Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 109 of 325
Found at i:32355561 original size:66 final size:66
Alignment explanation
Indices: 32355483--32355609 Score: 175
Period size: 66 Copynumber: 1.9 Consensus size: 66
32355473 CTTATCCGGA
* *
32355483 CAGCTGTCAGGTGCGGCAAAAATTATAGACGCAATCT-AGAATTCACTAATACAGTGACATTGTG
1 CAGCTATCAGGTGCGGCAAAAATTATAGACGCAATCTAAG-ATTAACTAATACAGTGACATTGTG
32355547 GG
65 GG
* * * * *
32355549 CAGCTATCAGGTGCGGCAACAATTCTGGACGCAATCTAAGATTAACTCATGCAGTGACATT
1 CAGCTATCAGGTGCGGCAAAAATTATAGACGCAATCTAAGATTAACTAATACAGTGACATT
32355610 AATGCAATAA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
66 51 0.96
67 2 0.04
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24
Consensus pattern (66 bp):
CAGCTATCAGGTGCGGCAAAAATTATAGACGCAATCTAAGATTAACTAATACAGTGACATTGTGG
G
Found at i:32365742 original size:46 final size:46
Alignment explanation
Indices: 32365680--32365804 Score: 159
Period size: 48 Copynumber: 2.7 Consensus size: 46
32365670 TTTATGCTCT
32365680 AGTGTAAGACATGTCT-GGACATGCATTGGCCACATT-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCC-CATTAATGAGAGCC
* *
32365725 ATTGTAAGACCATGTCTGGGACATGGCATTGG--CATTGAAATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCCATT--AATGAGAGCC
32365773 AGTGTAAGACATGTCTGGGACATGCATTGGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCC
32365805 TCGCGACGTA
Statistics
Matches: 69, Mismatches: 3, Indels: 13
0.81 0.04 0.15
Matches are distributed among these distances:
45 12 0.17
46 14 0.20
47 20 0.29
48 23 0.33
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATTGGCCCATTAATGAGAGCC
Found at i:32365827 original size:46 final size:47
Alignment explanation
Indices: 32365680--32365939 Score: 185
Period size: 47 Copynumber: 5.5 Consensus size: 47
32365670 TTTATGCTCT
* *
32365680 AGTGTAAGA-CATGTCT-GGACATGCATTGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATTGGCCTCGA-AATGAGAGCC
* * * *
32365725 ATTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAAATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATTGGCCTCGAAATGAGAGCC
** *
32365773 AGTGTAAGA-CATGTCTGGGACATGCATTGGCCTCGCGACGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGCATTGGCCTCGAAATG-AGAGCC
* * * * * ** * *
32365819 AGTCTAAGACCATGTTTGGGACATGGCGTCGACCTCGATCTCGATAGTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATTGGCCTCGAAAT-GAGAGCC
* * * *
32365868 AGTGTAAGACCATGTCTGGGACTTGGCA-TCGACT--TAATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATTGGCCTCGAAAT-GA-GAGCC
*
32365915 AGTGTAAGACCATGTCTGAGACATG
1 AGTGTAAGACCATGTCTGGGACATG
32365940 GCATCGGCAT
Statistics
Matches: 166, Mismatches: 39, Indels: 19
0.74 0.17 0.08
Matches are distributed among these distances:
45 8 0.05
46 34 0.20
47 59 0.36
48 36 0.22
49 29 0.17
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATTGGCCTCGAAATGAGAGCC
Found at i:32366947 original size:13 final size:13
Alignment explanation
Indices: 32366929--32366953 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32366919 TGGCCGTGTG
32366929 AAGGACACGGGCT
1 AAGGACACGGGCT
32366942 AAGGACACGGGC
1 AAGGACACGGGC
32366954 ATGTGCCAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.40, T:0.04
Consensus pattern (13 bp):
AAGGACACGGGCT
Found at i:32368117 original size:24 final size:24
Alignment explanation
Indices: 32368085--32368130 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
32368075 TAAAGGTAGG
*
32368085 TTCATATGTCAATTGTGAGCAACT
1 TTCATATGTCAATTATGAGCAACT
32368109 TTCATATGTCAATTATGAGCAA
1 TTCATATGTCAATTATGAGCAA
32368131 GTTAAGGTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (24 bp):
TTCATATGTCAATTATGAGCAACT
Found at i:32370368 original size:49 final size:49
Alignment explanation
Indices: 32370292--32370406 Score: 133
Period size: 49 Copynumber: 2.3 Consensus size: 49
32370282 ACGACTAAGA
* *** * * *
32370292 AACATAAAATATGTTCTTTCACTTAACACATTTATGAGAATGGCTAAAG
1 AACATTAAATATGTTCACGCACCTAACACACTTATCAGAATGGCTAAAG
* *
32370341 AACATTAAATATGTTCACGCACCTAACACACTTATCAGAATGGCTGAGG
1 AACATTAAATATGTTCACGCACCTAACACACTTATCAGAATGGCTAAAG
32370390 AACA-TAAGATATGTTCA
1 AACATTAA-ATATGTTCA
32370407 AGCTTACCCT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
48 3 0.05
49 53 0.95
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (49 bp):
AACATTAAATATGTTCACGCACCTAACACACTTATCAGAATGGCTAAAG
Found at i:32370711 original size:31 final size:31
Alignment explanation
Indices: 32370653--32370712 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
32370643 TACCAGAGAC
* * **
32370653 TTATCATAGAGAGCTCGCATAGGGAGCTTAT
1 TTATCACAAAGAGCTCGCATAAAGAGCTTAT
32370684 TTATCACAAAGAGCTCGCATAAAGAGCTT
1 TTATCACAAAGAGCTCGCATAAAGAGCTT
32370713 GCTTGAAAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (31 bp):
TTATCACAAAGAGCTCGCATAAAGAGCTTAT
Found at i:32370855 original size:25 final size:26
Alignment explanation
Indices: 32370820--32370874 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 26
32370810 GAGCTTGCAT
* *
32370820 AAAACATATTTTTAAAACAGA-CTTA
1 AAAACACATTTTGAAAACAGAGCTTA
32370845 AAAACACATTTTGAAAACAGAGTCTTA
1 AAAACACATTTTGAAAACAGAG-CTTA
32370872 AAA
1 AAA
32370875 CTTAAAAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 19 0.73
27 7 0.27
ACGTcount: A:0.53, C:0.13, G:0.07, T:0.27
Consensus pattern (26 bp):
AAAACACATTTTGAAAACAGAGCTTA
Found at i:32377897 original size:30 final size:30
Alignment explanation
Indices: 32377861--32378202 Score: 464
Period size: 30 Copynumber: 11.5 Consensus size: 30
32377851 GACAAGATTG
* * * * *
32377861 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
32377891 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
* ** *
32377919 GCACTAAGTGTGCGAGTTTGATTATATAGCACTA
1 GCACTAAGTGTGCGAG-CTGAAAAT-TA-TA-TA
*
32377953 ACACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
32377982 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
32378012 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
32378041 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
32378071 GCACTGAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
32378101 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
32378130 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
32378160 GCACTGAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
32378189 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
32378203 GATTCACTAT
Statistics
Matches: 287, Mismatches: 15, Indels: 21
0.89 0.05 0.07
Matches are distributed among these distances:
28 27 0.09
29 101 0.35
30 130 0.45
31 6 0.02
32 2 0.01
33 5 0.02
34 16 0.06
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:32377968 original size:34 final size:28
Alignment explanation
Indices: 32377862--32377953 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 28
32377852 ACAAGATTGG
* * * *
32377862 CACTAAGTGTGCGGGTTTAAAATTGTACAG
1 CACTAAGTGTGCGAGTTT--GATTATACAA
*
32377892 CACTAAGTGTGCGAGTTTGATTATACAG
1 CACTAAGTGTGCGAGTTTGATTATACAA
* *
32377920 CACTAAGTGTGCGAGTTTGATTATATAG
1 CACTAAGTGTGCGAGTTTGATTATACAA
32377948 CACTAA
1 CACTAA
32377954 CACTAAGTGT
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
28 41 0.71
30 17 0.29
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTGATTATACAA
Found at i:32378029 original size:59 final size:59
Alignment explanation
Indices: 32377861--32378202 Score: 458
Period size: 59 Copynumber: 5.7 Consensus size: 59
32377851 GACAAGATTG
* * * * * * * *
32377861 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG--ATTATACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAG-CTGAAAATATATA
* ** * *
32377919 GCACTAAGTGTGCGAGTTTGATTATATAGCACTAACACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAG-CTGAAAAT-TA-TA-TAGCACTAAGTGTGCGAGCTGAAAATATATA
32377982 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
*
32378041 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTGAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAA-TATATA
32378101 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAA-TATATA
*
32378160 GCACTGAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCG
32378203 GATTCACTAT
Statistics
Matches: 258, Mismatches: 19, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
58 15 0.06
59 164 0.64
60 31 0.12
61 5 0.02
62 21 0.08
63 22 0.09
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (59 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:32378088 original size:89 final size:89
Alignment explanation
Indices: 32377861--32378202 Score: 478
Period size: 89 Copynumber: 3.8 Consensus size: 89
32377851 GACAAGATTG
* * * * * * *
32377861 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG---ATTATACAGCAC
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAG-CTGAAAATTATATAGCAC
* * *
32377923 TAAGTGTGCGAGTTTGATTATATAGCACTA
65 TAAGTGTGCGAG-CTGA--AAATA-TA-TA
*
32377953 ACACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATTATATAGCACT
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATTATATAGCACT
32378017 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
*
32378041 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTGAGTGTGCGAGCTGAAAATTATATAGCACT
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATTATATAGCACT
32378106 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
*
32378130 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTGAGTGTGCGAGCTGAAAA-TATATAGCACT
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATTATATAGCACT
32378194 AAGTGTGCG
66 AAGTGTGCG
32378203 GATTCACTAT
Statistics
Matches: 233, Mismatches: 13, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
88 44 0.19
89 118 0.51
90 6 0.03
91 20 0.09
92 22 0.09
93 23 0.10
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATTATATAGCACT
AAGTGTGCGAGCTGAAAATATATA
Found at i:32379925 original size:45 final size:45
Alignment explanation
Indices: 32379876--32380047 Score: 172
Period size: 45 Copynumber: 3.7 Consensus size: 45
32379866 ATCTCGTAGT
*
32379876 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACTC-T-TGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC-TACTCATAT-AGGC
* * *
32379921 CGATGCATGTCCCAGACATGTCTTACACTAGC-ACTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTACTCATAT--AGGC
* * * *
32379967 TGATCCCATATCCTAGACATGGTCTTACACTAGCT-CTCATAATATGGC
1 CGAT-GCATGTCCCAGACAT-GTCTTACACTAGCTACTCAT-ATA-GGC
32380015 CGATGCATGTCCCAGACATGTCTTACACTAGCT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT
32380048 CACACAAGTG
Statistics
Matches: 105, Mismatches: 14, Indels: 15
0.78 0.10 0.11
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 32 0.30
46 20 0.19
47 25 0.24
48 22 0.21
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTACTCATATAGGC
Found at i:32381532 original size:29 final size:29
Alignment explanation
Indices: 32381470--32381568 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
32381460 ACAGTAAGTC
32381470 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
32381498 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
*
32381527 CTCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
32381555 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32381569 CAATCTCATT
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
28 33 0.49
29 33 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.11, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:32382696 original size:17 final size:18
Alignment explanation
Indices: 32382659--32382696 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
32382649 CACTTTTTTT
32382659 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
32382678 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
32382695 TT
1 TT
32382697 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:32391597 original size:30 final size:29
Alignment explanation
Indices: 32391554--32391617 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
32391544 CAAGTAACCG
32391554 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
*
32391583 AAGCTAGTTTAAATCGCACACTTAGTGCTA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
32391613 AAGCT
1 AAGCT
32391618 TCCGACTCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:32397765 original size:28 final size:28
Alignment explanation
Indices: 32397696--32397796 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
32397686 GACAAGATTG
* * * *
32397696 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
32397726 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
32397754 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
32397783 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
32397797 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:32405719 original size:28 final size:28
Alignment explanation
Indices: 32405650--32405750 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
32405640 GACAAGATTG
* * * *
32405650 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
32405680 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
32405708 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
32405737 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
32405751 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:32413533 original size:39 final size:39
Alignment explanation
Indices: 32413490--32413633 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
32413480 GTGCGAATTG
*
32413490 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCTAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
32413529 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
32413568 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
32413607 TGATATCCGGGTTAAGTCCCGAAGGCA
1 TGATATCCGGGCTAAG-CCCGAAGGCA
32413634 TTTGAGCGGG
Statistics
Matches: 100, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 90 0.90
40 10 0.10
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:32415350 original size:30 final size:30
Alignment explanation
Indices: 32415316--32415375 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
32415306 CTTTAATACG
32415316 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
32415346 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
32415376 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:32417171 original size:40 final size:43
Alignment explanation
Indices: 32417119--32417216 Score: 121
Period size: 40 Copynumber: 2.3 Consensus size: 43
32417109 CGACTGTGTT
* * * *
32417119 TGGCACTTAGTGTGCGATTC-GAGATAGCTTCGGCTT-TGTG-
1 TGGCACTAAGTGTGCAATACTGAGATAGCTTCGACTTATGTGA
*
32417159 TGGCACTAAGTGTGCAATACTGAGATAGCTTCGATTTAATGTGA
1 TGGCACTAAGTGTGCAATACTGAGATAGCTTCGACTT-ATGTGA
32417203 TGGCACTAAGTGTG
1 TGGCACTAAGTGTG
32417217 TGATATCGTT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 17 0.35
41 14 0.29
43 4 0.08
44 14 0.29
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.33
Consensus pattern (43 bp):
TGGCACTAAGTGTGCAATACTGAGATAGCTTCGACTTATGTGA
Found at i:32423076 original size:34 final size:34
Alignment explanation
Indices: 32423025--32423097 Score: 103
Period size: 34 Copynumber: 2.1 Consensus size: 34
32423015 ATAGTGTGGA
*
32423025 CAGTCTGGGCCTAAGCCCA-TATTAGTAGCAATAT
1 CAGTGTGGGCCTAAGCCCATTATT-GTAGCAATAT
* *
32423059 CAGTGTGGGCCTTAGCCCATTATTGTAGCAGTAT
1 CAGTGTGGGCCTAAGCCCATTATTGTAGCAATAT
32423093 CAGTG
1 CAGTG
32423098 ATGCATACAG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
34 31 0.89
35 4 0.11
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (34 bp):
CAGTGTGGGCCTAAGCCCATTATTGTAGCAATAT
Found at i:32425117 original size:54 final size:54
Alignment explanation
Indices: 32425059--32425172 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
32425049 ATTACTGAAA
* * *
32425059 TACCCTCAAATTGTAAAATTACCAAAGTACCCTCGATTTCTAGAATTACCGTTT
1 TACCCTCAAATTATAAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTT
* * * **** *
32425113 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCAAATTATAAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTT
32425167 TACCCT
1 TACCCT
32425173 TGATTTATAG
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.38
Consensus pattern (54 bp):
TACCCTCAAATTATAAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTT
Found at i:32425216 original size:27 final size:27
Alignment explanation
Indices: 32425086--32425205 Score: 195
Period size: 27 Copynumber: 4.4 Consensus size: 27
32425076 ATTACCAAAG
* *
32425086 TACCCTCGATTTCTAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
32425113 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
32425140 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
32425167 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
32425194 TACCCTCGATTT
1 TACCCTCGATTT
32425206 CCAAAATTAC
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.25, C:0.22, G:0.10, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:32425224 original size:27 final size:27
Alignment explanation
Indices: 32425194--32425440 Score: 232
Period size: 27 Copynumber: 9.2 Consensus size: 27
32425184 ATTACTGTTT
** *
32425194 TACCCTCGATTTCCAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
** **
32425221 TACCCTCGGCTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * **
32425248 TACCTTTGATGAGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * * *
32425275 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
32425301 TACCCTTGGTTTGTAAAATTA-CAGAAA
1 TACCCTCGATTTGTAAAATTACCA-AAA
*
32425328 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
32425355 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* * *
32425382 TACCACTAG-TTTGTGAAATTACCGAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
*
32425409 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
32425436 TACCC
1 TACCC
32425441 CTGATTTAAA
Statistics
Matches: 179, Mismatches: 34, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
26 26 0.15
27 150 0.84
28 3 0.02
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:32425225 original size:54 final size:54
Alignment explanation
Indices: 32425113--32425228 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
32425103 ATTACCGTTT
* * ***
32425113 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
* * *
32425167 TACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTCCAAAATTACTAAAA
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
32425221 TACCCTCG
1 TACCCTCG
32425229 GCTTACAAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
Found at i:32425241 original size:54 final size:54
Alignment explanation
Indices: 32425113--32425243 Score: 127
Period size: 54 Copynumber: 2.4 Consensus size: 54
32425103 ATTACCGTTT
* * * * * ***
32425113 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGACTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
* * * * * *
32425167 TACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTCCAAAATTACTAAAA
1 TACCCTCGACTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
*
32425221 TACCCTCGGCTTACAAAATTACC
1 TACCCTCGACTTACAAAATTACC
32425244 AAAATACCTT
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (54 bp):
TACCCTCGACTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
Found at i:32425241 original size:81 final size:81
Alignment explanation
Indices: 32425086--32425242 Score: 179
Period size: 81 Copynumber: 1.9 Consensus size: 81
32425076 ATTACCAAAG
* * * **** *
32425086 TACCCTCGATTTCTAGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGACT
* *
32425151 TATAGAATTACTATTT
66 TACAAAATTACTATTT
* * * * *
32425167 TACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTCCAAAATTACTAAAATACCCTCGGCT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGACT
32425232 TACAAAATTAC
66 TACAAAATTAC
32425243 CAAAATACCT
Statistics
Matches: 61, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGACT
TACAAAATTACTATTT
Found at i:32425266 original size:54 final size:51
Alignment explanation
Indices: 32425208--32425471 Score: 138
Period size: 54 Copynumber: 4.9 Consensus size: 51
32425198 CTCGATTTCC
* *
32425208 AAAATTACTAAAATACCCTCGGCTTACAAAATTACCAAAATACCTTTGATGAGT
1 AAAATTAC-AAAATACCCTCGACTT--AAAATTACCAAAATACCCTTGATGAGT
* * * * * **
32425262 AAAATTACCAAAATACCCTAGTCTGTAAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTA-CAAAATACCCTCGACT-TAAAATTACCAAAATACCCTTGATGAGT
* * * **
32425315 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACA-AAATACCCTCGA-CT-TAAAATTACCAAAATACCCTTGA-TGAGT
* ** * * ** **
32425369 AAAATTACCAAAATACCACTAGTTTGTGAAATTACCGAAATACCCTCAATTTGT
1 AAAATTA-CAAAATACC-CTCGACT-TAAAATTACCAAAATACCCTTGATGAGT
*
32425423 AAAATTACCAAAATACCC-CTGATTTAAAAAGTTA-CAGAAATACCCTTGA
1 AAAATTA-CAAAATACCCTC-GACTT-AAAA-TTACCA-AAATACCCTTGA
32425472 CTTTCTAAAA
Statistics
Matches: 169, Mismatches: 29, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
52 3 0.02
53 45 0.27
54 114 0.67
55 7 0.04
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (51 bp):
AAAATTACAAAATACCCTCGACTTAAAATTACCAAAATACCCTTGATGAGT
Found at i:32425401 original size:81 final size:81
Alignment explanation
Indices: 32425260--32425442 Score: 289
Period size: 81 Copynumber: 2.3 Consensus size: 81
32425250 CCTTTGATGA
* * *
32425260 GTAAAATTACCAAAATA-CCCTAGTCTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTACA
1 GTAAAATTACCAAAATACCCCTAGTCTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACA
32425324 GAAATACCCTCAATTT
66 GAAATACCCTCAATTT
* *
32425340 GTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCAC-TAGTTTGTGAAATTAC
1 GTAAAATTACCAAAATACCCCTAGTCTGTAAAATTACCAAAATACC-CTTAGTTTGTAAAATTAC
*
32425404 CGAAATACCCTCAATTT
65 AGAAATACCCTCAATTT
32425421 GTAAAATTACCAAAATACCCCT
1 GTAAAATTACCAAAATACCCCT
32425443 GATTTAAAAA
Statistics
Matches: 95, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
80 17 0.18
81 77 0.81
82 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
GTAAAATTACCAAAATACCCCTAGTCTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACA
GAAATACCCTCAATTT
Found at i:32425447 original size:27 final size:27
Alignment explanation
Indices: 32425235--32425481 Score: 197
Period size: 27 Copynumber: 9.1 Consensus size: 27
32425225 CTCGGCTTAC
** **
32425235 AAAATTACCAAAATACCTTTGATGAGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
32425262 AAAATTACCAAAATA-CCCT-AGTCTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
* * * *
32425288 AAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
32425315 AAAATTA-CAGAAATA-CCCTCAATTTGT
1 AAAATTACCA-AAATACCCCT-GATTTGT
32425342 AAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
*
32425369 AAAATTACCAAAATACCACT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
* * *
32425396 GAAATTACCGAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
*
32425423 AAAATTACCAAAATACCCCTGATTT-A
1 AAAATTACCAAAATACCCCTGATTTGT
* *
32425449 AAAAGTTA-CAGAAATACCCTTGACTTTCT
1 AAAA-TTACCA-AAATACCCCTGA-TTTGT
32425478 AAAA
1 AAAA
32425482 ATTATGGAAA
Statistics
Matches: 181, Mismatches: 24, Indels: 28
0.78 0.10 0.12
Matches are distributed among these distances:
25 1 0.01
26 32 0.18
27 130 0.72
28 14 0.08
29 4 0.02
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:32425464 original size:81 final size:81
Alignment explanation
Indices: 32425260--32425466 Score: 271
Period size: 81 Copynumber: 2.6 Consensus size: 81
32425250 CCTTTGATGA
* * * * *
32425260 GTAAAATTACCAAAATA-CCCTAGTCTGTAAAATTGCTAAAATACC-CTTGGTTTGTAAAATTAC
1 GTAAAATTACCAAAATACCCCTAGTTTGAAAAATTACCAAAATACCAC-TAGTTTGTAAAATTAC
32425323 AGAAATACCCTCAATTT
65 AGAAATACCCTCAATTT
* * *
32425340 GTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAGTTTGTGAAATTACC
1 GTAAAATTACCAAAATACCCCTAGTTTGAAAAATTACCAAAATACCACTAGTTTGTAAAATTACA
32425405 GAAATACCCTCAATTT
66 GAAATACCCTCAATTT
32425421 GTAAAATTACCAAAATACCCCT-GATTT-AAAAAGTTA-CAGAAATACC
1 GTAAAATTACCAAAATACCCCTAG-TTTGAAAAA-TTACCA-AAATACC
32425467 CTTGACTTTC
Statistics
Matches: 115, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
80 24 0.21
81 90 0.78
82 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (81 bp):
GTAAAATTACCAAAATACCCCTAGTTTGAAAAATTACCAAAATACCACTAGTTTGTAAAATTACA
GAAATACCCTCAATTT
Found at i:32425518 original size:27 final size:27
Alignment explanation
Indices: 32425479--32425530 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
32425469 TGACTTTCTA
32425479 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
32425506 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
32425531 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:32425613 original size:27 final size:27
Alignment explanation
Indices: 32425583--32425671 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
32425573 TACCCCTATT
*
32425583 AGGTAAAAAGATCGTAAAGCCCCTGTA
1 AGGTAAAAAGACCGTAAAGCCCCTGTA
*
32425610 AGGTAAAGAGACCGTAAAGCCCCTGTA
1 AGGTAAAAAGACCGTAAAGCCCCTGTA
* **
32425637 GGGTAAAGTGACCGTAATA-CCCCTGTA
1 AGGTAAAAAGACCGTAA-AGCCCCTGTA
*
32425664 CGGTAAAA
1 AGGTAAAA
32425672 TGACGAATAT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 54 0.98
28 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.25, T:0.18
Consensus pattern (27 bp):
AGGTAAAAAGACCGTAAAGCCCCTGTA
Found at i:32425683 original size:27 final size:27
Alignment explanation
Indices: 32425602--32425685 Score: 75
Period size: 27 Copynumber: 3.1 Consensus size: 27
32425592 GATCGTAAAG
* *
32425602 CCCCTGTAAGGTAAAGA-GACCGTAAA-G
1 CCCCTGTACGGTAAA-ATGACCG-AAATA
* * *
32425629 CCCCTGTAGGGTAAAGTGACCGTAATA
1 CCCCTGTACGGTAAAATGACCGAAATA
32425656 CCCCTGTACGGTAAAATGA-CGAATATA
1 CCCCTGTACGGTAAAATGACCGAA-ATA
32425683 CCC
1 CCC
32425686 TTATGTTCCG
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
26 5 0.11
27 42 0.89
ACGTcount: A:0.33, C:0.25, G:0.23, T:0.19
Consensus pattern (27 bp):
CCCCTGTACGGTAAAATGACCGAAATA
Found at i:32426505 original size:26 final size:26
Alignment explanation
Indices: 32426476--32426663 Score: 236
Period size: 26 Copynumber: 7.3 Consensus size: 26
32426466 GAGGAAGTGC
**
32426476 AAAAGGGCCTATGCCCCAGTTTATTG
1 AAAAGGGCCTATGCCCCAGTTTACCG
*
32426502 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCCTATGCCCCAGTTTACCG
* * **
32426528 AACAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCCTATGCCCCAGTTTACCG
*
32426554 AAAAGGG-CTTTGCCCCAGTTTACCG
1 AAAAGGGCCTATGCCCCAGTTTACCG
*
32426579 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCCTATGCCCCAGTTTACCG
* * **
32426605 AACAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCCTATGCCCCAGTTTACCG
*
32426631 AAAAGGG-CTTTGCCCCAGTTTACCG
1 AAAAGGGCCTATGCCCCAGTTTACCG
32426656 AAAAGGGC
1 AAAAGGGC
32426664 TTTGCCCTAG
Statistics
Matches: 139, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
25 42 0.30
26 97 0.70
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (26 bp):
AAAAGGGCCTATGCCCCAGTTTACCG
Found at i:32426582 original size:77 final size:77
Alignment explanation
Indices: 32426476--32426675 Score: 348
Period size: 77 Copynumber: 2.6 Consensus size: 77
32426466 GAGGAAGTGC
* **
32426476 AAAAGGGCCTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAACAGGGCTTATG
1 AAAAGGG-CTTTGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCGAACAGGGCTTATG
32426541 CCCCAGTTTATTG
65 CCCCAGTTTATTG
32426554 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCGAACAGGGCTTATGC
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCGAACAGGGCTTATGC
32426619 CCCAGTTTATTG
66 CCCAGTTTATTG
*
32426631 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTT-TGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTT
32426676 ATTAAAAGAG
Statistics
Matches: 118, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
76 9 0.08
77 102 0.86
78 7 0.06
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (77 bp):
AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCGAACAGGGCTTATGC
CCCAGTTTATTG
Found at i:32426589 original size:51 final size:52
Alignment explanation
Indices: 32426476--32426675 Score: 289
Period size: 51 Copynumber: 3.9 Consensus size: 52
32426466 GAGGAAGTGC
* **
32426476 AAAAGGGCCTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCG
* **
32426528 AACAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCG
* **
32426579 AAAAGGGCTTATGCCCCAGTTTACCGAACAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCG
*
32426631 AAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGCTT-TGCCCTAGTT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTT
32426676 ATTAAAAGAG
Statistics
Matches: 137, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
50 9 0.07
51 71 0.52
52 57 0.42
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:32426880 original size:42 final size:42
Alignment explanation
Indices: 32426821--32426912 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
32426811 TAGTCTCCCC
* * *
32426821 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGGCATTACATGTGATATTG
32426863 AAATGGGCTTGCATACATCCATTGGCATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGGCATTACATGTGATATTG
32426905 AAATGGGC
1 AAATGGGC
32426913 CTAAGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGGCATTACATGTGATATTG
Found at i:32426971 original size:31 final size:31
Alignment explanation
Indices: 32426936--32426999 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
32426926 CATTTACAGT
32426936 AAAGGCTTCGGCCCCA-TGATATGATTTATGA
1 AAAGGCTTCGG-CCCAGTGATATGATTTATGA
32426967 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
32426998 AA
1 AA
32427000 TGTGACACCC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 4 0.12
31 28 0.88
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:32427868 original size:17 final size:18
Alignment explanation
Indices: 32427826--32427874 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
32427816 AGTTGAAAAG
32427826 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
32427845 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
32427862 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
32427875 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:32428760 original size:40 final size:40
Alignment explanation
Indices: 32428694--32428860 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
32428684 AAATTGAATG
* * *
32428694 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
32428733 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
32428773 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
32428813 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
32428853 ATATCCGG
1 ATATCCGG
32428861 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:32434903 original size:17 final size:18
Alignment explanation
Indices: 32434861--32434909 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
32434851 AGTTGAAAAG
32434861 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
32434880 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
32434897 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
32434910 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:32435796 original size:40 final size:40
Alignment explanation
Indices: 32435730--32435896 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
32435720 AAATTGAATG
* * *
32435730 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
32435769 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
32435809 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
32435849 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
32435889 ATATCCGG
1 ATATCCGG
32435897 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:32445685 original size:16 final size:17
Alignment explanation
Indices: 32445659--32445709 Score: 59
Period size: 16 Copynumber: 2.9 Consensus size: 17
32445649 AAATAAGAAA
32445659 TAATAATTATAATAATT
1 TAATAATTATAATAATT
*
32445676 TAATAA-TATAATAATA
1 TAATAATTATAATAATT
*
32445692 TATATATGTTATAATAAT
1 TA-ATA-ATTATAATAAT
32445710 AATAGAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 11 0.38
17 9 0.31
19 9 0.31
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (17 bp):
TAATAATTATAATAATT
Found at i:32445691 original size:8 final size:8
Alignment explanation
Indices: 32445658--32445693 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
32445648 TAAATAAGAA
32445658 ATAATAATT
1 ATAATAA-T
32445667 ATAATAAT
1 ATAATAAT
*
32445675 TTAATAAT
1 ATAATAAT
32445683 ATAATAAT
1 ATAATAAT
32445691 ATA
1 ATA
32445694 TATATGTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
8 18 0.72
9 7 0.28
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (8 bp):
ATAATAAT
Found at i:32445711 original size:25 final size:23
Alignment explanation
Indices: 32445657--32445713 Score: 64
Period size: 22 Copynumber: 2.4 Consensus size: 23
32445647 TTAAATAAGA
*
32445657 AATAATAATTATAATAATTTAAT
1 AATAATAATAATAATAATTTAAT
32445680 AAT-ATAATAATATATATATGTT-AT
1 AATAATAATAATA-ATA-AT-TTAAT
32445704 AATAATAATA
1 AATAATAATA
32445714 GAATAAAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
22 8 0.28
23 6 0.21
24 7 0.24
25 8 0.28
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (23 bp):
AATAATAATAATAATAATTTAAT
Found at i:32449860 original size:108 final size:110
Alignment explanation
Indices: 32449716--32449913 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
32449706 ATCCTTTTGA
* *
32449716 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
32449779 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
32449824 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
*
32449889 TGCCATTCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
32449914 CGGTATCCTT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.60
109 7 0.09
110 24 0.30
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:32449923 original size:55 final size:53
Alignment explanation
Indices: 32449669--32449923 Score: 233
Period size: 55 Copynumber: 4.8 Consensus size: 53
32449659 ACAGGGGTAC
* *
32449669 CTTACC-ATTGCCATGACTTGTCATGGTCTTACATGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCAT-TCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
*
32449718 CTTACC-ATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATTGCCAT-TCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * * *
32449771 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATTGCCAT-TCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAA
* * *
32449826 CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCAATTGCCAT-TCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
32449879 CCTTACCAATTGCCATTCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAATTGCCATT-CTTGACATGGTCTTACATGGTATCCTT
32449924 AAACCCTAAT
Statistics
Matches: 172, Mismatches: 20, Indels: 22
0.80 0.09 0.10
Matches are distributed among these distances:
49 40 0.23
52 4 0.02
53 44 0.26
54 13 0.08
55 69 0.40
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATTGCCATTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:32457530 original size:20 final size:20
Alignment explanation
Indices: 32457484--32457530 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
32457474 GGCCTGGCCC
*
32457484 CACGGGCATGTCCCAAGCGA
1 CACGGGCATGTCCCAAGCCA
*
32457504 CACGGGCATGTCCCAGGCCA
1 CACGGGCATGTCCCAAGCCA
*
32457524 CATGGGC
1 CACGGGC
32457531 GTGTACCCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.21, C:0.36, G:0.32, T:0.11
Consensus pattern (20 bp):
CACGGGCATGTCCCAAGCCA
Found at i:32459241 original size:20 final size:20
Alignment explanation
Indices: 32459216--32459265 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
32459206 AGGGACTAAA
* *
32459216 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
32459236 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
32459256 ATGAATAAAT
1 ATGAA-AAAT
32459266 GTGCTATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.50, C:0.02, G:0.12, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:32462214 original size:43 final size:42
Alignment explanation
Indices: 32462075--32462215 Score: 128
Period size: 43 Copynumber: 3.3 Consensus size: 42
32462065 ATGCCAACGC
*
32462075 CCCAGACGTGGTCTTACATGCT-ATCACATATCGATGCCACTAT
1 CCCAGACGTGGTCTTACACG-TAATCACATATCGATGCCAC-AT
* * * * **
32462118 CCCATATAG-GGTCTTACACG-AATTAAATA-CGATGCCGATGT
1 CCCAGA-CGTGGTCTTACACGTAATCACATATCGATGCC-ACAT
* *
32462159 CCTAGACATGGTCTTACACGTAATCACATATCGATGCCTACAT
1 CCCAGACGTGGTCTTACACGTAATCACATATCGATGCC-ACAT
32462202 CCCAGACGTGGTCT
1 CCCAGACGTGGTCT
32462216 ACATGAAAAC
Statistics
Matches: 74, Mismatches: 18, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
41 23 0.31
42 14 0.19
43 36 0.49
44 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (42 bp):
CCCAGACGTGGTCTTACACGTAATCACATATCGATGCCACAT
Found at i:32466127 original size:27 final size:28
Alignment explanation
Indices: 32466097--32466166 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
32466087 ATAGTGAGTC
32466097 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
32466124 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
32466152 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32466167 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32468569 original size:14 final size:14
Alignment explanation
Indices: 32468552--32468578 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32468542 TCACAAAAAT
32468552 TTCACACATATAAG
1 TTCACACATATAAG
32468566 TTCACACATATAA
1 TTCACACATATAA
32468579 ACACTAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.22, G:0.04, T:0.30
Consensus pattern (14 bp):
TTCACACATATAAG
Found at i:32470962 original size:30 final size:30
Alignment explanation
Indices: 32470928--32470989 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
32470918 CCTCCTTAAC
32470928 ATAAAATGGTTTCTCCCAATTAAGGACAAG
1 ATAAAATGGTTTCTCCCAATTAAGGACAAG
*
32470958 ATAAAATGGTTTCTTCCAATTAAGGACAAG
1 ATAAAATGGTTTCTCCCAATTAAGGACAAG
32470988 AT
1 AT
32470990 TCATCCCCTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (30 bp):
ATAAAATGGTTTCTCCCAATTAAGGACAAG
Found at i:32472378 original size:37 final size:37
Alignment explanation
Indices: 32472325--32472462 Score: 222
Period size: 37 Copynumber: 3.7 Consensus size: 37
32472315 CGAATAGTCC
* *
32472325 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
* *
32472362 CCACACATAGTCATCGGGTCTTACCAGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
* *
32472399 CCACACGTAGTCATCGAGTCTTACCCAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
32472436 CCACACGTAGTCATCGGGTCTTACCCG
1 CCACACGTAGTCATCGGGTCTTACCCG
32472463 AAATATATTT
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 91 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:32472663 original size:48 final size:48
Alignment explanation
Indices: 32472605--32473003 Score: 690
Period size: 48 Copynumber: 8.3 Consensus size: 48
32472595 ATATACACAC
*
32472605 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
32472653 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
32472701 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
32472749 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
32472797 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
32472845 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
32472893 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
** *
32472941 ATCTCATATGTATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
32472989 ATCTCATATATATTT
1 ATCTCATACATATTT
32473004 ATCTTGTACA
Statistics
Matches: 338, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 338 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:32478219 original size:22 final size:23
Alignment explanation
Indices: 32478193--32478274 Score: 94
Period size: 23 Copynumber: 3.6 Consensus size: 23
32478183 CTAAGCTAAT
32478193 AAACAGTAAGCTCTATTGAGCT-
1 AAACAGTAAGCTCTATTGAGCTG
* *
32478215 AAACAGTAAGCTCTTTTCAGCTG
1 AAACAGTAAGCTCTATTGAGCTG
* * * *
32478238 AATCGGTAAGCTCCAATGAGCTG
1 AAACAGTAAGCTCTATTGAGCTG
*
32478261 AAACAGTAGGCTCT
1 AAACAGTAAGCTCT
32478275 TATGAGTTGT
Statistics
Matches: 47, Mismatches: 12, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
22 20 0.43
23 27 0.57
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (23 bp):
AAACAGTAAGCTCTATTGAGCTG
Found at i:32481300 original size:79 final size:82
Alignment explanation
Indices: 32481160--32481344 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
32481150 TCGAATGATG
* * *
32481160 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
32481224 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
32481240 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
32481302 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
32481320 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32481345 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:32481352 original size:40 final size:40
Alignment explanation
Indices: 32481161--32481352 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
32481151 CGAATGATGT
* * * * *
32481161 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
32481201 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
32481241 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
32481280 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
32481320 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
32481353 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:32481375 original size:79 final size:79
Alignment explanation
Indices: 32481160--32481377 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
32481150 TCGAATGATG
* * * * ** *
32481160 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
32481223 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
32481240 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
32481305 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
32481320 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
32481378 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:32489256 original size:79 final size:82
Alignment explanation
Indices: 32489116--32489300 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
32489106 TCGAATGATG
* * *
32489116 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
32489180 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
32489196 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
32489258 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
32489276 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32489301 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:32489308 original size:40 final size:40
Alignment explanation
Indices: 32489117--32489308 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
32489107 CGAATGATGT
* * * * *
32489117 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
32489157 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
32489197 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
32489236 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
32489276 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
32489309 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:32489331 original size:79 final size:79
Alignment explanation
Indices: 32489116--32489333 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
32489106 TCGAATGATG
* * * * ** *
32489116 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
32489179 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
32489196 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
32489261 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
32489276 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
32489334 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:32494448 original size:80 final size:80
Alignment explanation
Indices: 32494300--32494451 Score: 261
Period size: 80 Copynumber: 1.9 Consensus size: 80
32494290 GAGAATTGAG
*
32494300 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGGTCCG
32494365 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* *
32494380 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCTGGGCT-AGGTCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGGTCC-
32494444 GAAGAGCA
65 GAAGAGCA
32494452 ATCATGCTGG
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
79 5 0.07
80 63 0.93
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (80 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGGTCCG
AAGAGCATTCGTGCT
Found at i:32494451 original size:40 final size:40
Alignment explanation
Indices: 32494300--32494430 Score: 262
Period size: 40 Copynumber: 3.3 Consensus size: 40
32494290 GAGAATTGAG
32494300 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32494340 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32494380 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32494420 AGTGATGTATC
1 AGTGATGTATC
32494431 TGGGCTAGGT
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:32495288 original size:40 final size:40
Alignment explanation
Indices: 32495194--32495334 Score: 144
Period size: 40 Copynumber: 3.5 Consensus size: 40
32495184 TTCGAATGGT
* * * * *
32495194 ATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGC-GAGTCACTAA
* *
32495235 ATCTGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCT-AATTCCCGAAGGCATTTGTGCGAGTCACTAA
* *
32495275 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATA
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTCACTA-A
32495316 A-CCGGGCT-ATATCCCGAAG
1 ATCCGGGCTAAT-TCCCGAAG
32495335 ACAATCGAGC
Statistics
Matches: 86, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
39 2 0.02
40 57 0.66
41 27 0.31
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTCACTAA
Found at i:32495355 original size:40 final size:40
Alignment explanation
Indices: 32495277--32495360 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
32495267 GTTACTAAAT
* * *
32495277 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
32495317 CCGGGCT-ATATCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
32495357 CCGG
1 CCGG
32495361 TTAAATTCTG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:32498149 original size:49 final size:49
Alignment explanation
Indices: 32498077--32498631 Score: 788
Period size: 49 Copynumber: 11.5 Consensus size: 49
32498067 GTATGAGATA
*
32498077 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
32498126 TATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTATG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
32498175 TATATATGTGATAAGGCCGAGTGGCCGATGTGATGAATTTGAAAGTATG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
32498224 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
*
32498273 TATATATGTGATAAGGCCGAGTGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
32498322 TATATATGTGATAAGACCGAGTGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
32498369 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
32498416 CATATGTGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
32498465 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
32498512 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
32498559 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
32498606 TATATATGTGATAAAGCCTAATGGCC
1 TATATATGTGATAAGGCCGAATGGCC
32498632 TATCTAAAAT
Statistics
Matches: 467, Mismatches: 37, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
47 196 0.42
49 271 0.58
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:32498467 original size:143 final size:143
Alignment explanation
Indices: 32498077--32498619 Score: 865
Period size: 143 Copynumber: 3.8 Consensus size: 143
32498067 GTATGAGATA
* *
32498077 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAA--GTGTATATATGTGATAAGG
* * * *
32498142 CCTAATGGCCGATGTAATGAATGTGAAAGTATGTATATATGTGATAAGGCCGAGTGGCCGATGTG
64 CCGAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCGAGTGGCCAATGTG
*
32498207 ATGAATTTGAAAGTATG
129 ATGAATGTGAAAG--TG
* * * *
32498224 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATGTATATATGTGATAAGG
1 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAG--TGTATATATGTGATAAGG
* *
32498289 CCGAGTGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGACCGAGTGGCCAATGTG
64 CCGAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCGAGTGGCCAATGTG
32498354 ATGAATGTGAAAGTG
129 ATGAATGTGAAAGTG
* *
32498369 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAGTGCATATGTGTGATAAGGCC
1 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
32498434 GAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGAT
66 GAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGAT
32498499 GAATGTGAAAGTG
131 GAATGTGAAAGTG
32498512 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
32498577 GAGTGGCCAATGTGATGAATGTGAAA--GTGTATATATGTGATAA
66 GAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
32498620 AGCCTAATGG
Statistics
Matches: 372, Mismatches: 22, Indels: 10
0.92 0.05 0.02
Matches are distributed among these distances:
141 17 0.05
143 181 0.49
145 44 0.12
147 130 0.35
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
GAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGAT
GAATGTGAAAGTG
Found at i:32498520 original size:25 final size:25
Alignment explanation
Indices: 32498492--32498617 Score: 77
Period size: 25 Copynumber: 5.3 Consensus size: 25
32498482 CGAGTGGCCA
32498492 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
32498517 ATGTGAT-AAAGCCTAA-TG-GCCC
1 ATGTGATGAATGTGAAAGTGTATAT
32498539 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
** ***
32498564 ATGTGAT-AA-G-GCCGAGTGGCCA-
1 ATGTGATGAATGTG-AAAGTGTATAT
32498586 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
32498611 ATGTGAT
1 ATGTGAT
32498618 AAAGCCTAAT
Statistics
Matches: 67, Mismatches: 26, Indels: 16
0.61 0.24 0.15
Matches are distributed among these distances:
22 15 0.22
23 15 0.22
24 15 0.22
25 22 0.33
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:32500529 original size:29 final size:29
Alignment explanation
Indices: 32500467--32500569 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
32500457 GTGACGAGAT
* * *
32500467 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
32500496 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * **
32500525 TGGCACTATGTGTGCGGGCTT-GAATCACG
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
32500554 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32500570 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:32509830 original size:40 final size:40
Alignment explanation
Indices: 32509745--32509895 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
32509735 AATTGAATGA
* * * *
32509745 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
32509785 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
32509826 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
32509865 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
32509896 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:32509909 original size:40 final size:40
Alignment explanation
Indices: 32509782--32509911 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
32509772 ATGCTGGAAA
* * *
32509782 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
32509822 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
32509862 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
32509902 TTATATCCGG
1 TTATATCCGG
32509912 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:32509910 original size:80 final size:80
Alignment explanation
Indices: 32509744--32509911 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
32509734 AAATTGAATG
* *
32509744 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
32509809 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
32509824 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
32509887 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
32509904 ATATCCGG
1 ATATCCGG
32509912 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:32514598 original size:41 final size:41
Alignment explanation
Indices: 32514553--32514670 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
32514543 TGAAAGATAA
32514553 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
32514594 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32514624 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32514665 ATGTAG
1 ATGTAG
32514671 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:32514609 original size:71 final size:71
Alignment explanation
Indices: 32514521--32514684 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
32514511 GAGATGTATC
32514521 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32514586 AGGACA
66 AGGACA
32514592 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32514657 AGGACA
66 AGGACA
32514663 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
32514685 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:32520593 original size:40 final size:40
Alignment explanation
Indices: 32520508--32520658 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
32520498 AATTGAATGA
* * * *
32520508 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
32520548 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
32520589 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
32520628 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
32520659 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:32520672 original size:40 final size:40
Alignment explanation
Indices: 32520545--32520674 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
32520535 ATGCTGGAAA
* * *
32520545 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
32520585 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
32520625 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
32520665 TTATATCCGG
1 TTATATCCGG
32520675 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:32520673 original size:80 final size:80
Alignment explanation
Indices: 32520507--32520674 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
32520497 AAATTGAATG
* *
32520507 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
32520572 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
32520587 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
32520650 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
32520667 ATATCCGG
1 ATATCCGG
32520675 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:32535058 original size:27 final size:26
Alignment explanation
Indices: 32534983--32535068 Score: 118
Period size: 26 Copynumber: 3.2 Consensus size: 26
32534973 CAGAAAGAGT
*
32534983 ATCAGGTGGGCCTTAGCCCAATAACAGA
1 ATCAGGTGGGCCTAAG-CCAAT-ACAGA
32535011 ATCAGGTGGGCCTAAGCCAATACAGA
1 ATCAGGTGGGCCTAAGCCAATACAGA
* *
32535037 ATCAAGTGGGCCTAAGCTCAATACAAA
1 ATCAGGTGGGCCTAAGC-CAATACAGA
32535064 ATCAG
1 ATCAG
32535069 TATCAGATGT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 21 0.40
27 17 0.32
28 15 0.28
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
ATCAGGTGGGCCTAAGCCAATACAGA
Found at i:32537538 original size:49 final size:49
Alignment explanation
Indices: 32537400--32537714 Score: 549
Period size: 49 Copynumber: 6.4 Consensus size: 49
32537390 TATCAAAATT
32537400 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
32537449 TGTGAAAATGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAATG--TATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
* *
32537500 TGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
*
32537549 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
*
32537598 TGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
* *
32537647 TGTGAAAGTGTATACATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
*
32537696 TGTGAAAGTGTATATATAT
1 TGTGAAAATGTATATATAT
32537715 ATGTGGTAAA
Statistics
Matches: 257, Mismatches: 7, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
49 208 0.81
51 49 0.19
ACGTcount: A:0.35, C:0.10, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
Found at i:32537847 original size:37 final size:37
Alignment explanation
Indices: 32537797--32537869 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
32537787 TTCCAGGTGA
32537797 GACCCGATGACTACGTGTGGAGATTACGTCCGGGTAC
1 GACCCGATGACTACGTGTGGAGATTACGTCCGGGTAC
*
32537834 GACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 GACCCGATGACTACGTGTGGAGATTACGTCCGGGTA
32537870 AGACTTCATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.23
Consensus pattern (37 bp):
GACCCGATGACTACGTGTGGAGATTACGTCCGGGTAC
Found at i:32539965 original size:19 final size:19
Alignment explanation
Indices: 32539930--32539967 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32539920 GTGTGGGGCC
*
32539930 CACGAGCCCATTGGGCCCA
1 CACGAGCCCATTAGGCCCA
32539949 CACG-GCCCATCTAGGCCCA
1 CACGAGCCCAT-TAGGCCCA
32539968 ACGTGGCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.21, C:0.45, G:0.24, T:0.11
Consensus pattern (19 bp):
CACGAGCCCATTAGGCCCA
Found at i:32545001 original size:52 final size:52
Alignment explanation
Indices: 32544935--32545038 Score: 181
Period size: 52 Copynumber: 2.0 Consensus size: 52
32544925 TCACTAGGAA
32544935 CTCGTAATGACCATAACGAGTCCTAAACACTGTCTTATAAACATCAGTCTCC
1 CTCGTAATGACCATAACGAGTCCTAAACACTGTCTTATAAACATCAGTCTCC
* * *
32544987 CTCGTAATGACCATAACGAGTCTTAAACATTGTTTTATAAACATCAGTCTCC
1 CTCGTAATGACCATAACGAGTCCTAAACACTGTCTTATAAACATCAGTCTCC
32545039 TTGACCCTCA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.30
Consensus pattern (52 bp):
CTCGTAATGACCATAACGAGTCCTAAACACTGTCTTATAAACATCAGTCTCC
Found at i:32549611 original size:29 final size:29
Alignment explanation
Indices: 32549578--32549708 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
32549568 TGACGAGATC
*
32549578 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
32549607 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
32549636 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
32549665 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
32549694 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
32549709 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:32552833 original size:49 final size:49
Alignment explanation
Indices: 32552774--32552872 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
32552764 AGAAAGTAGG
32552774 AAAGAAAAGAAGGGGTTCTGCTAGAGCAAATTGAATTGAGAAGAAGAAA
1 AAAGAAAAGAAGGGGTTCTGCTAGAGCAAATTGAATTGAGAAGAAGAAA
32552823 AAAGAAAAGAAGGGGTTCTGCTAGAGCAAATTGAATTGAGAAGAAGAAA
1 AAAGAAAAGAAGGGGTTCTGCTAGAGCAAATTGAATTGAGAAGAAGAAA
32552872 A
1 A
32552873 GAACTAATGG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.49, C:0.06, G:0.28, T:0.16
Consensus pattern (49 bp):
AAAGAAAAGAAGGGGTTCTGCTAGAGCAAATTGAATTGAGAAGAAGAAA
Found at i:32555083 original size:12 final size:12
Alignment explanation
Indices: 32555068--32555098 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
32555058 GAAGACACGC
32555068 CCGTGTACCAAA
1 CCGTGTACCAAA
32555080 CCGTGTACCAAA
1 CCGTGTACCAAA
*
32555092 CAGTGTA
1 CCGTGTA
32555099 AAATCTAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.19
Consensus pattern (12 bp):
CCGTGTACCAAA
Found at i:32565781 original size:43 final size:43
Alignment explanation
Indices: 32565720--32565886 Score: 273
Period size: 43 Copynumber: 3.9 Consensus size: 43
32565710 ACATATCATT
* *
32565720 TCACCGGCATTACGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
32565763 TCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
32565806 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
32565849 TTACCGGCACTAAGCCTGCTA-GCACGAAGGCCTGAATA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
32565887 TAATACTAGC
Statistics
Matches: 116, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
42 16 0.14
43 100 0.86
ACGTcount: A:0.30, C:0.34, G:0.23, T:0.13
Consensus pattern (43 bp):
TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:32565944 original size:38 final size:38
Alignment explanation
Indices: 32565884--32565958 Score: 96
Period size: 38 Copynumber: 2.0 Consensus size: 38
32565874 GAAGGCCTGA
* * * * *
32565884 ATATAATACTAGCACTAGGCCTGTGAGATTTATCCCGG
1 ATATAATACCAGCACAAAGCCTGCGAGATTTAACCCGG
*
32565922 ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCG
1 ATATAATACCAGCACAAAGCCTGCGAGATTTAACCCG
32565959 AATACACATC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (38 bp):
ATATAATACCAGCACAAAGCCTGCGAGATTTAACCCGG
Found at i:32580120 original size:27 final size:28
Alignment explanation
Indices: 32580090--32580145 Score: 105
Period size: 27 Copynumber: 2.0 Consensus size: 28
32580080 TAGAGGTATA
32580090 TCGGTAATTTTGCTCTTTA-GGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
32580117 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
32580145 T
1 T
32580146 GTGATCTACG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 19 0.68
28 9 0.32
ACGTcount: A:0.18, C:0.11, G:0.23, T:0.48
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAGGGGTAATT
Found at i:32580797 original size:27 final size:27
Alignment explanation
Indices: 32580767--32580828 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
32580757 GGGCAAAATG
32580767 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
32580794 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
32580821 GTAATTTT
1 GTAATTTT
32580829 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:32580842 original size:54 final size:54
Alignment explanation
Indices: 32580784--32580934 Score: 151
Period size: 54 Copynumber: 2.8 Consensus size: 54
32580774 TACCCCACAA
** * * *
32580784 GGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAACCAT
1 GGGTATTTCAGTAATTTTA-CAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** * *
32580838 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** * * * *
32580892 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATT
32580935 CTGTAAATTG
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
53 2 0.02
54 82 0.98
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:32580900 original size:81 final size:81
Alignment explanation
Indices: 32580782--32580934 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
32580772 TTTACCCCAC
** *
32580782 AAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTT-TCAAACCATGGGTATTT
1 AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTAT-AAACCAAGGGTATTT
32580846 TGGTAATTTTATAAACA
65 TGGTAATTTTATAAACA
* * *
32580863 AAGGGTATTTTAGTAATTTTA-CAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTT
1 AAGGGTATTTCAGTAATTTTACCAAAC-AGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTT
32580927 TGGTAATT
65 TGGTAATT
32580935 CTGTAAATTG
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 3 0.05
81 60 0.94
82 1 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTTT
GGTAATTTTATAAACA
Found at i:32580950 original size:27 final size:27
Alignment explanation
Indices: 32580811--32580934 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
32580801 TACCCTACAG
* *
32580811 GGGTATTTTAGTAATTTT-TCAAACCAT
1 GGGTATTTTGGTAATTTTAT-AAACCAA
*
32580838 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * *
32580865 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
32580892 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
32580919 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
32580935 CTGTAAATTG
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
27 82 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.20, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:32580950 original size:54 final size:54
Alignment explanation
Indices: 32580811--32580936 Score: 180
Period size: 54 Copynumber: 2.3 Consensus size: 54
32580801 TACCCTACAG
* * * *
32580811 GGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTCTACAAACTAGGGGTATTTTGGTAATTTTATAAACAAA
* * *
32580865 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTCTACAAACTAGGGGTATTTTGGTAATTTTATAAACAAA
*
32580919 GGGTATTTTGGTAATTCT
1 GGGTATTTTAGTAATTCT
32580937 GTAAATTGAG
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (54 bp):
GGGTATTTTAGTAATTCTACAAACTAGGGGTATTTTGGTAATTTTATAAACAAA
Found at i:32582166 original size:23 final size:23
Alignment explanation
Indices: 32582137--32582180 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
32582127 AATACATGAA
32582137 AAATGATGAT-ACATGATATATAG
1 AAATGAT-ATCACATGATATATAG
*
32582160 AAATGATATCACTTGATATAT
1 AAATGATATCACATGATATAT
32582181 TGAAGCATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (23 bp):
AAATGATATCACATGATATATAG
Found at i:32585380 original size:40 final size:39
Alignment explanation
Indices: 32585216--32585398 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
32585206 AAATTGAATG
* *
32585216 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
32585255 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
32585295 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
32585335 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
32585374 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
32585399 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 25, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 21 0.19
40 84 0.74
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:32585423 original size:80 final size:81
Alignment explanation
Indices: 32585255--32585443 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
32585245 TGCTGAAATT
* * * *
32585255 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
32585320 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
32585336 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
32585399 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
32585415 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
32585444 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:32587819 original size:49 final size:49
Alignment explanation
Indices: 32587699--32587871 Score: 231
Period size: 49 Copynumber: 3.5 Consensus size: 49
32587689 TGAGGTCGCA
** **
32587699 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT-GGTCACG
* * *
32587749 TGTGTAGTACTAAGCG-TGGCTACTATGTGTATCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCACG
* * *
32587797 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCACG
*
32587846 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
32587872 TGCGTACCAG
Statistics
Matches: 108, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
48 22 0.20
49 71 0.66
50 15 0.14
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCACG
Found at i:32587879 original size:49 final size:49
Alignment explanation
Indices: 32587692--32587884 Score: 217
Period size: 49 Copynumber: 3.9 Consensus size: 49
32587682 TCTATTGTGA
* * * **
32587692 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
32587741 AGGTCACGTGTGTAGTACTAAGCG-TGGCTACTATGTGTATCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
32587790 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
32587839 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
32587885 GCTTTGGCTA
Statistics
Matches: 123, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
48 22 0.18
49 81 0.66
50 20 0.16
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:32591304 original size:16 final size:16
Alignment explanation
Indices: 32591260--32591306 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
32591250 GAGGAATGTG
*
32591260 TAAAAAAACAT-AAATA
1 TAAATAAACATGAAA-A
*
32591276 TAAATAGACATGAAAA
1 TAAATAAACATGAAAA
*
32591292 TAAATAAAGATGAAA
1 TAAATAAACATGAAA
32591307 TAAGGATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
16 23 0.88
17 3 0.12
ACGTcount: A:0.68, C:0.04, G:0.09, T:0.19
Consensus pattern (16 bp):
TAAATAAACATGAAAA
Found at i:32591889 original size:23 final size:22
Alignment explanation
Indices: 32591841--32591889 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 22
32591831 AGGAATCCCC
*
32591841 CATTTTTTTGTACAAAATCAAA
1 CATTTTTTTGTAAAAAATCAAA
32591863 -ATTTTCTTT-TAAAAAATCACAA
1 CATTTT-TTTGTAAAAAATCA-AA
32591885 CATTT
1 CATTT
32591890 CTTAAATATC
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
21 14 0.61
22 5 0.22
23 4 0.17
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.43
Consensus pattern (22 bp):
CATTTTTTTGTAAAAAATCAAA
Found at i:32592830 original size:14 final size:14
Alignment explanation
Indices: 32592811--32592838 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32592801 TTTTGTGTTC
32592811 TTATCAAAAATTTA
1 TTATCAAAAATTTA
32592825 TTATCAAAAATTTA
1 TTATCAAAAATTTA
32592839 GAATGTCTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
TTATCAAAAATTTA
Found at i:32598407 original size:32 final size:31
Alignment explanation
Indices: 32598371--32598441 Score: 124
Period size: 32 Copynumber: 2.3 Consensus size: 31
32598361 AAGAGAATAC
32598371 ATCTTTCATAAACTCAAAATGAATATTAACGT
1 ATCTTTCATAAACTCAAAATGAATATTAAC-T
32598403 ATCTTTCATAAACTCAAAATGAATATTAACT
1 ATCTTTCATAAACTCAAAATGAATATTAACT
*
32598434 ATCATTCA
1 ATCTTTCA
32598442 AAGCTTAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 8 0.21
32 30 0.79
ACGTcount: A:0.44, C:0.17, G:0.04, T:0.35
Consensus pattern (31 bp):
ATCTTTCATAAACTCAAAATGAATATTAACT
Found at i:32599027 original size:46 final size:47
Alignment explanation
Indices: 32598952--32599170 Score: 200
Period size: 46 Copynumber: 4.7 Consensus size: 47
32598942 GTAAGGTGCT
* *
32598952 GATGCCATGTCCCAGTCATGGTCTTACACT-GACTATCATCTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCTCATCTCGTAGGCC
* * *
32599000 GATACATGTCCCAGACATGTCTTACACTAGCT-TACGTCTTG-AGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGTAGGCC
* * * *
32599046 GATGCTTGTCCCAGACATGTCTTACACTAGCTCTCGTCTC-AATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGTAGGCC
* * *
32599092 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GT-GCCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGTAGGCC
* *
32599140 GATGCATGTCCTAGACATGTTTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
32599171 CAGCAATAAT
Statistics
Matches: 144, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
45 2 0.01
46 74 0.51
47 41 0.28
48 26 0.18
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGTAGGCC
Found at i:32604450 original size:24 final size:24
Alignment explanation
Indices: 32604422--32604482 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
32604412 AACCGTATTT
* * *
32604422 GCACACATAGTGCTA-ATTACACTC
1 GCACACATAGTGCCATAGTAAAC-C
32604446 GCACACATAGTGCCATAGTAAACC
1 GCACACATAGTGCCATAGTAAACC
32604470 GCACACATAGTGC
1 GCACACATAGTGC
32604483 ATTGGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.20
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAACC
Found at i:32612563 original size:24 final size:24
Alignment explanation
Indices: 32612535--32612595 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
32612525 AACCGTATTT
* * *
32612535 GCACACATAGTGCTA-ATTACACTC
1 GCACACATAGTGCCATAGTAAAC-C
32612559 GCACACATAGTGCCATAGTAAACC
1 GCACACATAGTGCCATAGTAAACC
32612583 GCACACATAGTGC
1 GCACACATAGTGC
32612596 ATTGGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.20
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAACC
Found at i:32618737 original size:47 final size:47
Alignment explanation
Indices: 32618622--32619209 Score: 845
Period size: 47 Copynumber: 12.3 Consensus size: 47
32618612 ATGAGATATA
*
32618622 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA--GTG
*
32618671 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
* *
32618718 TATATATGTGATAAAGCCTAATGGCC-ATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
* *
32618764 CATATGTGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTATG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAG--TG
*
32618813 TATATATGTGATAAGGCCGAGTGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA--GTG
*
32618862 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAG--TG
*
32618911 TATATATGTGATAAGGCCGAGTGGCCGATGTGATGAATGTGAAAGTATG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAG--TG
* * *
32618960 TATATATGTGATAAGGCCGAGTGGCCAATGTTATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
* * *
32619007 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
* *
32619054 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
* * *
32619101 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
* * * * *
32619148 CATATGTGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
*
32619195 TATAAATGTGATAAG
1 TATATATGTGATAAG
32619210 TCCCGAAGGG
Statistics
Matches: 495, Mismatches: 37, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
46 42 0.08
47 229 0.46
49 223 0.45
51 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:32619109 original size:25 final size:25
Alignment explanation
Indices: 32619034--32619112 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
32619024 CTAATGGCCC
32619034 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
** ***
32619059 ATGTGAT-AA-G-GCCGAGTGGCCA-
1 ATGTGATGAATGTG-AAAGTGTATAT
32619081 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
32619106 ATGTGAT
1 ATGTGAT
32619113 AAAGCCTAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 15 0.38
ACGTcount: A:0.33, C:0.05, G:0.30, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:32621409 original size:40 final size:40
Alignment explanation
Indices: 32621335--32621483 Score: 241
Period size: 40 Copynumber: 3.8 Consensus size: 40
32621325 GAGAATTGAG
*
32621335 AGTGATGTATCCGGACTAA--TCCGAAGAGTATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32621373 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32621413 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
32621453 AGTGATGTATCTGGGCT-AGGTCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
32621484 ATCATGCTGG
Statistics
Matches: 105, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
38 19 0.18
39 13 0.12
40 73 0.70
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:32622320 original size:40 final size:40
Alignment explanation
Indices: 32622226--32622366 Score: 144
Period size: 40 Copynumber: 3.5 Consensus size: 40
32622216 TTCGAATGGT
* * * * *
32622226 ATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGC-GAGTCACTAA
* *
32622267 ATCTGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCT-AATTCCCGAAGGCATTTGTGCGAGTCACTAA
* *
32622307 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATA
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTCACTA-A
32622348 A-CCGGGCT-ATATCCCGAAG
1 ATCCGGGCTAAT-TCCCGAAG
32622367 ACAATCGAGC
Statistics
Matches: 86, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
39 2 0.02
40 57 0.66
41 27 0.31
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTCACTAA
Found at i:32622387 original size:40 final size:40
Alignment explanation
Indices: 32622309--32622392 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
32622299 GTTACTAAAT
* * *
32622309 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
32622349 CCGGGCT-ATATCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
32622389 CCGG
1 CCGG
32622393 TTAAATTCTG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:32625177 original size:49 final size:49
Alignment explanation
Indices: 32625105--32625659 Score: 788
Period size: 49 Copynumber: 11.5 Consensus size: 49
32625095 GTATGAGATA
*
32625105 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
32625154 TATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTATG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
32625203 TATATATGTGATAAGGCCGAGTGGCCGATGTGATGAATTTGAAAGTATG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
32625252 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
*
32625301 TATATATGTGATAAGGCCGAGTGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
32625350 TATATATGTGATAAGACCGAGTGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
32625397 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
32625444 CATATGTGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
32625493 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
32625540 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
32625587 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
32625634 TATATATGTGATAAAGCCTAATGGCC
1 TATATATGTGATAAGGCCGAATGGCC
32625660 TATCTAAAAT
Statistics
Matches: 467, Mismatches: 37, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
47 196 0.42
49 271 0.58
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:32625495 original size:143 final size:143
Alignment explanation
Indices: 32625105--32625647 Score: 865
Period size: 143 Copynumber: 3.8 Consensus size: 143
32625095 GTATGAGATA
* *
32625105 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAA--GTGTATATATGTGATAAGG
* * * *
32625170 CCTAATGGCCGATGTAATGAATGTGAAAGTATGTATATATGTGATAAGGCCGAGTGGCCGATGTG
64 CCGAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCGAGTGGCCAATGTG
*
32625235 ATGAATTTGAAAGTATG
129 ATGAATGTGAAAG--TG
* * * *
32625252 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATGTATATATGTGATAAGG
1 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAG--TGTATATATGTGATAAGG
* *
32625317 CCGAGTGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGACCGAGTGGCCAATGTG
64 CCGAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCGAGTGGCCAATGTG
32625382 ATGAATGTGAAAGTG
129 ATGAATGTGAAAGTG
* *
32625397 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAGTGCATATGTGTGATAAGGCC
1 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
32625462 GAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGAT
66 GAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGAT
32625527 GAATGTGAAAGTG
131 GAATGTGAAAGTG
32625540 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
32625605 GAGTGGCCAATGTGATGAATGTGAAA--GTGTATATATGTGATAA
66 GAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
32625648 AGCCTAATGG
Statistics
Matches: 372, Mismatches: 22, Indels: 10
0.92 0.05 0.02
Matches are distributed among these distances:
141 17 0.05
143 181 0.49
145 44 0.12
147 130 0.35
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
TATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
GAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGAT
GAATGTGAAAGTG
Found at i:32625548 original size:25 final size:25
Alignment explanation
Indices: 32625520--32625645 Score: 77
Period size: 25 Copynumber: 5.3 Consensus size: 25
32625510 CGAGTGGCCA
32625520 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
32625545 ATGTGAT-AAAGCCTAA-TG-GCCC
1 ATGTGATGAATGTGAAAGTGTATAT
32625567 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
** ***
32625592 ATGTGAT-AA-G-GCCGAGTGGCCA-
1 ATGTGATGAATGTG-AAAGTGTATAT
32625614 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
32625639 ATGTGAT
1 ATGTGAT
32625646 AAAGCCTAAT
Statistics
Matches: 67, Mismatches: 26, Indels: 16
0.61 0.24 0.15
Matches are distributed among these distances:
22 15 0.22
23 15 0.22
24 15 0.22
25 22 0.33
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:32627557 original size:29 final size:29
Alignment explanation
Indices: 32627495--32627597 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
32627485 GTGACGAGAT
* * *
32627495 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
32627524 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * **
32627553 TGGCACTATGTGTGCGGGCTT-GAATCACG
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
32627582 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32627598 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:32633539 original size:29 final size:29
Alignment explanation
Indices: 32633477--32633579 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
32633467 GTGACGAGAT
* * *
32633477 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
32633506 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * **
32633535 TGGCACTATGTGTGCGGGCTT-GAATCACG
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
32633564 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32633580 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:32637152 original size:93 final size:93
Alignment explanation
Indices: 32636965--32637544 Score: 826
Period size: 93 Copynumber: 6.1 Consensus size: 93
32636955 TGAGATATAT
* *
32636965 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAA-GCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
* *
32637030 ATGGCCGATGTGATGAATGTGAAAGTGTA
65 GTGGCCAATGTGATGAATGTGAAAGTGTA
* *
32637059 TATATGTGATAAGCCTAATGGCCCATGTGATGAATGTGAAAGTGCATATGTGTGATAAGG-CGA-
1 TATATGTGATAAGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
*
32637122 TGGCCGATGTGATGAATGTGAAAGTATGTA
66 TGGCCAATGTGATGAATGTGAAAG--TGTA
* * *
32637152 TATATGTGATAAGGCCGAGTGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCC
1 TATATGTGATAA-GCCTAATGGCCCATGTGATGAATGTGAAA--GTGTATATATGTGATAAGGCC
* * *
32637217 TAATGGCCGATGTGATGAATGTGAAAGTATGTA
63 GAGTGGCCAATGTGATGAATGTGAAAG--TGTA
* * *
32637250 TATATGTGATAAGGCCGAGTGGCCGATGTGATGAATGTGAAAGTATGTATATATGTGATAAGGCC
1 TATATGTGATAA-GCCTAATGGCCCATGTGATGAATGTGAAAG--TGTATATATGTGATAAGGCC
*
32637315 GAGTGGCCAATGTTATGAATGTGAAAGTGTA
63 GAGTGGCCAATGTGATGAATGTGAAAGTGTA
32637346 TATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAGTGTA-ATATGTGATAAGGCCGA
1 TATATGTGAT-AAGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
32637410 GTGGCCAATGTGATGAATGTGAAAGTGTA
65 GTGGCCAATGTGATGAATGTGAAAGTGTA
* *
32637439 TATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAGTGCATATGTGTGATAA-GCCGA
1 TATATGTGAT-AAGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
*
32637503 GTGGCCAATGTGATGGATGTGAAAGTGTA
65 GTGGCCAATGTGATGAATGTGAAAGTGTA
*
32637532 TAAATGTGATAAG
1 TATATGTGATAAG
32637545 TCCCGAAGGG
Statistics
Matches: 453, Mismatches: 22, Indels: 24
0.91 0.04 0.05
Matches are distributed among these distances:
91 24 0.05
92 5 0.01
93 194 0.43
94 52 0.11
96 59 0.13
97 4 0.01
98 115 0.25
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (93 bp):
TATATGTGATAAGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAG
TGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:32637177 original size:49 final size:47
Alignment explanation
Indices: 32636965--32637544 Score: 819
Period size: 47 Copynumber: 12.3 Consensus size: 47
32636955 TGAGATATAT
*
32636965 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
*
32637012 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
* * *
32637059 TATATGTGATAA-GCCTAATGGCCCATGTGATGAATGTGAAAGTGCA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
*
32637105 TATGTGTGATAAGG-CG-ATGGCCGATGTGATGAATGTGAAAGTATGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAG--TGTA
*
32637152 TATATGTGATAAGGCCGAGTGGCCGATGTGATGAATGTGAAAGTGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA--GTGTA
*
32637201 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAG--TGTA
*
32637250 TATATGTGATAAGGCCGAGTGGCCGATGTGATGAATGTGAAAGTATGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAG--TGTA
* * *
32637299 TATATGTGATAAGGCCGAGTGGCCAATGTTATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
* * *
32637346 TATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
32637393 -ATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * *
32637439 TATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAGTGCA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * *
32637486 TATGTGTGATAA-GCCGAGTGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
*
32637532 TAAATGTGATAAG
1 TATATGTGATAAG
32637545 TCCCGAAGGG
Statistics
Matches: 486, Mismatches: 36, Indels: 22
0.89 0.07 0.04
Matches are distributed among these distances:
45 24 0.05
46 125 0.26
47 175 0.36
48 2 0.00
49 159 0.33
51 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
Done.