Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 116 of 325
Found at i:34768839 original size:21 final size:19
Alignment explanation
Indices: 34768810--34768861 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
34768800 TATGTGAAGC
34768810 GAAATTTTTGTTAAATGATCT
1 GAAA-TTTTGTT-AATGATCT
* *
34768831 GTAAATTTTGGTAATGCTCT
1 G-AAATTTTGTTAATGATCT
*
34768851 GAAACTTTGTT
1 GAAATTTTGTT
34768862 TCGGTGATGG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 8 0.31
20 8 0.31
21 7 0.27
22 3 0.12
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.46
Consensus pattern (19 bp):
GAAATTTTGTTAATGATCT
Found at i:34769880 original size:15 final size:15
Alignment explanation
Indices: 34769860--34769889 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
34769850 AATTATAGGA
*
34769860 TTGCCATCCAGGATT
1 TTGCCATCCAAGATT
34769875 TTGCCATCCAAGATT
1 TTGCCATCCAAGATT
34769890 GCTGGGACTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (15 bp):
TTGCCATCCAAGATT
Found at i:34776922 original size:40 final size:40
Alignment explanation
Indices: 34776877--34777044 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
34776867 CGGAATATAA
34776877 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
34776917 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
34776957 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
34776997 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
34777037 CCGGATAT
1 CCGGATAT
34777045 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:34777027 original size:80 final size:80
Alignment explanation
Indices: 34776893--34777042 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
34776883 ATAACCACGT
* *
34776893 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
34776958 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
34776973 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
34777036 CCCGGAT
64 CCCGGAT
34777043 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:34782027 original size:40 final size:40
Alignment explanation
Indices: 34781982--34782148 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
34781972 CGGAATATAA
34781982 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
34782022 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
34782062 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
34782102 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
34782141 CCGGATAT
1 CCGGATAT
34782149 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 14 0.14
40 88 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:34782132 original size:80 final size:79
Alignment explanation
Indices: 34781998--34782146 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
34781988 ATAACCACGT
*
34781998 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
34782063 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
34782078 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
34782141 CCGGAT
64 CCGGAT
34782147 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:34785150 original size:2 final size:2
Alignment explanation
Indices: 34785143--34785167 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
34785133 ATCACATGGC
34785143 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
34785168 CACAAAACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:34785733 original size:30 final size:29
Alignment explanation
Indices: 34785690--34785753 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
34785680 TAAGTAGCAG
34785690 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
*
34785719 AAGCTAGTTTAAATCGTACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
34785749 AAGCT
1 AAGCT
34785754 TCCGATTCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:34790387 original size:40 final size:40
Alignment explanation
Indices: 34790343--34790452 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
34790333 TTCACAATTT
* *
34790343 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
34790383 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
34790423 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
34790453 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:34798335 original size:40 final size:40
Alignment explanation
Indices: 34798291--34798400 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
34798281 TTCACAATTT
* *
34798291 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
34798331 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
34798371 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
34798401 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:34814205 original size:23 final size:22
Alignment explanation
Indices: 34814179--34814225 Score: 85
Period size: 23 Copynumber: 2.1 Consensus size: 22
34814169 AAGGTTTTGA
34814179 GATTTGGCAAAAAAGGGCAAGTT
1 GATTTGGCAAAAAA-GGCAAGTT
34814202 GATTTGGCAAAAAAGGCAAGTT
1 GATTTGGCAAAAAAGGCAAGTT
34814224 GA
1 GA
34814226 GTCCTTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 10 0.42
23 14 0.58
ACGTcount: A:0.40, C:0.09, G:0.30, T:0.21
Consensus pattern (22 bp):
GATTTGGCAAAAAAGGCAAGTT
Found at i:34814213 original size:22 final size:23
Alignment explanation
Indices: 34814179--34814225 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
34814169 AAGGTTTTGA
*
34814179 GATTTGGCAAAAAAGGGCAAGTT
1 GATTTGGCAAAAAAAGGCAAGTT
34814202 GATTTGGC-AAAAAAGGCAAGTT
1 GATTTGGCAAAAAAAGGCAAGTT
34814224 GA
1 GA
34814226 GTCCTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.40, C:0.09, G:0.30, T:0.21
Consensus pattern (23 bp):
GATTTGGCAAAAAAAGGCAAGTT
Found at i:34817915 original size:17 final size:17
Alignment explanation
Indices: 34817893--34817926 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
34817883 AATTTTGAGG
34817893 CATAAATTGTTTAGGAT
1 CATAAATTGTTTAGGAT
34817910 CATAAATTGTTTAGGAT
1 CATAAATTGTTTAGGAT
34817927 GTAATTAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.18, T:0.41
Consensus pattern (17 bp):
CATAAATTGTTTAGGAT
Found at i:34821661 original size:40 final size:40
Alignment explanation
Indices: 34821571--34821780 Score: 221
Period size: 40 Copynumber: 5.3 Consensus size: 40
34821561 ACCCAATTAT
* * *
34821571 CTTCGGGATTTAG-CCGGATATAACCACTCGCACAAA-GC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * ** *
34821609 CTTCGGGTCTTAGTCCGGATATGGTCACTAGCACAGATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* *
34821649 CTTCGGGACTTAGCCCGGATATAATAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* ** * *
34821689 CTTCGGGGCTTAGCCCGGA-ATTTGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAATCACTAGCACAAATGC
*
34821729 CTTCGGGACTTAGCCCGGA-ATTAATCACTAGCACAAATGT
1 CTTCGGGACTTAGCCCGGATA-TAATCACTAGCACAAATGC
*
34821769 CTTCAGGACTTA
1 CTTCGGGACTTA
34821781 ACCCCGTTAG
Statistics
Matches: 144, Mismatches: 25, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
38 11 0.08
39 19 0.13
40 114 0.79
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
Found at i:34821707 original size:80 final size:80
Alignment explanation
Indices: 34821571--34821772 Score: 250
Period size: 80 Copynumber: 2.5 Consensus size: 80
34821561 ACCCAATTAT
* * * * *
34821571 CTTCGGGATTTAG-CCGGATATAACCACTCGCACAAA-GCCTTCGGGTCTTAGTCCGG-ATATGG
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGGCTTAGCCCGGAAT-TGG
* *
34821633 TCACTAGCACAGATGC
65 TAACTAGCACAAATGC
* * *
34821649 CTTCGGGACTTAGCCCGGATATAATAACTTGCACAAATGCCTTCGGGGCTTAGCCCGGAATTTGT
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGGCTTAGCCCGGAATTGGT
*
34821714 AACTCGCACAAATGC
66 AACTAGCACAAATGC
*
34821729 CTTCGGGACTTAGCCCGGA-ATTAATCACTAGCACAAATGTCTTC
1 CTTCGGGACTTAGCCCGGATA-TAATCACTAGCACAAATGCCTTC
34821773 AGGACTTAAC
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
78 12 0.11
79 21 0.20
80 72 0.67
81 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGGCTTAGCCCGGAATTGGT
AACTAGCACAAATGC
Found at i:34825157 original size:25 final size:25
Alignment explanation
Indices: 34825123--34825185 Score: 126
Period size: 25 Copynumber: 2.5 Consensus size: 25
34825113 CCTCCTCAGC
34825123 AAAAATAAAAATAAATTTATTTTTT
1 AAAAATAAAAATAAATTTATTTTTT
34825148 AAAAATAAAAATAAATTTATTTTTT
1 AAAAATAAAAATAAATTTATTTTTT
34825173 AAAAATAAAAATA
1 AAAAATAAAAATA
34825186 TTAATAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (25 bp):
AAAAATAAAAATAAATTTATTTTTT
Found at i:34826097 original size:37 final size:37
Alignment explanation
Indices: 34826056--34826132 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
34826046 TATCATTTTT
* * *
34826056 TAAAATTAAATTGATATAGTATTATGTTTAAACTTTG
1 TAAAATTAAATGGATACACTATTATGTTTAAACTTTG
34826093 TAAAATTAAATGGATACACTATTATGTTTAAACTTTG
1 TAAAATTAAATGGATACACTATTATGTTTAAACTTTG
34826130 TAA
1 TAA
34826133 CACTACAGCA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.43
Consensus pattern (37 bp):
TAAAATTAAATGGATACACTATTATGTTTAAACTTTG
Found at i:34826166 original size:12 final size:12
Alignment explanation
Indices: 34826149--34826173 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34826139 AGCAAAATAG
34826149 GCTTTTAGCGGC
1 GCTTTTAGCGGC
34826161 GCTTTTAGCGGC
1 GCTTTTAGCGGC
34826173 G
1 G
34826174 TTTGGACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.24, G:0.36, T:0.32
Consensus pattern (12 bp):
GCTTTTAGCGGC
Found at i:34826643 original size:155 final size:152
Alignment explanation
Indices: 34826322--34826732 Score: 423
Period size: 155 Copynumber: 2.6 Consensus size: 152
34826312 GCAAAAAATA
* ** *
34826322 AAGCATTAGCGGCGTTTATAAAAGAACGCCGCAATGGCTGACACATTAGCGGCGGTTGTCAAAAA
1 AAGCATTAGCGGCGTTT-TAAAA-AACGCCGCAATGG-TGACGCATTAGCGGCAATT-TC-TAAA
* * ** *
34826387 ACGCCGCAAAAGTGTTGAGCAAAACGGTGCCGTATGTTTGTGAGCTCTTTTGAGGCATTAGCGGC
61 ACGACGCAAAAGTGTTGAGCAAAACGGCGCCGTATGTAGGTGAGC-CTATTGAGGCATTAGCGGC
** * *
34826452 GTTTTACTAAAAACGCTGCTATAACTTC
125 GTTTTACTAAAAACGCCACAAAAACTTC
34826480 AAGCATTAGCGGCGTTTTACCAAAAACGCCGCAATAGGTGACGCATTAGCGGCAATTTCTACAAA
1 AAGCATTAGCGGCGTTTTA--AAAAACGCCGCAAT-GGTGACGCATTAGCGGCAATTTCTA-AAA
* * *
34826545 CGTCGCAAAAGTATTGAGCAAAACGGCGCCGTGTGTAGGTGAG-CTATTGAGGCATTAGCGGCGT
62 CGACGCAAAAGTGTTGAGCAAAACGGCGCCGTATGTAGGTGAGCCTATTGAGGCATTAGCGGCGT
*
34826609 TTCT-CGT-AAAACGCCACAAAAAGTTC
127 TT-TAC-TAAAAACGCCACAAAAACTTC
* * * * **
34826635 AAGCATTAGCGGCGTTTTTGTAAAAGCGCCGCAATGGGTGAAGTATTAGCGGCGTTTTTCTTAAA
1 AAGCATTAGCGGCG-TTTT-AAAAAACGCCGCAAT-GGTGACGCATTAGCGGC-AATTTC-TAAA
* *
34826700 ACAACGCAGAAGTGTTGAGCAAAACGGCGCCGT
61 ACGACGCAAAAGTGTTGAGCAAAACGGCGCCGT
34826733 CCATTAGTTA
Statistics
Matches: 216, Mismatches: 27, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
155 79 0.37
156 42 0.19
157 46 0.21
158 44 0.20
159 5 0.02
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (152 bp):
AAGCATTAGCGGCGTTTTAAAAAACGCCGCAATGGTGACGCATTAGCGGCAATTTCTAAAACGAC
GCAAAAGTGTTGAGCAAAACGGCGCCGTATGTAGGTGAGCCTATTGAGGCATTAGCGGCGTTTTA
CTAAAAACGCCACAAAAACTTC
Found at i:34827096 original size:2 final size:2
Alignment explanation
Indices: 34827054--34827079 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
34827044 TGTCCCTTGT
34827054 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
34827080 AAACTTGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:34831426 original size:14 final size:13
Alignment explanation
Indices: 34831403--34831432 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
34831393 ATTACTATAA
34831403 TAATTATATGAAG
1 TAATTATATGAAG
34831416 TAATATATATGAAG
1 TAAT-TATATGAAG
34831430 TAA
1 TAA
34831433 AATTATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (13 bp):
TAATTATATGAAG
Found at i:34831811 original size:183 final size:183
Alignment explanation
Indices: 34831503--34831871 Score: 675
Period size: 183 Copynumber: 2.0 Consensus size: 183
34831493 GATATAGTTC
*
34831503 CATGTGTCTATATTAGTGAATTAATGTTGTATATGTTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
34831568 ACTATTGGTTCAACTAAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTAAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
34831633 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
* * *
34831686 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGTA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
* *
34831751 GCTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTAAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
34831816 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
34831869 CAT
1 CAT
34831872 CTGTTCTAGG
Statistics
Matches: 179, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
183 179 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (183 bp):
CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
ACTATTGGTTCAACTAAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
Found at i:34832092 original size:15 final size:15
Alignment explanation
Indices: 34832072--34832100 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
34832062 GGAGTAGACC
34832072 AGGTACGTTTTATTA
1 AGGTACGTTTTATTA
34832087 AGGTACGTTTTATT
1 AGGTACGTTTTATT
34832101 TCAAAATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (15 bp):
AGGTACGTTTTATTA
Found at i:34832851 original size:274 final size:273
Alignment explanation
Indices: 34832362--34832923 Score: 1088
Period size: 274 Copynumber: 2.1 Consensus size: 273
34832352 CCAACCTTAT
34832362 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
34832427 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCTACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
34832492 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACATGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
34832557 AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
196 AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTA-TTTTTTATATTAATAAT
34832622 GTTTTATTTTAATA
260 GTTTTATTTTAATA
*
34832636 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACTTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
34832701 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
34832766 AAAGACATGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACATGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
34832831 AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAATG
196 AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAATG
34832896 TTTTATTTTAATA
261 TTTTATTTTAATA
34832909 TTTAAATATTTTAAA
1 TTTAAATATTTTAAA
34832924 ATTTCTTTAA
Statistics
Matches: 285, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
273 46 0.16
274 239 0.84
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (273 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACATGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAATG
TTTTATTTTAATA
Found at i:34833238 original size:24 final size:24
Alignment explanation
Indices: 34833211--34833276 Score: 98
Period size: 24 Copynumber: 2.8 Consensus size: 24
34833201 ATTATTATTG
* *
34833211 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAA
34833235 AAATATTATTC-TCCGTTTTATCAA
1 AAATATTA-TCGTCCGTTTTATCAA
34833259 AAATATTATCGTCCGTTT
1 AAATATTATCGTCCGTTT
34833277 ACCGTTTAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
23 2 0.05
24 34 0.89
25 2 0.05
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.44
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAA
Found at i:34833611 original size:9 final size:9
Alignment explanation
Indices: 34833599--34833842 Score: 161
Period size: 9 Copynumber: 26.6 Consensus size: 9
34833589 TATTTGATAT
*
34833599 CATAATTTA
1 CATAACTTA
34833608 CATAACTTA
1 CATAACTTA
* *
34833617 TATAACATA
1 CATAACTTA
*
34833626 TATAACTTA
1 CATAACTTA
34833635 CATAACTTA
1 CATAACTTA
* *
34833644 TATAACATA
1 CATAACTTA
34833653 CATAACTTA
1 CATAACTTA
* *
34833662 TATAACATA
1 CATAACTTA
34833671 CATAACTTA
1 CATAACTTA
*
34833680 TATAACTTA
1 CATAACTTA
*
34833689 TATAACTTA
1 CATAACTTA
* *
34833698 GATAA-ATA
1 CATAACTTA
*
34833706 TATAACTTA
1 CATAACTTA
34833715 CATAACTTA
1 CATAACTTA
34833724 CATAATACTTA
1 CAT-A-ACTTA
* *
34833735 AATATATTTTATA
1 CATA-A--CT-TA
*
34833748 TCATAATTTA
1 -CATAACTTA
34833758 CATAACTTA
1 CATAACTTA
34833767 CATAACTTA
1 CATAACTTA
*
34833776 TATAACTTA
1 CATAACTTA
* *
34833785 GATAA-ATA
1 CATAACTTA
* *
34833793 TATAATTTA
1 CATAACTTA
*
34833802 CATAA-ATA
1 CATAACTTA
* * *
34833810 TATATCATA
1 CATAACTTA
*
34833819 TCATAAATTA
1 -CATAACTTA
34833829 CATAACTTA
1 CATAACTTA
34833838 CATAA
1 CATAA
34833843 TACTTAAATA
Statistics
Matches: 188, Mismatches: 37, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
8 17 0.09
9 144 0.77
10 11 0.06
11 9 0.05
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:34833621 original size:18 final size:18
Alignment explanation
Indices: 34833599--34833842 Score: 188
Period size: 18 Copynumber: 13.3 Consensus size: 18
34833589 TATTTGATAT
* *
34833599 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
34833617 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
34833635 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
*
34833653 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
34833671 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
34833689 TATAACTTAGATAA-ATA
1 CATAACTTATATAACTTA
* *
34833706 TATAACTTACATAACTTA
1 CATAACTTATATAACTTA
**
34833724 CATAATACTTAAATATATTTTATA
1 CAT-A-ACTT--ATATA-ACT-TA
* *
34833748 TCATAATTTACATAACTTA
1 -CATAACTTATATAACTTA
34833767 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
34833785 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
34833802 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
34833819 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
34833838 CATAA
1 CATAA
34833843 TACTTAAATA
Statistics
Matches: 182, Mismatches: 34, Indels: 20
0.77 0.14 0.08
Matches are distributed among these distances:
17 38 0.21
18 110 0.60
19 11 0.06
20 5 0.03
21 4 0.02
22 4 0.02
23 4 0.02
24 3 0.02
25 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:34833630 original size:27 final size:27
Alignment explanation
Indices: 34833595--34833842 Score: 196
Period size: 27 Copynumber: 9.0 Consensus size: 27
34833585 AATATATTTG
* *
34833595 ATATCATAATTTACATAACTTATATAAC
1 ATAT-ATAACTTACATAACTTACATAAC
*
34833623 ATATATAACTTACATAACTTATATAAC
1 ATATATAACTTACATAACTTACATAAC
* * *
34833650 ATACATAACTTATATAACATACATAAC
1 ATATATAACTTACATAACTTACATAAC
* * *
34833677 TTATATAACTTATATAACTTAGATAA-
1 ATATATAACTTACATAACTTACATAAC
34833703 ATATATAACTTACATAACTTACATAATAC
1 ATATATAACTTACATAACTTACAT-A-AC
* ** *
34833732 TTAAATATATTTTATATCATAATTTACATAAC
1 --ATATATA-ACT-TA-CATAACTTACATAAC
* * * *
34833764 TTACATAACTTATATAACTTAGATAA-
1 ATATATAACTTACATAACTTACATAAC
* * * *
34833790 ATATATAATTTACATAA-ATATATATC
1 ATATATAACTTACATAACTTACATAAC
*
34833816 ATATCATAAATTACATAACTTACATAA
1 ATAT-ATAACTTACATAACTTACATAA
34833843 TACTTAAATA
Statistics
Matches: 174, Mismatches: 35, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
25 5 0.03
26 38 0.22
27 91 0.52
28 12 0.07
29 1 0.01
30 4 0.02
31 6 0.03
32 3 0.02
33 3 0.02
34 11 0.06
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (27 bp):
ATATATAACTTACATAACTTACATAAC
Found at i:34839518 original size:21 final size:21
Alignment explanation
Indices: 34839485--34839535 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
34839475 ACAACTTAGA
*
34839485 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
34839506 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
34839527 GCAGAGGCA
1 GCAGAGGCA
34839536 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:34839836 original size:31 final size:31
Alignment explanation
Indices: 34839790--34839856 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
34839780 TGGTTGTATT
* *
34839790 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
34839821 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
34839852 TTTTA
1 TTTTA
34839857 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:34840079 original size:43 final size:43
Alignment explanation
Indices: 34839929--34840131 Score: 324
Period size: 42 Copynumber: 4.8 Consensus size: 43
34839919 TGTAAAAAAG
*
34839929 CGCCGCTAAAAGCCTTGACGTTTAGC-GCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
34839971 CGCCGCTAAAAGCCTTGACCTTTAGCGGCACTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
34840014 -GCCG-TAAAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
34840055 CGCCTCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
34840098 CGCCGCT-AAAGCCTTGACCTTTAGCAGCGTTTTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT
34840132 TTCCAATAAA
Statistics
Matches: 149, Mismatches: 9, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
41 35 0.23
42 57 0.38
43 57 0.38
ACGTcount: A:0.23, C:0.33, G:0.18, T:0.26
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:34848337 original size:20 final size:20
Alignment explanation
Indices: 34848312--34848352 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
34848302 ATAAAATCAA
34848312 TGAGCAAGAAAGATATATGC
1 TGAGCAAGAAAGATATATGC
34848332 TGAGCAAGAAAGATATATGC
1 TGAGCAAGAAAGATATATGC
34848352 T
1 T
34848353 CTAAAAGGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.10, G:0.24, T:0.22
Consensus pattern (20 bp):
TGAGCAAGAAAGATATATGC
Found at i:34850747 original size:18 final size:19
Alignment explanation
Indices: 34850724--34850764 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
34850714 AATAATAAAC
* *
34850724 AATAAAACACTAA-AATAA
1 AATAAAACAATAAGAACAA
34850742 AATAAAACAATAAGAACAA
1 AATAAAACAATAAGAACAA
34850761 AATA
1 AATA
34850765 GTAAAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.73, C:0.10, G:0.02, T:0.15
Consensus pattern (19 bp):
AATAAAACAATAAGAACAA
Found at i:34850785 original size:43 final size:45
Alignment explanation
Indices: 34850736--34850828 Score: 104
Period size: 43 Copynumber: 2.1 Consensus size: 45
34850726 TAAAACACTA
* *
34850736 AAATAAAATA-AAACAATAAGAACAAAATAGTAA-AATAAT-AAAT
1 AAATAAAATATAAACAATAAGAA-AAAATACTAATAAGAATGAAAT
* * *
34850779 AAAT-AAATATGAATAATAAGAAATAATACTAATAAGAATGAAAT
1 AAATAAAATATAAACAATAAGAAAAAATACTAATAAGAATGAAAT
34850823 AAATAA
1 AAATAA
34850829 GTAAAAATGG
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
42 13 0.32
43 19 0.46
44 8 0.20
45 1 0.02
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.22
Consensus pattern (45 bp):
AAATAAAATATAAACAATAAGAAAAAATACTAATAAGAATGAAAT
Found at i:34853235 original size:29 final size:29
Alignment explanation
Indices: 34853104--34853234 Score: 192
Period size: 29 Copynumber: 4.5 Consensus size: 29
34853094 GTGACGAGAT
34853104 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
34853133 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
34853162 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
** * ***
34853191 TGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
34853220 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
34853235 GGGTTTAAAA
Statistics
Matches: 93, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:34853291 original size:28 final size:28
Alignment explanation
Indices: 34853222--34853322 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
34853212 GAAGGGTATG
* * * *
34853222 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
34853252 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
34853280 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
34853309 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
34853323 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:34856031 original size:30 final size:28
Alignment explanation
Indices: 34855995--34856095 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
34855985 GACAAGATTG
* * *
34855995 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATATA
*
34856025 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
*
34856053 GCACTAAGTGTGCGAGTTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATATA
34856082 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
34856096 GATTCTCTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
28 26 0.41
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATATA
Found at i:34866646 original size:40 final size:40
Alignment explanation
Indices: 34866592--34866789 Score: 351
Period size: 40 Copynumber: 5.0 Consensus size: 40
34866582 CGGATGTAAC
* *
34866592 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
34866632 AACCCGCACGAATGCCTTTGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
34866672 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAGT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
34866712 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAGT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
34866752 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
34866790 TTTTTTTCCA
Statistics
Matches: 153, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 153 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:34868306 original size:15 final size:15
Alignment explanation
Indices: 34868286--34868316 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
34868276 GGCCCGTCTC
34868286 TTGCTCTTTTTACTA
1 TTGCTCTTTTTACTA
34868301 TTGCTCTTTTTACTA
1 TTGCTCTTTTTACTA
34868316 T
1 T
34868317 CCTAAGCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.19, G:0.06, T:0.61
Consensus pattern (15 bp):
TTGCTCTTTTTACTA
Found at i:34886881 original size:19 final size:19
Alignment explanation
Indices: 34886844--34886882 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
34886834 GTTAATTCTG
*
34886844 TATATTTGCATCTGTTATC
1 TATATTTGCATCTGATATC
34886863 TATATTTGTCATCT-ATATC
1 TATATTTG-CATCTGATATC
34886882 T
1 T
34886883 GTATATGGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.23, C:0.15, G:0.08, T:0.54
Consensus pattern (19 bp):
TATATTTGCATCTGATATC
Found at i:34890240 original size:23 final size:23
Alignment explanation
Indices: 34890184--34890232 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
34890174 ACTTAATAGT
34890184 GATCATATAACTAGAACGACACA
1 GATCATATAACTAGAACGACACA
* *
34890207 GATCACATAACTAGAATGACACA
1 GATCATATAACTAGAACGACACA
34890230 GAT
1 GAT
34890233 TGTATAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.47, C:0.20, G:0.14, T:0.18
Consensus pattern (23 bp):
GATCATATAACTAGAACGACACA
Found at i:34892400 original size:38 final size:38
Alignment explanation
Indices: 34892349--34892430 Score: 164
Period size: 38 Copynumber: 2.2 Consensus size: 38
34892339 AAAAACTGTA
34892349 AAAGATTGATTAATCGGATGAATGATTGGTGTCTAGAT
1 AAAGATTGATTAATCGGATGAATGATTGGTGTCTAGAT
34892387 AAAGATTGATTAATCGGATGAATGATTGGTGTCTAGAT
1 AAAGATTGATTAATCGGATGAATGATTGGTGTCTAGAT
34892425 AAAGAT
1 AAAGAT
34892431 ATTACAAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.33
Consensus pattern (38 bp):
AAAGATTGATTAATCGGATGAATGATTGGTGTCTAGAT
Found at i:34898461 original size:15 final size:15
Alignment explanation
Indices: 34898441--34898470 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
34898431 CTATAGGTCA
*
34898441 TTTGTCATTGTGATG
1 TTTGTCATTATGATG
34898456 TTTGTCATTATGATG
1 TTTGTCATTATGATG
34898471 AATGACTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.07, G:0.23, T:0.53
Consensus pattern (15 bp):
TTTGTCATTATGATG
Found at i:34901238 original size:73 final size:75
Alignment explanation
Indices: 34901108--34901257 Score: 241
Period size: 73 Copynumber: 2.0 Consensus size: 75
34901098 CGAGTTCTAC
*
34901108 AAGGTGACGATCTATAAGGAAAAGGGAACACAAACTAGGTAAGCATATAAGATGCTTAGTAAGTT
1 AAGGTGACGATCTACAAGGAAAAGGGAACACAAACTAGGTAAGCATATAAGATGCTTAGTAAGTT
34901173 CATAGCCATT
66 CATAGCCATT
* *
34901183 AAGGTGATGATCTACAAGGAAAAGGGAA-A-AAACTAGGTAAGCGTATAAGATGCTTAGTAAGTT
1 AAGGTGACGATCTACAAGGAAAAGGGAACACAAACTAGGTAAGCATATAAGATGCTTAGTAAGTT
* *
34901246 TATAGGCATT
66 CATAGCCATT
34901256 AA
1 AA
34901258 ACAAAACTTA
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
73 43 0.61
74 1 0.01
75 26 0.37
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.23
Consensus pattern (75 bp):
AAGGTGACGATCTACAAGGAAAAGGGAACACAAACTAGGTAAGCATATAAGATGCTTAGTAAGTT
CATAGCCATT
Found at i:34903427 original size:28 final size:27
Alignment explanation
Indices: 34903364--34903433 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
34903354 ATAGTGAGTC
34903364 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
* *
34903391 CACACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
34903419 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34903434 GTACAAGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:34905586 original size:30 final size:30
Alignment explanation
Indices: 34905531--34905690 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
34905521 ATAGTGAATC
34905531 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
34905560 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
34905590 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
34905619 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
34905647 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
34905677 CGCACACTTAGTGC
1 CGCACACTTAGTGC
34905691 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:34905623 original size:59 final size:57
Alignment explanation
Indices: 34905531--34905690 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
34905521 ATAGTGAATC
*
34905531 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
34905590 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
34905647 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
34905691 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:34913747 original size:27 final size:28
Alignment explanation
Indices: 34913691--34913760 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
34913681 AAACTTGTAC
34913691 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
34913719 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
34913746 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
34913761 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:34913771 original size:27 final size:27
Alignment explanation
Indices: 34913691--34913772 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
34913681 AAACTTGTAC
* *
34913691 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
34913719 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
34913746 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
34913773 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:34915329 original size:40 final size:40
Alignment explanation
Indices: 34915236--34915322 Score: 131
Period size: 40 Copynumber: 2.2 Consensus size: 40
34915226 GGGTGTTACA
*
34915236 GCATTTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAG
1 GCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAG
* *
34915276 GCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAG
1 GCATTTGTGCGAGTTACCA-AATCCGGGCTAAGTCCCGAAG
34915316 GCATTTG
1 GCATTTG
34915323 AACGAGTAGC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 41 0.95
41 2 0.05
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
GCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAG
Found at i:34920668 original size:40 final size:40
Alignment explanation
Indices: 34920541--34920670 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
34920531 ATGCTGGAAA
* *
34920541 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
34920581 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
34920621 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
34920661 TTATATCCGG
1 TTATATCCGG
34920671 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:34925936 original size:41 final size:41
Alignment explanation
Indices: 34925892--34926100 Score: 285
Period size: 41 Copynumber: 5.1 Consensus size: 41
34925882 CAAAAATTGT
* *
34925892 AAAACACAGTGCAATAGCGGCGCTTTTGGTAAAACGCCGCTA
1 AAAAC-CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
*
34925934 AAAACCAGAGCATTAGCGGCGCTTTTGATAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
* * *
34925975 AAAACCAGAGCATCAGCGGCGCTTTCGATAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
* ** *
34926016 AAAACCATAGCATTAGCGGCGCTTTCCGTAAAACGCCGATA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
* *
34926057 AAAACCAAAGCATTAGCGGCGCTTTCT-GTAAAACGCTGCTA
1 AAAACCAGAGCATTAGCGGCGCTTT-TGGTAAAACGCCGCTA
34926098 AAA
1 AAA
34926101 GTCATATAAC
Statistics
Matches: 152, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
41 147 0.97
42 5 0.03
ACGTcount: A:0.35, C:0.25, G:0.21, T:0.19
Consensus pattern (41 bp):
AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
Found at i:34926191 original size:24 final size:22
Alignment explanation
Indices: 34926142--34926189 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
34926132 AAAAAATAAT
* *
34926142 AAACACTAATCTATAACCCCTA
1 AAACACTAAACTATAAACCCTA
*
34926164 AAACACTAAACTCGTAAACCCTA
1 AAACACTAAACT-ATAAACCCTA
34926187 AAA
1 AAA
34926190 ACCCCTAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.50, C:0.29, G:0.02, T:0.19
Consensus pattern (22 bp):
AAACACTAAACTATAAACCCTA
Found at i:34926457 original size:21 final size:21
Alignment explanation
Indices: 34926431--34926474 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
34926421 TAGGAATTAT
*
34926431 GGTTTAAGTGTT-GGGGTTTAA
1 GGTTTAAGGGTTAGGGG-TTAA
*
34926452 GGTTTAGGGGTTAGGGGTTAA
1 GGTTTAAGGGTTAGGGGTTAA
34926473 GG
1 GG
34926475 GTCTATGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.18, C:0.00, G:0.45, T:0.36
Consensus pattern (21 bp):
GGTTTAAGGGTTAGGGGTTAA
Found at i:34926508 original size:50 final size:49
Alignment explanation
Indices: 34926446--34926543 Score: 117
Period size: 50 Copynumber: 2.0 Consensus size: 49
34926436 AAGTGTTGGG
* *
34926446 GTTTAAGGTTTAGGGGTTAGGGGTTAAGGGTCT-ATGATTAAGAGTTTAT
1 GTTTAAGGTTTAGGGGTTAGGGGTTAAGGAT-TAAGGATTAAGAGTTTAT
* * * *
34926495 GTTTTAGGATTTAGGGTTTATGGTTTAAGGATTAAGGATTAAGAGTTTA
1 GTTTAAGG-TTTAGGGGTTAGGGGTTAAGGATTAAGGATTAAGAGTTTA
34926544 GGGTTTAGTT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
49 8 0.20
50 33 0.80
ACGTcount: A:0.27, C:0.01, G:0.32, T:0.41
Consensus pattern (49 bp):
GTTTAAGGTTTAGGGGTTAGGGGTTAAGGATTAAGGATTAAGAGTTTAT
Found at i:34926701 original size:22 final size:22
Alignment explanation
Indices: 34926672--34926733 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
34926662 ACTTAGGGTA
34926672 TATG-GTTAAAGGTTTAAGGTT
1 TATGAGTTAAAGGTTTAAGGTT
* *
34926693 TATGAGTTACTA-TTTTAAGGTT
1 TATGAGTTA-AAGGTTTAAGGTT
* *
34926715 TATGAATT-ATGGTTTAAGG
1 TATGAGTTAAAGGTTTAAGG
34926734 GTCAAGGTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
21 11 0.34
22 20 0.62
23 1 0.03
ACGTcount: A:0.29, C:0.02, G:0.24, T:0.45
Consensus pattern (22 bp):
TATGAGTTAAAGGTTTAAGGTT
Found at i:34926770 original size:7 final size:7
Alignment explanation
Indices: 34926760--34926785 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
34926750 TAGGAGCTAG
34926760 GGGTTAT
1 GGGTTAT
34926767 GGGTTAT
1 GGGTTAT
34926774 GGGTTAT
1 GGGTTAT
34926781 GGGTT
1 GGGTT
34926786 CAGAGTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.46, T:0.42
Consensus pattern (7 bp):
GGGTTAT
Found at i:34927403 original size:7 final size:7
Alignment explanation
Indices: 34927389--34927417 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
34927379 GTTTTATAAT
34927389 TTAA-GG
1 TTAAGGG
34927395 TTAAGGG
1 TTAAGGG
34927402 TTAAGGG
1 TTAAGGG
34927409 TTAAGGG
1 TTAAGGG
34927416 TT
1 TT
34927418 TAAATTAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.18
7 18 0.82
ACGTcount: A:0.28, C:0.00, G:0.38, T:0.34
Consensus pattern (7 bp):
TTAAGGG
Found at i:34927522 original size:19 final size:20
Alignment explanation
Indices: 34927487--34927530 Score: 81
Period size: 19 Copynumber: 2.2 Consensus size: 20
34927477 TTAGATTTAA
34927487 AAAAACATTGATAAATAAAT
1 AAAAACATTGATAAATAAAT
34927507 AAAAACATTGAT-AATAAAT
1 AAAAACATTGATAAATAAAT
34927526 AAAAA
1 AAAAA
34927531 TAAAATATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.23
Consensus pattern (20 bp):
AAAAACATTGATAAATAAAT
Found at i:34927533 original size:6 final size:6
Alignment explanation
Indices: 34927517--34927551 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
34927507 AAAAACATTG
34927517 ATAATAA ATAAAA ATAAAA TATAAAA ATAAAA ATA
1 ATAA-AA ATAAAA ATAAAA -ATAAAA ATAAAA ATA
34927552 TATAAAATAG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 17 0.63
7 10 0.37
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (6 bp):
ATAAAA
Found at i:34927549 original size:14 final size:14
Alignment explanation
Indices: 34927524--34927565 Score: 59
Period size: 15 Copynumber: 3.0 Consensus size: 14
34927514 TTGATAATAA
34927524 ATAAAAAT-AAAAT
1 ATAAAAATAAAAAT
34927537 ATAAAAATAAAAAT
1 ATAAAAATAAAAAT
*
34927551 ATATAAAATAGAAAT
1 ATA-AAAATAAAAAT
34927566 TAGTGCAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 8 0.31
14 8 0.31
15 10 0.38
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (14 bp):
ATAAAAATAAAAAT
Found at i:34927813 original size:6 final size:6
Alignment explanation
Indices: 34927773--34927815 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
34927763 ACCCATACGA
* * *
34927773 TCCCTT CCCCTT CCCCTT TCCCTT TCCCAT TCCCTT TCCCTT T
1 TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T
34927816 GGTTTTGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.02, C:0.53, G:0.00, T:0.44
Consensus pattern (6 bp):
TCCCTT
Found at i:34930254 original size:13 final size:13
Alignment explanation
Indices: 34930211--34930254 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
34930201 GTTTATCTAC
*
34930211 AATATTTAAATTT
1 AATATTTAAAATT
*
34930224 AAAATTTAAAATT
1 AATATTTAAAATT
*
34930237 TATATTTAAAATT
1 AATATTTAAAATT
34930250 AATAT
1 AATAT
34930255 AATTTAATTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
AATATTTAAAATT
Found at i:34930315 original size:22 final size:21
Alignment explanation
Indices: 34930276--34930316 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
34930266 TTTACATAAT
*
34930276 ATTATTTAACTAATATATTTA
1 ATTATTTAACTAAAATATTTA
*
34930297 ATTATTTTAATTAAAATATT
1 ATTA-TTTAACTAAAATATT
34930317 GAAGTCAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
ATTATTTAACTAAAATATTTA
Found at i:34933094 original size:19 final size:21
Alignment explanation
Indices: 34933066--34933113 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
34933056 TTATTATTTA
34933066 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTTGATTCTAATAT
* *
34933086 TTTTA-TTTTTATTTTAATAT
1 TTTTAGTTTTGATTCTAATAT
34933106 TTTTAGTT
1 TTTTAGTT
34933114 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTCTAATAT
Found at i:34933357 original size:43 final size:43
Alignment explanation
Indices: 34933261--34933365 Score: 158
Period size: 43 Copynumber: 2.4 Consensus size: 43
34933251 TTTAAATTTA
34933261 ATGACTTTTAGCGGCGTTTGTGGGAAAAGCGACGCTAAAGGAC
1 ATGACTTTTAGCGGCGTTTGTGGGAAAAGCGACGCTAAAGGAC
* * *
34933304 -TGGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC
1 AT-GACTTTTAGCGGCGTTTGTGGGAAAAGCGACGCTAAAGGAC
*
34933347 ATGACTTTTAGCGGTGTTT
1 ATGACTTTTAGCGGCGTTT
34933366 TTTTAAATAA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
42 1 0.02
43 53 0.96
44 1 0.02
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (43 bp):
ATGACTTTTAGCGGCGTTTGTGGGAAAAGCGACGCTAAAGGAC
Found at i:34936538 original size:27 final size:27
Alignment explanation
Indices: 34936500--34936620 Score: 154
Period size: 27 Copynumber: 4.5 Consensus size: 27
34936490 CGTTATTTGA
*
34936500 AGGGTAAAATGACCGTAATGCCCTTGT
1 AGGGTAAAATGACCGTAATACCCTTGT
*
34936527 AGGGTAAAATGACCGTAATACCAC-TGA
1 AGGGTAAAATGACCGTAATACC-CTTGT
* * *
34936554 AGGGTAAAATGACCATAATTCCCCTGT
1 AGGGTAAAATGACCGTAATACCCTTGT
**
34936581 AGGGTAAAATGAATGTAATACCCTTGT
1 AGGGTAAAATGACCGTAATACCCTTGT
*
34936608 ATGGTAAAATGAC
1 AGGGTAAAATGAC
34936621 AATTATGACC
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 78 0.98
28 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (27 bp):
AGGGTAAAATGACCGTAATACCCTTGT
Found at i:34936560 original size:54 final size:54
Alignment explanation
Indices: 34936496--34936620 Score: 171
Period size: 54 Copynumber: 2.3 Consensus size: 54
34936486 AGGTCGTTAT
* * *
34936496 TTGAAGGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCGTAATACCAC
1 TTGAAGGGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGAACGTAATACC-C
* *
34936551 -TGAAGGGTAAAATGACCATAATTCCCCTGTAGGGTAAAATGAATGTAATACCC
1 TTGAAGGGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGAACGTAATACCC
* *
34936604 TTGTATGGTAAAATGAC
1 TTGAAGGGTAAAATGAC
34936621 AATTATGACC
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
53 1 0.02
54 61 0.98
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (54 bp):
TTGAAGGGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGAACGTAATACCC
Found at i:34936813 original size:27 final size:27
Alignment explanation
Indices: 34936783--34936842 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
34936773 TGTCACATTC
34936783 ACTGTTACAGGTGG-TTATGCTACAATT
1 ACTGTTACAGGTGGCTT-TGCTACAATT
* * *
34936810 ACTGATACTGGTGGCTTTGCTACATTT
1 ACTGTTACAGGTGGCTTTGCTACAATT
34936837 ACTGTT
1 ACTGTT
34936843 TTTGGCAGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 26 0.93
28 2 0.07
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.40
Consensus pattern (27 bp):
ACTGTTACAGGTGGCTTTGCTACAATT
Found at i:34946084 original size:29 final size:28
Alignment explanation
Indices: 34946018--34946157 Score: 142
Period size: 29 Copynumber: 4.9 Consensus size: 28
34946008 TACATACATG
34946018 CATATGGCCCA-CTAGGCCCAATCTCA-TT
1 CATATGGCCCATC-AGGCCCAAT-TCACTT
* *
34946046 TATATGGCCCATCCGGCCCAATTCACGTT
1 CATATGGCCCATCAGGCCCAATTCAC-TT
*
34946075 CATATGGCCCATTAGGCCCAATTCACATT
1 CATATGGCCCATCAGGCCCAATTCAC-TT
* *
34946104 CCTATGGCCCATTAGGCCCAATCTCA-TT
1 CATATGGCCCATCAGGCCCAAT-TCACTT
* * *
34946132 TATATGGCCCATCCGGCCCAAATCAC
1 CATATGGCCCATCAGGCCCAATTCAC
34946158 ATTATATTTA
Statistics
Matches: 95, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
27 6 0.06
28 37 0.39
29 49 0.52
30 3 0.03
ACGTcount: A:0.24, C:0.35, G:0.15, T:0.26
Consensus pattern (28 bp):
CATATGGCCCATCAGGCCCAATTCACTT
Found at i:34946091 original size:57 final size:57
Alignment explanation
Indices: 34946018--34946164 Score: 165
Period size: 57 Copynumber: 2.6 Consensus size: 57
34946008 TACATACATG
* * * *
34946018 CATATGGCCCACTAGGCCCAA-TCTCATTTATATGGCCCATCCGGCCCAAT-TCACGTT
1 CATATGGCCCATTAGGCCCAATTCACATTCATATGGCCCATCAGGCCCAATCTCA--TT
* *
34946075 CATATGGCCCATTAGGCCCAATTCACATTCCTATGGCCCATTAGGCCCAATCTCATT
1 CATATGGCCCATTAGGCCCAATTCACATTCATATGGCCCATCAGGCCCAATCTCATT
* ** *
34946132 TATATGGCCCATCCGGCCCAAATCACATT-ATAT
1 CATATGGCCCATTAGGCCCAATTCACATTCATAT
34946165 TTATGCATAC
Statistics
Matches: 77, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
56 3 0.04
57 47 0.61
58 24 0.31
59 3 0.04
ACGTcount: A:0.25, C:0.33, G:0.14, T:0.27
Consensus pattern (57 bp):
CATATGGCCCATTAGGCCCAATTCACATTCATATGGCCCATCAGGCCCAATCTCATT
Found at i:34950702 original size:28 final size:28
Alignment explanation
Indices: 34950578--34950711 Score: 110
Period size: 28 Copynumber: 4.8 Consensus size: 28
34950568 TACATACATG
* *
34950578 CATATGGCCCACTAGGCCAAATCTCATT
1 CATATGGCCCATTAGGCCCAATCTCATT
* ** *
34950606 TATATGGCCCATCCGGCCTAAT-TCACGTT
1 CATATGGCCCATTAGGCCCAATCTCA--TT
* * **
34950635 CATATAGCCCATCT-GACCCAATCAAATT
1 CATATGGCCCAT-TAGGCCCAATCTCATT
34950663 CATATGGCCCATTAGGCCCAATCTCATT
1 CATATGGCCCATTAGGCCCAATCTCATT
* **
34950691 TATATGGCCCATCCGGCCCAA
1 CATATGGCCCATTAGGCCCAA
34950712 ATCACATTAT
Statistics
Matches: 82, Mismatches: 19, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
27 4 0.05
28 59 0.72
29 18 0.22
30 1 0.01
ACGTcount: A:0.27, C:0.33, G:0.14, T:0.26
Consensus pattern (28 bp):
CATATGGCCCATTAGGCCCAATCTCATT
Found at i:34950721 original size:28 final size:28
Alignment explanation
Indices: 34950594--34950723 Score: 111
Period size: 28 Copynumber: 4.6 Consensus size: 28
34950584 GCCCACTAGG
*
34950594 CCAAATCTCATTTATATGGCCCATCCGGC
1 CCAAATCACA-TTATATGGCCCATCCGGC
* * * * * *
34950623 CTAATTCACGTTCATATAGCCCATCTGAC
1 CCAAATCACATT-ATATGGCCCATCCGGC
* **
34950652 CC-AATCAAATTCATATGGCCCATTAGGC
1 CCAAATCACATT-ATATGGCCCATCCGGC
*
34950680 CC-AATCTCATTTATATGGCCCATCCGGC
1 CCAAATCACA-TTATATGGCCCATCCGGC
34950708 CCAAATCACATTATAT
1 CCAAATCACATTATAT
34950724 TCATGCTCAC
Statistics
Matches: 78, Mismatches: 20, Indels: 7
0.74 0.19 0.07
Matches are distributed among these distances:
28 50 0.64
29 28 0.36
ACGTcount: A:0.28, C:0.32, G:0.12, T:0.28
Consensus pattern (28 bp):
CCAAATCACATTATATGGCCCATCCGGC
Found at i:34951256 original size:27 final size:27
Alignment explanation
Indices: 34951218--34951272 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
34951208 ACTAGGGGAC
34951218 TAGCATCCAACATAATTCACCCCCTTA
1 TAGCATCCAACATAATTCACCCCCTTA
34951245 TAGCATCCAACATAATTCACCCCCTTA
1 TAGCATCCAACATAATTCACCCCCTTA
34951272 T
1 T
34951273 CTCACTTAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.36, G:0.04, T:0.27
Consensus pattern (27 bp):
TAGCATCCAACATAATTCACCCCCTTA
Found at i:34953997 original size:30 final size:30
Alignment explanation
Indices: 34953939--34953998 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
34953929 TTCCCGAACC
* * *
34953939 TAGGGGCAAAAGTGTAATTATGTAAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
* *
34953969 TAGGGGCAAAAATATAATTTTGCCAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
34953999 CGTATTAAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATATAATTATGCAAAAGTT
Found at i:34955656 original size:40 final size:39
Alignment explanation
Indices: 34955611--34955818 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
34955601 CGGAATACAA
*
34955611 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
34955651 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
34955691 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
34955731 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
34955771 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
34955811 CCGGATAT
1 CCGGATAT
34955819 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:34955751 original size:80 final size:80
Alignment explanation
Indices: 34955611--34955817 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
34955601 CGGAATACAA
* * *
34955611 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
34955675 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
34955691 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
34955755 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
34955771 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
34955818 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:34963706 original size:40 final size:39
Alignment explanation
Indices: 34963661--34963868 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
34963651 CGGAATACAA
*
34963661 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
34963701 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
34963741 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
34963781 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
34963821 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
34963861 CCGGATAT
1 CCGGATAT
34963869 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:34963801 original size:80 final size:80
Alignment explanation
Indices: 34963661--34963867 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
34963651 CGGAATACAA
* * *
34963661 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
34963725 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
34963741 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
34963805 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
34963821 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
34963868 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:34972071 original size:20 final size:20
Alignment explanation
Indices: 34972042--34972115 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
34972032 ATCAGTATAT
* *
34972042 GGCACAAAGCCATGAGTAGC
1 GGCACAAAGCCATCAATAGC
* *
34972062 GGCACGAAGCCATCAATAGT
1 GGCACAAAGCCATCAATAGC
*
34972082 GGCACAAAGCCATCAATAAC
1 GGCACAAAGCCATCAATAGC
34972102 GGCACAAAAGCCAT
1 GGCAC-AAAGCCAT
34972116 TAGTAGGTCC
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
20 38 0.83
21 8 0.17
ACGTcount: A:0.39, C:0.27, G:0.23, T:0.11
Consensus pattern (20 bp):
GGCACAAAGCCATCAATAGC
Found at i:34984641 original size:16 final size:15
Alignment explanation
Indices: 34984609--34984651 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
34984599 GAACAGGGTG
* *
34984609 GTGGCGAACTAGGGA
1 GTGGCGAGCTAGAGA
34984624 GTGGCGAGCTAGCAGA
1 GTGGCGAGCTAG-AGA
*
34984640 GTGGTGAGCTAG
1 GTGGCGAGCTAG
34984652 TGAAGGTGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.23, C:0.14, G:0.47, T:0.16
Consensus pattern (15 bp):
GTGGCGAGCTAGAGA
Found at i:34985828 original size:108 final size:107
Alignment explanation
Indices: 34985663--34985978 Score: 330
Period size: 108 Copynumber: 2.9 Consensus size: 107
34985653 CAGTGAGTCA
* * * * *
34985663 CAAGATTTGAAAAATCTTGTAAACATAA-GCTTGTGATCTTAAATTGGCAAGCGACAAGATTCAA
1 CAAGATTTGGAAAATCTTGTAAATATAAGGC-TGTGATCTTAAATTAGCGAGCCACAAGATTCAA
* *
34985727 AAAATCTTATAAGTATAAGGTTGCGATCTTAAATCAGCAAACCG
65 AAAATCTTATAAATATAAGGTTGCAATCTTAAATCAG-AAACCG
* * * *
34985771 TAAGATTTGGAAAATCTTATAAGTATAAGGCTGTGATCTTAAATTAGCGAGCCACAAGATTAAAA
1 CAAGATTTGGAAAATCTTGTAAATATAAGGCTGTGATCTTAAATTAGCGAGCCACAAGATTCAAA
** * * *
34985836 AAAAATTCTAAATATAAGGTTACAATCTTAAAT-TGACAACCTG
66 AAATCTTATAAATATAAGGTTGCAATCTTAAATCAGA-AACC-G
* * * * * * ** *
34985879 CAAGAGTTGGAAAATCCTGTAACTATAAGACTGCGATCTTAAATCAATGAGCCGCAAGATTCAAA
1 CAAGATTTGGAAAATCTTGTAAATATAAGGCTGTGATCTTAAATTAGCGAGCCACAAGATTCAAA
* * *
34985944 AAATCTTGTAAAAATAAGTTTGCAATCTTAAATCA
66 AAATCTTATAAATATAAGGTTGCAATCTTAAATCA
34985979 AAAAATCACA
Statistics
Matches: 169, Mismatches: 35, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
106 1 0.01
107 5 0.03
108 161 0.95
109 2 0.01
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (107 bp):
CAAGATTTGGAAAATCTTGTAAATATAAGGCTGTGATCTTAAATTAGCGAGCCACAAGATTCAAA
AAATCTTATAAATATAAGGTTGCAATCTTAAATCAGAAACCG
Found at i:34985854 original size:54 final size:54
Alignment explanation
Indices: 34985628--34985838 Score: 199
Period size: 54 Copynumber: 3.9 Consensus size: 54
34985618 AAACTAAGCC
* * ** * * *
34985628 TAAGTATAAGGTTGGGATCTTAAATCAGTGAGTCACAAGATTTGAAAAATCTTG
1 TAAGTATAAGGCTGTGATCTTAAATCAGCAAGCCACAAGATTTAAAAAATCTTA
** ** * *
34985682 TAAACATAA-GCTTGTGATCTTAAATTGGCAAGCGACAAGATTCAAAAAATCTTA
1 TAAGTATAAGGC-TGTGATCTTAAATCAGCAAGCCACAAGATTTAAAAAATCTTA
* * * ** **
34985736 TAAGTATAAGGTTGCGATCTTAAATCAGCAAACCGTAAGATTTGGAAAATCTTA
1 TAAGTATAAGGCTGTGATCTTAAATCAGCAAGCCACAAGATTTAAAAAATCTTA
* * *
34985790 TAAGTATAAGGCTGTGATCTTAAATTAGCGAGCCACAAGATTAAAAAAA
1 TAAGTATAAGGCTGTGATCTTAAATCAGCAAGCCACAAGATTTAAAAAA
34985839 AATTCTAAAT
Statistics
Matches: 119, Mismatches: 36, Indels: 4
0.75 0.23 0.03
Matches are distributed among these distances:
53 1 0.01
54 117 0.98
55 1 0.01
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.28
Consensus pattern (54 bp):
TAAGTATAAGGCTGTGATCTTAAATCAGCAAGCCACAAGATTTAAAAAATCTTA
Found at i:34989990 original size:40 final size:39
Alignment explanation
Indices: 34989946--34990126 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
34989936 GTTCAAAACA
* * ** * *
34989946 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
34989986 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
34990026 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
34990065 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
34990104 CCTTC-GGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
34990127 CTTGAACATT
Statistics
Matches: 128, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
38 17 0.13
39 71 0.55
40 40 0.31
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:34990057 original size:39 final size:39
Alignment explanation
Indices: 34989976--34990126 Score: 241
Period size: 39 Copynumber: 3.9 Consensus size: 39
34989966 TATGGTAACC
* * * *
34989976 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
34990016 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
34990055 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
34990094 CGCACAATTGCCTTC-GGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
34990127 CTTGAACATT
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
38 17 0.16
39 71 0.68
40 17 0.16
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:34997478 original size:40 final size:39
Alignment explanation
Indices: 34997434--34997649 Score: 271
Period size: 39 Copynumber: 5.6 Consensus size: 39
34997424 GTTCAAAACA
* * ** * *
34997434 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
34997474 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
34997514 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
34997553 CCTTCGGGCTTAGCCCGGATATCATAGCTCG--CAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
34997590 CCTT-GGGCTTAGCCCGG-TATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
34997627 CCTTC-GGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
34997650 CTCGAACATT
Statistics
Matches: 159, Mismatches: 13, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
35 12 0.08
36 13 0.08
37 32 0.20
38 5 0.03
39 57 0.36
40 40 0.25
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.25
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:34997621 original size:74 final size:77
Alignment explanation
Indices: 34997464--34997650 Score: 292
Period size: 74 Copynumber: 2.5 Consensus size: 77
34997454 TATGGTAACC
* *
34997464 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCG-ACAATTGCCTTCGGGCTTAGCC
34997529 CGGGTATCATAGCT
64 CGGGTATCATAGCT
* *
34997543 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCG-CAATTGCCTT-GGGCTTAGCCC-
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGACAATTGCCTTCGGGCTTAGCCCG
34997605 GGTATCATAGCT
66 GGTATCATAGCT
34997617 CGCACAATTGCCTTC-GGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
34997651 TCGAACATTC
Statistics
Matches: 103, Mismatches: 5, Indels: 6
0.90 0.04 0.05
Matches are distributed among these distances:
73 18 0.17
74 27 0.26
75 11 0.11
76 10 0.10
78 20 0.19
79 17 0.17
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.25
Consensus pattern (77 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGACAATTGCCTTCGGGCTTAGCCCG
GGTATCATAGCT
Found at i:34997625 original size:37 final size:39
Alignment explanation
Indices: 34997464--34997649 Score: 283
Period size: 39 Copynumber: 4.9 Consensus size: 39
34997454 TATGGTAACC
* * * *
34997464 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
34997504 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
34997543 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
34997582 CG--CAATTGCCTT-GGGCTTAGCCCGG-TATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
34997617 CGCACAATTGCCTTC-GGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
34997650 CTCGAACATT
Statistics
Matches: 136, Mismatches: 6, Indels: 10
0.89 0.04 0.07
Matches are distributed among these distances:
35 12 0.09
36 13 0.10
37 32 0.24
38 5 0.04
39 57 0.42
40 17 0.12
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:35006443 original size:39 final size:40
Alignment explanation
Indices: 35006315--35006517 Score: 211
Period size: 39 Copynumber: 5.2 Consensus size: 40
35006305 CAATTGAATG
* * ** **
35006315 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCTAGTTGTT
* **
35006355 ATATCCGGGTTAAGA-CCGAAGGCATT-GTGCTAG-TGAC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCTAGTTGTT
* *
35006392 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCTAGTTGTT
* * * *
35006432 A-ATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCTAGTTGTT
*
35006471 ATATCC-GGCTAAGACCCGAAGGCATTCGTGCGT-GTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGC-TAGTTGTT
35006510 ATATCCGG
1 ATATCCGG
35006518 TTGTATTCCG
Statistics
Matches: 136, Mismatches: 21, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
37 13 0.10
38 17 0.12
39 85 0.62
40 21 0.15
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCTAGTTGTT
Found at i:35006451 original size:77 final size:79
Alignment explanation
Indices: 35006317--35006501 Score: 216
Period size: 77 Copynumber: 2.4 Consensus size: 79
35006307 ATTGAATGAT
* * ** * *
35006317 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCGAAGGCA-TT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTATATCCGGGCTAAGACCGAAGGCATTT
*
35006381 GTGCTAGT-GACAC
66 GTGCGAGTCGACAC
** *
35006394 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTA-ATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTATATCCGGGCTAAGA-CCGAAGGCATT
** *
35006458 TGTGCGAGTCGTTAT
65 TGTGCGAGTCGACAC
35006473 ATCC-GGCTAAGACCCGAAGGCATTCGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGC
35006502 GTGTGGTTAT
Statistics
Matches: 92, Mismatches: 13, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
76 11 0.12
77 41 0.45
78 34 0.37
79 6 0.07
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (79 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTATATCCGGGCTAAGACCGAAGGCATTT
GTGCGAGTCGACAC
Found at i:35009681 original size:40 final size:40
Alignment explanation
Indices: 35009615--35009781 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
35009605 AAATTGAATG
* * *
35009615 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
35009654 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
35009694 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
35009734 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
35009774 ATATCCGG
1 ATATCCGG
35009782 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:35010940 original size:38 final size:39
Alignment explanation
Indices: 35010780--35010968 Score: 211
Period size: 39 Copynumber: 4.8 Consensus size: 39
35010770 TCGTTCAAAC
* * * * * *
35010780 GCCTTCGGGACATAGCCCGGTTATGATAACTCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATT
* * * * *
35010820 GCCTTTGGGACTTAACCCAGATATCACAACTCGCACAATC
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATT
* *
35010860 GCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACATTT
1 GCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACAATT
*
35010899 GCCTTCGGGCTTAGCCCGGAT-TCACAATTCGCACATTT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATT
35010937 GCCTTCGGGCTTAGCCCGGATATCACAATTCG
1 GCCTTCGGGCTTAGCCCGGATATCACAATTCG
35010969 ACCATTCATC
Statistics
Matches: 129, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 35 0.27
39 55 0.43
40 39 0.30
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATT
Found at i:35010945 original size:77 final size:79
Alignment explanation
Indices: 35010779--35010961 Score: 235
Period size: 77 Copynumber: 2.3 Consensus size: 79
35010769 CTCGTTCAAA
* * * *
35010779 CGCCTTCGGGACATAGCCCGGTTATGATAACTCGCACAAATGCCTTTGGGACTTAACCCAGATAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAATGCCTTCGGGACTTAACCCAGATAT
35010844 CACAACTCGCACAAT
65 CACAACTCGCACAAT
* ** * *
35010859 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTTGCCTTCGGG-CTTAGCCCGGAT-TC
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAATGCCTTCGGGACTTAACCCAGATATC
* *
35010922 ACAATTCGCACATT
66 ACAACTCGCACAAT
*
35010936 TGCCTTCGGGCTTAGCCCGGATATCA
1 CGCCTTCGGGCTTAGCCCGGATATCA
35010962 CAATTCGACC
Statistics
Matches: 91, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
77 39 0.43
78 10 0.11
79 32 0.35
80 10 0.11
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (79 bp):
CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAATGCCTTCGGGACTTAACCCAGATATC
ACAACTCGCACAAT
Found at i:35021155 original size:40 final size:40
Alignment explanation
Indices: 35021110--35021284 Score: 296
Period size: 40 Copynumber: 4.4 Consensus size: 40
35021100 CATGTGCACA
*
35021110 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAG
35021150 GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAG
35021190 GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAG
* * * *
35021230 GCATTCGTACGAGTTATTATTACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAG
*
35021270 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
35021285 GTTACATCCG
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 127 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAG
Found at i:35021308 original size:80 final size:80
Alignment explanation
Indices: 35021110--35021308 Score: 245
Period size: 80 Copynumber: 2.5 Consensus size: 80
35021100 CATGTGCACA
* * ** * * *
35021110 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCG
1 GCATTCGTGCGGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTACGAGTTATTATAACCG
35021175 GGCTAAGTCCCGAAG
66 GGCTAAGTCCCGAAG
* * * * *
35021190 GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAGGCATTCGTACGAGTTATTATTACCG
1 GCATTCGTGCGGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTACGAGTTATTATAACCG
*
35021255 GGTTAAGTCCCGAAG
66 GGCTAAGTCCCGAAG
* * * *
35021270 GCATTCGTGCTGGTTGTTACATCCGAGCCAAATTCCGAA
1 GCATTCGTGCGGGTTATTACAACCGAGCCAAATCCCGAA
35021309 AGTATTTATG
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
80 106 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
GCATTCGTGCGGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTACGAGTTATTATAACCG
GGCTAAGTCCCGAAG
Found at i:35031897 original size:34 final size:34
Alignment explanation
Indices: 35031855--35031948 Score: 116
Period size: 26 Copynumber: 3.0 Consensus size: 34
35031845 GGTAAGTTTA
35031855 GTTT-TTGTTATACAAACTTACTAAGCATGTAAT
1 GTTTATTGTTATACAAACTTACTAAGCATGTAAT
35031888 GTTTATTGTTATACAAAC-T--T-----TGTAAT
1 GTTTATTGTTATACAAACTTACTAAGCATGTAAT
*
35031914 GCTTATTGTTATACAAACTTACTAAGCATGTAAT
1 GTTTATTGTTATACAAACTTACTAAGCATGTAAT
35031948 G
1 G
35031949 CTTACTCCTT
Statistics
Matches: 51, Mismatches: 1, Indels: 17
0.74 0.01 0.25
Matches are distributed among these distances:
26 23 0.45
27 1 0.02
29 1 0.02
31 1 0.02
33 5 0.10
34 20 0.39
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.43
Consensus pattern (34 bp):
GTTTATTGTTATACAAACTTACTAAGCATGTAAT
Found at i:35032655 original size:25 final size:25
Alignment explanation
Indices: 35032621--35032674 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
35032611 TTAACCACAC
35032621 GGCCTAGCACACGAGCATGTGGCAT
1 GGCCTAGCACACGAGCATGTGGCAT
** * *
35032646 GGCCTAGCACTTGGGCGTGTGGCAT
1 GGCCTAGCACACGAGCATGTGGCAT
35032671 GGCC
1 GGCC
35032675 GTGTGTGCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.17, C:0.28, G:0.37, T:0.19
Consensus pattern (25 bp):
GGCCTAGCACACGAGCATGTGGCAT
Found at i:35037288 original size:40 final size:40
Alignment explanation
Indices: 35037072--35037269 Score: 278
Period size: 40 Copynumber: 5.0 Consensus size: 40
35037062 TCGAATGATG
* * *
35037072 TCCGGGCTAAG-TCCCGAAGGC-TCTGTGCTAAGTTACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
35037112 TCCGGACTAAGATCCGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
35037152 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
35037192 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
* *
35037232 TCCGGGA-TGAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
35037270 TAACCAGGCT
Statistics
Matches: 147, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
39 1 0.01
40 137 0.93
41 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:35040553 original size:27 final size:27
Alignment explanation
Indices: 35040516--35040715 Score: 258
Period size: 27 Copynumber: 7.4 Consensus size: 27
35040506 ATTACTAAAA
**
35040516 TACCCTCGATTTGTAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
35040543 TATCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
35040570 CACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
35040597 TACCCTCGATTTATAGAATTATCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
35040624 TACCTTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
35040651 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
35040678 TACCCTC-AGTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTACAGAATTACCATTT
35040705 TACCCTCGATT
1 TACCCTCGATT
35040716 GTGAAATTAT
Statistics
Matches: 151, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 149 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:35040635 original size:81 final size:81
Alignment explanation
Indices: 35040516--35040715 Score: 287
Period size: 81 Copynumber: 2.5 Consensus size: 81
35040506 ATTACTAAAA
* * *
35040516 TACCCTCGATTTGTAGAATTACCATTTTATCCTT-GATTTATAGAATTACCGTTTCACCCTCGAT
1 TACCCTCGATTTATAGAATTACCATTTTA-CCTTCGATTTACAGAATTACCATTTCACCCTCGAT
35040580 TTACAAAATTACCATTT
65 TTACAAAATTACCATTT
* *
35040597 TACCCTCGATTTATAGAATTATCATTTTACCTTCGATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCTTCGATTTACAGAATTACCATTTCACCCTCGATT
35040662 TACAAAATTACCATTT
66 TACAAAATTACCATTT
* * * *
35040678 TACCCTC-AGTTTACAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGA-TTTATAGAATTACCATTTTACCTTCGATT
35040716 GTGAAATTAT
Statistics
Matches: 107, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
80 5 0.05
81 102 0.95
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCATTTTACCTTCGATTTACAGAATTACCATTTCACCCTCGATT
TACAAAATTACCATTT
Found at i:35040761 original size:27 final size:26
Alignment explanation
Indices: 35040731--35040870 Score: 91
Period size: 27 Copynumber: 5.2 Consensus size: 26
35040721 ATTATTGAAG
* *
35040731 TACCCTTGTAGGATAGAATTACCAAAA
1 TACCCTAGTAGG-TAAAATTACCAAAA
**
35040758 TACCCCTAGTTTGTAAAATTACCAAAA
1 TA-CCCTAGTAGGTAAAATTACCAAAA
** * *
35040785 TACCCCTAGTTTGTAAAATTATCGAAA
1 TA-CCCTAGTAGGTAAAATTACCAAAA
* ** * *
35040812 TACCACTGGTTTGTGAAATTACCGAAA
1 TACC-CTAGTAGGTAAAATTACCAAAA
* **
35040839 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCT-AGTAGGTAAAATTACCAAAA
35040866 TACCC
1 TACCC
35040871 CTGATTTACA
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.04
27 86 0.89
28 7 0.07
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (26 bp):
TACCCTAGTAGGTAAAATTACCAAAA
Found at i:35040805 original size:54 final size:54
Alignment explanation
Indices: 35040747--35040872 Score: 173
Period size: 54 Copynumber: 2.3 Consensus size: 54
35040737 TGTAGGATAG
*
35040747 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTC-AATTTGTAA
* * * * * *
35040801 AATTATCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAA
35040855 AATTACCAAAATACCCCT
1 AATTACCAAAATACCCCT
35040873 GATTTACAAA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
54 60 0.98
55 1 0.02
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (54 bp):
AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAA
Found at i:35040842 original size:81 final size:81
Alignment explanation
Indices: 35040747--35040895 Score: 221
Period size: 81 Copynumber: 1.8 Consensus size: 81
35040737 TGTAGGATAG
* ** *
35040747 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTATCGA
1 AATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTGA-TTTACAAAATTATAGA
35040810 AATACCACTGGTTTGTGA
64 AATACCACTGGTTTGTGA
*
35040828 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTATAGAAA
1 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTATAGAAA
35040893 TAC
66 TAC
35040896 GCTTGACTTT
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
81 59 0.97
82 2 0.03
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTATAGAAA
TACCACTGGTTTGTGA
Found at i:35040877 original size:27 final size:26
Alignment explanation
Indices: 35040747--35040886 Score: 154
Period size: 27 Copynumber: 5.2 Consensus size: 26
35040737 TGTAGGATAG
35040747 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTA-TTTGTAA
35040774 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTA-TTTGTAA
* * * * *
35040801 AATTATCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCT-ATTTGTAA
* *
35040828 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCC-CTATTTGTAA
**
35040855 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCT-ATTTGTAA
35040882 AATTA
1 AATTA
35040887 TAGAAATACG
Statistics
Matches: 96, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 94 0.98
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (26 bp):
AATTACCAAAATACCCCTATTTGTAA
Found at i:35040885 original size:54 final size:54
Alignment explanation
Indices: 35040747--35040954 Score: 152
Period size: 54 Copynumber: 3.8 Consensus size: 54
35040737 TGTAGGATAG
* ** * *
35040747 AATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCACTGA-TTTACAAAATTACCGAAATACCCTC-AATTTGTAA
* * * ***
35040801 AATTATCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCACTGATTTACAAAATTACCGAAATACCCTCAATTTGTAA
* ** * * * *
35040855 AATTACCAAAATACCCCTGATTTACAAAATTATAGAAATACGCTTGACTTTCTAAA
1 AATTACCAAAATACCACTGATTTACAAAATTACCGAAATAC-CCTCAATTTGT-AA
* * * *
35040911 AATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCT
1 AATTACCA-AAATACCACTGATTTACAAAATTACCGAAATACCCT
35040955 TGGTTTGTAG
Statistics
Matches: 122, Mismatches: 27, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
54 76 0.62
55 11 0.09
56 35 0.29
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (54 bp):
AATTACCAAAATACCACTGATTTACAAAATTACCGAAATACCCTCAATTTGTAA
Found at i:35040893 original size:27 final size:27
Alignment explanation
Indices: 35040863--35040956 Score: 102
Period size: 27 Copynumber: 3.4 Consensus size: 27
35040853 AAAATTACCA
*
35040863 AAATACCCCTGATTTACAAAATTATAG
1 AAATACCCTTGATTTACAAAATTATAG
*
35040890 AAATACGCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTTGA-TTTAC--AAAATTATAG
* *
35040919 AAATACCATTGGTTTACAAAATTACT-G
1 AAATACCCTTGATTTACAAAATTA-TAG
35040946 AAATACCCTTG
1 AAATACCCTTG
35040957 GTTTGTAGAT
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
27 29 0.52
28 7 0.12
29 20 0.36
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATACCCTTGATTTACAAAATTATAG
Found at i:35043248 original size:27 final size:27
Alignment explanation
Indices: 35042856--35043247 Score: 502
Period size: 27 Copynumber: 14.5 Consensus size: 27
35042846 AGTACTCCCA
35042856 ATTTACAGAATTACCGTTTTACCCTC-
1 ATTTACAGAATTACCGTTTTACCCTCG
** *
35042882 AGTTTACAGAATTATTGTTTTACCCTTG
1 A-TTTACAGAATTACCGTTTTACCCTCG
* *
35042910 ATTTATAGAATTACTGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
*
35042937 ATTTATAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
** *
35042964 ATTTGTAAAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
35042991 ATTTACAGAATTACCGTTTTACCCTC-
1 ATTTACAGAATTACCGTTTTACCCTCG
** *
35043017 AGTTTACAGAATTACTATTTTACCCTTG
1 A-TTTACAGAATTACCGTTTTACCCTCG
* *
35043045 ATTTATAGAATTACCGTTTTACCC-CTA
1 ATTTACAGAATTACCGTTTTACCCTC-G
* *
35043072 ATTTACATAATTACCGTTTTACCCCCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
35043099 ATTTACATAATTATCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
*
35043126 ATTTACAGAATTACCATTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
*
35043153 ATTTACAGAATTACCATTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* * *
35043180 ATTTATAGAATTACTGTTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
35043207 ATTTACAGAATTACTGTTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTCG
*
35043234 ATTTACAAAATTAC
1 ATTTACAGAATTAC
35043248 TAAAATAGCC
Statistics
Matches: 326, Mismatches: 34, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
26 2 0.01
27 321 0.98
28 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
ATTTACAGAATTACCGTTTTACCCTCG
Found at i:35043259 original size:27 final size:27
Alignment explanation
Indices: 35043199--35043260 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
35043189 ATTACTGTTT
* ****
35043199 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
35043226 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
*
35043253 TAGCCTTG
1 TACCCTTG
35043261 GTTTGTGAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:35044515 original size:25 final size:25
Alignment explanation
Indices: 35044486--35044533 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
35044476 TTATAATATG
* * *
35044486 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
35044511 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
35044534 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:35044584 original size:9 final size:9
Alignment explanation
Indices: 35044572--35044648 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
35044562 TTTGATAAAC
35044572 ATGATATGT
1 ATGATATGT
*
35044581 ATGATATGCAC
1 ATGATATG--T
35044592 ATGATATGT
1 ATGATATGT
*
35044601 ATGATATGCAC
1 ATGATATG--T
* *
35044612 ATGACACGT
1 ATGATATGT
*
35044621 ATGATATGCAC
1 ATGATATG--T
35044632 ATGATATGT
1 ATGATATGT
35044641 ATGATATG
1 ATGATATG
35044649 CACACGAGAT
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
9 30 0.58
11 22 0.42
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34
Consensus pattern (9 bp):
ATGATATGT
Found at i:35044597 original size:11 final size:11
Alignment explanation
Indices: 35044581--35044652 Score: 57
Period size: 11 Copynumber: 7.1 Consensus size: 11
35044571 CATGATATGT
35044581 ATGATATGCAC
1 ATGATATGCAC
*
35044592 ATGATATG--T
1 ATGATATGCAC
35044601 ATGATATGCAC
1 ATGATATGCAC
* **
35044612 ATGACA--CGT
1 ATGATATGCAC
35044621 ATGATATGCAC
1 ATGATATGCAC
*
35044632 ATGATATG--T
1 ATGATATGCAC
35044641 ATGATATGCAC
1 ATGATATGCAC
35044652 A
1 A
35044653 CGAGATGTTC
Statistics
Matches: 45, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
9 22 0.49
11 23 0.51
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:35044660 original size:20 final size:20
Alignment explanation
Indices: 35044570--35044652 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
35044560 ATTTTGATAA
35044570 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
35044590 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
35044610 ACATGACACGTATGATATGC
1 ACATGATATGTATGATATGC
35044630 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
35044650 ACA
1 ACA
35044653 CGAGATGTTC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:35044795 original size:24 final size:24
Alignment explanation
Indices: 35044706--35044823 Score: 163
Period size: 23 Copynumber: 5.0 Consensus size: 24
35044696 GAGAAAGTGC
35044706 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
35044730 -AAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
35044753 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
35044776 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
35044800 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
35044824 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
23 50 0.58
24 19 0.22
25 17 0.20
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:35045857 original size:25 final size:24
Alignment explanation
Indices: 35045819--35045888 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
35045809 AGGAAGTGTT
*
35045819 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
* **
35045843 GAAAAGGGTTTTGCCCCAGTTTGTC
1 -AAAAGGGCTTTGCCCCAGTTTACC
35045868 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
35045889 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
24 1 0.03
25 38 0.97
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:35046095 original size:42 final size:42
Alignment explanation
Indices: 35046036--35046127 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
35046026 TAGTCTCCCC
*
35046036 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
35046078 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
35046120 AAATGGGC
1 AAATGGGC
35046128 CTAAGGGCCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:35046200 original size:31 final size:31
Alignment explanation
Indices: 35046151--35046265 Score: 162
Period size: 31 Copynumber: 3.7 Consensus size: 31
35046141 TGTTTTCGGT
* *
35046151 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGACCCAGTGATATGATTTATGA
*
35046182 AAAGTCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGACCCAGTGATATGATTTATGA
* *
35046213 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGACCCAGTGATATGATTTATGA
35046244 AAAGGCTTC-AGCCCAGT-ATATG
1 AAAGGCTTCGA-CCCAGTGATATG
35046266 TCAAGACTAA
Statistics
Matches: 76, Mismatches: 7, Indels: 3
0.88 0.08 0.03
Matches are distributed among these distances:
30 5 0.07
31 71 0.93
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTGATATGATTTATGA
Found at i:35049165 original size:17 final size:18
Alignment explanation
Indices: 35049139--35049172 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
35049129 CAATTTGGGT
35049139 CATGTAGGCC-ACACGGA
1 CATGTAGGCCTACACGGA
*
35049156 CATGTGGGCCTACACGG
1 CATGTAGGCCTACACGG
35049173 GCAGGCTACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.24, C:0.29, G:0.32, T:0.15
Consensus pattern (18 bp):
CATGTAGGCCTACACGGA
Found at i:35058735 original size:15 final size:15
Alignment explanation
Indices: 35058690--35058740 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
35058680 GAAAAATAAG
*
35058690 AAATATTATATGTCA
1 AAATATTATATGTTA
*
35058705 AAAGT-TT-TA-ATTA
1 AAA-TATTATATGTTA
35058718 AAATATTATATGTTA
1 AAATATTATATGTTA
35058733 AAATATTA
1 AAATATTA
35058741 ATAAATGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
12 1 0.03
13 7 0.24
14 4 0.14
15 16 0.55
16 1 0.03
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (15 bp):
AAATATTATATGTTA
Found at i:35059608 original size:26 final size:26
Alignment explanation
Indices: 35059572--35059837 Score: 169
Period size: 26 Copynumber: 10.2 Consensus size: 26
35059562 TGTACTTGAA
*
35059572 TAGCAGGCCTTGAACTGGTGTTTATT
1 TAGCAGGCCTTGAGCTGGTGTTTATT
* * *
35059598 TAGCAGGCCTTGGGCTAGTGTTTCTT
1 TAGCAGGCCTTGAGCTGGTGTTTATT
* * *
35059624 TAGTAGGCCATGAGATGGTGTTTATT
1 TAGCAGGCCTTGAGCTGGTGTTTATT
* * * * *
35059650 TAGTAGGCCTTGGGCCGATGTTTCTT
1 TAGCAGGCCTTGAGCTGGTGTTTATT
** * *
35059676 TAGCAAACCTTGAGCCGATGTTTATT
1 TAGCAGGCCTTGAGCTGGTGTTTATT
* * *
35059702 TAACAGGCCTTTG-GCAGGTGTTTCTT
1 TAGCAGGCC-TTGAGCTGGTGTTTATT
* * * **
35059728 TAGCAAGCTTTAAGCCAGTGTTTATT
1 TAGCAGGCCTTGAGCTGGTGTTTATT
* * * *
35059754 TAGCACGCCTTGTA-CTAGTGGTTATG
1 TAGCAGGCCTTG-AGCTGGTGTTTATT
* * *
35059780 GAGCAAGCTTTGAGCTGGTGTTTATT
1 TAGCAGGCCTTGAGCTGGTGTTTATT
* * **
35059806 TAG-ATGGCTTTGAGATGGTGAATATT
1 TAGCA-GGCCTTGAGCTGGTGTTTATT
35059832 TAGCAG
1 TAGCAG
35059838 ATACTATGTA
Statistics
Matches: 183, Mismatches: 51, Indels: 12
0.74 0.21 0.05
Matches are distributed among these distances:
25 4 0.02
26 174 0.95
27 5 0.03
ACGTcount: A:0.20, C:0.15, G:0.27, T:0.37
Consensus pattern (26 bp):
TAGCAGGCCTTGAGCTGGTGTTTATT
Found at i:35060423 original size:26 final size:28
Alignment explanation
Indices: 35060394--35060458 Score: 70
Period size: 26 Copynumber: 2.5 Consensus size: 28
35060384 CTTATGTGAT
35060394 AAATGGTTT-TAT-GAAAT-GACTATACG
1 AAATGGTTTATATAGAAATAGA-TATACG
*
35060420 AAAT-GTTTATATAGAAATAGATATATG
1 AAATGGTTTATATAGAAATAGATATACG
35060447 -AATGG-TTATATA
1 AAATGGTTTATATA
35060459 AAGAGTTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
25 4 0.12
26 17 0.50
27 11 0.32
28 2 0.06
ACGTcount: A:0.43, C:0.03, G:0.17, T:0.37
Consensus pattern (28 bp):
AAATGGTTTATATAGAAATAGATATACG
Done.