Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 117 of 325
Found at i:35062006 original size:9 final size:9
Alignment explanation
Indices: 35061992--35062016 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
35061982 TACATGCATA
35061992 TGGCCCATT
1 TGGCCCATT
35062001 TGGCCCATT
1 TGGCCCATT
35062010 TGGCCCA
1 TGGCCCA
35062017 ATTCACATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.36, G:0.24, T:0.28
Consensus pattern (9 bp):
TGGCCCATT
Found at i:35062043 original size:29 final size:29
Alignment explanation
Indices: 35062001--35062080 Score: 106
Period size: 29 Copynumber: 2.8 Consensus size: 29
35061991 ATGGCCCATT
* *
35062001 TGGCCCATTTGGCCCAATTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
35062030 TGGCCCATTAGGCCCAAATCACCTTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
**
35062059 TGGCCCGCTAGGCCCAAATCAC
1 TGGCCCATTAGGCCCAAATCAC
35062081 CTTATATTCA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:35062172 original size:40 final size:40
Alignment explanation
Indices: 35062128--35062206 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
35062118 AGCATCAATT
* *
35062128 ATCAAATTTTGCAGATTTTGGGCCCAACAGCCCATCGGGC
1 ATCAAATTTTGCAGATTATGAGCCCAACAGCCCATCGGGC
**
35062168 ATCAAATTTTGCCTATTATGAGCCCAACAGCCCATCGGG
1 ATCAAATTTTGCAGATTATGAGCCCAACAGCCCATCGGG
35062207 TCCATTAAGC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
ATCAAATTTTGCAGATTATGAGCCCAACAGCCCATCGGGC
Found at i:35062357 original size:16 final size:15
Alignment explanation
Indices: 35062332--35062362 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
35062322 TACCGCAGCC
35062332 CAACTTTCAGCTTTT
1 CAACTTTCAGCTTTT
35062347 CAACATTTCAGCTTTT
1 CAAC-TTTCAGCTTTT
35062363 ATCGATCTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.23, C:0.26, G:0.06, T:0.45
Consensus pattern (15 bp):
CAACTTTCAGCTTTT
Found at i:35080019 original size:30 final size:30
Alignment explanation
Indices: 35079984--35080043 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
35079974 AACATTTTAA
35079984 AGTTAGTATCAATATTTAATTTCTTGTTAT
1 AGTTAGTATCAATATTTAATTTCTTGTTAT
35080014 AGTTAGTATCAATATTTAATTTCTTGTTAT
1 AGTTAGTATCAATATTTAATTTCTTGTTAT
35080044 TGATACTGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (30 bp):
AGTTAGTATCAATATTTAATTTCTTGTTAT
Found at i:35081230 original size:18 final size:18
Alignment explanation
Indices: 35081207--35081262 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
35081197 AGTCTATTCC
**
35081207 ATATCATTTGTTATTTCA
1 ATATCATTTCCTATTTCA
35081225 ATATCATTTCCTATTTCA
1 ATATCATTTCCTATTTCA
*
35081243 ACATCATTTTCC-ATTTCA
1 ATATCA-TTTCCTATTTCA
35081261 AT
1 AT
35081263 GTTATTATCT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
18 28 0.85
19 5 0.15
ACGTcount: A:0.29, C:0.20, G:0.02, T:0.50
Consensus pattern (18 bp):
ATATCATTTCCTATTTCA
Found at i:35084869 original size:29 final size:29
Alignment explanation
Indices: 35084841--35084942 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
35084831 CCTCCGAGCT
** * *
35084841 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATTTTTCCAGCA
* *
35084870 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATTTTTCCAGCA
35084899 CGCACACTTAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATTTTTCCAGCA
35084928 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
35084943 GATCTCGTCA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATTTTTCCAGCA
Found at i:35087047 original size:38 final size:39
Alignment explanation
Indices: 35086995--35087137 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
35086985 GAATGTTCGA
35086995 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
35087034 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
35087072 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
35087111 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
35087138 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:35087083 original size:77 final size:79
Alignment explanation
Indices: 35086996--35087177 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
35086986 AATGTTCGAG
35086996 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
35087059 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
35087073 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
35087138 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
35087152 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
35087178 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:35095585 original size:29 final size:29
Alignment explanation
Indices: 35095513--35095577 Score: 130
Period size: 29 Copynumber: 2.2 Consensus size: 29
35095503 GTGACGAGAT
35095513 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
35095542 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
35095571 TGGCACT
1 TGGCACT
35095578 GGGTGTGCGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:35104667 original size:24 final size:24
Alignment explanation
Indices: 35104635--35104717 Score: 148
Period size: 24 Copynumber: 3.5 Consensus size: 24
35104625 AATCTCAAAT
*
35104635 GCACTATGTGTACGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
35104659 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
35104683 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
35104707 GCACTATGTGT
1 GCACTATGTGT
35104718 CCGAACATAA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 56 1.00
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:35104734 original size:48 final size:48
Alignment explanation
Indices: 35104635--35104743 Score: 157
Period size: 48 Copynumber: 2.3 Consensus size: 48
35104625 AATCTCAAAT
* * ** *
35104635 GCACTATGTGTACGATTTACTATGGCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTCCGACATAATATA
35104683 GCACTATGTGTGCGATTTACTATGGCACTATGTGTCCGAACATAATA-A
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTCCG-ACATAATATA
35104731 GCACTATGTGTGC
1 GCACTATGTGTGC
35104744 AACGTTTGGT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
48 50 0.91
49 5 0.09
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTCCGACATAATATA
Found at i:35116909 original size:27 final size:27
Alignment explanation
Indices: 35116877--35116998 Score: 138
Period size: 27 Copynumber: 4.5 Consensus size: 27
35116867 TGAAAACACC
35116877 ACCGAAATA-CCCTCGGTTTGTAAAATT
1 ACCGAAATACCCCT-GGTTTGTAAAATT
* *
35116904 ACCGAAATACCCCTGGGTTGTAAGATT
1 ACCGAAATACCCCTGGTTTGTAAAATT
* * *
35116931 ATCGAAATACCCCCGATTTGTAAAATT
1 ACCGAAATACCCCTGGTTTGTAAAATT
** *
35116958 ACAAAAATACCCCTAGTTTGTAAAATT
1 ACCGAAATACCCCTGGTTTGTAAAATT
**
35116985 ACTAAAATACCCCT
1 ACCGAAATACCCCT
35116999 ATAGGGTAAA
Statistics
Matches: 80, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
27 76 0.95
28 4 0.05
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.28
Consensus pattern (27 bp):
ACCGAAATACCCCTGGTTTGTAAAATT
Found at i:35117007 original size:27 final size:27
Alignment explanation
Indices: 35116950--35117010 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
35116940 CCCCCGATTT
**
35116950 GTAAAATTACAAAAATACCCCTAGTTT
1 GTAAAATTACAAAAATACCCCTAGTGG
*
35116977 GTAAAATTACTAAAATACCCCTA-TAGG
1 GTAAAATTACAAAAATACCCCTAGT-GG
35117004 GTAAAAT
1 GTAAAAT
35117011 GATTGTTCTG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 1 0.03
27 29 0.97
ACGTcount: A:0.46, C:0.16, G:0.10, T:0.28
Consensus pattern (27 bp):
GTAAAATTACAAAAATACCCCTAGTGG
Found at i:35117408 original size:43 final size:43
Alignment explanation
Indices: 35117298--35117419 Score: 136
Period size: 43 Copynumber: 2.8 Consensus size: 43
35117288 TATTGATCAG
* ** *
35117298 TTAAGGTCACACGGGTCTTACGAGACGACTGTGGACTATTCTG
1 TTAAGGTCGCACGGGTCACACGAGACGACTGTGGACTATTCTA
* ** * *
35117341 TTAAGGTTGCACGGGTTGCACGAGATGATTGTGGACTATTCTA
1 TTAAGGTCGCACGGGTCACACGAGACGACTGTGGACTATTCTA
* * *
35117384 TTAAGGTCGCACGGGTCACGCGAGACAACCGTGGAC
1 TTAAGGTCGCACGGGTCACACGAGACGACTGTGGAC
35117420 CTACCGATGG
Statistics
Matches: 63, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (43 bp):
TTAAGGTCGCACGGGTCACACGAGACGACTGTGGACTATTCTA
Found at i:35117521 original size:22 final size:22
Alignment explanation
Indices: 35117447--35117521 Score: 82
Period size: 22 Copynumber: 3.4 Consensus size: 22
35117437 CCACTTGATC
35117447 TGATTATGGCTCTGTGCCAT-T
1 TGATTATGGCTCTGTGCCATCT
** *
35117468 CTGAAGATGGCTCTGTGCCATCCC
1 -TGATTATGGCTCTGTGCCAT-CT
35117492 T-ATTATGGCTCTGTGCCATCT
1 TGATTATGGCTCTGTGCCATCT
*
35117513 TGATCATGG
1 TGATTATGG
35117522 TTTTGTACCG
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
21 2 0.05
22 40 0.93
23 1 0.02
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (22 bp):
TGATTATGGCTCTGTGCCATCT
Found at i:35117540 original size:44 final size:44
Alignment explanation
Indices: 35117449--35117540 Score: 98
Period size: 44 Copynumber: 2.1 Consensus size: 44
35117439 ACTTGATCTG
* * *
35117449 ATTATGGCTCTGTGCCATTCTGAAGATGGCTCTGTGCCATCCCT
1 ATTATGGCTCTGTGCCATTCTGAACATGGCTCTGTACCATCCAT
* * *
35117493 ATTATGGCTCTGTGCCA-TCTTGATCATGGTTTTGTACCGAT-CAT
1 ATTATGGCTCTGTGCCATTC-TGAACATGGCTCTGTACC-ATCCAT
35117537 ATTA
1 ATTA
35117541 CCTTTACTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
43 2 0.05
44 36 0.90
45 2 0.05
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (44 bp):
ATTATGGCTCTGTGCCATTCTGAACATGGCTCTGTACCATCCAT
Found at i:35117682 original size:26 final size:26
Alignment explanation
Indices: 35117643--35117719 Score: 82
Period size: 26 Copynumber: 3.0 Consensus size: 26
35117633 TTAGCTATTT
* * *
35117643 TGTTACTAGCAGCCTTGCTATGATAC
1 TGTTACTGGTAGCCTTGCTACGATAC
* *
35117669 TGTTACTGGTAGCCCTGCTACGTTAC
1 TGTTACTGGTAGCCTTGCTACGATAC
* * *
35117695 TATTACTGGTAGCTTTGCTGCGATA
1 TGTTACTGGTAGCCTTGCTACGATA
35117720 TTGGTGTGCT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.36
Consensus pattern (26 bp):
TGTTACTGGTAGCCTTGCTACGATAC
Found at i:35119884 original size:18 final size:20
Alignment explanation
Indices: 35119843--35119889 Score: 71
Period size: 18 Copynumber: 2.5 Consensus size: 20
35119833 AATTCCAAGC
*
35119843 TCAATATCAATCAATATTTT
1 TCAATATCAATCAATATTTA
35119863 TCAATATCAATC-A-ATTTA
1 TCAATATCAATCAATATTTA
35119881 TCAATATCA
1 TCAATATCA
35119890 TTCAGTTACA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 13 0.50
19 1 0.04
20 12 0.46
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (20 bp):
TCAATATCAATCAATATTTA
Found at i:35119937 original size:18 final size:18
Alignment explanation
Indices: 35119889--35119968 Score: 97
Period size: 18 Copynumber: 4.4 Consensus size: 18
35119879 TATCAATATC
* *
35119889 ATTCAGTTACAATCTATT
1 ATTCAGTAACAATCAATT
** * *
35119907 ATTCAACAGCAATCAGTT
1 ATTCAGTAACAATCAATT
35119925 ATTCAGTAACAATCAATT
1 ATTCAGTAACAATCAATT
*
35119943 ATTCAGTAACAGTCAATT
1 ATTCAGTAACAATCAATT
35119961 ATTCAGTA
1 ATTCAGTA
35119969 CCTTTATTCA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 51 1.00
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (18 bp):
ATTCAGTAACAATCAATT
Found at i:35119963 original size:36 final size:36
Alignment explanation
Indices: 35119880--35119968 Score: 97
Period size: 36 Copynumber: 2.4 Consensus size: 36
35119870 CAATCAATTT
* * *
35119880 ATCAATATCATTCAGTTACAATCTATTATTCAACAGCA
1 ATCAAT-T-ATTCAGTAACAATCAATTATTCAACAACA
* **
35119918 ATCAGTTATTCAGTAACAATCAATTATTCAGTAACA
1 ATCAATTATTCAGTAACAATCAATTATTCAACAACA
*
35119954 GTCAATTATTCAGTA
1 ATCAATTATTCAGTA
35119969 CCTTTATTCA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
36 37 0.86
37 1 0.02
38 5 0.12
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (36 bp):
ATCAATTATTCAGTAACAATCAATTATTCAACAACA
Found at i:35126861 original size:27 final size:27
Alignment explanation
Indices: 35126840--35126892 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
35126830 CTGTGGTAAC
35126840 TAATGAAAGAATAACCTTTGTGGCGAA
1 TAATGAAAGAATAACCTTTGTGGCGAA
* *
35126867 TAATGGAAGACTAACCTTTGTGGCGA
1 TAATGAAAGAATAACCTTTGTGGCGA
35126893 TCTCTGAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (27 bp):
TAATGAAAGAATAACCTTTGTGGCGAA
Found at i:35130320 original size:20 final size:20
Alignment explanation
Indices: 35130297--35130349 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
35130287 ATACTTATTC
35130297 TAAAGTATCAATACATTATG
1 TAAAGTATCAATACATTATG
* *
35130317 TAAAGTATCAACACTTTATG
1 TAAAGTATCAATACATTATG
**
35130337 -ATGGTATCAATAC
1 TAAAGTATCAATAC
35130350 CATTTTGAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 10 0.36
20 18 0.64
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (20 bp):
TAAAGTATCAATACATTATG
Found at i:35131162 original size:21 final size:21
Alignment explanation
Indices: 35131138--35131178 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
35131128 TTTACACGAA
35131138 ATGAACATATA-ACACAATCTT
1 ATGAACATATATA-ACAATCTT
*
35131159 ATGAATATATATAACAATCT
1 ATGAACATATATAACAATCT
35131179 ATCTTATAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.49, C:0.15, G:0.05, T:0.32
Consensus pattern (21 bp):
ATGAACATATATAACAATCTT
Found at i:35131286 original size:18 final size:18
Alignment explanation
Indices: 35131263--35131301 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
35131253 CAATAGTTTA
35131263 TTTACCATTTAATAACGT
1 TTTACCATTTAATAACGT
*
35131281 TTTACCATTTAATACCGT
1 TTTACCATTTAATAACGT
35131299 TTT
1 TTT
35131302 CATTTTTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.28, C:0.18, G:0.05, T:0.49
Consensus pattern (18 bp):
TTTACCATTTAATAACGT
Found at i:35137591 original size:34 final size:32
Alignment explanation
Indices: 35137535--35137597 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 32
35137525 AAATTATTTA
35137535 TATTAAAATTTTATTAATATATTTTTAATATAT
1 TATTAAAATTTTATTAATATA-TTTTAATATAT
*
35137568 TATTGAAAATTTTA-TATTAATATTTTAATA
1 TATT-AAAATTTTATTAAT-ATATTTTAATA
35137598 ATAAATACAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 15 0.56
34 12 0.44
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (32 bp):
TATTAAAATTTTATTAATATATTTTAATATAT
Found at i:35138890 original size:10 final size:11
Alignment explanation
Indices: 35138868--35138892 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
35138858 AAATATTTTT
35138868 AAAATATTAAA
1 AAAATATTAAA
35138879 AAAATATTAAA
1 AAAATATTAAA
35138890 AAA
1 AAA
35138893 CACATGTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAATATTAAA
Found at i:35143129 original size:41 final size:40
Alignment explanation
Indices: 35142981--35143130 Score: 162
Period size: 39 Copynumber: 3.8 Consensus size: 40
35142971 TCGATTGTCT
* * *
35142981 TCGCACAATTGCCTTC-GGAATTAGCCCGGATTTAATAAC
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAC
* * * *
35143020 TCGCACGAATGCCTTCGGGACTTA-ACCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAC
* *
35143059 TCGCACAAATGCCTTCGGGAGTT-GACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGACTTAG-CCCGGATTTAGTAAC
* *
35143099 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGACTTAGCCCGGA
35143131 CACCATTCGA
Statistics
Matches: 90, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
39 46 0.51
40 17 0.19
41 26 0.29
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAC
Found at i:35151093 original size:40 final size:39
Alignment explanation
Indices: 35151035--35151227 Score: 140
Period size: 40 Copynumber: 4.8 Consensus size: 39
35151025 GGATATAGCG
* * * *
35151035 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATAGCCCGGTT-TAGTA
* *
35151075 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAATA
1 ACTCGCACAATTGCCTTCGGGACA-TAGCCCGG-TTTAGTA
* * *
35151115 ACTCGCACGAA-TGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATAGCCCGG-TTTAGTA
* * * *
35151155 ACTCGCACAAATGCCTTCGGGA-GTTGACCCGGATTTAGTC
1 ACTCGCACAATTGCCTTCGGGACATAG-CCCGG-TTTAGTA
* ** *
35151195 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAATTGCCTTCGGGACATAGCCCGG
35151228 ACACCATTCG
Statistics
Matches: 123, Mismatches: 22, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
39 4 0.03
40 90 0.73
41 27 0.22
42 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
ACTCGCACAATTGCCTTCGGGACATAGCCCGGTTTAGTA
Found at i:35151147 original size:80 final size:80
Alignment explanation
Indices: 35151035--35151227 Score: 217
Period size: 80 Copynumber: 2.4 Consensus size: 80
35151025 GGATATAGCG
* * * * * * *
35151035 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
35151100 -AGCCCGGATTTAATA
66 GA-CCCGGATTTAATA
* * * *
35151115 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
* *
35151180 GACCCGGATTTAGTC
66 GACCCGGATTTAATA
* * *
35151195 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACGAATGCCTTCGGGACTTAGCCCGG
35151228 ACACCATTCG
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
80 67 0.71
81 27 0.29
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
GACCCGGATTTAATA
Found at i:35151216 original size:41 final size:39
Alignment explanation
Indices: 35151077--35151228 Score: 160
Period size: 40 Copynumber: 3.8 Consensus size: 39
35151067 TTATAGTGAT
* *
35151077 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAATAAC
1 TCGCACAAATGCCTTCGGGAATTA-CCCGGATTTAGTAAC
* * * *
35151117 TCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* *
35151157 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* * *
35151197 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGAATTA-CCCGGA
35151229 CACCATTCGA
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
40 67 0.71
41 27 0.29
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
TCGCACAAATGCCTTCGGGAATTACCCGGATTTAGTAAC
Found at i:35156686 original size:47 final size:47
Alignment explanation
Indices: 35156635--35157075 Score: 774
Period size: 47 Copynumber: 9.4 Consensus size: 47
35156625 GATGTACAAG
* *
35156635 GTGTGTATATGTGATAAGGCCGAATGGCTAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
35156682 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
35156729 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
35156776 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
35156823 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
35156870 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
35156917 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
35156964 GTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
35157011 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGGATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
35157058 GTGTATAAATGTGATAAG
1 GTGTGTATATGTGATAAG
35157076 TCCCGAAGGG
Statistics
Matches: 379, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 379 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:35174799 original size:25 final size:24
Alignment explanation
Indices: 35174762--35174814 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
35174752 ATGTTCCAGT
*
35174762 GAGCCATGTCAGGAAGCTCACAAA
1 GAGCCATATCAGGAAGCTCACAAA
* *
35174786 GAGCCTATATCAGGACGCTCATAAA
1 GAGCC-ATATCAGGAAGCTCACAAA
35174811 GAGC
1 GAGC
35174815 TGCGTTTGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.36, C:0.25, G:0.25, T:0.15
Consensus pattern (24 bp):
GAGCCATATCAGGAAGCTCACAAA
Found at i:35175937 original size:13 final size:13
Alignment explanation
Indices: 35175919--35175947 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
35175909 TACTAACTCC
35175919 ATTTAATGGTCTA
1 ATTTAATGGTCTA
35175932 ATTTAATGGTCTA
1 ATTTAATGGTCTA
35175945 ATT
1 ATT
35175948 ACCATATAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.07, G:0.14, T:0.48
Consensus pattern (13 bp):
ATTTAATGGTCTA
Found at i:35177539 original size:12 final size:12
Alignment explanation
Indices: 35177522--35177595 Score: 67
Period size: 12 Copynumber: 6.2 Consensus size: 12
35177512 CTTCAAGAAG
*
35177522 ATGATGATGATA
1 ATGATGATAATA
35177534 ATGATGATAATA
1 ATGATGATAATA
* *
35177546 ATAATAATAATA
1 ATGATGATAATA
* *
35177558 ATAATAATAATA
1 ATGATGATAATA
* *
35177570 ATAATAATAATA
1 ATGATGATAATA
* *
35177582 ATAATAATAATA
1 ATGATGATAATA
35177594 AT
1 AT
35177596 AATCTACAAT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 59 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (12 bp):
ATGATGATAATA
Found at i:35177546 original size:3 final size:3
Alignment explanation
Indices: 35177540--35177598 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
35177530 GATAATGATG
35177540 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
35177588 ATA ATA ATA AT
1 ATA ATA ATA AT
35177599 CTACAATTTC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:35180499 original size:47 final size:46
Alignment explanation
Indices: 35180433--35180607 Score: 155
Period size: 46 Copynumber: 3.8 Consensus size: 46
35180423 TCACTTGCGT
* * *
35180433 GAGCTAGTATAAGACATGTCTGGGACATGCATTGGCCACATTATGA-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTAAGAC
* *
35180479 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGG--CATTAAGAC
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATTAAGAC
**
35180525 GAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CC-TCGAGAC
1 GA--GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAAGAC
* *
35180571 ATAAGGC-AGTCTAAGACATGTCTGGGACATGCATCGG
1 --GA-GCTAGTGTAAGACATGTCTGGGACATGCATCGG
35180608 ATACGAGATA
Statistics
Matches: 109, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
45 7 0.06
46 55 0.50
47 29 0.27
48 18 0.17
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAAGAC
Found at i:35180615 original size:46 final size:44
Alignment explanation
Indices: 35180442--35180646 Score: 146
Period size: 46 Copynumber: 4.5 Consensus size: 44
35180432 TGAGCTAGTA
* * *
35180442 TAAGACATGTCTGGGACATGCATTGGCCA-C-ATTATGAGAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGG-CATCGA-GAT-A-AGCCAGTC
* ** * * * *
35180488 TAAGACCATGTCTGGGATATGGCATCGGCATTAAGACGAGTGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGA-TA-AGCCAGTC
* *
35180536 TAAGACATGTCTGGGACATGCATCGGCCTCGAGACATAAGGCAGTC
1 TAAGACATGTCTGGGACATGCATCGGCATCGAG--ATAAGCCAGTC
* *
35180582 TAAGACATGTCTGGGACATGCATCGG-ATACGAGATATGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCAT-CGAGATAAGCCAGTC
*
35180626 TAAGACCATGTCTAGGACATG
1 TAAGA-CATGTCTGGGACATG
35180647 ACACCGGAGA
Statistics
Matches: 129, Mismatches: 21, Indels: 19
0.76 0.12 0.11
Matches are distributed among these distances:
44 13 0.10
45 15 0.12
46 50 0.39
47 29 0.22
48 21 0.16
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (44 bp):
TAAGACATGTCTGGGACATGCATCGGCATCGAGATAAGCCAGTC
Found at i:35181797 original size:20 final size:21
Alignment explanation
Indices: 35181758--35181797 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
35181748 GAATTAATGG
*
35181758 CTACAGGGGCGTGTTGCCCTT
1 CTACACGGGCGTGTTGCCCTT
*
35181779 CTACACGGGTGTG-TGCCCT
1 CTACACGGGCGTGTTGCCCT
35181798 GTTTCAGAGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.10, C:0.30, G:0.33, T:0.28
Consensus pattern (21 bp):
CTACACGGGCGTGTTGCCCTT
Found at i:35187344 original size:50 final size:50
Alignment explanation
Indices: 35187269--35187366 Score: 196
Period size: 50 Copynumber: 2.0 Consensus size: 50
35187259 GTTTGAAAGC
35187269 TTAAAAATTTCAACAACTTTAAGCCTTCACAAGTAAGTGATTTTCTAAGT
1 TTAAAAATTTCAACAACTTTAAGCCTTCACAAGTAAGTGATTTTCTAAGT
35187319 TTAAAAATTTCAACAACTTTAAGCCTTCACAAGTAAGTGATTTTCTAA
1 TTAAAAATTTCAACAACTTTAAGCCTTCACAAGTAAGTGATTTTCTAA
35187367 CCCTTTGTTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (50 bp):
TTAAAAATTTCAACAACTTTAAGCCTTCACAAGTAAGTGATTTTCTAAGT
Found at i:35188148 original size:46 final size:46
Alignment explanation
Indices: 35188011--35188185 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 46
35188001 TCACTTGCGT
* * * * *
35188011 GAGCTAGTATAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGA
* * * * *
35188057 GAGCCAGTGTAAGACCATGTCCGGGATATGGCATCGACATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGA
* *
35188105 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-A
* *
35188152 -AGCCAGTCTAAGACAAGTCTGGGACATGCATCGG
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG
35188186 ATACGAGATG
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 56 0.54
47 25 0.24
48 22 0.21
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGA
Found at i:35191761 original size:48 final size:48
Alignment explanation
Indices: 35191687--35192526 Score: 656
Period size: 48 Copynumber: 17.0 Consensus size: 48
35191677 CAAGACAAAT
* * *
35191687 ATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
35191735 ATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
35191783 ATATGTATATGTGGTAAAGCCGAATGGTTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
35191831 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
35191879 ATATGTATATGTGGTAAAGCCGTATGCCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * * * ** *
35191927 ATATGTGAAATAT-AT-ATG-AGATATGTATA-TGTGGTAAAGT-CGTATG-G
1 ATATGT-ATATGTGGTAAAGCCGA-ATGGCTAGTGT-G-AAA-TATGTATGAG
* * * * * * ** *
35191974 CTAATGTGA-A-AT-ATATATCAGATATGTATA-TGTGGTAAAGCCGTATGGCTAGTGTG
1 AT-ATGT-ATATGTGGTAAAGCCGA-ATGGCTAGTGT-G-AAA----TAT-G-TA-TGAG
* * * * * * * ** * * * *
35192030 AAATATATATGAGAT-ATG--TATATGTGGTAAAGCCG-AATGGCTAGTGTGAA
1 ATATGTATATGTGGTAAAGCCGA-ATG-GCTAGTG-TGAAAT--AT-GTATGAG
* * * * * * * * *
35192080 ATATGTATGACATAT-GTATATATG--GTAAAGCCGAATG-GCTAGTGTGAAAT-ATG
1 ATATGTAT---ATGTGGTA-A-A-GCCG-AATGGCTAGTGTG-AAATATG-TATGA-G
*
35192133 TATGAGATATGTATATGTGGTAAAGCCGAATGACTAGTGTGAAATATGTATGAG
1 -AT-----ATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
35192187 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
35192235 ATATGTATATGTGGTAAAGCCGTATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
35192283 ATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
35192331 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
35192379 ATATATATATATGTGGTAAAGCCGTATGGCTAATGTGAAATATGTATGAG
1 --ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
35192429 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * *
35192477 ATATGTATATTTGGTAAAGCAGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
35192525 AT
1 AT
35192527 GTGTGTATAT
Statistics
Matches: 658, Mismatches: 85, Indels: 98
0.78 0.10 0.12
Matches are distributed among these distances:
46 8 0.01
47 11 0.02
48 497 0.76
49 5 0.01
50 54 0.08
51 3 0.00
52 5 0.01
53 8 0.01
54 17 0.03
55 26 0.04
56 12 0.02
57 6 0.01
59 6 0.01
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:35191932 original size:20 final size:20
Alignment explanation
Indices: 35191909--35191952 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
35191899 CGTATGCCTA
*
35191909 ATGTGAAATATGTATGAGAT
1 ATGTGAAATATATATGAGAT
35191929 ATGTGAAATATATATGAGAT
1 ATGTGAAATATATATGAGAT
35191949 ATGT
1 ATGT
35191953 ATATGTGGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.41, C:0.00, G:0.23, T:0.36
Consensus pattern (20 bp):
ATGTGAAATATATATGAGAT
Found at i:35191945 original size:68 final size:68
Alignment explanation
Indices: 35191862--35192000 Score: 233
Period size: 68 Copynumber: 2.0 Consensus size: 68
35191852 GAATGGCTAG
* * *
35191862 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGTATGCCTAATGTGAAATATGTATGAG
1 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGTATGCCTAATGTGAAATATATATCAG
35191927 ATA
66 ATA
* *
35191930 TGTGAAATATATATGAGATATGTATATGTGGTAAAGTCGTATGGCTAATGTGAAATATATATCAG
1 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGTATGCCTAATGTGAAATATATATCAG
35191995 ATA
66 ATA
35191998 TGT
1 TGT
35192001 ATATGTGGTA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 66 1.00
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.35
Consensus pattern (68 bp):
TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGTATGCCTAATGTGAAATATATATCAG
ATA
Found at i:35191958 original size:116 final size:116
Alignment explanation
Indices: 35191814--35192048 Score: 389
Period size: 116 Copynumber: 2.0 Consensus size: 116
35191804 GAATGGTTAG
* * * *
35191814 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATCAG
*
35191879 ATATGTATATGTGGTAAAGCCGTATGCCTAATGTGAAATATGTATGAGATA
66 ATATGTATATGTGGTAAAGCCGTATGCCTAATGTGAAATATATATGAGATA
* *
35191930 TGTGAAATATATATGAGATATGTATATGTGGTAAAGTCGTATGGCTAATGTGAAATATATATCAG
1 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATCAG
* *
35191995 ATATGTATATGTGGTAAAGCCGTATGGCTAGTGTGAAATATATATGAGATA
66 ATATGTATATGTGGTAAAGCCGTATGCCTAATGTGAAATATATATGAGATA
35192046 TGT
1 TGT
35192049 ATATGTGGTA
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
116 110 1.00
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.34
Consensus pattern (116 bp):
TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATCAG
ATATGTATATGTGGTAAAGCCGTATGCCTAATGTGAAATATATATGAGATA
Found at i:35192043 original size:164 final size:164
Alignment explanation
Indices: 35191766--35192096 Score: 545
Period size: 164 Copynumber: 2.0 Consensus size: 164
35191756 AAATGGCTAG
* * * * *
35191766 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAGTGTGAAATATGTATGAG
1 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATCAG
*
35191831 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
66 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAA
* *
35191896 AGCCGTATGCCTAATGTGAAATATGTATGAGATA
131 AGCCGAATGCCTAATGTGAAATATGTATGACATA
* *
35191930 TGTGAAATATATATGAGATATGTATATGTGGTAAAGTCGTATGGCTAATGTGAAATATATATCAG
1 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATCAG
*
35191995 ATATGTATATGTGGTAAAGCCGTATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAA
66 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAA
* *
35192060 AGCCGAATGGCTAGTGTGAAATATGTATGACATA
131 AGCCGAATGCCTAATGTGAAATATGTATGACATA
35192094 TGT
1 TGT
35192097 ATATATGGTA
Statistics
Matches: 154, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
164 154 1.00
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (164 bp):
TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATCAG
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAA
AGCCGAATGCCTAATGTGAAATATGTATGACATA
Found at i:35192716 original size:37 final size:37
Alignment explanation
Indices: 35192666--35192768 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
35192656 GGAAATATAT
35192666 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
35192703 TCCGGGTAAGACCCGATGACTACGTGGGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
35192740 TCCGGGTAAGACCCGATAACTACGAGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
35192769 GGACTATTCG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.22
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:35193997 original size:40 final size:40
Alignment explanation
Indices: 35193941--35194346 Score: 596
Period size: 40 Copynumber: 10.2 Consensus size: 40
35193931 GAGAATTGAG
35193941 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
35193981 GGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
35194021 AGTGATATATCCGGGCTAAGTCTCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
35194061 AGTGATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
35194101 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
35194141 AGTGATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
35194181 AGTGATATATCCGAGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
35194221 AGTGTTATATCTGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
35194261 GGTGATGTGTCCGAGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
35194301 AGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
35194341 GGTGAT
1 AGTGAT
35194347 GTGTATTCGG
Statistics
Matches: 326, Mismatches: 40, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 326 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:35194558 original size:25 final size:25
Alignment explanation
Indices: 35194508--35194558 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
35194498 TGTGTAACAA
* *
35194508 CAAATGAATAGCGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
35194533 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
35194558 C
1 C
35194559 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:35196508 original size:28 final size:28
Alignment explanation
Indices: 35196462--35196530 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
35196452 TTTAAAACCC
*
35196462 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
35196489 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
35196517 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
35196531 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:35201214 original size:48 final size:48
Alignment explanation
Indices: 35201143--35201862 Score: 1228
Period size: 48 Copynumber: 15.0 Consensus size: 48
35201133 CAAGACAAAT
* *
35201143 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
35201191 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
35201239 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
35201287 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
** * * *
35201335 ATATGTATATGTGGTAAATTCGTATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
35201383 ATATGTATATGTGGTAAAGCCGTATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
35201431 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
35201479 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
35201527 ATATGTATATGTGGTAAAGCCGAATGACTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
35201575 ATATGTATATGTGGTAAAGTCGTATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
35201623 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
35201671 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAT--G
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * * *
35201717 ATATATATGTGTGGTAAAGCCGTATGGCTAATGTTAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
35201765 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
35201813 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
35201861 AT
1 AT
35201863 GTGTGTATAT
Statistics
Matches: 635, Mismatches: 35, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 40 0.06
48 595 0.94
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:35202052 original size:37 final size:37
Alignment explanation
Indices: 35202002--35202104 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
35201992 GGAAATATAT
35202002 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
35202039 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
35202076 TCCGGGTAAGACCCGATAACTACGAGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
35202105 GGACTATTCG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.22
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:35205595 original size:15 final size:15
Alignment explanation
Indices: 35205575--35205605 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
35205565 GAGATATGAG
35205575 TCTAGTTATGTTGCA
1 TCTAGTTATGTTGCA
35205590 TCTAGTTATGTTGCA
1 TCTAGTTATGTTGCA
35205605 T
1 T
35205606 TGACGGTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.19, T:0.48
Consensus pattern (15 bp):
TCTAGTTATGTTGCA
Found at i:35212529 original size:32 final size:33
Alignment explanation
Indices: 35212483--35212546 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
35212473 AACAGCGGGT
35212483 ACTGGGCCGAAG-CCCTTTTCAGA-ATACAGTAA
1 ACTGGGCCGAAGCCCCTTTTCAGATA-ACAGTAA
**
35212515 ACTGGGCCTTAGCCCCTTTTCAGATAACAGTA
1 ACTGGGCCGAAGCCCCTTTTCAGATAACAGTA
35212547 TAGCCTATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 10 0.36
33 17 0.61
34 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (33 bp):
ACTGGGCCGAAGCCCCTTTTCAGATAACAGTAA
Found at i:35212870 original size:65 final size:64
Alignment explanation
Indices: 35212795--35212924 Score: 242
Period size: 65 Copynumber: 2.0 Consensus size: 64
35212785 AGTCCTATGC
35212795 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAAGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACA-TCAAACATGCATTCAAGTCAACCTT
*
35212860 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACATCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACATCAAACATGCATTCAAGTCAACCTT
35212924 A
1 A
35212925 ACCCTAGGGG
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
64 25 0.39
65 39 0.61
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.25
Consensus pattern (64 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACATCAAACATGCATTCAAGTCAACCTT
Found at i:35212983 original size:27 final size:26
Alignment explanation
Indices: 35212927--35212983 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
35212917 CAACCTTAAC
* * *
35212927 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
35212953 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
35212980 CCTA
1 CCTA
35212984 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:35225316 original size:46 final size:45
Alignment explanation
Indices: 35225249--35225423 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
35225239 TGTAACCCGC
** *
35225249 CCATAAGTGAACTCAAACTCAACTCAACGAGCTCGGCCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
* *
35225295 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGCCCAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCA--T
* *** * *
35225341 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
35225388 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
35225424 ATGCCCAAAC
Statistics
Matches: 106, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
44 4 0.04
46 66 0.62
47 31 0.29
49 5 0.05
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:35225443 original size:46 final size:46
Alignment explanation
Indices: 35225300--35225443 Score: 143
Period size: 46 Copynumber: 3.1 Consensus size: 46
35225290 CGCATCCATA
*
35225300 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * * *
35225349 --CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
*
35225393 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
35225439 AGTGA
1 AGTGA
35225444 CATGTCACTT
Statistics
Matches: 75, Mismatches: 14, Indels: 15
0.72 0.13 0.14
Matches are distributed among these distances:
44 8 0.11
46 32 0.43
47 30 0.40
49 5 0.07
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:35227969 original size:23 final size:23
Alignment explanation
Indices: 35227926--35227970 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
35227916 AATTGATGAT
**
35227926 TAAAAAAAATAAAATCTAAAGTC
1 TAAAAAAAATAAAATAAAAAGTC
35227949 TAAAAAATAA-AAAATAAAAAGT
1 TAAAAAA-AATAAAATAAAAAGT
35227971 AGTTTTAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.20
Consensus pattern (23 bp):
TAAAAAAAATAAAATAAAAAGTC
Found at i:35236326 original size:29 final size:29
Alignment explanation
Indices: 35236270--35236400 Score: 86
Period size: 29 Copynumber: 4.5 Consensus size: 29
35236260 ATTTAAGCCT
***
35236270 GCACACACAGTGCCATA-CCCTCCGAGCTC
1 GCACACACAGTGCCATATTTTTCC-AGCTC
* * * *
35236299 GCATACCCAGTGCCGTATTTTTCCAGCTT
1 GCACACACAGTGCCATATTTTTCCAGCTC
* *
35236328 GCACACATAGTGTCATATTTTTCCAGCAT-
1 GCACACACAGTGCCATATTTTTCCAGC-TC
** * * *
35236357 GCACACTTAGTGCCTTATATTTCCAGCAC
1 GCACACACAGTGCCATATTTTTCCAGCTC
**
35236386 GCACACTTAGTGCCA
1 GCACACACAGTGCCA
35236401 ATCTCGTCAC
Statistics
Matches: 81, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
29 77 0.95
30 4 0.05
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACACAGTGCCATATTTTTCCAGCTC
Found at i:35238057 original size:27 final size:27
Alignment explanation
Indices: 35238027--35238223 Score: 155
Period size: 27 Copynumber: 7.3 Consensus size: 27
35238017 TTAATTTACC
** * *
35238027 AAATTACCAAAATACCCTCAATTAGAA
1 AAATTACCAAAATACCCTCGGTTTGTA
*
35238054 AAATTACCAAAACACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
*
35238081 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
* *
35238108 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GGTTTGTA
** ***
35238135 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
*** **
35238162 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
* * * *
35238189 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAATACCCTCGGTTTGTA
*
35238216 GAATTACC
1 AAATTACC
35238224 GTTTTACCTC
Statistics
Matches: 141, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
26 1 0.01
27 139 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.28
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGGTTTGTA
Found at i:35238273 original size:27 final size:27
Alignment explanation
Indices: 35238250--35238380 Score: 165
Period size: 27 Copynumber: 4.9 Consensus size: 27
35238240 CAAAATTATT
*
35238250 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
35238277 AAAATAACCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * * *
35238304 AAAATGCCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
35238331 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
35238358 GAGATACCCTTGTAGGGTA-AATT
1 GAAATACCCCTGTAGGGTAGAATT
35238381 TACCATTTTG
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
26 4 0.04
27 85 0.96
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:35238547 original size:16 final size:16
Alignment explanation
Indices: 35238526--35238556 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
35238516 CAAATATGGG
*
35238526 CATGACATTTTGCATA
1 CATGACATGTTGCATA
35238542 CATGACATGTTGCAT
1 CATGACATGTTGCAT
35238557 GGGTTGGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:35238950 original size:22 final size:22
Alignment explanation
Indices: 35238898--35238959 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
35238888 GCCAATTATT
**
35238898 CTGATTATGGCTTTACGCCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
35238920 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
*
35238942 CTGATTATGGCTGTGTGC
1 CTGATTATGGCTTTGTGC
35238960 GGTTATTGTG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
21 1 0.03
22 31 0.94
23 1 0.03
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:35239276 original size:25 final size:25
Alignment explanation
Indices: 35239248--35239308 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
35239238 ATTCACATTA
*
35239248 TGATTCTGATTTTGTTACCTAATAC
1 TGATTCTGATTTTGTCACCTAATAC
35239273 TGATTCTGATTTTGTCACCTAATAC
1 TGATTCTGATTTTGTCACCTAATAC
* *
35239298 TAATTATGATT
1 TGATTCTGATT
35239309 CTGATTTTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.48
Consensus pattern (25 bp):
TGATTCTGATTTTGTCACCTAATAC
Found at i:35239313 original size:6 final size:6
Alignment explanation
Indices: 35239304--35239382 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
35239294 ATACTAATTA
* *
35239304 TGATTC TGATTT TGATTC TG-TTACC TGATAC TGATTC TGATTC TG-TTACC
1 TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATT--C
* * *
35239354 TGATTC TGATTT TGATTC TCATTT TGATT
1 TGATTC TGATTC TGATTC TGATTC TGATT
35239383 TTAGTTCTGA
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
5 4 0.07
6 45 0.78
7 6 0.10
8 3 0.05
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.52
Consensus pattern (6 bp):
TGATTC
Found at i:35239332 original size:25 final size:25
Alignment explanation
Indices: 35239304--35239372 Score: 120
Period size: 25 Copynumber: 2.8 Consensus size: 25
35239294 ATACTAATTA
35239304 TGATTCTGATTTTGATTCTGTTACC
1 TGATTCTGATTTTGATTCTGTTACC
* *
35239329 TGATACTGATTCTGATTCTGTTACC
1 TGATTCTGATTTTGATTCTGTTACC
35239354 TGATTCTGATTTTGATTCT
1 TGATTCTGATTTTGATTCT
35239373 CATTTTGATT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.17, C:0.16, G:0.16, T:0.51
Consensus pattern (25 bp):
TGATTCTGATTTTGATTCTGTTACC
Found at i:35239335 original size:37 final size:37
Alignment explanation
Indices: 35239272--35239361 Score: 101
Period size: 37 Copynumber: 2.4 Consensus size: 37
35239262 TTACCTAATA
*
35239272 CTGATTCTGATTTTGTCACCTAATACTAATTATGATT
1 CTGATTCTGATTCTGTCACCTAATACTAATTATGATT
* * * * *
35239309 CTGATTTTGATTCTGTTACCTGATACTGATTCTGATT
1 CTGATTCTGATTCTGTCACCTAATACTAATTATGATT
35239346 CTG-TTACCTGATTCTG
1 CTGATT--CTGATTCTG
35239362 ATTTTGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
36 2 0.05
37 34 0.77
38 8 0.18
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGTCACCTAATACTAATTATGATT
Found at i:35239339 original size:31 final size:31
Alignment explanation
Indices: 35239248--35239345 Score: 94
Period size: 31 Copynumber: 3.2 Consensus size: 31
35239238 ATTCACATTA
* *
35239248 TGATTCTGATTTTGTTACCTAATACTGATTC
1 TGATTTTGATTCTGTTACCTAATACTGATTC
* **
35239279 TGATTTTG-TCACCTAATA-CTAATTA-TGATTC
1 TGATTTTGAT--TCTGTTACCTAA-TACTGATTC
*
35239310 TGATTTTGATTCTGTTACCTGATACTGATTC
1 TGATTTTGATTCTGTTACCTAATACTGATTC
35239341 TGATT
1 TGATT
35239346 CTGTTACCTG
Statistics
Matches: 52, Mismatches: 9, Indels: 12
0.71 0.12 0.16
Matches are distributed among these distances:
30 7 0.13
31 39 0.75
32 6 0.12
ACGTcount: A:0.23, C:0.15, G:0.13, T:0.48
Consensus pattern (31 bp):
TGATTTTGATTCTGTTACCTAATACTGATTC
Found at i:35239345 original size:62 final size:62
Alignment explanation
Indices: 35239248--35239382 Score: 180
Period size: 62 Copynumber: 2.2 Consensus size: 62
35239238 ATTCACATTA
* * *
35239248 TGATTCTGATTTTGTTACCTAATACTGATTCTGATTTTGTCACCTAATACTAATTATGATTC
1 TGATTTTGATTCTGTTACCTAATACTGATTCTGATTCTGTCACCTAATACTAATTATGATTC
* * * * * *
35239310 TGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTGATTCTGATTTTGATTC
1 TGATTTTGATTCTGTTACCTAATACTGATTCTGATTCTGTCACCTAATACTAATTATGATTC
*
35239372 TCATTTTGATT
1 TGATTTTGATT
35239383 TTAGTTCTGA
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (62 bp):
TGATTTTGATTCTGTTACCTAATACTGATTCTGATTCTGTCACCTAATACTAATTATGATTC
Found at i:35239363 original size:31 final size:31
Alignment explanation
Indices: 35239248--35239379 Score: 86
Period size: 31 Copynumber: 4.5 Consensus size: 31
35239238 ATTCACATTA
35239248 TGATTCTGATTTTGTTACCT-A-----ATAC
1 TGATTCTGATTTTGTTACCTGATTCTGATAC
* * * *
35239273 TGATTCTGATTTTGTCACCTAATACTAATTA-
1 TGATTCTGATTTTGTTACCTGATTCTGA-TAC
35239304 TGATTCTGATTTTGATT--CTG-TTACCTGATAC
1 TGATTCTGATTTTG-TTACCTGATT--CTGATAC
* **
35239335 TGATTCTGATTCTGTTACCTGATTCTGATTT
1 TGATTCTGATTTTGTTACCTGATTCTGATAC
*
35239366 TGATTCTCATTTTG
1 TGATTCTGATTTTG
35239380 ATTTTAGTTC
Statistics
Matches: 83, Mismatches: 10, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
25 19 0.23
26 1 0.01
29 1 0.01
30 6 0.07
31 48 0.58
32 6 0.07
33 2 0.02
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (31 bp):
TGATTCTGATTTTGTTACCTGATTCTGATAC
Found at i:35245507 original size:50 final size:49
Alignment explanation
Indices: 35245379--35245508 Score: 163
Period size: 50 Copynumber: 2.6 Consensus size: 49
35245369 CTGGTACGCA
* * * **
35245379 TAGTAGCCTACACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCAACAGTATAATACACG
* * *
35245428 TAGTAGCCTACACTTAGTACTACATACGTGACCTCACCA-TATAATACATG
1 TAGTAGCCTACACTTAGTACTACACACGTGA-C-CAACAGTATAATACACG
35245478 TAGTAGCCTACACTTAGTACTACACACGTGA
1 TAGTAGCCTACACTTAGTACTACACACGTGA
35245509 TCACAGTTTT
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
49 28 0.40
50 38 0.54
51 4 0.06
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTACACTTAGTACTACACACGTGACCAACAGTATAATACACG
Found at i:35245562 original size:101 final size:99
Alignment explanation
Indices: 35245379--35245565 Score: 250
Period size: 101 Copynumber: 1.9 Consensus size: 99
35245369 CTGGTACGCA
* * *
35245379 TAGTAGCCTACACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTACACTTA
1 TAGTAGCCTACACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTACACTTA
* *
35245444 GTACTACATACGTGACCTCACCATATAATACATG
66 GTACTACACACGCGACCTCACCATATAATACATG
* * * *
35245478 TAGTAGCCTACACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTACACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTACAC
*
35245542 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
35245566 AATAGATCAT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
98 4 0.05
99 30 0.40
101 41 0.55
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTACACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTACACTTA
GTACTACACACGCGACCTCACCATATAATACATG
Found at i:35254806 original size:64 final size:64
Alignment explanation
Indices: 35254725--35254909 Score: 180
Period size: 67 Copynumber: 2.9 Consensus size: 64
35254715 AGACATTATG
* * *
35254725 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATATAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
35254789 ATGTAGCTAGGTCGCATGCGTGGCT-CCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
35254853 TAA
62 TAA
* * * *
35254856 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGCT
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGCT
35254910 GAACTCTATG
Statistics
Matches: 98, Mismatches: 16, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 20 0.20
64 23 0.23
65 4 0.04
66 18 0.18
67 32 0.33
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:35256759 original size:51 final size:48
Alignment explanation
Indices: 35256683--35256814 Score: 147
Period size: 51 Copynumber: 2.7 Consensus size: 48
35256673 ACAGGTCGCA
*
35256683 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTCGATCAC
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAA-TT-GATCAC
* *** * * * *
35256733 GTGTGTAGTACTAAGTGCAAGCTACTACATGTATCGGATAATTGGTCGC
1 -TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAATTGATCAC
*
35256782 AGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
35256815 TAGATAGCTT
Statistics
Matches: 66, Mismatches: 15, Indels: 3
0.79 0.18 0.04
Matches are distributed among these distances:
48 27 0.41
49 4 0.06
50 2 0.03
51 33 0.50
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAATTGATCAC
Found at i:35272844 original size:41 final size:42
Alignment explanation
Indices: 35272761--35272872 Score: 127
Period size: 41 Copynumber: 2.7 Consensus size: 42
35272751 TGCCAAAAAG
* * * *
35272761 CCCAACTATGGTATTACATGAAGTCTCATATCGATACCATAT
1 CCCAAATATGGTCTTACACGTAGTCTCATATCGATACCATAT
* * *
35272803 CCCAAATATGGTCTTACA-GTAGTCTCATATCTATGCTATAT
1 CCCAAATATGGTCTTACACGTAGTCTCATATCGATACCATAT
* * *
35272844 CCTAGATATGGTCTTACACATAGTCTCAT
1 CCCAAATATGGTCTTACACGTAGTCTCAT
35272873 TAACCCTATT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
41 35 0.58
42 25 0.42
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.34
Consensus pattern (42 bp):
CCCAAATATGGTCTTACACGTAGTCTCATATCGATACCATAT
Found at i:35275154 original size:22 final size:22
Alignment explanation
Indices: 35275126--35275181 Score: 112
Period size: 22 Copynumber: 2.5 Consensus size: 22
35275116 AATGAGGGCA
35275126 GTGTCGTGACACCAGTATTGTG
1 GTGTCGTGACACCAGTATTGTG
35275148 GTGTCGTGACACCAGTATTGTG
1 GTGTCGTGACACCAGTATTGTG
35275170 GTGTCGTGACAC
1 GTGTCGTGACAC
35275182 TGGGCTACGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.18, C:0.20, G:0.32, T:0.30
Consensus pattern (22 bp):
GTGTCGTGACACCAGTATTGTG
Found at i:35276534 original size:2 final size:2
Alignment explanation
Indices: 35276523--35276555 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
35276513 ATGTAAGCCC
*
35276523 AT AT -T AT AT AT AT AT AC AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
35276556 GGCATTGGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:35286148 original size:2 final size:2
Alignment explanation
Indices: 35286096--35286137 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
35286086 AATGTGAATC
*
35286096 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
35286138 TCGATTATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:35286389 original size:56 final size:55
Alignment explanation
Indices: 35286241--35286392 Score: 205
Period size: 56 Copynumber: 2.7 Consensus size: 55
35286231 ATCTATATGA
* * * * *
35286241 GGCATCGACATGTGAATCCGATATATGTGTGCAAGAAAGACGACGTTTTATACGTC
1 GGCATCGATATGTG-ATTCGATATATGTGTGCGAGTAAGACCACGTTTTATACGTC
*
35286297 GGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTTTTATACGTT
1 GGCATCGATATGTGATTC-GATATATGTGTGCGAGTAAGACCACGTTTTATACGTC
* *
35286353 GGCATCGATATGTGACTTCGATATATGTATGTGAGTAAGA
1 GGCATCGATATGTGA-TTCGATATATGTGTGCGAGTAAGA
35286393 ACTTGTCTGG
Statistics
Matches: 86, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
55 3 0.03
56 80 0.93
57 3 0.03
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (55 bp):
GGCATCGATATGTGATTCGATATATGTGTGCGAGTAAGACCACGTTTTATACGTC
Found at i:35292499 original size:56 final size:56
Alignment explanation
Indices: 35292397--35292606 Score: 215
Period size: 56 Copynumber: 3.8 Consensus size: 56
35292387 ATGTATATGA
* * ** * * * * *
35292397 GGCATCGACATGTGAATATGATATATGTGTACGAGAAAGACGACGTTTTATACGTC
1 GGCATCGATATGTGATTCCGATATATGTGTGCAAGTAAGACCACGTTTTATACGTT
* * ** *
35292453 GGCATCAATATGTGATTCCGATATATGTGTGCAAGTAAGCCCACGTTCAATACATT
1 GGCATCGATATGTGATTCCGATATATGTGTGCAAGTAAGACCACGTTTTATACGTT
* * * *
35292509 AGCATTGATATGTGATTCCAATATATGTGTGCAACTAAGACCACGTTTTATACGTT
1 GGCATCGATATGTGATTCCGATATATGTGTGCAAGTAAGACCACGTTTTATACGTT
* * *
35292565 GGCATGGATATGTGACTT-TGATATATGTGTGCGAGTAAGACC
1 GGCATCGATATGTGA-TTCCGATATATGTGTGCAAGTAAGACC
35292607 CTGTCTGGGA
Statistics
Matches: 124, Mismatches: 29, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
56 122 0.98
57 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (56 bp):
GGCATCGATATGTGATTCCGATATATGTGTGCAAGTAAGACCACGTTTTATACGTT
Found at i:35294852 original size:27 final size:27
Alignment explanation
Indices: 35294820--35295099 Score: 353
Period size: 27 Copynumber: 10.4 Consensus size: 27
35294810 GGATAAGTTA
* *
35294820 TAGAATTACCGAAATACCCCTATAAGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* * *
35294847 TAGAATTACTGAAATACACGTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* *
35294874 TAGAATTACTGAAATACCCCTGTAGGA
1 TAGAATTACCGAAATACCCCTGTAGGG
*
35294901 TAGAATTACCGAAATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* * * *
35294928 TAGAATTTCAGAAATACTCTTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
** *
35294955 TAGAATTATTGAAATAGCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
*
35294982 TAGAATTACCGAAATACCCCTGTAGGA
1 TAGAATTACCGAAATACCCCTGTAGGG
* *
35295009 TAGAATTATCGAAATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
*
35295036 TAGAAATACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* * *
35295063 TAGAATTACCGAGATACCCTTGTGGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
*
35295090 TAAAATTACC
1 TAGAATTACC
35295100 ATTTTGCCCC
Statistics
Matches: 218, Mismatches: 35, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 218 1.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.26
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCCTGTAGGG
Found at i:35295794 original size:27 final size:26
Alignment explanation
Indices: 35295760--35295889 Score: 80
Period size: 27 Copynumber: 4.6 Consensus size: 26
35295750 TCTGCTGGCC
35295760 TCGCCACATATATCTGTTCTGGTGACT
1 TCGCCACA-ATATCTGTTCTGGTGACT
* ** *
35295787 TCGTCACAATATCTGGCAGCCTCGGTGGCT
1 TCGCCACAATATCT-G--TTCT-GGTGACT
* *
35295817 TCGCCACATATATATACATGTTCTGGTGGCC
1 TCGCCAC--A-ATAT-C-TGTTCTGGTGACT
* *
35295848 TAGCCACAATATCTATATCTGGTGACT
1 TCGCCACAATATCTGT-TCTGGTGACT
*
35295875 TCGTCACAATATCTG
1 TCGCCACAATATCTG
35295890 GCAGCCTCGC
Statistics
Matches: 78, Mismatches: 15, Indels: 20
0.69 0.13 0.18
Matches are distributed among these distances:
26 8 0.10
27 29 0.37
28 4 0.05
29 3 0.04
30 12 0.15
31 12 0.15
32 3 0.04
33 4 0.05
34 2 0.03
35 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.32
Consensus pattern (26 bp):
TCGCCACAATATCTGTTCTGGTGACT
Found at i:35300956 original size:27 final size:27
Alignment explanation
Indices: 35300918--35301086 Score: 223
Period size: 27 Copynumber: 6.3 Consensus size: 27
35300908 TAAGTTGTAG
*
35300918 AATTACCGAAATACCCCTGCAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAA
* * *
35300945 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAA
** *
35300972 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAA
* *
35300999 AATTACCGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAA
* *
35301026 AATTACCGAAATACCCTTGTTGGGTAGA
1 AATTACCGAAATACCCCTGTAGGGTA-A
35301054 AA-TACCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAA
35301080 AATTACC
1 AATTACC
35301087 ATTTTTTCCC
Statistics
Matches: 125, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 3 0.02
27 120 0.96
28 2 0.02
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAA
Found at i:35301051 original size:81 final size:81
Alignment explanation
Indices: 35300914--35301086 Score: 247
Period size: 81 Copynumber: 2.1 Consensus size: 81
35300904 TGGATAAGTT
* * * **
35300914 GTAGAATTACCGAAATACCCCTGCAGGGTAAAATTACTGAAATACCCCTATAGGGTAGAATTATT
1 GTAGAATTACCGAAATACCCCTGCAGGATAAAATTACCGAAATACCCCTATAGGGTAGAAATACC
35300979 GAAATACCCCTGTAGG
66 GAAATACCCCTGTAGG
* * * * *
35300995 GTAGAATTACCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTTGGGTAGAAATACC
1 GTAGAATTACCGAAATACCCCTGCAGGATAAAATTACCGAAATACCCCTATAGGGTAGAAATACC
35301060 GAAATACCCCTGTAGG
66 GAAATACCCCTGTAGG
*
35301076 GTAAAATTACC
1 GTAGAATTACC
35301087 ATTTTTTCCC
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (81 bp):
GTAGAATTACCGAAATACCCCTGCAGGATAAAATTACCGAAATACCCCTATAGGGTAGAAATACC
GAAATACCCCTGTAGG
Found at i:35301109 original size:27 final size:27
Alignment explanation
Indices: 35301079--35301151 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
35301069 CTGTAGGGTA
* **
35301079 AAATTACCATTTTTTCCCTAGGGTGTT
1 AAATGACCATTTTGCCCCTAGGGTGTT
*
35301106 AAATGACTATTTTGCCCCTAGGGTGTT
1 AAATGACCATTTTGCCCCTAGGGTGTT
* *
35301133 AAACGACTATTTTGCCCCT
1 AAATGACCATTTTGCCCCT
35301152 CGTGCGTAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.38
Consensus pattern (27 bp):
AAATGACCATTTTGCCCCTAGGGTGTT
Found at i:35318162 original size:24 final size:24
Alignment explanation
Indices: 35318083--35318166 Score: 73
Period size: 24 Copynumber: 3.5 Consensus size: 24
35318073 ATATTCATGG
35318083 AATTGTCAAGCTGTGACAGCCCAA
1 AATTGTCAAGCTGTGACAGCCCAA
** * * * **
35318107 AATTG--ACCCTATGATATGTCTTA
1 AATTGTCAAGCTGTGACA-GCCCAA
*
35318130 ATTTGTCAAGCTGTGACAGCCCAA
1 AATTGTCAAGCTGTGACAGCCCAA
35318154 AATTGTCAAGCTG
1 AATTGTCAAGCTG
35318167 GGACCACAAA
Statistics
Matches: 41, Mismatches: 16, Indels: 6
0.65 0.25 0.10
Matches are distributed among these distances:
22 7 0.17
23 7 0.17
24 20 0.49
25 7 0.17
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (24 bp):
AATTGTCAAGCTGTGACAGCCCAA
Found at i:35319817 original size:39 final size:39
Alignment explanation
Indices: 35319763--35319906 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
35319753 GAATGTTCGA
35319763 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
35319802 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
35319841 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
35319880 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
35319907 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:35319853 original size:78 final size:79
Alignment explanation
Indices: 35319764--35319946 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
35319754 AATGTTCGAG
35319764 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
35319828 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
35319842 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
35319907 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
35319921 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
35319947 GTTTGAACGA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:35329183 original size:68 final size:70
Alignment explanation
Indices: 35329111--35329308 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
35329101 ACACCCTGTA
* * * *
35329111 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
35329173 ATAAAT
65 ATAAAT
*
35329179 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
35329244 ATAAAT
65 ATAAAT
*
35329250 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
35329309 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:35329222 original size:41 final size:41
Alignment explanation
Indices: 35329177--35329294 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
35329167 TGAAAGATAA
35329177 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
35329218 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
35329248 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
35329289 ATGTAG
1 ATGTAG
35329295 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:35329234 original size:71 final size:71
Alignment explanation
Indices: 35329145--35329308 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
35329135 GAGATGTATC
35329145 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
35329210 AGGACA
66 AGGACA
35329216 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
35329281 AGGACA
66 AGGACA
35329287 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
35329309 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:35336748 original size:68 final size:70
Alignment explanation
Indices: 35336676--35336873 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
35336666 ACACCCTGTA
* * * *
35336676 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
35336738 ATAAAT
65 ATAAAT
*
35336744 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
35336809 ATAAAT
65 ATAAAT
*
35336815 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
35336874 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:35336787 original size:41 final size:41
Alignment explanation
Indices: 35336742--35336859 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
35336732 TGAAAGATAA
35336742 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
35336783 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
35336813 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
35336854 ATGTAG
1 ATGTAG
35336860 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:35336799 original size:71 final size:71
Alignment explanation
Indices: 35336710--35336873 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
35336700 GAGATGTATC
35336710 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
35336775 AGGACA
66 AGGACA
35336781 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
35336846 AGGACA
66 AGGACA
35336852 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
35336874 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:35346110 original size:40 final size:40
Alignment explanation
Indices: 35345818--35346103 Score: 459
Period size: 40 Copynumber: 7.2 Consensus size: 40
35345808 AACCCAAGTA
* * **
35345818 CCTTTGGGATTTAG-CCGGATATAG-CAACTCTCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * * *
35345857 CCTTTGGGACTTAGCCCGGATATAGTAACTAGCAGAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
35345897 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
35345937 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
35345977 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
35346017 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
35346057 CCTTCGGGACTTAGCCCGGATATAGTCTCTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
35346097 CCTTCGG
1 CCTTCGG
35346104 ATCTTAGTCC
Statistics
Matches: 232, Mismatches: 13, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 13 0.06
40 219 0.94
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:35347493 original size:13 final size:13
Alignment explanation
Indices: 35347475--35347500 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35347465 ATTTTTATTT
35347475 TTAACATAAAATA
1 TTAACATAAAATA
35347488 TTAACATAAAATA
1 TTAACATAAAATA
35347501 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:35350945 original size:40 final size:40
Alignment explanation
Indices: 35350900--35351067 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
35350890 CGGAATACAA
35350900 CCGGATATAATCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
35350940 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACGAATGCCTTCGGGTCTTAGC
* ** *
35350980 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACGAA-TGCCTTCGGGTCTTAGC
** * ** * * *
35351020 CCGGATATAATTTCCAGCATTAACGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACGAATGCCTTCGGGTCTTAGC
35351060 CCGGATAT
1 CCGGATAT
35351068 CATTCAATTT
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:35357509 original size:40 final size:40
Alignment explanation
Indices: 35357260--35357502 Score: 388
Period size: 39 Copynumber: 6.2 Consensus size: 40
35357250 AACCCAAGTA
* * *
35357260 CCTTCAGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
35357299 CCTTCGGGACTTAG-CCGGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
35357338 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
35357377 CCTTCGGGACTTAGCCCGGATATAGTCACTAG-ACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
35357416 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
35357456 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
35357496 CCTTCGG
1 CCTTCGG
35357503 ATCTTAGTCC
Statistics
Matches: 191, Mismatches: 9, Indels: 7
0.92 0.04 0.03
Matches are distributed among these distances:
38 1 0.01
39 119 0.62
40 71 0.37
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:35361085 original size:14 final size:14
Alignment explanation
Indices: 35361066--35361100 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
35361056 TTAAATCTGT
*
35361066 TAAAAAGATAAAAA
1 TAAAAAGAAAAAAA
*
35361080 TAAAAATAAAAAAA
1 TAAAAAGAAAAAAA
35361094 TAAAAAG
1 TAAAAAG
35361101 TAGTTTGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (14 bp):
TAAAAAGAAAAAAA
Found at i:35363608 original size:75 final size:78
Alignment explanation
Indices: 35363516--35363703 Score: 283
Period size: 75 Copynumber: 2.4 Consensus size: 78
35363506 AATGTTCGAG
*
35363516 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGGTA-CCGGGCTAAGCCCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCA
35363580 A-T-TGCAAGCTA
66 ATTGTGCAAGCTA
*
35363591 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGTGAGCTATGATACCCGGGCTAAGCCCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCA
* * *
35363656 ATTGTGCGAGTTG
66 ATTGTGCAAGCTA
* *
35363669 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
35363704 GGTTACCATA
Statistics
Matches: 101, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
75 42 0.42
76 21 0.21
77 1 0.01
78 21 0.21
79 16 0.16
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.22
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCA
ATTGTGCAAGCTA
Found at i:35363640 original size:39 final size:39
Alignment explanation
Indices: 35363516--35363703 Score: 274
Period size: 39 Copynumber: 4.9 Consensus size: 39
35363506 AATGTTCGAG
35363516 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
35363555 TGGTA-CCGGGCTAAGCCCGAAGGCAA-T-TGCAAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
35363591 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGTGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
35363630 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
35363669 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
35363704 GGTTACCATA
Statistics
Matches: 133, Mismatches: 12, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
36 12 0.09
37 22 0.17
38 22 0.17
39 60 0.45
40 17 0.13
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:35363719 original size:40 final size:40
Alignment explanation
Indices: 35363522--35363733 Score: 177
Period size: 39 Copynumber: 5.5 Consensus size: 40
35363512 CGAGTGATAT
* ***
35363522 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTATGGT-A
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * ** *
35363560 CCGGGCTAAG-CCCGAAGGCAA-T-TGCAAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * ** *
35363597 CCGGGCTAAG-CCCGAAGGCAATTGTGTGAGCTATGATAC
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*** *
35363636 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * *
35363675 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*
35363715 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
35363734 TGTTTTGAAC
Statistics
Matches: 151, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
36 11 0.07
37 22 0.15
38 22 0.15
39 56 0.37
40 40 0.26
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.21
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
Found at i:35371667 original size:39 final size:39
Alignment explanation
Indices: 35371597--35371786 Score: 310
Period size: 39 Copynumber: 4.9 Consensus size: 39
35371587 AATGTTCGAG
35371597 TGATATCCGGGCTAAG-CCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
35371635 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
35371674 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
35371713 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
35371752 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
35371787 GGTTACCATA
Statistics
Matches: 142, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
38 15 0.11
39 110 0.77
40 17 0.12
ACGTcount: A:0.24, C:0.23, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:35378979 original size:23 final size:23
Alignment explanation
Indices: 35378953--35378997 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
35378943 CTACAGGAAA
35378953 CTGAATGACGCCACAAGAAAAGG
1 CTGAATGACGCCACAAGAAAAGG
35378976 CTGAATGACGCCACAAGAAAAG
1 CTGAATGACGCCACAAGAAAAG
35378998 ATCACTTCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.44, C:0.22, G:0.24, T:0.09
Consensus pattern (23 bp):
CTGAATGACGCCACAAGAAAAGG
Found at i:35382561 original size:7 final size:6
Alignment explanation
Indices: 35382525--35382560 Score: 63
Period size: 6 Copynumber: 5.8 Consensus size: 6
35382515 TTCAAACTAC
35382525 TTTTTA TTTTTTA TTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA -TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
35382561 TTAGAAGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:35391989 original size:29 final size:29
Alignment explanation
Indices: 35391956--35392029 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
35391946 CCTTCGAGCT
35391956 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
35391985 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
35392014 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
35392030 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:35391990 original size:58 final size:58
Alignment explanation
Indices: 35391897--35392029 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
35391887 ATACTCGATT
* * * * *
35391897 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
35391955 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
35392013 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
35392030 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:35399867 original size:29 final size:29
Alignment explanation
Indices: 35399834--35399907 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
35399824 CCTTCGAGCT
35399834 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
35399863 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
35399892 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
35399908 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:35399868 original size:58 final size:58
Alignment explanation
Indices: 35399775--35399907 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
35399765 ATACTCGATT
* * * * *
35399775 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
35399833 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
35399891 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
35399908 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:35410756 original size:47 final size:44
Alignment explanation
Indices: 35410696--35410816 Score: 129
Period size: 44 Copynumber: 2.7 Consensus size: 44
35410686 TATTATGAGT
*
35410696 GCCAGAGTAAGACATGTCTGGGACATGCGAT-GGCCTCGATAGAGAT-A
1 GCCAGTGTAAGACATGTCTGGGACATGC-ATCGG-CT--A-AGAGATGA
* * * *
35410743 GCCAGTGTAAGACATGTCTAGGACACGCATCGGCTAAGAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGA
*
35410787 GCTAGTGTAAGACATGTCTGGGACATGCAT
1 GCCAGTGTAAGACATGTCTGGGACATGCAT
35410817 TAGCACGCAT
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
43 5 0.08
44 28 0.44
46 4 0.06
47 27 0.42
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGA
Found at i:35413623 original size:27 final size:28
Alignment explanation
Indices: 35413567--35413636 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
35413557 AAACTTGTAC
35413567 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
35413595 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
35413622 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
35413637 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:35413647 original size:27 final size:27
Alignment explanation
Indices: 35413567--35413648 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
35413557 AAACTTGTAC
* *
35413567 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
35413595 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
35413622 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
35413649 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:35420578 original size:27 final size:28
Alignment explanation
Indices: 35420522--35420591 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
35420512 AAACTTGTAC
35420522 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
35420550 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
35420577 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
35420592 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:35420602 original size:27 final size:27
Alignment explanation
Indices: 35420522--35420603 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
35420512 AAACTTGTAC
* *
35420522 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
35420550 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
35420577 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
35420604 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:35428437 original size:27 final size:27
Alignment explanation
Indices: 35428404--35428502 Score: 128
Period size: 27 Copynumber: 3.7 Consensus size: 27
35428394 AAAGTACTCC
35428404 CGATTTACAAAATTACCATTTTACCCT
1 CGATTTACAAAATTACCATTTTACCCT
* *
35428431 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAAAATTACCATTTTACCCT
* * *
35428458 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAAAATTACCATTTTACCCT
*
35428485 TGATTTACAAAATTACCA
1 CGATTTACAAAATTACCA
35428503 AAATACCCCT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
26 1 0.02
27 59 0.97
28 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.38
Consensus pattern (27 bp):
CGATTTACAAAATTACCATTTTACCCT
Found at i:35428445 original size:54 final size:54
Alignment explanation
Indices: 35428385--35428510 Score: 130
Period size: 54 Copynumber: 2.3 Consensus size: 54
35428375 CTCGACTTGT
35428385 AAAATTACCAAAGTACTCC-CGATTTACAAAATTACCATTTTACCCTCAG-TTTAC
1 AAAATTACCAAAGTAC-CCTCGATTTACAAAATTACCATTTTACCCT-AGATTTAC
* * *** * * * *
35428439 AGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTTGATTTAC
1 AAAATTACCAAAGTACCCTCGATTTACAAAATTACCATTTTACCCTAGATTTAC
*
35428493 AAAATTACCAAAATACCC
1 AAAATTACCAAAGTACCC
35428511 CTGGTTTGTA
Statistics
Matches: 56, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
53 3 0.05
54 53 0.95
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.34
Consensus pattern (54 bp):
AAAATTACCAAAGTACCCTCGATTTACAAAATTACCATTTTACCCTAGATTTAC
Found at i:35428682 original size:27 final size:27
Alignment explanation
Indices: 35428493--35428675 Score: 260
Period size: 27 Copynumber: 6.8 Consensus size: 27
35428483 CTTGATTTAC
35428493 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
35428520 AAAACTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
35428547 AAAATTACCAAAATACCCCAGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
35428574 AAAATTTCCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * *
35428601 AAAATTACCAAAATACTCATGGTTTGC
1 AAAATTACCAAAATACCCCTGGTTTGT
* **
35428628 AAAATTACTAAAATACCCCT-GTAGGGT
1 AAAATTACCAAAATACCCCTGGT-TTGT
*
35428655 AAAATTACCGAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
35428676 TAGGGTAGAA
Statistics
Matches: 137, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
26 2 0.01
27 135 0.99
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:35432366 original size:18 final size:18
Alignment explanation
Indices: 35432345--35432386 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
35432335 AGTCATTTAG
*
35432345 AAAATAGTTAGTCATATT
1 AAAACAGTTAGTCATATT
* *
35432363 AAAACATTTAGTTATATT
1 AAAACAGTTAGTCATATT
35432381 AAAACA
1 AAAACA
35432387 TTATTAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (18 bp):
AAAACAGTTAGTCATATT
Found at i:35432387 original size:18 final size:18
Alignment explanation
Indices: 35432352--35432388 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
35432342 TAGAAAATAG
35432352 TTAGTCATATTAAAACAT
1 TTAGTCATATTAAAACAT
*
35432370 TTAGTTATATTAAAACAT
1 TTAGTCATATTAAAACAT
35432388 T
1 T
35432389 ATTAATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.43, C:0.08, G:0.05, T:0.43
Consensus pattern (18 bp):
TTAGTCATATTAAAACAT
Done.