAATT
*
32080394 TGATTTTTTTTAAGGAGAATTTAGATTTTAAAAATAAAAATATGTTTCTTTAGTCATTTTAAAGG
1 TGATTTTTTTTAAAGAGAATTTAGATTTTAAAAATAAAAATAT-TTTCTTTAGTCATTTTAAAGG
* * ** *
32080459 AAAGCTTAAAATTTTAAATCAAAGTTTTGATTTTTTTTCAACTA-TTTCAAAATAAAAGTTTTGA
65 AAA-ATTAAAATTTAAAAAAAAAGTTTTGA-TCTTTTTCAACTACTTT-AAAAT-AAAGTTTTGA
32080523 TCTTTAAGAAAAATAG
126 TCTTTAAGAAAAATAG
* * * *
32080539 T-ATTTTTTTTTAAAGAGAGTTTAGATTTTTAAAATAAAAATCTTTTTTTTAGTCATTTTAAAGG
1 TGA-TTTTTTTTAAAGAGAATTTAGATTTTAAAAATAAAAATATTTTCTTTAGTCATTTTAAAGG
** *
32080603 AAAATTTTAATTTAAAAAAAAAGTTTTGATCTTTTTCAACTACTTTGAAATAAAGTTTTGATCTT
65 AAAATTAAAATTTAAAAAAAAAGTTTTGATCTTTTTCAACTACTTTAAAATAAAGTTTTGATCTT
32080668 TAAGAAAAATAG
130 TAAGAAAAATAG
*
32080680 TGA-TTTTTTTAAAAAGAA
1 TGATTTTTTTTAAAGAGAA
32080698 AACTTTGATT
Statistics
Matches: 141, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
140 13 0.09
141 27 0.19
142 17 0.12
143 23 0.16
144 24 0.17
145 37 0.26
ACGTcount: A:0.40, C:0.05, G:0.11, T:0.44
Consensus pattern (141 bp):
TGATTTTTTTTAAAGAGAATTTAGATTTTAAAAATAAAAATATTTTCTTTAGTCATTTTAAAGGA
AAATTAAAATTTAAAAAAAAAGTTTTGATCTTTTTCAACTACTTTAAAATAAAGTTTTGATCTTT
AAGAAAAATAG
Found at i:32080708 original size:142 final size:145
Alignment explanation
Indices: 32080413--32080723 Score: 393
Period size: 143 Copynumber: 2.2 Consensus size: 145
32080403 TTAAGGAGAA
* * * *
32080413 TTTAGATTTTAAAAATAAAAATATGTTTCTTTAGTCATTTTAAAGGAAAGCTTAAAATTTTAAAT
1 TTTAGATTTTAAAAATAAAAATCTGTTTCTTTAGTCATTTTAAAGGAAAGATTAAAATTTAAAAA
* *
32080478 CAAAGTTTTGATTTTTTTTCAACTATTTCAAAATAAAAGTTTTGATCTTTAAGAAAAATAGTATT
66 AAAAGTTTTGATTCTTTTTCAACTATTTCAAAATAAAAGTTTTGATCTTTAAGAAAAATAGTATT
** * *
32080543 TTTTTTTAAAGAGAG
131 TTTTTAAAAAGAAAC
* * **
32080558 TTTAGATTTTTAAAATAAAAATCT-TTTTTTTAGTCATTTTAAAGGAAA-ATTTTAATTTAAAAA
1 TTTAGATTTTAAAAATAAAAATCTGTTTCTTTAGTCATTTTAAAGGAAAGATTAAAATTTAAAAA
*
32080621 AAAAGTTTTGA-TCTTTTTCAACTACTTT-GAAAT-AAAGTTTTGATCTTTAAGAAAAATAGTGA
66 AAAAGTTTTGATTCTTTTTCAACTA-TTTCAAAATAAAAGTTTTGATCTTTAAGAAAAATAGT-A
32080683 TTTTTTTAAAAAGAAAAC
129 TTTTTTTAAAAAG-AAAC
32080701 TTT-GATTTTGCAAAAA-AAAAATC
1 TTTAGATTTT--AAAAATAAAAATC
32080724 GGGTCACTGT
Statistics
Matches: 145, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
141 27 0.19
142 34 0.23
143 35 0.24
144 27 0.19
145 22 0.15
ACGTcount: A:0.41, C:0.06, G:0.10, T:0.43
Consensus pattern (145 bp):
TTTAGATTTTAAAAATAAAAATCTGTTTCTTTAGTCATTTTAAAGGAAAGATTAAAATTTAAAAA
AAAAGTTTTGATTCTTTTTCAACTATTTCAAAATAAAAGTTTTGATCTTTAAGAAAAATAGTATT
TTTTTAAAAAGAAAC
Found at i:32081597 original size:27 final size:26
Alignment explanation
Indices: 32081533--32081599 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 26
32081523 TTAGTTAAAT
*
32081533 AGGTTTTACAATTTAATGAAACCATA
1 AGGTTTTACATTTTAATGAAACCATA
32081559 AGGTTTTTACATTTTAATGAAACCATA
1 AGG-TTTTACATTTTAATGAAACCATA
32081586 AGGTTCTTACATTT
1 AGGTT-TTACATTT
32081600 GGATTTAGAT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
26 5 0.13
27 33 0.87
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (26 bp):
AGGTTTTACATTTTAATGAAACCATA
Found at i:32082001 original size:3 final size:3
Alignment explanation
Indices: 32081993--32082030 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
32081983 CTTTTACAAA
32081993 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
32082031 AAGATCGAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:32085955 original size:27 final size:27
Alignment explanation
Indices: 32085925--32086081 Score: 179
Period size: 27 Copynumber: 5.8 Consensus size: 27
32085915 ATTACCAAAG
* * *
32085925 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
32085952 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
32085979 TACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
32086006 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
32086033 TGCCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
32086060 TACCCTCGATCTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
32086082 AGAAATACCC
Statistics
Matches: 110, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:32085972 original size:54 final size:54
Alignment explanation
Indices: 32085898--32086027 Score: 143
Period size: 54 Copynumber: 2.4 Consensus size: 54
32085888 ATTATTGAAA
* * *
32085898 TACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGACTTATAGAATTACCAAAGTACCCCCGATTTACAAAATTACCGTTT
* **** * **
32085952 TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCGACTTATAGAATTACCAAAGTACCCCCGATTTACAAAATTACCGTTT
* *
32086006 TACCGTCGATTTATAGAATTAC
1 TACCCTCGACTTATAGAATTAC
32086028 TATTTTGCCC
Statistics
Matches: 62, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (54 bp):
TACCCTCGACTTATAGAATTACCAAAGTACCCCCGATTTACAAAATTACCGTTT
Found at i:32086026 original size:81 final size:81
Alignment explanation
Indices: 32085931--32086080 Score: 210
Period size: 81 Copynumber: 1.9 Consensus size: 81
32085921 AAAGTACCCC
* * * *
32085931 CGATTTACATAATTACCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAA
1 CGATTTACAGAATTACCATTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATCTACAAA
32085996 ATTATTGTTTTACCGT
66 ATTATTGTTTTACCGT
* * * * * *
32086012 CGATTTATAGAATTACTATTTTGCCCTTGATTTACAGAATTACTATTTTACCCTCGATCTACAAA
1 CGATTTACAGAATTACCATTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATCTACAAA
32086077 ATTA
66 ATTA
32086081 CAGAAATACC
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 59 1.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.40
Consensus pattern (81 bp):
CGATTTACAGAATTACCATTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATCTACAAA
ATTATTGTTTTACCGT
Found at i:32086104 original size:27 final size:27
Alignment explanation
Indices: 32086074--32086201 Score: 179
Period size: 27 Copynumber: 4.7 Consensus size: 27
32086064 CTCGATCTAC
*
32086074 AAAATTA-CAGAAATA-CCCTCAATTTGT
1 AAAATTACCA-AAATACCCCT-AGTTTGT
32086101 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
32086128 AAAATTACCAAAATACCCCTAGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
32086155 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
32086182 GAAATTACCAAAATACCCCT
1 AAAATTACCAAAATACCCCT
32086202 GATTTACAAA
Statistics
Matches: 92, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
27 86 0.93
28 6 0.07
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:32086277 original size:27 final size:27
Alignment explanation
Indices: 32086071--32086289 Score: 127
Period size: 27 Copynumber: 8.0 Consensus size: 27
32086061 ACCCTCGATC
* ***
32086071 TACAAAATTACAGAAATACCCTCAATT
1 TACAAAATTACCGAAATACCCTTGGTT
** * * *
32086098 TGTAAAATTACCAAAATACCCCTAGTT
1 TACAAAATTACCGAAATACCCTTGGTT
** * * *
32086125 TGTAAAATTACCAAAATACCCCTAGTT
1 TACAAAATTACCGAAATACCCTTGGTT
* *
32086152 TATAAAATTACCAAAATACCAC-TGGTT
1 TACAAAATTACCGAAATACC-CTTGGTT
*** * * *
32086179 TGTGAAATTACCAAAATACCCCTGATT
1 TACAAAATTACCGAAATACCCTTGGTT
* * *
32086206 TACAAAGTTACAGAAATACCCTTGACTT
1 TACAAAATTACCGAAATACCCTTG-GTT
** *
32086234 T-CTAAAAATTATAGAAATACCATTGGTT
1 TAC--AAAATTACCGAAATACCCTTGGTT
*
32086262 TACAAAATTACTGAAATACCCTTGGTT
1 TACAAAATTACCGAAATACCCTTGGTT
32086289 T
1 T
32086290 GTAGATTTAC
Statistics
Matches: 159, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 132 0.83
28 7 0.04
29 19 0.12
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TACAAAATTACCGAAATACCCTTGGTT
Found at i:32086407 original size:27 final size:27
Alignment explanation
Indices: 32086330--32086407 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
32086320 AAATGACTAA
* *
32086330 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
32086357 AA-AGCCCCTGTAAGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
32086384 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
32086408 GAATATGCCT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:32087598 original size:24 final size:24
Alignment explanation
Indices: 32087566--32087612 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
32087556 TTATAATATG
* *
32087566 AAAATGACCATTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
32087590 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
32087613 GTTTATACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.26
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:32087663 original size:9 final size:9
Alignment explanation
Indices: 32087651--32087707 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
32087641 TTTGATAAAC
32087651 ATGATATGT
1 ATGATATGT
*
32087660 ATGATATGCAC
1 ATGATATG--T
*
32087671 ATGACATGT
1 ATGATATGT
*
32087680 ATGATATGCAC
1 ATGATATG--T
32087691 ATGATATGT
1 ATGATATGT
32087700 ATGATATG
1 ATGATATG
32087708 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:32087674 original size:20 final size:20
Alignment explanation
Indices: 32087649--32087719 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
32087639 ATTTTGATAA
32087649 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
32087669 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
32087689 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
32087709 ACATGAGATGT
1 ACATGATATGT
32087720 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:32087696 original size:11 final size:11
Alignment explanation
Indices: 32087660--32087714 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
32087650 CATGATATGT
32087660 ATGATATGCAC
1 ATGATATGCAC
* *
32087671 ATGACATG--T
1 ATGATATGCAC
32087680 ATGATATGCAC
1 ATGATATGCAC
*
32087691 ATGATATG--T
1 ATGATATGCAC
32087700 ATGATATGCAC
1 ATGATATGCAC
32087711 ATGA
1 ATGA
32087715 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:32087797 original size:23 final size:24
Alignment explanation
Indices: 32087766--32087929 Score: 248
Period size: 23 Copynumber: 7.0 Consensus size: 24
32087756 AGGAAGTGCA
*
32087766 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
32087790 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
32087813 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
32087837 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
32087860 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
32087883 AAAAGGGCTT-TGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATT
*
32087906 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
32087930 ATGATAAAGC
Statistics
Matches: 131, Mismatches: 4, Indels: 9
0.91 0.03 0.06
Matches are distributed among these distances:
23 86 0.66
24 38 0.29
25 7 0.05
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:32087835 original size:47 final size:47
Alignment explanation
Indices: 32087766--32087929 Score: 253
Period size: 47 Copynumber: 3.5 Consensus size: 47
32087756 AGGAAGTGCA
*
32087766 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
32087813 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
32087860 AAAAGGGCTT-TGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
*
32087906 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
32087930 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 3, Indels: 7
0.92 0.03 0.06
Matches are distributed among these distances:
46 31 0.28
47 71 0.65
48 8 0.07
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:32087880 original size:70 final size:69
Alignment explanation
Indices: 32087767--32087908 Score: 241
Period size: 70 Copynumber: 2.0 Consensus size: 69
32087757 GGAAGTGCAA
*
32087767 AAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAG
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTT-TGCCCCAG
32087832 TTATT
65 TTATT
32087837 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTATTAAAAGGGCTTTGCCCCAG
1 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAG
*
32087901 TTGTT
65 TTATT
32087906 AAA
1 AAA
32087909 AGAGGCTAGG
Statistics
Matches: 69, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
69 15 0.22
70 45 0.65
71 9 0.13
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30
Consensus pattern (69 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAGT
TATT
Found at i:32091088 original size:25 final size:25
Alignment explanation
Indices: 32091033--32091099 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
32091023 TTTTATAATT
* *
32091033 TATAATTTATTCAATATTATTAAAAA
1 TATAATTTAAT-ATTATTATTAAAAA
* **
32091059 AATAATTTAATATTATTATTTTAAA
1 TATAATTTAATATTATTATTAAAAA
32091084 TATAATTTACATATTA
1 TATAATTTA-ATATTA
32091100 AATATTCTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 19 0.56
26 15 0.44
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (25 bp):
TATAATTTAATATTATTATTAAAAA
Found at i:32094811 original size:93 final size:93
Alignment explanation
Indices: 32094699--32094870 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
32094689 GCCCATAAGT
* *
32094699 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32094764 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
32094792 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32094857 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
32094871 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32094866 original size:46 final size:46
Alignment explanation
Indices: 32094691--32094866 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
32094681 TGTAACCCGC
* * *
32094691 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
32094737 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
32094787 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
32094830 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32094867 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:32097288 original size:30 final size:30
Alignment explanation
Indices: 32097244--32097332 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
32097234 CAAAGATAAC
32097244 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
32097273 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
32097303 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
32097333 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:32097292 original size:15 final size:15
Alignment explanation
Indices: 32097244--32097323 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
32097234 CAAAGATAAC
*
32097244 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
32097258 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
32097273 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
32097288 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
32097303 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
32097318 AAGAAA
1 AAGAAA
32097324 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:32097332 original size:15 final size:15
Alignment explanation
Indices: 32097255--32097332 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
32097245 AGAAAACCGA
32097255 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
32097270 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
32097284 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
32097299 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
32097315 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
32097330 ATA
1 ATA
32097333 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:32100393 original size:93 final size:93
Alignment explanation
Indices: 32100281--32100452 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
32100271 GCCCATAAGT
* *
32100281 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32100346 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
32100374 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32100439 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
32100453 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32100448 original size:46 final size:46
Alignment explanation
Indices: 32100273--32100448 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
32100263 TGTAACCCGC
* * *
32100273 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
32100319 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
32100369 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
32100412 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32100449 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:32104906 original size:27 final size:27
Alignment explanation
Indices: 32104868--32105181 Score: 420
Period size: 27 Copynumber: 11.8 Consensus size: 27
32104858 GTGTACTTGA
*
32104868 ACCCTCATGTGATAAAATGATGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
*
32104895 ACCCTCATGTGATAAAATGACGACTTT
1 ACCCTCATGTGATAAAATGACGATTTT
32104922 ACCCTCATGTGATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
*
32104949 ACCCTCATGTGATAAAATGATGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
*
32104976 ACCCTCATGTAATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
32105003 ACCCTCATGTGATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
32105030 A-CCT-A--TGATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* *
32105053 ACCTTCATGTGATGAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* * * * *
32105080 TCCCTTATATAATGAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
*
32105107 ACCCTTATGTGATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* * **
32105134 GCCCTTATGTGATAAAATGATAATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* * * *
32105161 GCCTTTATGTGATCAAATGAC
1 ACCCTCATGTGATAAAATGAC
32105182 CGAAATACCG
Statistics
Matches: 259, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
23 19 0.07
24 2 0.01
25 2 0.01
26 3 0.01
27 233 0.90
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (27 bp):
ACCCTCATGTGATAAAATGACGATTTT
Found at i:32105205 original size:27 final size:27
Alignment explanation
Indices: 32105175--32105288 Score: 122
Period size: 27 Copynumber: 4.2 Consensus size: 27
32105165 TTATGTGATC
*
32105175 AAATGACCGAAATA-CCGTCATAGGGTA
1 AAATGACCGAAATACCCCT-ATAGGGTA
* *
32105202 AAATTACAGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCCTATAGGGTA
* * *
32105229 GAATAACCGAAATACCCCTGTAGGGTA
1 AAATGACCGAAATACCCCTATAGGGTA
* * * *
32105256 AAATGACTGTAATACCCCGATAAGGTA
1 AAATGACCGAAATACCCCTATAGGGTA
32105283 AAATGA
1 AAATGA
32105289 TAAATTTGTT
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
27 69 0.96
28 3 0.04
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.20
Consensus pattern (27 bp):
AAATGACCGAAATACCCCTATAGGGTA
Found at i:32105367 original size:23 final size:23
Alignment explanation
Indices: 32105324--32105373 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
32105314 CTGTATTTGA
32105324 GCATGCCATGTTATATGTATGTT
1 GCATGCCATGTTATATGTATGTT
32105347 GCAT-CCATGTATGATAT-TATGTT
1 GCATGCCATGT-T-ATATGTATGTT
32105370 GCAT
1 GCAT
32105374 TGCATAGGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 15 0.60
24 4 0.16
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.42
Consensus pattern (23 bp):
GCATGCCATGTTATATGTATGTT
Found at i:32116164 original size:12 final size:11
Alignment explanation
Indices: 32116147--32116200 Score: 56
Period size: 12 Copynumber: 4.7 Consensus size: 11
32116137 TATAATTTTA
32116147 TATTAAAATTAT
1 TATTAAAA-TAT
32116159 TATT-AAATAT
1 TATTAAAATAT
*
32116169 TATTAATAATGT
1 TATTAA-AATAT
*
32116181 TATTAATAATGT
1 TATTAA-AATAT
32116193 TATTAAAA
1 TATTAAAA
32116201 ATATATTATT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
10 7 0.18
11 6 0.15
12 26 0.67
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (11 bp):
TATTAAAATAT
Found at i:32116321 original size:25 final size:26
Alignment explanation
Indices: 32116272--32116324 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
32116262 ATTTTTATTT
*
32116272 TTATTAAAATATATTTAACAATAATC
1 TTATTAAAATATATATAACAATAATC
*
32116298 TTATTAAAATTTA-ATAACAATAATC
1 TTATTAAAATATATATAACAATAATC
32116323 TT
1 TT
32116325 CTACCAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (26 bp):
TTATTAAAATATATATAACAATAATC
Found at i:32116454 original size:49 final size:51
Alignment explanation
Indices: 32116393--32116491 Score: 157
Period size: 49 Copynumber: 2.0 Consensus size: 51
32116383 ATTACAACAT
32116393 CATTCCATTCAACCAAACACAAGAATT-CT-ATTACAGCTCTATTCCATTC
1 CATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTATTCCATTC
***
32116442 CATTCCATTCAACCAAACAGTTGAATTACTGATTACAGCTCTATTCCATT
1 CATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTATTCCATT
32116492 ACAGCTCTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 24 0.53
50 2 0.04
51 19 0.42
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.32
Consensus pattern (51 bp):
CATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTATTCCATTC
Found at i:32116494 original size:16 final size:16
Alignment explanation
Indices: 32116473--32116527 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
32116463 TGAATTACTG
*
32116473 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCA
*
32116489 ATTACAGCTCTATTGA
1 ATTACAGCTCTATTCA
* * *
32116505 ATTACAGCCCTACTCT
1 ATTACAGCTCTATTCA
32116521 ATTACAG
1 ATTACAG
32116528 TGAACCAAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.35
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:32117093 original size:18 final size:18
Alignment explanation
Indices: 32117047--32117096 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
32117037 TCAGCAACTT
*
32117047 TTTCTTCTTCAGCAACAAC
1 TTTC-TCTTCTGCAACAAC
* *
32117066 TTTGTCTTCTGCAAGAAC
1 TTTCTCTTCTGCAACAAC
32117084 TTTCTCTTCTGCA
1 TTTCTCTTCTGCA
32117097 GTAGCAACTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
18 24 0.89
19 3 0.11
ACGTcount: A:0.20, C:0.28, G:0.10, T:0.42
Consensus pattern (18 bp):
TTTCTCTTCTGCAACAAC
Found at i:32120871 original size:43 final size:43
Alignment explanation
Indices: 32120552--32120858 Score: 490
Period size: 43 Copynumber: 7.1 Consensus size: 43
32120542 GTTAAATCTC
*
32120552 GCAGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * *
32120595 GCTGGCTTCGTGCCTGTGATGTGTATTCGGGCCTTCATGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
32120638 GCAGGCTTCAG-GCCGGTGATGTATATTCGGGCCTTCGTCCCTA
1 GCAGGCTTC-GTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
32120681 GCAGGCTTCGTGCCGGTGATATATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
32120724 GCAGGCTTCGTGCTGGTGATGTGTATTCAGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
32120767 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
**
32120810 GCAGGCTTTATGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
32120853 GCAGGC
1 GCAGGC
32120859 GTAATGCCGG
Statistics
Matches: 243, Mismatches: 19, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
42 1 0.00
43 241 0.99
44 1 0.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:32126050 original size:31 final size:31
Alignment explanation
Indices: 32126012--32126075 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
32126002 GCCTTTTCAT
32126012 TTTTCATATTTCATAACACTGGGCCGAAGCC
1 TTTTCATATTTCATAACACTGGGCCGAAGCC
**
32126043 TTTTCATATTTCATATTACTGGGCCGAAGCC
1 TTTTCATATTTCATAACACTGGGCCGAAGCC
32126074 TT
1 TT
32126076 CACTGTAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTTCATATTTCATAACACTGGGCCGAAGCC
Found at i:32126340 original size:25 final size:26
Alignment explanation
Indices: 32126297--32126366 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
32126287 CTCTTTTAAT
32126297 AACTGGGGC-AAAGCCCTTTT-GACA
1 AACTGGGGCAAAAGCCCTTTTCGACA
**
32126321 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAAGCCCTTTTCGACA
*
32126347 AATTGGGGCAAAAGCCCTTT
1 AACTGGGGCAAAAGCCCTTT
32126367 GTGCACTTCC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 9 0.22
25 11 0.27
26 21 0.51
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.23
Consensus pattern (26 bp):
AACTGGGGCAAAAGCCCTTTTCGACA
Found at i:32126520 original size:24 final size:24
Alignment explanation
Indices: 32126478--32126524 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
32126468 ATAATTAAAC
* * *
32126478 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAATAGTCATTTTA
32126502 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
32126525 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (24 bp):
CCTAGGGGCAAAATAGTCATTTTA
Found at i:32131934 original size:27 final size:26
Alignment explanation
Indices: 32131904--32131995 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 26
32131894 ATTACCAAAG
*
32131904 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTAAAGAATTA-TGTTT
* *
32131931 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTAAAGAATTA-TGTTT
*
32131958 TACCCTCGATTTAAAAAATTATCGTTT
1 TACCCTCGATTTAAAGAATTAT-GTTT
*
32131985 TACCCTTGATT
1 TACCCTCGATT
32131996 GTGAAATGAC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.02
27 56 0.98
ACGTcount: A:0.27, C:0.18, G:0.10, T:0.45
Consensus pattern (26 bp):
TACCCTCGATTTAAAGAATTATGTTT
Found at i:32132085 original size:54 final size:54
Alignment explanation
Indices: 32132027--32132428 Score: 463
Period size: 54 Copynumber: 7.4 Consensus size: 54
32132017 TATAGGGTAG
* * ** * * **
32132027 AATTACCAAAATACCCCT-AGTTTATAAAATTACCAAAATACCC-CTAGTTTGTGA
1 AATTACCAAAATACCCCTGA-TTTGTGAAATTACTGAAATACCCTCGA-CTTGCAA
* *
32132081 AATTACAAAAATACCCCTGATTTGTGAAATTACTGAAATACGCTCGACTTGCAA
1 AATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACTTGCAA
* *
32132135 AATTACAAAAATACCCCTGATTTGTGAAATTACTGAAATACGCTCGACTTGCAA
1 AATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACTTGCAA
*
32132189 AATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACTTGCAA
* * * * * ** *
32132243 AATTACCAAAATACCCTTGGTTTATAAAATTACTAAAATA-CCTCTGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTC-GACTTGCAA
*
32132297 AATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTC-AGTTTGCAA
1 AATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGA-CTTGCAA
** * *
32132351 AATTACTGAAATA-CCCTCGATTTGTAAAATTACTGAAATACCCTCGACTTGTAAA
1 AATTACCAAAATACCCCT-GATTTGTGAAATTACTGAAATACCCTCGACTTG-CAA
* *
32132406 AATTACCAAAGTACCCCCGATTT
1 AATTACCAAAATACCCCTGATTT
32132429 TTAGAATTAC
Statistics
Matches: 303, Mismatches: 36, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
53 8 0.03
54 267 0.88
55 25 0.08
56 3 0.01
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACTTGCAA
Found at i:32132394 original size:27 final size:27
Alignment explanation
Indices: 32132027--32132438 Score: 336
Period size: 27 Copynumber: 15.2 Consensus size: 27
32132017 TATAGGGTAG
* * *
32132027 AATTACCAAAATACCC-CTAGTTTATAA
1 AATTACTAAAATACCCTCGA-TTTGTAA
* * *
32132054 AATTACCAAAATACCC-CTAGTTTGTGA
1 AATTACTAAAATACCCTCGA-TTTGTAA
* *
32132081 AATTACAAAAATACCC-CTGATTTGTGA
1 AATTACTAAAATACCCTC-GATTTGTAA
* * * *
32132108 AATTACTGAAATACGCTCGACTTGCAA
1 AATTACTAAAATACCCTCGATTTGTAA
* *
32132135 AATTACAAAAATACCC-CTGATTTGTGA
1 AATTACTAAAATACCCTC-GATTTGTAA
* * * *
32132162 AATTACTGAAATACGCTCGACTTGCAA
1 AATTACTAAAATACCCTCGATTTGTAA
* *
32132189 AATTACCAAAATACCC-CTGATTTGTGA
1 AATTACTAAAATACCCTC-GATTTGTAA
* *
32132216 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACTAAAATACCCTCGATTTGTAA
* * * *
32132243 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACTAAAATACCCTCGATTTGTAA
*
32132270 AATTACTAAAATA-CCTCTGGTTTGTAA
1 AATTACTAAAATACCCTC-GATTTGTAA
* *
32132297 AATTACCAAAATACCC-CTGATTTGTGA
1 AATTACTAAAATACCCTC-GATTTGTAA
* *
32132324 AATTACTGAAATACCCTC-AGTTTGCAA
1 AATTACTAAAATACCCTCGA-TTTGTAA
*
32132351 AATTACTGAAATACCCTCGATTTGTAA
1 AATTACTAAAATACCCTCGATTTGTAA
* *
32132378 AATTACTGAAATACCCTCGACTTGTAAA
1 AATTACTAAAATACCCTCGATTTGT-AA
* * * * *
32132406 AATTACCAAAGTACCCCCGATTTTTAG
1 AATTACTAAAATACCCTCGATTTGTAA
32132433 AATTAC
1 AATTAC
32132439 CATTTTACCC
Statistics
Matches: 316, Mismatches: 57, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
26 6 0.02
27 281 0.89
28 29 0.09
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
AATTACTAAAATACCCTCGATTTGTAA
Found at i:32132612 original size:54 final size:54
Alignment explanation
Indices: 32132468--32132627 Score: 248
Period size: 54 Copynumber: 3.0 Consensus size: 54
32132458 AAAATTATTG
* *
32132468 AAATACCCCTATAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACTA
1 AAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACTA
* *
32132522 AAATACCCTTATAGGATAGAATTACCGAAATACCCTTGTAGGGTAGAATTACTA
1 AAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACTA
* * * *
32132576 AAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGTAAAATTAC
1 AAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTAC
32132628 AATTTTGCCC
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 96 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (54 bp):
AAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACTA
Found at i:32132619 original size:27 final size:27
Alignment explanation
Indices: 32132467--32132627 Score: 196
Period size: 27 Copynumber: 6.0 Consensus size: 27
32132457 CAAAATTATT
* *
32132467 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
32132494 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
32132521 AAAATACCCTTATAGGATAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
32132548 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
32132575 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
32132602 GAGATACCCTTGTGGGGTAAAATTAC
1 GAAATACCCTTGTAGGGTAGAATTAC
32132628 AATTTTGCCC
Statistics
Matches: 117, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:32132909 original size:24 final size:25
Alignment explanation
Indices: 32132833--32132902 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
32132823 AGGAAGTGCT
* *
32132833 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
32132858 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
32132883 AAAAGGGCTTTACCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
32132903 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:32132915 original size:24 final size:24
Alignment explanation
Indices: 32132832--32132915 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
32132822 GAGGAAGTGC
*
32132832 TAAAAGGGCTTTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
32132857 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
* *
32132881 CAAAAAGGGCTTTACCCCAG-TTAT
1 -TAAAAGGGCTTTGCCCCAGTTTAT
32132905 TAAAAGAGGCT
1 TAAAAG-GGCT
32132916 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.10
24 8 0.15
25 39 0.75
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:32132926 original size:50 final size:50
Alignment explanation
Indices: 32132833--32132927 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
32132823 AGGAAGTGCT
* **
32132833 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTACCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
**
32132883 AAAAGGGCTTTACCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTACCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
32132928 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.25
Consensus pattern (50 bp):
AAAAGGGCTTTACCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:32135517 original size:40 final size:40
Alignment explanation
Indices: 32135450--32135626 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
32135440 ACCCAAGTAT
*
32135450 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
32135489 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
32135529 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
32135569 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
32135609 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
32135627 TTATCATCGA
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 104 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:32144317 original size:24 final size:24
Alignment explanation
Indices: 32144285--32144347 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
32144275 AATCTCAAAT
32144285 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
32144309 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
32144333 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
32144348 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:32152150 original size:24 final size:24
Alignment explanation
Indices: 32152118--32152204 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
32152108 AATCTCAAAT
32152118 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
32152142 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
32152166 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
32152190 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
32152205 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:32152170 original size:48 final size:48
Alignment explanation
Indices: 32152118--32152226 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
32152108 AATCTCAAAT
** *
32152118 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
32152166 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
32152214 GCACTATGTGTGC
1 GCACTATGTGTGC
32152227 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:32152217 original size:24 final size:24
Alignment explanation
Indices: 32152118--32152226 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
32152108 AATCTCAAAT
*
32152118 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
32152142 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
32152166 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
32152190 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
32152214 GCACTATGTGTGC
1 GCACTATGTGTGC
32152227 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:32157483 original size:86 final size:87
Alignment explanation
Indices: 32157337--32157507 Score: 204
Period size: 86 Copynumber: 2.0 Consensus size: 87
32157327 AAACGACTAT
* * * **
32157337 AATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAGTATCGATACCTCTGTCCCAGACAGGG
1 AATGCCAACGTCCCAGACATGGTCTTACACGTAATTCAGAATCGATACCTCTGTCCCAGACACAG
*
32157402 TCTTATACGA-AA-TCAGATAC
66 TCTTACACGATAATTCAGATAC
* * * * *
32157422 AATGCCGATGTCCGAGACATGGTCTTACACGTAAATTTCA-AATCGATGCCTGTGTCCCAGACAC
1 AATGCCAACGTCCCAGACATGGTCTTACACGT-AA-TTCAGAATCGATACCTCTGTCCCAGACAC
32157486 AGTCTTACACGATAATTCAGAT
64 AGTCTTACACGATAATTCAGAT
32157508 TAATACCAAC
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
85 27 0.38
86 32 0.45
87 6 0.08
88 6 0.08
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (87 bp):
AATGCCAACGTCCCAGACATGGTCTTACACGTAATTCAGAATCGATACCTCTGTCCCAGACACAG
TCTTACACGATAATTCAGATAC
Found at i:32157484 original size:44 final size:43
Alignment explanation
Indices: 32157346--32157504 Score: 130
Period size: 42 Copynumber: 3.7 Consensus size: 43
32157336 TAATGCCAAC
* * * * *
32157346 GTCCCAGACGTGGTCTTACATGT-AATTCAGTATCGATACCTCT
1 GTCCCAGACATGGTCTTACACGTAAATTCA-AATCGATGCCTGT
* * * *
32157389 GTCCCAGACAGGGTCTTATACG-AAA-TCAGATACAATGCC-GAT
1 GTCCCAGACATGGTCTTACACGTAAATTCAAAT-CGATGCCTG-T
*
32157431 GTCCGAGACATGGTCTTACACGTAAATTTCAAATCGATGCCTGT
1 GTCCCAGACATGGTCTTACACGTAAA-TTCAAATCGATGCCTGT
**
32157475 GTCCCAGACACAGTCTTACACG-ATAATTCA
1 GTCCCAGACATGGTCTTACACGTA-AATTCA
32157505 GATTAATACC
Statistics
Matches: 92, Mismatches: 16, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
41 2 0.02
42 28 0.30
43 28 0.30
44 28 0.30
45 6 0.07
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAAATTCAAATCGATGCCTGT
Found at i:32160953 original size:75 final size:76
Alignment explanation
Indices: 32160864--32161067 Score: 261
Period size: 75 Copynumber: 2.7 Consensus size: 76
32160854 TTGATCTACC
** * *
32160864 ATACTTAAATTATAAATTTATTTATTAAATCTAAACTATTAAATTATAAGTTCAGCTTCAC-TTA
1 ATACTTAAATTATAAATTTAACTATTAAATCTAAAATATTAAATTATAAGTTCAGCTTCACGTCA
32160928 GACAT-TTTTTA
66 -ACATCTTTTTA
* * * *
32160939 ATACTTAAATTATAAATTTAACTATTAAATATAAAATATTAAATTACAAGTTGAGCTTTACGTCA
1 ATACTTAAATTATAAATTTAACTATTAAATCTAAAATATTAAATTATAAGTTCAGCTTCACGTCA
32161004 ACATCTTTTTA
66 ACATCTTTTTA
* * *
32161015 ATATTTAAATTATAAA-TTAACTATTAAACCTAAAATATATTAAATTTTAAGTT
1 ATACTTAAATTATAAATTTAACTATTAAATCT-AAA-ATATTAAATTATAAGTT
32161068 GGGCTTATAT
Statistics
Matches: 112, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
75 71 0.63
76 26 0.23
77 15 0.13
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.43
Consensus pattern (76 bp):
ATACTTAAATTATAAATTTAACTATTAAATCTAAAATATTAAATTATAAGTTCAGCTTCACGTCA
ACATCTTTTTA
Found at i:32163685 original size:23 final size:23
Alignment explanation
Indices: 32163652--32163696 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
32163642 TGATATTCTT
32163652 ATTTGTATTGTTCTTGG-TATATG
1 ATTTGTATTGTTC-TGGTTATATG
*
32163675 ATTTGTTTTGTTCTGGTTATAT
1 ATTTGTATTGTTCTGGTTATAT
32163697 TATCACTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.16, C:0.04, G:0.20, T:0.60
Consensus pattern (23 bp):
ATTTGTATTGTTCTGGTTATATG
Found at i:32166519 original size:21 final size:22
Alignment explanation
Indices: 32166494--32166534 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
32166484 TGTGTTTTTG
*
32166494 ATGTTTAATGGTAGA-AAATGT
1 ATGTTTAATGATAGATAAATGT
*
32166515 ATGTTTGATGATAGATAAAT
1 ATGTTTAATGATAGATAAAT
32166535 AACATTTACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.00, G:0.22, T:0.39
Consensus pattern (22 bp):
ATGTTTAATGATAGATAAATGT
Found at i:32172512 original size:48 final size:48
Alignment explanation
Indices: 32172441--32172629 Score: 290
Period size: 48 Copynumber: 3.9 Consensus size: 48
32172431 TTAGGGAATT
32172441 CATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAGTTA
1 CATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAGTTA
* *
32172489 CATTGATTTGGCTTCAGGCCATGATATTGGCACTTCAGGTGCGAGTTA
1 CATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAGTTA
* * * *
32172537 CATTGATTTGGCTTTGGGCTATGATATCGGCACTTCGGGTGTGAGCTT-
1 CATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAG-TTA
* *
32172585 CATTGATTTGGCTTCGGGACATGATATTGGCACTTAGGGTGCGAG
1 CATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAG
32172630 ACTCCAGAGT
Statistics
Matches: 126, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
48 124 0.98
49 2 0.02
ACGTcount: A:0.18, C:0.17, G:0.31, T:0.34
Consensus pattern (48 bp):
CATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAGTTA
Found at i:32175528 original size:13 final size:13
Alignment explanation
Indices: 32175512--32175555 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
32175502 TTTTAGGTCA
32175512 AATAAATTATACT
1 AATAAATTATACT
**
32175525 AATAAATGCTA--
1 AATAAATTATACT
32175536 AATAAATTATACT
1 AATAAATTATACT
32175549 AATAAAT
1 AATAAAT
32175556 ATTGAATCTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 9 0.36
13 16 0.64
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.34
Consensus pattern (13 bp):
AATAAATTATACT
Found at i:32177564 original size:24 final size:24
Alignment explanation
Indices: 32177531--32177582 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
32177521 TCCGTAGGTC
* *
32177531 AAATAAATTATGCTAATAAATGCT
1 AAATAAATTATACTAATAAATACT
* *
32177555 AAATATATTATACTAATAAGTACT
1 AAATAAATTATACTAATAAATACT
32177579 AAAT
1 AAAT
32177583 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.52, C:0.08, G:0.06, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:32179504 original size:83 final size:83
Alignment explanation
Indices: 32179408--32179570 Score: 308
Period size: 83 Copynumber: 2.0 Consensus size: 83
32179398 TTTTAGTACC
32179408 TCTCTTATCAAGATAGGTGATCATTACTCATATTTTAACGTGAAAAATGGACTAAGGTCCCACTA
1 TCTCTTATCAAGATAGGTGATCATTACTCATATTTTAACGTGAAAAATGGACTAAGGTCCCACTA
32179473 ATTTATTCTCTTTTAGCA
66 ATTTATTCTCTTTTAGCA
* *
32179491 TCTCTTATCAAGATAGGTGATCATTAGTCATATTTTAACGTGAAAAATGGATTAAGGTCCCACTA
1 TCTCTTATCAAGATAGGTGATCATTACTCATATTTTAACGTGAAAAATGGACTAAGGTCCCACTA
32179556 ATTTATTCTCTTTTA
66 ATTTATTCTCTTTTA
32179571 ACATGCAAAA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
83 78 1.00
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (83 bp):
TCTCTTATCAAGATAGGTGATCATTACTCATATTTTAACGTGAAAAATGGACTAAGGTCCCACTA
ATTTATTCTCTTTTAGCA
Found at i:32184161 original size:27 final size:28
Alignment explanation
Indices: 32184104--32184173 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
32184094 AAACTTGTAC
*
32184104 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
32184132 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
32184159 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
32184174 GACACACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:32191197 original size:14 final size:13
Alignment explanation
Indices: 32191164--32191199 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
32191154 ATGTTTAAAA
32191164 ACTTTTATTTATT
1 ACTTTTATTTATT
32191177 A-TTTTATGTTATT
1 ACTTTTAT-TTATT
32191190 ACTTTTATTT
1 ACTTTTATTT
32191200 TATTTTAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 6 0.29
ACGTcount: A:0.22, C:0.06, G:0.03, T:0.69
Consensus pattern (13 bp):
ACTTTTATTTATT
Found at i:32191202 original size:14 final size:14
Alignment explanation
Indices: 32191164--32191203 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
32191154 ATGTTTAAAA
32191164 ACTTTTA-TTTATT
1 ACTTTTATTTTATT
*
32191177 A-TTTTATGTTATT
1 ACTTTTATTTTATT
32191190 ACTTTTATTTTATT
1 ACTTTTATTTTATT
32191204 TTAAGACTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 5 0.22
13 7 0.30
14 11 0.48
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.70
Consensus pattern (14 bp):
ACTTTTATTTTATT
Found at i:32198633 original size:23 final size:22
Alignment explanation
Indices: 32198607--32198661 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
32198597 GGGTTGATGA
32198607 TGAATTGAAATAAGATTATGAAT
1 TGAATTGAAATAAGA-TATGAAT
* * *
32198630 TGAATGTAAAATTATATATGAAT
1 TGAAT-TGAAATAAGATATGAAT
*
32198653 TGGATTGAA
1 TGAATTGAA
32198662 TTGAAATGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
22 3 0.12
23 16 0.62
24 7 0.27
ACGTcount: A:0.45, C:0.00, G:0.18, T:0.36
Consensus pattern (22 bp):
TGAATTGAAATAAGATATGAAT
Found at i:32198789 original size:30 final size:31
Alignment explanation
Indices: 32198704--32198789 Score: 97
Period size: 30 Copynumber: 2.9 Consensus size: 31
32198694 GTGATTGAAC
* *
32198704 TGTGATCGATTACAGGGTATGAA-ATACAAA
1 TGTGAACGATTACAGGGTATGAATATGCAAA
* **
32198734 TGTGACCGATTACAGAATATG-ATATGCAAA
1 TGTGAACGATTACAGGGTATGAATATGCAAA
*
32198764 TGTGAATGA-TACAGGGTATGAATATG
1 TGTGAACGATTACAGGGTATGAATATG
32198790 TTAATAAGTA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
29 10 0.22
30 36 0.78
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.28
Consensus pattern (31 bp):
TGTGAACGATTACAGGGTATGAATATGCAAA
Found at i:32200013 original size:21 final size:21
Alignment explanation
Indices: 32199987--32200029 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
32199977 AATATGGTGA
32199987 AAGGCAAGTTATGATTGCTGT
1 AAGGCAAGTTATGATTGCTGT
32200008 AAGGCAAGTTATGATTGCTGT
1 AAGGCAAGTTATGATTGCTGT
32200029 A
1 A
32200030 CGAGGTTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.09, G:0.28, T:0.33
Consensus pattern (21 bp):
AAGGCAAGTTATGATTGCTGT
Found at i:32200065 original size:43 final size:43
Alignment explanation
Indices: 32200004--32200089 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
32199994 GTTATGATTG
32200004 CTGTAAGGCAAGTTATGATTGCTGTACGAGGTTTGAAAACTAT
1 CTGTAAGGCAAGTTATGATTGCTGTACGAGGTTTGAAAACTAT
32200047 CTGTAAGGCAAGTTATGATTGCTGTACGAGGTTTGAAAACTAT
1 CTGTAAGGCAAGTTATGATTGCTGTACGAGGTTTGAAAACTAT
32200090 GGCATGATAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.33
Consensus pattern (43 bp):
CTGTAAGGCAAGTTATGATTGCTGTACGAGGTTTGAAAACTAT
Found at i:32201627 original size:48 final size:47
Alignment explanation
Indices: 32201555--32201740 Score: 248
Period size: 48 Copynumber: 3.9 Consensus size: 47
32201545 ATGCTAAATT
*
32201555 TGCCTGTGTAAGACCATGTTTGGGACATGGCATCGGCGATGAAATATG
1 TGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATG-AATATG
*
32201603 TGCCTGTGTAAGACCATGTCTGGGACATAGCATCGGCGATGATATATG
1 TGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA-ATATG
* *
32201651 TGCCTGTGTAAGACTATGTCTGGGACATGGCATCGGTGATG-ATATG
1 TGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAATATG
* * * * *
32201697 TGTACTAGTGTAAAACTATTTCTGGGACATGGCATCGCCGATGA
1 TG-CCT-GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
32201741 TTTGTGGATT
Statistics
Matches: 124, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
46 7 0.06
47 3 0.02
48 114 0.92
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (47 bp):
TGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAATATG
Found at i:32201741 original size:48 final size:47
Alignment explanation
Indices: 32201558--32201779 Score: 230
Period size: 48 Copynumber: 4.6 Consensus size: 47
32201548 CTAAATTTGC
* * *
32201558 CTGTGTAAGACCATGTTTGGGACATGGCATCGGCGATGAAATATGTG-C
1 CTGTGTAAAACCATGTCTGGGACATGGCATCGGCGATG--ATATGTGTA
* * * *
32201606 CTGTGTAAGACCATGTCTGGGACATAGCATCGGCGATGATATATGTGC
1 CTGTGTAAAACCATGTCTGGGACATGGCATCGGCGATGATATGTGT-A
* * *
32201654 CTGTGTAAGACTATGTCTGGGACATGGCATCGGTGATGATATGTGTA
1 CTGTGTAAAACCATGTCTGGGACATGGCATCGGCGATGATATGTGTA
* * * * *
32201701 CTAGTGTAAAACTATTTCTGGGACATGGCATCGCCGATGATTTGTGGA
1 CT-GTGTAAAACCATGTCTGGGACATGGCATCGGCGATGATATGTGTA
* * *
32201749 TTCATGTAAAACCATGTCGGGGACATGGCAT
1 CT-GTGTAAAACCATGTCTGGGACATGGCAT
32201780 TGGTACTTTA
Statistics
Matches: 151, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
46 6 0.04
47 2 0.01
48 143 0.95
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (47 bp):
CTGTGTAAAACCATGTCTGGGACATGGCATCGGCGATGATATGTGTA
Found at i:32214720 original size:70 final size:70
Alignment explanation
Indices: 32214603--32214745 Score: 214
Period size: 70 Copynumber: 2.0 Consensus size: 70
32214593 CCTTGTTCGA
** * * *
32214603 GCCTGTTAGAATGGCACGGGTGTATGTTCTACCCGTGTGAGTCGTGCTTCAATTCTGCCAAATTG
1 GCCTGTTAGAATGGCACGGGCATATGCTCTACCCGTATCAGTCGTGCTTCAATTCTGCCAAATTG
32214668 ACACG
66 ACACG
* * *
32214673 GCCTGTTAGAATGGCACGGGCATGTGCTCTACTCGTATCAGTTGTGCTTCAATTCTGCCAAATTG
1 GCCTGTTAGAATGGCACGGGCATATGCTCTACCCGTATCAGTCGTGCTTCAATTCTGCCAAATTG
32214738 ACACG
66 ACACG
32214743 GCC
1 GCC
32214746 GTGTGGGCTG
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
70 65 1.00
ACGTcount: A:0.20, C:0.24, G:0.26, T:0.29
Consensus pattern (70 bp):
GCCTGTTAGAATGGCACGGGCATATGCTCTACCCGTATCAGTCGTGCTTCAATTCTGCCAAATTG
ACACG
Found at i:32218680 original size:71 final size:71
Alignment explanation
Indices: 32218594--32218757 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
32218584 CGATTTGTCT
32218594 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
32218659 CTTTCA
66 CTTTCA
*
32218665 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
32218730 CTTTCA
66 CTTTCA
32218736 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
32218758 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
CTTTCA
Found at i:32218795 original size:71 final size:70
Alignment explanation
Indices: 32218594--32218791 Score: 267
Period size: 71 Copynumber: 2.8 Consensus size: 70
32218584 CGATTTGTCT
* * *
32218594 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
32218659 CTTTCA
65 CTTTCA
* * * *
32218665 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
32218730 CTTTCA
65 CTTTCA
* *
32218736 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
32218792 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 95 0.79
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTACC
TTTCA
Found at i:32223203 original size:68 final size:70
Alignment explanation
Indices: 32223131--32223328 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
32223121 ACACCCTGTA
* * * *
32223131 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
32223193 ATAAAT
65 ATAAAT
*
32223199 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
32223264 ATAAAT
65 ATAAAT
*
32223270 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
32223329 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:32223242 original size:41 final size:41
Alignment explanation
Indices: 32223197--32223314 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
32223187 TGAAAGATAA
32223197 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
32223238 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32223268 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32223309 ATGTAG
1 ATGTAG
32223315 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:32223254 original size:71 final size:71
Alignment explanation
Indices: 32223165--32223328 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
32223155 GAGATGTATC
32223165 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32223230 AGGACA
66 AGGACA
32223236 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32223301 AGGACA
66 AGGACA
32223307 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
32223329 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:32230769 original size:68 final size:70
Alignment explanation
Indices: 32230697--32230894 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
32230687 ACACCCTGTA
* * * *
32230697 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
32230759 ATAAAT
65 ATAAAT
*
32230765 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
32230830 ATAAAT
65 ATAAAT
*
32230836 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
32230895 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:32230808 original size:41 final size:41
Alignment explanation
Indices: 32230763--32230880 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
32230753 TGAAAGATAA
32230763 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
32230804 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32230834 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32230875 ATGTAG
1 ATGTAG
32230881 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:32230820 original size:71 final size:71
Alignment explanation
Indices: 32230731--32230894 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
32230721 GAGATGTATC
32230731 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32230796 AGGACA
66 AGGACA
32230802 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32230867 AGGACA
66 AGGACA
32230873 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
32230895 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:32239578 original size:93 final size:93
Alignment explanation
Indices: 32239466--32239637 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
32239456 GCCCATAAGT
* *
32239466 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
**
32239531 CGATTTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
32239559 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32239624 CGAGCTCGGATGCC
66 CGAGCTCGGATGCC
32239638 CAAATATCGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:32239633 original size:46 final size:46
Alignment explanation
Indices: 32239458--32239633 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
32239448 TGTAACCCGC
* *
32239458 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
** * *
32239504 CCATAAGTGAACTCGGACTCAACTCAACGATTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCG---CAT
* * *
32239554 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
32239597 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
32239634 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 66 0.61
47 31 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:32243259 original size:45 final size:45
Alignment explanation
Indices: 32243190--32243408 Score: 261
Period size: 45 Copynumber: 5.0 Consensus size: 45
32243180 TATCGCACAG
*
32243190 TACTATTCGGGCCTTTGAGACTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
32243235 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
32243280 TACCAGTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
** *
32243325 TACTATTCGGG-CTTCAAGCCTAGCAGGC-AAAATGCCGGTGA-A
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
** * *
32243367 TGA--ATTCGGGTTTTTTAAACCTAGCAGGCTA-AATGCCGGTGA
1 T-ACTATTCGGG-CCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
32243409 TTTGATAAAA
Statistics
Matches: 153, Mismatches: 17, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
41 7 0.05
42 2 0.01
43 38 0.25
44 15 0.10
45 91 0.59
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:32262803 original size:34 final size:34
Alignment explanation
Indices: 32262760--32262826 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
32262750 TCTTTAACTT
*
32262760 GCAACTGGTAGTATCCGAATCTCAAATCTATCTC
1 GCAACTGGTAGTATCCAAATCTCAAATCTATCTC
32262794 GCAACTGGTAGTATCCAAATCTCAAATCTATCT
1 GCAACTGGTAGTATCCAAATCTCAAATCTATCT
32262827 TTAAAAACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.30
Consensus pattern (34 bp):
GCAACTGGTAGTATCCAAATCTCAAATCTATCTC
Found at i:32269129 original size:2 final size:2
Alignment explanation
Indices: 32269122--32269149 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
32269112 TGTCCATTTC
32269122 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32269150 AATCGTGTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:32272916 original size:39 final size:39
Alignment explanation
Indices: 32272816--32273000 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 39
32272806 TCGAATGATG
* * *
32272816 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
*
32272856 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
32272895 TCCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 T-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
* * *
32272935 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
32272975 ACCGGGC-AATGTCCTGAAGGCATTTG
1 TCCGGGCTAA-GTCCCGAAGGCATTTG
32273001 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 16
0.80 0.09 0.10
Matches are distributed among these distances:
39 36 0.29
40 79 0.64
41 8 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:32273022 original size:79 final size:79
Alignment explanation
Indices: 32272869--32273033 Score: 176
Period size: 79 Copynumber: 2.1 Consensus size: 79
32272859 GGACTAAGAT
* * **
32272869 CCGAAGGCATTTGTGCGAGTTACTAATCCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGCTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
* *
32272934 ATTCGGGTTAAGTC
66 ATTCCGGTTAAATC
* *
32272948 CCGAAGGCATTTGTGCGAGCTACT-ATAACCGGGC-AATGTCCTGAAGGCATTTGAACGAG-TAG
1 CCGAAGGCATTTGTGCGAGCTACTAAT-ACCGGGCTAA-G-CCCGAAGGCATTGGAACGAGTTA-
* *
32273010 CTATA-TCCGGTTAAATT
62 CTAAATTCCGGTTAAATC
32273027 CCGAAGG
1 CCGAAGG
32273034 TACGTGATTC
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
78 4 0.06
79 48 0.67
80 20 0.28
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGCTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATTCCGGTTAAATC
Found at i:32281084 original size:80 final size:80
Alignment explanation
Indices: 32280932--32281109 Score: 204
Period size: 80 Copynumber: 2.2 Consensus size: 80
32280922 TCGAATGATG
* *
32280932 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
**
32280997 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * *
32281012 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCAT
*
32281075 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
*
32281092 TCC-GGTTAAAT-CCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
32281110 TACGTGATTC
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 7 0.08
79 10 0.12
80 61 0.72
81 7 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:32281091 original size:40 final size:40
Alignment explanation
Indices: 32280933--32281077 Score: 188
Period size: 40 Copynumber: 3.6 Consensus size: 40
32280923 CGAATGATGT
* * *
32280933 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
*
32280973 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32281012 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32281053 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32281078 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
39 2 0.02
40 80 0.87
41 10 0.11
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:32283828 original size:40 final size:40
Alignment explanation
Indices: 32283730--32283905 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
32283720 ACCCAAGTAT
*
32283730 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
32283769 CTTC-GGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
32283808 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
32283848 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
32283888 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
32283906 TTATCATTCG
Statistics
Matches: 118, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
37 1 0.01
38 6 0.05
39 35 0.30
40 74 0.63
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:32292911 original size:40 final size:40
Alignment explanation
Indices: 32292856--32293033 Score: 229
Period size: 40 Copynumber: 4.5 Consensus size: 40
32292846 CGGATGGTAA
**
32292856 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
32292896 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAT
*
32292936 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* * *
32292976 CCGGGCTAAGTCCTGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
* *
32293016 CC-GGCTAAATCTCGAAGG
1 CCGGGCTAAGTCCCGAAGG
32293034 TACTTGGTTT
Statistics
Matches: 126, Mismatches: 8, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
39 16 0.13
40 109 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:32295006 original size:40 final size:40
Alignment explanation
Indices: 32294939--32295115 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
32294929 ACCCAAGTAT
*
32294939 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
32294978 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
32295018 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
32295058 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
32295098 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
32295116 TTATCATCCG
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 104 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:32303702 original size:53 final size:54
Alignment explanation
Indices: 32303640--32303846 Score: 191
Period size: 53 Copynumber: 3.8 Consensus size: 54
32303630 TTCCTTTTTA
* * *
32303640 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATA-
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * * *
32303693 AACTCACCATTTCCATGCCTTGGCATGGTTTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * * *
32303747 TAGTTTATCAATGTCATGTCTTGACATGGTCTTACATGATTTTCTTTCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
32303802 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGAATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
32303847 AAACGCTAAT
Statistics
Matches: 116, Mismatches: 36, Indels: 3
0.75 0.23 0.02
Matches are distributed among these distances:
53 45 0.39
54 34 0.29
55 37 0.32
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:32305260 original size:30 final size:31
Alignment explanation
Indices: 32305236--32305294 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
32305226 GTAAATACTC
*
32305236 AAAATTTGAAGGA-TTAAAGTGTAAATATGA
1 AAAAGTTGAAGGACTTAAAGTGTAAATATGA
* *
32305266 AAAAGTTGAAGGACTTATAGTGCAAATAT
1 AAAAGTTGAAGGACTTAAAGTGTAAATAT
32305295 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 12 0.48
31 13 0.52
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.29
Consensus pattern (31 bp):
AAAAGTTGAAGGACTTAAAGTGTAAATATGA
Found at i:32306364 original size:31 final size:31
Alignment explanation
Indices: 32306329--32306392 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
32306319 CCTTTTCATG
*
32306329 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTAGGCCGAAGCCT
* **
32306360 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTCCATAACACTAGGCCGAAGCCT
32306391 TT
1 TT
32306393 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTAGGCCGAAGCCT
Found at i:32306635 original size:24 final size:24
Alignment explanation
Indices: 32306584--32306726 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
32306574 GCTTTATCAT
*
32306584 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
32306609 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
32306633 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
32306656 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
32306680 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
32306704 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
32306727 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:32306663 original size:47 final size:48
Alignment explanation
Indices: 32306584--32306725 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
32306574 GCTTTATCAT
* *
32306584 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
32306633 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
32306680 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
32306726 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:32306684 original size:71 final size:72
Alignment explanation
Indices: 32306583--32306726 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
32306573 TGCTTTATCA
*
32306583 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
32306648 GCCCTTT
66 GCCCTTT
* * **
32306655 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
32306718 AGCCCTTT
65 AGCCCTTT
32306726 T
1 T
32306727 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:32306801 original size:20 final size:20
Alignment explanation
Indices: 32306776--32306836 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
32306766 TTATGATTAC
32306776 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
32306796 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
32306816 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
32306836 A
1 A
32306837 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:32308353 original size:80 final size:80
Alignment explanation
Indices: 32308168--32308565 Score: 521
Period size: 80 Copynumber: 4.9 Consensus size: 80
32308158 GGGTATTTTA
* * * * *
32308168 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAAC-AGTAATTCTAT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGT
*
32308232 AAATCGAGGGTAAAATG
65 AAATCG-GGGTAAAACG
* * *
32308249 GTAATTCTGTAAATCGAGGGTGAAACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
*
32308314 AATCGGGGTAAAATG
66 AATCGGGGTAAAACG
* * *
32308329 GTAATTCTGTAAATCGAGGGTGAAACGGTAATTCTGTAAATCGAGGGTGAAACGATAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
32308394 AATCGGGGTAAAACG
66 AATCGGGGTAAAACG
* ** * *
32308409 GTAATTATGTAAATTAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA-TAGTAATTCTGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGT
**
32308473 AAACTAAGGGTAAAACG
65 AAA-TCGGGGTAAAACG
* ** *
32308490 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGATAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
32308555 AATCGAGGGTA
66 AATCG-GGGTA
32308566 CTTTGGTAAT
Statistics
Matches: 282, Mismatches: 30, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
79 1 0.00
80 145 0.51
81 134 0.48
82 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (80 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
AATCGGGGTAAAACG
Found at i:32308576 original size:27 final size:27
Alignment explanation
Indices: 32308168--32308565 Score: 514
Period size: 27 Copynumber: 14.8 Consensus size: 27
32308158 GGGTATTTTA
* *
32308168 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
32308195 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
32308222 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
32308249 GTAATTCTGTAAATCGAGGGTGAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
32308276 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
32308303 ATAATTATGTAAATCG-GGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
32308329 GTAATTCTGTAAATCGAGGGTGAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
32308356 GTAATTCTGTAAATCGAGGGTGAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
32308383 ATAATTATGTAAATCG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
32308409 GTAATTATGTAAATTAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
32308436 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
32308463 GTAATTCTGTAAA-CTAAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
32308490 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
32308517 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
32308544 ATAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
32308566 CTTTGGTAAT
Statistics
Matches: 327, Mismatches: 40, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
26 47 0.14
27 279 0.85
28 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:32308587 original size:27 final size:27
Alignment explanation
Indices: 32308516--32308739 Score: 193
Period size: 27 Copynumber: 8.3 Consensus size: 27
32308506 AGGGTAAAAC
****
32308516 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * * *
32308543 GATAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
32308570 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** ** *
32308597 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
32308624 AGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
32308651 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* * *
32308678 GGTAATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
32308705 AGTAATTTTACAAAGC-AGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
32308731 GGTAATTTT
1 GGTAATTTT
32308740 GTAAACCAAA
Statistics
Matches: 164, Mismatches: 30, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
26 19 0.12
27 143 0.87
28 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:32308615 original size:54 final size:54
Alignment explanation
Indices: 32308479--32308638 Score: 142
Period size: 54 Copynumber: 3.0 Consensus size: 54
32308469 CTGTAAACTA
** ** ***
32308479 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCG
1 AGGGTAAAACAATAATTCTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
* * *
32308533 AGGGTAAAACGATAATTCTATAAATCGAGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTAAAACAATAATTCTACAAATCGAGGGTA-TTTCGGTAATTTTACAAATCG
*** * ** * *
32308587 AGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAAT
1 AGGGTAAAACAATAATTCTACAAATCGAGGGTATTTCGGTAATTTTACAAAT
32308639 TAGGGGTATT
Statistics
Matches: 87, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
53 3 0.03
54 84 0.97
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (54 bp):
AGGGTAAAACAATAATTCTACAAATCGAGGGTATTTCGGTAATTTTACAAATCG
Found at i:32308745 original size:53 final size:54
Alignment explanation
Indices: 32308642--32308757 Score: 175
Period size: 53 Copynumber: 2.2 Consensus size: 54
32308632 CACAAATTAG
*
32308642 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
*
32308696 GGGTATTTTAGTAATTTTACAAAGC-A-GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTATAAACCAA
*
32308749 -AGTATTTTA
1 GGGTATTTTA
32308758 AATAGGGATA
Statistics
Matches: 58, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
52 8 0.14
53 26 0.45
54 23 0.40
55 1 0.02
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:32308753 original size:26 final size:26
Alignment explanation
Indices: 32308643--32308756 Score: 129
Period size: 27 Copynumber: 4.3 Consensus size: 26
32308633 ACAAATTAGG
* *
32308643 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
*
32308670 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
* * *
32308696 GGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTACAAACCAA
**
32308723 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
*
32308749 AGTATTTT
1 GGTATTTT
32308757 AAATAGGGAT
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
26 28 0.38
27 45 0.62
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAA
Found at i:32318082 original size:19 final size:19
Alignment explanation
Indices: 32318058--32318109 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 19
32318048 TATGTGTACA
32318058 CCAGGTAGACAAGAGAGCT
1 CCAGGTAGACAAGAGAGCT
*
32318077 CCAGGT-G--AAG-GA-CA
1 CCAGGTAGACAAGAGAGCT
*
32318091 CCATGTAGACAAGAGAGCT
1 CCAGGTAGACAAGAGAGCT
32318110 ATGAGATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 10
0.66 0.08 0.26
Matches are distributed among these distances:
14 6 0.24
15 3 0.12
16 3 0.12
17 3 0.12
18 3 0.12
19 7 0.28
ACGTcount: A:0.37, C:0.21, G:0.31, T:0.12
Consensus pattern (19 bp):
CCAGGTAGACAAGAGAGCT
Found at i:32320811 original size:49 final size:49
Alignment explanation
Indices: 32320712--32320844 Score: 153
Period size: 49 Copynumber: 2.7 Consensus size: 49
32320702 TGTTGTGTGT
* * * *
32320712 CAATGTAAGACCTTTCTGGAACATGGCATCGACACTGATAAATAAGAGC
1 CAATGTAAGACCTGTCTGGGACATGACATCGGCACTGATAAATAAGAGC
* * *
32320761 CAGTGTAAGACCTGTCTGGGACATGACATCGGC-CTTGCTATATGAA-AGC
1 CAATGTAAGACCTGTCTGGGACATGACATCGGCAC-TGATAAAT-AAGAGC
*
32320810 CAATGTAAGACCATGTCTGGGACATGACGTCGGCA
1 CAATGTAAGACC-TGTCTGGGACATGACATCGGCA
32320845 TCTTAACCCA
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
48 1 0.01
49 48 0.68
50 22 0.31
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.23
Consensus pattern (49 bp):
CAATGTAAGACCTGTCTGGGACATGACATCGGCACTGATAAATAAGAGC
Found at i:32328268 original size:40 final size:40
Alignment explanation
Indices: 32328213--32328388 Score: 284
Period size: 40 Copynumber: 4.4 Consensus size: 40
32328203 AAACCAAGTA
*
32328213 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
32328253 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32328293 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** *
32328333 CCTTCGGGACTTAGCCCGGA-ATTAGTCGCTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
32328373 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
32328389 TGGTTACCAT
Statistics
Matches: 130, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
39 2 0.02
40 128 0.98
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32336164 original size:39 final size:40
Alignment explanation
Indices: 32336110--32336243 Score: 175
Period size: 40 Copynumber: 3.4 Consensus size: 40
32336100 AAACCAAGTA
* * *
32336110 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAAGG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
32336149 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** *
32336189 CCTTCGGGACTTAGCCCGGA-ATTAGTCGCTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
32336229 CCTTCGGGACTTAGC
1 CCTTCGGGACTTAGC
32336244 TCGGTTACCA
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
39 15 0.17
40 71 0.83
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32337584 original size:9 final size:9
Alignment explanation
Indices: 32337554--32337601 Score: 51
Period size: 9 Copynumber: 5.0 Consensus size: 9
32337544 TCATTCTTCT
32337554 TTTCTTTTA
1 TTTCTTTTA
32337563 TTATCCTTATTA
1 TT-T-CTT-TTA
32337575 TTTCTTTTA
1 TTTCTTTTA
* *
32337584 TTTATTTTC
1 TTTCTTTTA
32337593 TTTCTTTTA
1 TTTCTTTTA
32337602 CATAAAATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
9 19 0.59
10 4 0.12
11 4 0.12
12 5 0.16
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (9 bp):
TTTCTTTTA
Found at i:32339775 original size:48 final size:46
Alignment explanation
Indices: 32339716--32339839 Score: 133
Period size: 48 Copynumber: 2.7 Consensus size: 46
32339706 TATGTGTGCT
* *
32339716 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-TATTTAAACC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGA---AAACC
* * * * * * *
32339764 AGTGTAAGACATGTGTGGGACATGAATCGACATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAAAACC
32339810 AGTGTAAGACATGTCTGGGACATGCATCGG
1 AGTGTAAGACATGTCTGGGACATGCATCGG
32339840 TGTCGCAATA
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
46 29 0.46
48 33 0.52
49 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAAAACC
Found at i:32339974 original size:49 final size:49
Alignment explanation
Indices: 32339902--32340029 Score: 168
Period size: 49 Copynumber: 2.6 Consensus size: 49
32339892 GTTTTGTGTT
* * *
32339902 AGTGTAAGACCTCTCTGGGACATGGCATTGACAC-CGATAAATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAAATGAAAGCC
* * * *
32339951 AGTGTAAGACCTGTCTAGGACATGGCATCGGCCTCGCTATATGAAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAAATGAAAGCC
32340000 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACC-TGTCTGGGACATGGCATC
32340030 AGCATCTTAA
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
48 1 0.01
49 51 0.74
50 17 0.25
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAAATGAAAGCC
Found at i:32343432 original size:46 final size:45
Alignment explanation
Indices: 32343290--32343496 Score: 149
Period size: 46 Copynumber: 4.5 Consensus size: 45
32343280 TGTGAGCTAC
** *
32343290 TGTAAGA-CATGTCTGGGACATGCATCGGCCACATTTTGA-G-ATCCAG
1 TGTAAGACCATGTCTGGGACATGCATC-G-C-CA-TGAGACGTAGCCAG
* * *
32343336 TGTAAGACCATGCCTGGGACATGACATCGGCATTGAGACG-AGTGCTAG
1 TGTAAGACCATGTCTGGGACATG-CATCGCCA-TGAGACGTA--GCCAG
*
32343384 TGTAAGA-CATGTCTGGGACATGCTTCGACCATGAGACGTAAGCCAG
1 TGTAAGACCATGTCTGGGACATGCATCG-CCATGAGACGT-AGCCAG
* * * * *
32343430 TGTAAGA-CATGTCTAGGACATGCATCGGCTACGAGATGT-GTCAG
1 TGTAAGACCATGTCTGGGACATGCATC-GCCATGAGACGTAGCCAG
*
32343474 TGTAAGACCATGTCTGGAACATG
1 TGTAAGACCATGTCTGGGACATG
32343497 GCAATGGCAC
Statistics
Matches: 133, Mismatches: 18, Indels: 21
0.77 0.10 0.12
Matches are distributed among these distances:
44 11 0.08
45 19 0.14
46 56 0.42
47 32 0.24
48 15 0.11
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (45 bp):
TGTAAGACCATGTCTGGGACATGCATCGCCATGAGACGTAGCCAG
Found at i:32352523 original size:49 final size:50
Alignment explanation
Indices: 32352395--32352527 Score: 171
Period size: 51 Copynumber: 2.7 Consensus size: 50
32352385 TCTATTGTGA
*
32352395 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCC-AAAACTGT
* * * * * *
32352446 GATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTA-CC-AGACTGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAAAACTG-T
32352495 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
32352528 TGCATACCAG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
48 5 0.07
49 30 0.43
50 2 0.03
51 33 0.47
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (50 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAAAACTGT
Found at i:32352536 original size:49 final size:48
Alignment explanation
Indices: 32352395--32352538 Score: 180
Period size: 49 Copynumber: 2.9 Consensus size: 48
32352385 TCTATTGTGA
*
32352395 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CC--AGACTGT
* * * * * *
32352446 GATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGACTGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTG-T
*
32352495 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
32352539 TAGCTTCGGC
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
48 5 0.06
49 38 0.49
50 2 0.03
51 33 0.42
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (48 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTGT
Done.