Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 120 of 325
Found at i:36027077 original size:48 final size:48
Alignment explanation
Indices: 36026932--36027201 Score: 244
Period size: 48 Copynumber: 5.7 Consensus size: 48
36026922 GAGTAAACTA
* * * * *
36026932 CCGAGGCCATGTCCCAAATATGGTCTTACACTG-CTCACATGTCGAGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATGTCAATG
* * * * *
36026979 CCGATGCCATGTCCCAGA-ATGGTCTTACAC-AAGCTCACATGTCGAGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGA-CTCTCATGTCAATG
* * * *
36027026 CCAATGCCATGTCCCAACCATGGTCTTACACTGACTCTCGTCTCAATG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATGTCAATG
* * * * ** *
36027074 CCAATGCCATGTTCCAAACATGGTCTTACTCTGGCTCTCATAACATTG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATGTCAATG
* * * *
36027122 CCGATCCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-T-ATGTGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATGTCA-AT-G
*
36027170 CCGATGCCATGTCCCAGACATGGTCTTACACT
1 CCGATGCCATGTCCCAAACATGGTCTTACACT
36027202 AGTGCACACA
Statistics
Matches: 189, Mismatches: 28, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
46 13 0.07
47 46 0.24
48 129 0.68
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATGTCAATG
Found at i:36033615 original size:39 final size:39
Alignment explanation
Indices: 36033561--36033723 Score: 179
Period size: 39 Copynumber: 4.2 Consensus size: 39
36033551 ATTTGATGTG
*
36033561 TATCCGGACTTAGGGTCCGCAGGCTATGTGTTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
36033600 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * * *
36033639 TATCCGAACTTAGGGTCCACAGGCT-TCGTGCTGAAAATG
1 TATCCGGACTTAGGGTCCGCAGGCTAT-GTGCTGGAATTA
* ** * *
36033678 TATCCGGGC-TAAAGTCCCGCAGGCT-TCGTGCTGGAAATG
1 TATCCGGACTTAGGGT-CCGCAGGCTAT-GTGCTGGAATTA
36033717 TATCCGG
1 TATCCGG
36033724 GCCAAAGTCC
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
38 5 0.05
39 105 0.95
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:36033698 original size:78 final size:77
Alignment explanation
Indices: 36033616--36033796 Score: 213
Period size: 78 Copynumber: 2.3 Consensus size: 77
36033606 GACTTAGGGT
* * **
36033616 CCGCAGGCTATGTGCTGGAATTATATCCGAACTTAGGGT-CCACAGGCTTCGTGCTGAAAATGTA
1 CCGCAGGCT-TGTGCTGGAAATATATCCGAAC-CAAAGTCCCACAGGCTTCGTGCTGAAAATGTA
36033680 TCCGGGCTAAAGTC
64 TCCGGGCTAAAGTC
* ** * *
36033694 CCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTAT
1 CCGCAGGCTT-GTGCTGGAAATATATCCGAACCAAAGTCCCACAGGCTTCGTGCTGAAAATGTAT
*
36033759 CCGGGTTAAAGTC
65 CCGGGCTAAAGTC
36033772 CCGCAGGCTTTGTGCT-GATAATATA
1 CCGCAGGC-TTGTGCTGGA-AATATA
36033797 ATTTCGGGTT
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
77 6 0.07
78 80 0.91
79 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (77 bp):
CCGCAGGCTTGTGCTGGAAATATATCCGAACCAAAGTCCCACAGGCTTCGTGCTGAAAATGTATC
CGGGCTAAAGTC
Found at i:36033724 original size:39 final size:39
Alignment explanation
Indices: 36033658--36033788 Score: 226
Period size: 39 Copynumber: 3.4 Consensus size: 39
36033648 TTAGGGTCCA
*
36033658 CAGGCTTCGTGCTGAAAATGTATCCGGGCTAAAGTCCCG
1 CAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCG
*
36033697 CAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCG
1 CAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCG
*
36033736 CAGGCTTCGTGCTGGAAATGTATCCGGGTTAAAGTCCCG
1 CAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCG
*
36033775 CAGGCTTTGTGCTG
1 CAGGCTTCGTGCTG
36033789 ATAATATAAT
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 87 1.00
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (39 bp):
CAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCG
Found at i:36043020 original size:39 final size:39
Alignment explanation
Indices: 36042936--36043126 Score: 183
Period size: 39 Copynumber: 4.9 Consensus size: 39
36042926 ATATTTTATG
*
36042936 TGTATCCGGACTTAGAGTCCGCAGGCTAT-GTGCTGGAAT
1 TGTATCCGGACTTAGAGTCCGCAGGCT-TCGTGCTGGAAA
* * * * *
36042975 TATATCCGGACTTAGGGTCTGCAGGCTTCGTGCAGAAAA
1 TGTATCCGGACTTAGAGTCCGCAGGCTTCGTGCTGGAAA
* *
36043014 TGTATCCGGGC-TAAAGTCCCGCAGGCTTCGTGCTGGAAA
1 TGTATCCGGACTTAGAGT-CCGCAGGCTTCGTGCTGGAAA
* * *
36043053 TGTATCCGGGC-CAAAGTCCCGCAGGCTTCGTGCTGGAAA
1 TGTATCCGGACTTAGAGT-CCGCAGGCTTCGTGCTGGAAA
* * * *
36043092 TGTATCTGG-GTTAAAGTCCCGCAGGCTTTGTGCTG
1 TGTATCCGGACTTAGAGT-CCGCAGGCTTCGTGCTG
36043127 ATAATATAAT
Statistics
Matches: 131, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
38 5 0.04
39 126 0.96
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.26
Consensus pattern (39 bp):
TGTATCCGGACTTAGAGTCCGCAGGCTTCGTGCTGGAAA
Found at i:36043040 original size:78 final size:77
Alignment explanation
Indices: 36042936--36043134 Score: 206
Period size: 78 Copynumber: 2.5 Consensus size: 77
36042926 ATATTTTATG
* * * * ** *
36042936 TGTATCCGGACTTAGAGT-CCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGT-CTGCAG
1 TGTATCCGGGC-TAAAGTCCCGCAGGCT-TGTGCTGGAAATATATCCGGAC-CAAAGTCCCGCAG
36042999 GCTTCGTGCAGAAAA
63 GCTTCGTGCAGAAAA
* *
36043014 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCGCAGGC
1 TGTATCCGGGCTAAAGTCCCGCAGGCTT-GTGCTGGAAATATATCCGGACCAAAGTCCCGCAGGC
* *
36043079 TTCGTGCTGGAAA
65 TTCGTGCAGAAAA
* *
36043092 TGTATCTGGGTTAAAGTCCCGCAGGCTTTGTGCT-GATAATATA
1 TGTATCCGGGCTAAAGTCCCGCAGGC-TTGTGCTGGA-AATATA
36043135 ATTTCGGGTT
Statistics
Matches: 102, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
77 11 0.11
78 89 0.87
79 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (77 bp):
TGTATCCGGGCTAAAGTCCCGCAGGCTTGTGCTGGAAATATATCCGGACCAAAGTCCCGCAGGCT
TCGTGCAGAAAA
Found at i:36045024 original size:17 final size:18
Alignment explanation
Indices: 36044992--36045026 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
36044982 CGATGTAGCT
36044992 TGCCCGTGTAGGCCCACA
1 TGCCCGTGTAGGCCCACA
*
36045010 TGCCTGTGT-GGCCCACA
1 TGCCCGTGTAGGCCCACA
36045027 CGGCCTACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.14, C:0.37, G:0.29, T:0.20
Consensus pattern (18 bp):
TGCCCGTGTAGGCCCACA
Found at i:36045826 original size:25 final size:25
Alignment explanation
Indices: 36045797--36045846 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
36045787 GGATTCGAAC
36045797 ACAGAACCTCTAGCAACTCAACACT
1 ACAGAACCTCTAGCAACTCAACACT
36045822 ACAGAACCTCTAGCAACTCAACACT
1 ACAGAACCTCTAGCAACTCAACACT
36045847 CCTCCTAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.36, G:0.08, T:0.16
Consensus pattern (25 bp):
ACAGAACCTCTAGCAACTCAACACT
Found at i:36050852 original size:93 final size:93
Alignment explanation
Indices: 36050740--36050911 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
36050730 GCCCATAAGT
* *
36050740 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36050805 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
36050833 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36050898 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
36050912 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:36050907 original size:46 final size:46
Alignment explanation
Indices: 36050732--36050907 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
36050722 TGTAACCCGC
* * *
36050732 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
36050778 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
36050828 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
36050871 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
36050908 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:36052271 original size:50 final size:50
Alignment explanation
Indices: 36052197--36052450 Score: 245
Period size: 50 Copynumber: 5.2 Consensus size: 50
36052187 TCAGGATATT
36052197 ACATGGCATCAGCCTCGAGATATGAGAGCTAGTGTAAGACCATGTCTGGG
1 ACATGGCATCAGCCTCGAGATATGAGAGCTAGTGTAAGACCATGTCTGGG
* * * *
36052247 GCATGGCATCAGCCTTGAGATATGAGAGCTAGAGTAAGACCATGTCTAGG
1 ACATGGCATCAGCCTCGAGATATGAGAGCTAGTGTAAGACCATGTCTGGG
* * * * * * *
36052297 ATATGGCAT-TGGCT--TGATATGTG-TC-AGTGTAAGACCATGTCCGGG
1 ACATGGCATCAGCCTCGAGATATGAGAGCTAGTGTAAGACCATGTCTGGG
* * * *
36052342 ACATGTCATCA-ACAC-AGATAGATGAGAGCCAGTGTAAGACCATGTCTGGG
1 ACATGGCATCAGCCTCGAGAT--ATGAGAGCTAGTGTAAGACCATGTCTGGG
* ** *
36052392 ACATGGCATCAGCCTCGATATACAAGAG-TCAATGTAAGACCATGTCTGGG
1 ACATGGCATCAGCCTCGAGATATGAGAGCT-AGTGTAAGACCATGTCTGGG
*
36052442 ACATTGCAT
1 ACATGGCAT
36052451 TGACTTTGAT
Statistics
Matches: 163, Mismatches: 32, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
45 25 0.15
46 4 0.02
47 7 0.04
48 4 0.02
49 4 0.02
50 114 0.70
51 2 0.01
52 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (50 bp):
ACATGGCATCAGCCTCGAGATATGAGAGCTAGTGTAAGACCATGTCTGGG
Found at i:36052398 original size:95 final size:95
Alignment explanation
Indices: 36052227--36052400 Score: 233
Period size: 95 Copynumber: 1.8 Consensus size: 95
36052217 TATGAGAGCT
* * * * * *
36052227 AGTGTAAGACCATGTCTGGGGCATGGCATCAGCCTTGAGATATGAGAGCTAGAGTAAGACCATGT
1 AGTGTAAGACCATGTCCGGGACATGGCATCAACCTAGAGAGATGAGAGCCAGAGTAAGACCATGT
*
36052292 CTAGGATATGGCATTGGCTTGATATGTGTC
66 CTAGGACATGGCATTGGCTTGATATGTGTC
* * *
36052322 AGTGTAAGACCATGTCCGGGACATGTCATCAACAC-AGATAGATGAGAGCCAGTGTAAGACCATG
1 AGTGTAAGACCATGTCCGGGACATGGCATCAAC-CTAGAGAGATGAGAGCCAGAGTAAGACCATG
*
36052386 TCTGGGACATGGCAT
65 TCTAGGACATGGCAT
36052401 CAGCCTCGAT
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
95 66 0.99
96 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (95 bp):
AGTGTAAGACCATGTCCGGGACATGGCATCAACCTAGAGAGATGAGAGCCAGAGTAAGACCATGT
CTAGGACATGGCATTGGCTTGATATGTGTC
Found at i:36052462 original size:50 final size:48
Alignment explanation
Indices: 36052197--36052499 Score: 168
Period size: 50 Copynumber: 6.2 Consensus size: 48
36052187 TCAGGATATT
* * * *
36052197 ACATGGCATCAGCCTCGAGATATGAGAGCTAGTGTAAGACCATGTCTGGG
1 ACATGGCATCAGCCTC--GATATCAAAGCCAATGTAAGACCATGTCTGGG
* * * * * *
36052247 GCATGGCATCAGCCTTGAGATATGAGAGCTAGA-GTAAGACCATGTCTAGG
1 ACATGGCATCAGCC-T-CGATATCAAAGCCA-ATGTAAGACCATGTCTGGG
* * * * ** * * *
36052297 ATATGGCAT-TGGCTTGATAT--GTGTCAGTGTAAGACCATGTCCGGG
1 ACATGGCATCAGCCTCGATATCAAAGCCAATGTAAGACCATGTCTGGG
* * * * * *
36052342 ACATGTCATCAACAC-AGATAGATGAGAGCCAGTGTAAGACCATGTCTGGG
1 ACATGGCATCAGC-CTCGAT--ATCAAAGCCAATGTAAGACCATGTCTGGG
*
36052392 ACATGGCATCAGCCTCGATATACAAGAGTCAATGTAAGACCATGTCTGGG
1 ACATGGCATCAGCCTCGATAT-CAA-AGCCAATGTAAGACCATGTCTGGG
* * * * * **
36052442 ACATTGCAT-TGACTTTGATATCTAAGCCAATGTAAGACCATGTCCAGG
1 ACATGGCATCAG-CCTCGATATCAAAGCCAATGTAAGACCATGTCTGGG
36052490 ACATGGCATC
1 ACATGGCATC
36052500 GGCACCTTAC
Statistics
Matches: 198, Mismatches: 40, Indels: 31
0.74 0.15 0.12
Matches are distributed among these distances:
45 25 0.13
46 3 0.02
47 6 0.03
48 34 0.17
49 7 0.04
50 122 0.62
51 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (48 bp):
ACATGGCATCAGCCTCGATATCAAAGCCAATGTAAGACCATGTCTGGG
Found at i:36063377 original size:38 final size:38
Alignment explanation
Indices: 36063326--36063773 Score: 637
Period size: 38 Copynumber: 11.7 Consensus size: 38
36063316 ATATCCGGGT
*
36063326 AGGCTTCGTGCTGGTATTATATCTGGGTTAAATCCCGC
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
*
36063364 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCAC
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
* * * * * *
36063402 AGGCTTCATGTTGGTAATATATCTGGGTTAAAGACCCGT
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAA-TCCCGC
** *
36063441 AGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCTGC
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
* *
36063479 AAGCTTTGTGCTGGTATTATATCCGGGTTAAATCCCGC
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
* *
36063517 AGGCTTCGTGCTGGTAATATATATCCGGCTTAAATCTCGC
1 AGGCTTCGTGCTGGT-AT-TATATCCGGGTTAAATCCCGC
*
36063557 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCTCGC
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
36063595 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
* * * *
36063633 AGGCTTCGTGCTGGTAATATATCTGGGTTAAATCCTGT
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
*
36063671 AGGCTTCGTACTGGTATTATATCCGGGTTAAATCCCGC
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
*
36063709 AGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCGC
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
* *
36063747 AGG-TCTAGTGCTGGTATTATATTCGGG
1 AGGCT-TCGTGCTGGTATTATATCCGGG
36063774 CCTTCGTGCC
Statistics
Matches: 366, Mismatches: 40, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
37 1 0.00
38 296 0.81
39 35 0.10
40 34 0.09
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.33
Consensus pattern (38 bp):
AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
Found at i:36063798 original size:231 final size:231
Alignment explanation
Indices: 36063326--36063768 Score: 710
Period size: 231 Copynumber: 1.9 Consensus size: 231
36063316 ATATCCGGGT
*
36063326 AGGCTTCGTGCTGGTATTATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGG
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGG
* *
36063391 TTAAATCCCACAGGCTTCATGTTGGTAATATATCTGGGTTAAAGACCCGTAGGCTTCGTGCTGGT
66 TTAAATCCCACAGGCTTCATGCTGGTAATATATCTGGGTTAAAGACCCGTAGGCTTCGTACTGGT
* * *
36063456 AAAATATCCGGGTTAAATCCTGCAAGCTTTGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGC
131 AAAATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTATTATATCCGGGATAAATCCCGCAGGC
* *
36063521 TTCGTGCTGGTAATATATATCCGGCTTAAATCTCGC
196 TTAGTGCTGGTAATATATATCCGGCTTAAATCTAGC
*
36063557 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCTCGCAGGCTTCGTGCTGGTATTATATCCGGG
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGG
* * * *
36063622 TTAAATCCCGCAGGCTTCGTGCTGGTAATATATCTGGGTTAAA-TCCTGTAGGCTTCGTACTGGT
66 TTAAATCCCACAGGCTTCATGCTGGTAATATATCTGGGTTAAAGACCCGTAGGCTTCGTACTGGT
** *
36063686 ATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCGCAGG-
131 AAAATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTATTATATCCGGGATAAATCCCGCAGGC
*
36063750 TCTAGTGCTGGTATTATAT
196 T-TAGTGCTGGTAATATAT
36063769 TCGGGCCTTC
Statistics
Matches: 195, Mismatches: 16, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
229 1 0.01
230 91 0.47
231 103 0.53
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (231 bp):
AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGG
TTAAATCCCACAGGCTTCATGCTGGTAATATATCTGGGTTAAAGACCCGTAGGCTTCGTACTGGT
AAAATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTATTATATCCGGGATAAATCCCGCAGGC
TTAGTGCTGGTAATATATATCCGGCTTAAATCTAGC
Found at i:36063814 original size:43 final size:43
Alignment explanation
Indices: 36063766--36063877 Score: 206
Period size: 43 Copynumber: 2.6 Consensus size: 43
36063756 GCTGGTATTA
36063766 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
36063809 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
36063852 TATTCGGGCCTTCATGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
36063878 GTAATGCCAG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.11, C:0.26, G:0.33, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:36067910 original size:21 final size:22
Alignment explanation
Indices: 36067877--36067920 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
36067867 ATAAAATAAT
*
36067877 AAACATATTTAA-TAATACATGA
1 AAACATATGTAATTAATA-ATGA
36067899 AAACATA-GTAATTAATAATGA
1 AAACATATGTAATTAATAATGA
36067920 A
1 A
36067921 TTTTGAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (22 bp):
AAACATATGTAATTAATAATGA
Found at i:36068095 original size:13 final size:13
Alignment explanation
Indices: 36068033--36068105 Score: 60
Period size: 14 Copynumber: 5.2 Consensus size: 13
36068023 AATATCAATT
36068033 TAATATGAAAATAA
1 TAATATG-AAATAA
36068047 TAATATGGATAATAA
1 TAATAT-GA-AATAA
36068062 T-ATACCTGAAAATATA
1 TAATA--TG-AAATA-A
36068078 TAATA-GATAATAA
1 TAATATGA-AATAA
36068091 TAATATGAAATAA
1 TAATATGAAATAA
36068104 TA
1 TA
36068106 TATTATTAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 19
0.72 0.00 0.28
Matches are distributed among these distances:
13 14 0.28
14 17 0.34
15 12 0.24
16 4 0.08
17 3 0.06
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.32
Consensus pattern (13 bp):
TAATATGAAATAA
Found at i:36068132 original size:41 final size:40
Alignment explanation
Indices: 36068029--36068146 Score: 105
Period size: 43 Copynumber: 2.9 Consensus size: 40
36068019 ATTTAATATC
* * *
36068029 AATTTAATATGAAAATAATAATATGGATAATAATATACCTGAA
1 AATTTAAAAT-AATATAATAATAT-GA-AATAATATACATGAA
* * * *
36068072 AATATATAATAGATAATAATAATATGAAATAATATATTATTAA
1 AATTTAAAATA-AT-ATAATAATATGAAATAATATA-CATGAA
36068115 AATTTAAAATAATATAATAATAT-AAA-AATATA
1 AATTTAAAATAATATAATAATATGAAATAATATA
36068147 AAAATATTAT
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
39 6 0.10
40 3 0.05
41 10 0.16
42 12 0.19
43 22 0.35
44 10 0.16
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (40 bp):
AATTTAAAATAATATAATAATATGAAATAATATACATGAA
Found at i:36068146 original size:16 final size:16
Alignment explanation
Indices: 36068122--36068173 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
36068112 TAAAATTTAA
*
36068122 AATAATATAATAATAT
1 AATAATATAAAAATAT
*
36068138 AAAAATATAAAAATAT
1 AATAATATAAAAATAT
* *
36068154 TAT-GTGATAAAAATAT
1 AATAAT-ATAAAAATAT
36068170 AATA
1 AATA
36068174 TAATAAATAA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
15 1 0.04
16 27 0.96
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (16 bp):
AATAATATAAAAATAT
Found at i:36068167 original size:50 final size:49
Alignment explanation
Indices: 36068070--36068185 Score: 123
Period size: 50 Copynumber: 2.3 Consensus size: 49
36068060 AATATACCTG
* * *
36068070 AAAAT-ATATAATAGATAATAATAATATGAAATAATATATTATTAAAATTT
1 AAAATAATATAATA-AT-ATAAAAATATGAAATAATATATTATAAAAATAT
36068120 AAAATAATATAATAATATAAAAATAT-AAA-AATATTATGTGATAAAAATAT
1 AAAATAATATAATAATATAAAAATATGAAATAATA-TAT-T-ATAAAAATAT
*
36068170 AATATAATA-AATAATA
1 AAAATAATATAATAATA
36068186 AGTAATGATA
Statistics
Matches: 58, Mismatches: 4, Indels: 9
0.82 0.06 0.13
Matches are distributed among these distances:
47 4 0.07
48 6 0.10
49 17 0.29
50 23 0.40
51 8 0.14
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (49 bp):
AAAATAATATAATAATATAAAAATATGAAATAATATATTATAAAAATAT
Found at i:36068179 original size:16 final size:16
Alignment explanation
Indices: 36068123--36068185 Score: 51
Period size: 16 Copynumber: 4.1 Consensus size: 16
36068113 AAAATTTAAA
*
36068123 ATAATATAAT-AATAT
1 ATAATATAATAAAAAT
*
36068138 A-AAAAT-ATAAAAAT
1 ATAATATAATAAAAAT
* * *
36068152 ATTATGTGATAAAAAT
1 ATAATATAATAAAAAT
36068168 ATAATATAATAAATAAT
1 ATAATATAATAAA-AAT
36068185 A
1 A
36068186 AGTAATGATA
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
13 2 0.06
14 9 0.25
15 3 0.08
16 18 0.50
17 4 0.11
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (16 bp):
ATAATATAATAAAAAT
Found at i:36068186 original size:23 final size:24
Alignment explanation
Indices: 36068077--36068186 Score: 64
Period size: 23 Copynumber: 4.6 Consensus size: 24
36068067 CTGAAAATAT
* * *
36068077 ATAATAGATAATAATAATAT-GAA
1 ATAATAAATAATAAAAATATAAAA
* * * *
36068100 ATAATATATTATTAAAAT-TTAAA
1 ATAATAAATAATAAAAATATAAAA
36068123 ATAATATAATAATATAAAAATATAAAA
1 ATAATA-AAT-A-ATAAAAATATAAAA
* ** * *
36068150 ATATTATGTGATAAAAATAT-AAT
1 ATAATAAATAATAAAAATATAAAA
36068173 ATAATAAATAATAA
1 ATAATAAATAATAA
36068187 GTAATGATAT
Statistics
Matches: 64, Mismatches: 18, Indels: 10
0.70 0.20 0.11
Matches are distributed among these distances:
22 1 0.02
23 34 0.53
24 12 0.19
26 8 0.12
27 9 0.14
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (24 bp):
ATAATAAATAATAAAAATATAAAA
Found at i:36068276 original size:23 final size:24
Alignment explanation
Indices: 36068214--36068282 Score: 79
Period size: 23 Copynumber: 2.9 Consensus size: 24
36068204 AATATTTATT
* *
36068214 AATATGATAATAGAAAATATGAAGG
1 AATATAATAATATAAAATAT-AAGG
*
36068239 AATATAAT-ATAATAAAATATAAGT
1 AATATAATAAT-ATAAAATATAAGG
36068263 AA-ATAATAATATAAAATATA
1 AATATAATAATATAAAATATA
36068283 TAATACATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
23 15 0.38
24 9 0.23
25 15 0.38
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (24 bp):
AATATAATAATATAAAATATAAGG
Found at i:36068327 original size:26 final size:27
Alignment explanation
Indices: 36068275--36068329 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
36068265 ATAATAATAT
*
36068275 AAAATATATAATACATATATATATTAA
1 AAAATATATAATACATATAAATATTAA
*
36068302 AAAATA-ATAATATATATACAAT-TTAA
1 AAAATATATAATACATATA-AATATTAA
36068328 AA
1 AA
36068330 TAAATAAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (27 bp):
AAAATATATAATACATATAAATATTAA
Found at i:36069700 original size:22 final size:22
Alignment explanation
Indices: 36069672--36069714 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
36069662 GGCATGACTA
36069672 TCCAATGGATAATCGTTACCAT
1 TCCAATGGATAATCGTTACCAT
36069694 TCCAATGGATAATCGTTACCA
1 TCCAATGGATAATCGTTACCA
36069715 AACATTTCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (22 bp):
TCCAATGGATAATCGTTACCAT
Found at i:36070397 original size:40 final size:40
Alignment explanation
Indices: 36070311--36070526 Score: 233
Period size: 40 Copynumber: 5.5 Consensus size: 40
36070301 AAGTATCTTT
* ** * * *
36070311 GGGATTTAG-CCGGATATAACCACTCGCAC-AAGGCTTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTC
* * * *
36070349 GGGTCTTAGCCCGGATATGGTCACTAGCATAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTC
* *
36070389 GGGACTTAGCCCGGATATAATCGCTAGCACAAAAGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTC
* * *
36070429 GGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTC-ACTAGCACAAAAGCCTTC
* *
36070469 -GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGCCTTC
1 GGGA-CTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTC
36070509 GGGACTTAGCCCGGATAT
1 GGGACTTAGCCCGGATAT
36070527 CATTCGAATA
Statistics
Matches: 146, Mismatches: 26, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
38 7 0.05
39 18 0.12
40 117 0.80
41 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTC
Found at i:36070463 original size:80 final size:79
Alignment explanation
Indices: 36070311--36070526 Score: 267
Period size: 80 Copynumber: 2.7 Consensus size: 79
36070301 AAGTATCTTT
* * * * * *
36070311 GGGATTTAGCCGGATATAACCACTCGCAC-AAGGCTTTCGGGTCTTAGCCCGGATATGGTCACTA
1 GGGACTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
*
36070375 GCATAAATGCCTTC
66 GCACAAATGCCTTC
*
36070389 GGGACTTAGCCCGGATATAATCGCTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG-CAAC
1 GGGACTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGTC-AC
*
36070453 TCGCACAAATGCCTTC
64 TAGCACAAATGCCTTC
* * *
36070469 -GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
1 GGGA-CTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
36070527 CATTCGAATA
Statistics
Matches: 120, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
78 8 0.07
79 21 0.17
80 91 0.76
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (79 bp):
GGGACTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
GCACAAATGCCTTC
Found at i:36078492 original size:40 final size:40
Alignment explanation
Indices: 36078418--36078628 Score: 257
Period size: 40 Copynumber: 5.3 Consensus size: 40
36078408 ATCTTGGGAT
** * *
36078418 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
36078456 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
36078496 TTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
36078536 TTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * *
36078576 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
36078616 TTAGCCCGGATAT
1 TTAGCCCGGATAT
36078629 CATTCGAATA
Statistics
Matches: 146, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
38 4 0.03
39 16 0.11
40 125 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:36081436 original size:206 final size:207
Alignment explanation
Indices: 36081075--36081627 Score: 815
Period size: 206 Copynumber: 2.7 Consensus size: 207
36081065 AAATTTGCTT
* * *
36081075 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGTTTCAGCGTAAGTAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * * * *
36081140 GCGAAAACGAAATCAGCTAT-ATCTTCAATTTGCTCCTTGTAAGCACAAGGACACCAAACCATCT
66 GTGAAAGCCAAATCAGCTATGATCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCT
* * * * * *
36081204 TGGATCTGCTTTAGTCTAATCATCTGAAGGATAGATCTGCTACGTGTCTGCCCTTCGTCGAATAT
131 TGGATCTGCTTTAGTATAAACATCTGAAGGACAGATCTACTACGTATCTGCCCTCCGTCGAATAT
36081269 GGAGACGCCAAA
196 GGAGACGCCAAA
* * * *
36081281 CTTCGATTTGTTCTCTGGCAATATAGAAATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * * *
36081346 GTGAAAGCTAAATTAGCTATGAT-TTCGATTTGTTCCTTGCAAACACAAGGATACCAAATCATCT
66 GTGAAAGCCAAATCAGCTATGATCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCT
* * *
36081410 TGGATCTGCTTTAGTATAAACATCTGAAGGCCAGATCTACTATGTATCTGCTCTCCGTCGAATAT
131 TGGATCTGCTTTAGTATAAACATCTGAAGGACAGATCTACTACGTATCTGCCCTCCGTCGAATAT
36081475 GGAGACGCCAAA
196 GGAGACGCCAAA
*
36081487 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
36081552 GTGAAAGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
66 GTGAAAGCCAAATCAGCTATGATCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCT
36081616 TGGATCTTGCTT
131 TGGATC-TGCTT
36081628 CAGCCAAATC
Statistics
Matches: 307, Mismatches: 37, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
205 1 0.00
206 299 0.97
207 7 0.02
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGATCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCT
TGGATCTGCTTTAGTATAAACATCTGAAGGACAGATCTACTACGTATCTGCCCTCCGTCGAATAT
GGAGACGCCAAA
Found at i:36082513 original size:7 final size:7
Alignment explanation
Indices: 36082501--36082611 Score: 75
Period size: 7 Copynumber: 14.9 Consensus size: 7
36082491 GCATCTCCAT
36082501 TTTTTTC
1 TTTTTTC
36082508 TTTTTTCC
1 TTTTTT-C
*
36082516 TCTTCTCTC
1 T-TT-TTTC
36082525 TTTTTT-
1 TTTTTTC
36082531 TCTTTTTC
1 T-TTTTTC
36082539 TTTTTTTC
1 -TTTTTTC
36082547 TTTTTTC
1 TTTTTTC
36082554 TTTTTTTTC
1 --TTTTTTC
36082563 TTTTTTC
1 TTTTTTC
*
36082570 TTTTTTT
1 TTTTTTC
*
36082577 TTGTTTTGA
1 TT-TTTT-C
36082586 TTTGTTT-
1 TTT-TTTC
*
36082593 TTTGTT-
1 TTTTTTC
36082599 TTTTTTC
1 TTTTTTC
36082606 TTTTTT
1 TTTTTT
36082612 GATTTTCGAA
Statistics
Matches: 86, Mismatches: 6, Indels: 24
0.74 0.05 0.21
Matches are distributed among these distances:
6 8 0.09
7 44 0.51
8 15 0.17
9 17 0.20
10 2 0.02
ACGTcount: A:0.01, C:0.13, G:0.04, T:0.83
Consensus pattern (7 bp):
TTTTTTC
Found at i:36082529 original size:1 final size:1
Alignment explanation
Indices: 36082525--36082611 Score: 66
Period size: 1 Copynumber: 87.0 Consensus size: 1
36082515 CTCTTCTCTC
* * * * * * * ** *
36082525 TTTTTTTCTTTTTCTTTTTTTCTTTTTTCTTTTTTTTCTTTTTTCTTTTTTTTTGTTTTGATTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
36082590 TTTTTTGTTTTTTTTCTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTT
36082612 GATTTTCGAA
Statistics
Matches: 63, Mismatches: 23, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 63 1.00
ACGTcount: A:0.01, C:0.08, G:0.05, T:0.86
Consensus pattern (1 bp):
T
Found at i:36082534 original size:15 final size:15
Alignment explanation
Indices: 36082501--36082611 Score: 104
Period size: 15 Copynumber: 7.4 Consensus size: 15
36082491 GCATCTCCAT
36082501 TTTTTTCTTTTTTCCTC
1 TTTTTTCTTTTTT--TC
* *
36082518 TTCTCTCTTTTTTTC
1 TTTTTTCTTTTTTTC
36082533 -TTTTTCTTTTTTTC
1 TTTTTTCTTTTTTTC
36082547 TTTTTTCTTTTTTTTC
1 TTTTTTC-TTTTTTTC
36082563 TTTTTTCTTTTTTT-
1 TTTTTTCTTTTTTTC
** *
36082577 TTGTTTTGATTTGTT-
1 TT-TTTTCTTTTTTTC
*
36082592 TTTTGT-TTTTTTTC
1 TTTTTTCTTTTTTTC
36082606 TTTTTT
1 TTTTTT
36082612 GATTTTCGAA
Statistics
Matches: 79, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
13 5 0.06
14 22 0.28
15 26 0.33
16 15 0.19
17 11 0.14
ACGTcount: A:0.01, C:0.13, G:0.04, T:0.83
Consensus pattern (15 bp):
TTTTTTCTTTTTTTC
Found at i:36082544 original size:16 final size:16
Alignment explanation
Indices: 36082502--36082611 Score: 84
Period size: 16 Copynumber: 6.9 Consensus size: 16
36082492 CATCTCCATT
**
36082502 TTTTTCTTTTTTCCTC
1 TTTTTCTTTTTTTTTC
* *
36082518 -TTCTCTCTTTTTTTC
1 TTTTTCTTTTTTTTTC
*
36082533 TTTTTCTTTTTTTCT-
1 TTTTTCTTTTTTTTTC
36082548 TTTTTC-TTTTTTTTC
1 TTTTTCTTTTTTTTTC
*
36082563 TTTTTTCTTTTTTTTTG
1 -TTTTTCTTTTTTTTTC
** *
36082580 TTTTGATTTGTTTTTTG
1 TTTTTCTTT-TTTTTTC
36082597 TTTTT-TTTCTTTTTT
1 TTTTTCTTT-TTTTTT
36082612 GATTTTCGAA
Statistics
Matches: 76, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
14 7 0.09
15 17 0.22
16 33 0.43
17 19 0.25
ACGTcount: A:0.01, C:0.13, G:0.04, T:0.83
Consensus pattern (16 bp):
TTTTTCTTTTTTTTTC
Found at i:36082576 original size:31 final size:32
Alignment explanation
Indices: 36082501--36082576 Score: 111
Period size: 31 Copynumber: 2.4 Consensus size: 32
36082491 GCATCTCCAT
*
36082501 TTTTTTCTTTTTTCCTCTTCTCTCTTTTTTTC
1 TTTTTTCTTTTTTTCTCTTCTCTCTTTTTTTC
* *
36082533 -TTTTTCTTTTTTTCTTTTTTCT-TTTTTTTC
1 TTTTTTCTTTTTTTCTCTTCTCTCTTTTTTTC
36082563 TTTTTTCTTTTTTT
1 TTTTTTCTTTTTTT
36082577 TTGTTTTGAT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
30 8 0.20
31 32 0.80
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (32 bp):
TTTTTTCTTTTTTTCTCTTCTCTCTTTTTTTC
Found at i:36083645 original size:22 final size:22
Alignment explanation
Indices: 36083617--36083661 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
36083607 ATTTCTTGGT
36083617 ATAGTTAATACAGTCCCCTTCC
1 ATAGTTAATACAGTCCCCTTCC
*
36083639 ATAGTTAATATAGTCCCCTTCC
1 ATAGTTAATACAGTCCCCTTCC
36083661 A
1 A
36083662 CAGTCTCCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (22 bp):
ATAGTTAATACAGTCCCCTTCC
Found at i:36087603 original size:40 final size:39
Alignment explanation
Indices: 36087453--36087605 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
36087443 GAATGTTCGA
* *
36087453 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
36087492 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
36087531 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
36087570 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
36087606 GGTTACCATA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:36087621 original size:40 final size:39
Alignment explanation
Indices: 36087454--36087636 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
36087444 AATGTTCGAG
* * *
36087454 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
36087493 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
36087532 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
36087571 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
36087611 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
36087637 GTTTGAACGA
Statistics
Matches: 128, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.68
40 41 0.32
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:36087672 original size:79 final size:79
Alignment explanation
Indices: 36087460--36087674 Score: 177
Period size: 78 Copynumber: 2.7 Consensus size: 79
36087450 CGAGTGATAT
** * * * * * *
36087460 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCT-AA-GCCCGAAGGCAATTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCC-GGATAAACTCCCGAAGGCAATTG
** *
36087523 TGCGAGTTATGATAT
65 TGCGAGTTACCATAA
** * * * * *
36087538 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
*
36087603 GCGGGTTACCATAA
66 GCGAGTTACCATAA
* **
36087617 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCCGGATAAACT-CCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGATAAACTCCCGAAGG
36087675 TATGTGATTC
Statistics
Matches: 114, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
77 3 0.03
78 40 0.35
79 40 0.35
80 30 0.26
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.22
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
GCGAGTTACCATAA
Found at i:36095548 original size:40 final size:39
Alignment explanation
Indices: 36095398--36095550 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
36095388 AAATGTTCGA
* * *
36095398 GTGATATCCGGGCTAAGCCCAAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
36095437 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
36095476 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
36095515 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
36095551 GGTTACCATA
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 87 0.84
40 17 0.16
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:36095566 original size:40 final size:39
Alignment explanation
Indices: 36095399--36095581 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
36095389 AATGTTCGAG
* * * *
36095399 TGATATCCGGGCTAAGCCCAAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
36095438 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
36095477 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
36095516 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
36095556 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
36095582 GTTTGAACGA
Statistics
Matches: 127, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 86 0.68
40 41 0.32
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:36104735 original size:21 final size:22
Alignment explanation
Indices: 36104702--36104745 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
36104692 ATAAAATAAT
*
36104702 AAACATATTTAA-TAATACATGA
1 AAACATATGTAATTAATA-ATGA
36104724 AAACATA-GTAATTAATAATGA
1 AAACATATGTAATTAATAATGA
36104745 A
1 A
36104746 TTTTGAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (22 bp):
AAACATATGTAATTAATAATGA
Found at i:36104932 original size:16 final size:15
Alignment explanation
Indices: 36104860--36104934 Score: 68
Period size: 14 Copynumber: 4.9 Consensus size: 15
36104850 AATATCAATT
36104860 TAATATGAA-AATAA
1 TAATATGAATAATAA
36104874 TAATATGAATAATAA
1 TAATATGAATAATAA
*
36104889 T-ATACCTGAAAATATATA
1 TAATA--TGAATA-ATA-A
36104907 TAATA-G-ATAATAA
1 TAATATGAATAATAA
36104920 TAATATGAAATAATA
1 TAATATG-AATAATA
36104935 TATTGTTAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 16
0.74 0.03 0.24
Matches are distributed among these distances:
13 6 0.12
14 16 0.32
15 8 0.16
16 12 0.24
17 3 0.06
18 2 0.04
19 3 0.06
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.32
Consensus pattern (15 bp):
TAATATGAATAATAA
Found at i:36104964 original size:8 final size:8
Alignment explanation
Indices: 36104951--36105149 Score: 87
Period size: 8 Copynumber: 25.1 Consensus size: 8
36104941 TAAAATGTAA
36104951 AATAATAT
1 AATAATAT
36104959 AATAATAT
1 AATAATAT
36104967 AATAATAT
1 AATAATAT
36104975 -ATAA-AT
1 AATAATAT
* *
36104981 -ATTATGT
1 AATAATAT
* *
36104988 GATAAAACT
1 AATAATA-T
36104997 -ATAATAT
1 AATAATAT
36105004 AATAA-AT
1 AATAATAT
*
36105011 AATAA-GT
1 AATAATAT
*
36105018 AATGATAT
1 AATAATAT
** *
36105026 -ATGTTAA
1 AATAATAT
36105033 AAT-ATAT
1 AATAATAT
*
36105040 ATTAATAT
1 AATAATAT
* *
36105048 GATAATAG
1 AATAATAT
*
36105056 AAAAATAT
1 AATAATAT
36105064 GAAGTAATAT
1 -AA-TAATAT
36105074 AAT-ATAAT
1 AATAAT-AT
36105082 AA-AATAT
1 AATAATAT
36105089 AAGTAA-AT
1 AA-TAATAT
36105097 AATAATAT
1 AATAATAT
*
36105105 AAAATATAT
1 AATA-ATAT
36105114 AATACATAT
1 AATA-ATAT
* *
36105123 ATATATTAA
1 A-ATAATAT
*
36105132 AATAAAAT
1 AATAATAT
36105140 AATATATAT
1 AATA-ATAT
36105149 A
1 A
36105150 CAATTTAAAA
Statistics
Matches: 144, Mismatches: 30, Indels: 33
0.70 0.14 0.16
Matches are distributed among these distances:
6 5 0.03
7 36 0.25
8 69 0.48
9 26 0.18
10 8 0.06
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (8 bp):
AATAATAT
Found at i:36104978 original size:10 final size:10
Alignment explanation
Indices: 36104870--36105147 Score: 62
Period size: 10 Copynumber: 26.3 Consensus size: 10
36104860 TAATATGAAA
36104870 ATAATAATAT
1 ATAATAATAT
36104880 GAATAATAATAT
1 --ATAATAATAT
36104892 ACCTGAA-AATAT
1 A--T-AATAATAT
*
36104904 AT-ATAATAG
1 ATAATAATAT
36104913 ATAATAATAAT
1 ATAATAAT-AT
36104924 ATGAAATAATAT
1 AT--AATAATAT
** *
36104936 ATTGTTAAAAT
1 A-TAATAATAT
*
36104947 GTAA-AATA-
1 ATAATAATAT
36104955 AT-ATAATAAT
1 ATAATAAT-AT
36104965 ATAATAATAT
1 ATAATAATAT
*
36104975 ATAAATATTAT
1 AT-AATAATAT
* * *
36104986 GTGATAAAACT
1 ATAATAATA-T
36104997 ATAAT-ATA-
1 ATAATAATAT
36105005 ATAAATAATA-
1 AT-AATAATAT
36105015 AGTAATGATATAT
1 A-TAAT-A-ATAT
*
36105028 GTTAA-AATAT
1 -ATAATAATAT
*
36105038 ATATTAATAT
1 ATAATAATAT
* *
36105048 GATAATAGAAAA
1 -ATAATA-ATAT
36105060 AT-ATGAAGTA-
1 ATAAT-AA-TAT
36105070 AT-ATAATAT
1 ATAATAATAT
36105079 AATAA-AATAT
1 -ATAATAATAT
36105089 AAGTAAATAATAAT
1 -A-T-AATAAT-AT
36105103 ATAA-AATAT
1 ATAATAATAT
36105112 ATAATACATAT
1 ATAATA-ATAT
*
36105123 ATATATTAAAAT
1 ATA-A-TAATAT
*
36105135 AAAATAATAT
1 ATAATAATAT
36105145 ATA
1 ATA
36105148 TACAATTTAA
Statistics
Matches: 199, Mismatches: 29, Indels: 78
0.65 0.09 0.25
Matches are distributed among these distances:
7 1 0.01
8 9 0.05
9 23 0.12
10 63 0.32
11 49 0.25
12 34 0.17
13 18 0.09
14 2 0.01
ACGTcount: A:0.58, C:0.01, G:0.06, T:0.35
Consensus pattern (10 bp):
ATAATAATAT
Found at i:36105069 original size:51 final size:47
Alignment explanation
Indices: 36104997--36105135 Score: 145
Period size: 51 Copynumber: 2.8 Consensus size: 47
36104987 TGATAAAACT
* * *
36104997 ATAATATAATAAATAATAAGTAATGATATATGTTAAAATATATATTAATATG
1 ATAATATAA-AAAT-ATAAGTAAT-ATATATATTAAAATATA-AGTAA-ATA
* *
36105049 ATAATAGAAAAATATGAAGTAATATAATATAATAAAATATAAGTAAATA
1 ATAATATAAAAATAT-AAGTAATAT-ATATATTAAAATATAAGTAAATA
36105098 ATAATATAAAATATATAA-TACATATATATATTAAAATA
1 ATAATATAAAA-ATATAAGTA-ATATATATATTAAAATA
36105136 AAATAATATA
Statistics
Matches: 76, Mismatches: 7, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
48 14 0.18
49 18 0.24
50 12 0.16
51 24 0.32
52 8 0.11
ACGTcount: A:0.59, C:0.01, G:0.06, T:0.35
Consensus pattern (47 bp):
ATAATATAAAAATATAAGTAATATATATATTAAAATATAAGTAAATA
Found at i:36105078 original size:5 final size:5
Alignment explanation
Indices: 36105068--36105149 Score: 55
Period size: 5 Copynumber: 16.4 Consensus size: 5
36105058 AAATATGAAG
* *
36105068 TAATA TAATA TAATA AAATA TAAGTA -AATAA TAATA TAAAA T-ATA TAATA
1 TAATA TAATA TAATA TAATA TAA-TA TAAT-A TAATA TAATA TAATA TAATA
* * *
36105118 -CATA TATATA TTAAAA TAAAA TAATA T-ATA TA
1 TAATA TA-ATA -TAATA TAATA TAATA TAATA TA
36105150 CAATTTAAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 16
0.72 0.09 0.19
Matches are distributed among these distances:
4 11 0.18
5 38 0.62
6 10 0.16
7 2 0.03
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (5 bp):
TAATA
Found at i:36105148 original size:26 final size:26
Alignment explanation
Indices: 36105070--36105163 Score: 76
Period size: 26 Copynumber: 3.8 Consensus size: 26
36105060 ATATGAAGTA
* *
36105070 ATATA-ATATAATAAAATATAAGTAA-
1 ATATATATATATTAAAATA-AAATAAT
*
36105095 ATA-ATA-ATA-TAAAAT-ATATAAT
1 ATATATATATATTAAAATAAAATAAT
*
36105117 ACATATATATATTAAAATAAAATAAT
1 ATATATATATATTAAAATAAAATAAT
*
36105143 ATATATACA-ATTTAAAATAAA
1 ATATATATATA-TTAAAATAAA
36105164 TAAGTTATAA
Statistics
Matches: 56, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
21 4 0.07
22 2 0.04
23 9 0.16
24 7 0.12
25 11 0.20
26 23 0.41
ACGTcount: A:0.63, C:0.02, G:0.01, T:0.34
Consensus pattern (26 bp):
ATATATATATATTAAAATAAAATAAT
Found at i:36105179 original size:25 final size:27
Alignment explanation
Indices: 36105128--36105185 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
36105118 CATATATATA
*
36105128 TTAAAATAAAATAATATATATACAA-T
1 TTAAAATAAAATAATATATAAACAATT
*
36105154 TTAAAAT-AAATAAGT-TATAAATAATT
1 TTAAAATAAAATAA-TATATAAACAATT
36105180 TTAAAA
1 TTAAAA
36105186 GGGATAAAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 13 0.46
26 15 0.54
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (27 bp):
TTAAAATAAAATAATATATAAACAATT
Found at i:36116448 original size:54 final size:54
Alignment explanation
Indices: 36116252--36116454 Score: 232
Period size: 54 Copynumber: 3.8 Consensus size: 54
36116242 AACTTACCAT
* * * *
36116252 TGCCATGTCTTGACATGGTCTTACGTGATATCCTTGCCTTA-TGAACTCA-CTAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTACAGAACTCATC-AA
* ** * **
36116305 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATGGAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCC-TTACCTTACAGAACTCATCAA
* * *
36116359 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTACAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTACAGAACTCATCAA
* *
36116413 TGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTAC
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTAC
36116455 CAAATGCCAT
Statistics
Matches: 127, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.02
53 33 0.26
54 89 0.70
55 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTACAGAACTCATCAA
Found at i:36116763 original size:44 final size:44
Alignment explanation
Indices: 36116638--36116750 Score: 163
Period size: 44 Copynumber: 2.6 Consensus size: 44
36116628 TATCCTAAAC
* * * *
36116638 CGTCAATTCCTCCTTAAATGCCATGTTATGAACATTGACTTTTT
1 CGTCAATTCATCCTTAATTGCCATGTTATGAACATGGAATTTTT
** *
36116682 CGTCAATTTTTCCTTAATTGCCATGTTATGAAGATGGAATTTTT
1 CGTCAATTCATCCTTAATTGCCATGTTATGAACATGGAATTTTT
36116726 CGTCAATTCATCCTTAATTGCCATG
1 CGTCAATTCATCCTTAATTGCCATG
36116751 GTACAACCAT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 61 1.00
ACGTcount: A:0.25, C:0.20, G:0.13, T:0.42
Consensus pattern (44 bp):
CGTCAATTCATCCTTAATTGCCATGTTATGAACATGGAATTTTT
Found at i:36122628 original size:29 final size:29
Alignment explanation
Indices: 36122595--36122754 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
36122585 GTGACGAGAT
36122595 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
36122624 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
36122653 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
36122682 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
36122711 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
36122740 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
36122755 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:36130662 original size:29 final size:29
Alignment explanation
Indices: 36130629--36130759 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
36130619 GTGACGAGAT
36130629 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
36130658 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
36130687 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
36130716 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
36130745 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
36130760 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:36136319 original size:29 final size:29
Alignment explanation
Indices: 36136165--36136318 Score: 211
Period size: 29 Copynumber: 5.3 Consensus size: 29
36136155 AAGTCTACAT
* *
36136165 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
36136193 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
**
36136222 ACATTTGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
36136251 ACATTCATATGGCCGATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* **
36136280 ACATTCCTATTTCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
36136309 ACTTTCATAT
1 ACATTCATAT
36136319 TCATGCTTTC
Statistics
Matches: 110, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 21 0.19
29 89 0.81
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:36140752 original size:29 final size:29
Alignment explanation
Indices: 36140691--36140780 Score: 128
Period size: 29 Copynumber: 3.1 Consensus size: 29
36140681 ACATACATGT
* *
36140691 ATATGGCCCACTAGGCCC-AATCTCATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
* *
36140719 ATATGGCCGATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
36140748 GTATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
36140777 ATAT
1 ATAT
36140781 TCATGCTTTC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 16 0.30
29 37 0.70
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:36142510 original size:43 final size:43
Alignment explanation
Indices: 36142462--36142598 Score: 116
Period size: 43 Copynumber: 3.2 Consensus size: 43
36142452 CTGGATATGA
* * *
36142462 TCTTACATGTAATCAAATATCGATGCCTCTGTCCCAGACAGGG
1 TCTTACACGTAATCAAATATCGATGCCTATGTCCCAGACACGG
* * * * * *
36142505 TCTTACACGAAATTAGATA-CGATGCCGATGTCCCAAACATGG
1 TCTTACACGTAATCAAATATCGATGCCTATGTCCCAGACACGG
* ** * * *
36142547 TCTTATACGTAAATCTTA-ATCGAGGCCTGTGTCCCAGACACAG
1 TCTTACACGT-AATCAAATATCGATGCCTATGTCCCAGACACGG
36142590 TCTTACACG
1 TCTTACACG
36142599 ATGTCTCAGA
Statistics
Matches: 72, Mismatches: 20, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
42 28 0.39
43 44 0.61
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (43 bp):
TCTTACACGTAATCAAATATCGATGCCTATGTCCCAGACACGG
Found at i:36142537 original size:42 final size:40
Alignment explanation
Indices: 36142480--36142599 Score: 107
Period size: 42 Copynumber: 2.9 Consensus size: 40
36142470 GTAATCAAAT
* *
36142480 ATCGATGCCTCTGTCCCAGACAGGGTCTTACACGAAA-TTA
1 ATCGATGCC-GTGTCCCAGACACGGTCTTACACGAAACTTA
* * *
36142520 GATACGATGCCGATGTCCCAAACATGGTCTTATACGTAAATCTTA
1 -AT-CGATGCCG-TGTCCCAGACACGGTCTTACACG-AAA-CTTA
* *
36142565 ATCGAGGCCTGTGTCCCAGACACAGTCTTACACGA
1 ATCGATGCC-GTGTCCCAGACACGGTCTTACACGA
36142600 TGTCTCAGAC
Statistics
Matches: 64, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
41 2 0.03
42 28 0.44
43 28 0.44
44 3 0.05
45 3 0.05
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
ATCGATGCCGTGTCCCAGACACGGTCTTACACGAAACTTA
Found at i:36150989 original size:48 final size:47
Alignment explanation
Indices: 36150937--36151070 Score: 169
Period size: 48 Copynumber: 2.8 Consensus size: 47
36150927 AACAGTGTCG
* * * * *
36150937 ATGCCATGTCCTAGACATGGTCTTATACGGGACCTCATATTGATGCCA
1 ATGCCATATCCCAGATATGGTCTTA-ACGGGATCTCATACTGATGCCA
* *
36150985 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATACTGATGCCG
1 ATGCCATATCCCAGATATGGTCTTA-ACGGGATCTCATACTGATGCCA
*
36151033 ATGTCATATCCCAGATATGGTCTTCAACGGGATCTCAT
1 ATGCCATATCCCAGATATGGTCTT-AACGGGATCTCAT
36151071 TTGGATGTCG
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
48 74 0.99
49 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (47 bp):
ATGCCATATCCCAGATATGGTCTTAACGGGATCTCATACTGATGCCA
Found at i:36151035 original size:96 final size:95
Alignment explanation
Indices: 36150904--36151122 Score: 219
Period size: 96 Copynumber: 2.3 Consensus size: 95
36150894 ACGGGCCAAC
* * * * *
36150904 TATGGTCTTACAT-GAAGTCTCATAACAGTGTCGATGCCATGTCCTAGACATGGTCTT-ATACGG
1 TATGGTCTTACATGGGA-TCTCAT-ACTGTGCCGATGCCATATCCCAGACATGGTCTTCA-ACGG
* *
36150967 GACCTCATATT-GATGCCAATGCCATATCCCAGA
63 GACCTCAT-TTGGATGCCAATACCATATCCAAGA
* *
36151000 TATGGTCTTACATGGGATCTCATACTGATGCCGATGTCATATCCCAGATATGGTCTTCAACGGGA
1 TATGGTCTTACATGGGATCTCATACTG-TGCCGATGCCATATCCCAGACATGGTCTTCAACGGGA
* * **
36151065 TCTCATTTGGATGTCGGTACCATATCCAAGA
65 CCTCATTTGGATGCCAATACCATATCCAAGA
* * *
36151096 TATGGTTTTATATGGGTTCTCAATACT
1 TATGGTCTTACATGGGATCTC-ATACT
36151123 CACATGTCGT
Statistics
Matches: 102, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
95 5 0.05
96 89 0.87
97 8 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (95 bp):
TATGGTCTTACATGGGATCTCATACTGTGCCGATGCCATATCCCAGACATGGTCTTCAACGGGAC
CTCATTTGGATGCCAATACCATATCCAAGA
Found at i:36151089 original size:48 final size:48
Alignment explanation
Indices: 36150935--36151101 Score: 158
Period size: 48 Copynumber: 3.5 Consensus size: 48
36150925 ATAACAGTGT
* * * * * * *
36150935 CGATGCCATGTCCTAGACATGGTCTTATACGGGACCTCATATTGATGC
1 CGATACCATATCCCAGATATGGTCTTACACGGGATCTCATACTGATGC
* * *
36150983 CAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATACTGATGC
1 CGATACCATATCCCAGATATGGTCTTACACGGGATCTCATACTGATGC
** * *
36151031 CGATGTCATATCCCAGATATGGTCTT-CAACGGGATCTCAT-TTGGATGT
1 CGATACCATATCCCAGATATGGTCTTAC-ACGGGATCTCATACT-GATGC
* *
36151079 CGGTACCATATCCAAGATATGGT
1 CGATACCATATCCCAGATATGGT
36151102 TTTATATGGG
Statistics
Matches: 100, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
47 2 0.02
48 98 0.98
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (48 bp):
CGATACCATATCCCAGATATGGTCTTACACGGGATCTCATACTGATGC
Found at i:36151117 original size:48 final size:47
Alignment explanation
Indices: 36150965--36151122 Score: 138
Period size: 48 Copynumber: 3.3 Consensus size: 47
36150955 GGTCTTATAC
* * * * *
36150965 GGGACCTCATATTGATGCCAATGCCATATCCCAGATATGGTCTTACAT
1 GGGATCTCATACTGATGCCGATACCATATCCCAGATATGGTTTTA-AT
** * *
36151013 GGGATCTCATACTGATGCCGATGTCATATCCCAGATATGGTCTTCAAC
1 GGGATCTCATACTGATGCCGATACCATATCCCAGATATGGT-TTTAAT
* * * *
36151061 GGGATCTCAT-TTGGATGTCGGTACCATATCCAAGATATGGTTTTATAT
1 GGGATCTCATACT-GATGCCGATACCATATCCCAGATATGGTTTTA-AT
*
36151109 GGGTTCTCAATACT
1 GGGATCTC-ATACT
36151123 CACATGTCGT
Statistics
Matches: 88, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
47 4 0.05
48 79 0.90
49 4 0.05
50 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (47 bp):
GGGATCTCATACTGATGCCGATACCATATCCCAGATATGGTTTTAAT
Found at i:36152962 original size:28 final size:27
Alignment explanation
Indices: 36152899--36152968 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
36152889 ATAGTGAGTC
*
36152899 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
36152926 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
36152954 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36152969 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:36161787 original size:39 final size:38
Alignment explanation
Indices: 36161729--36161910 Score: 154
Period size: 40 Copynumber: 4.6 Consensus size: 38
36161719 CCGCACCAAG
* * * *
36161729 GCCTACGGGACTTAACCCGGATATCACGATTTG-ACAAAT
1 GCCTTCGGGTCTTAGCCCGGATAT-AC-ACTTGCACAAAT
* *
36161768 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATAT-AC-ACTTGCACAAAT
* *
36161808 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATA-C-ACTTGCACAAAT
* *
36161848 GCCTTCGGGTCTTAACCCGGATATA-A-TTTCAGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATACACTTGCA-CA-AA-T
* *
36161887 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
36161911 CATTCAATTT
Statistics
Matches: 118, Mismatches: 20, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
36 3 0.03
37 3 0.03
38 1 0.01
39 49 0.42
40 62 0.53
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.28
Consensus pattern (38 bp):
GCCTTCGGGTCTTAGCCCGGATATACACTTGCACAAAT
Found at i:36161811 original size:40 final size:39
Alignment explanation
Indices: 36161765--36161910 Score: 159
Period size: 40 Copynumber: 3.7 Consensus size: 39
36161755 CGATTTGACA
* *
36161765 AATGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCAC
1 AATGCCTTCGGGTCTTAGCCCGGATATAACAACTAGCAC
* *
36161804 GAATGCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCAC
1 -AATGCCTTCGGGTCTTAGCCCGGATATAACAACTAGCAC
* *** *
36161844 AATTGCCTTCGGGTCTTAACCCGGATATAATTTC-AGCAT
1 AA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTAGCAC
* *
36161883 AATTGTCTTCGGGGCTTAGCCCGGATAT
1 AA-TGCCTTCGGGTCTTAGCCCGGATAT
36161911 CATTCAATTT
Statistics
Matches: 93, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 31 0.33
40 62 0.67
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (39 bp):
AATGCCTTCGGGTCTTAGCCCGGATATAACAACTAGCAC
Found at i:36164155 original size:28 final size:27
Alignment explanation
Indices: 36164092--36164161 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
36164082 ATAGTGAGTC
*
36164092 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
36164119 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
36164147 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36164162 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:36166511 original size:13 final size:13
Alignment explanation
Indices: 36166493--36166518 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36166483 GCCCAAACGT
36166493 TAAAATTTTCAAA
1 TAAAATTTTCAAA
36166506 TAAAATTTTCAAA
1 TAAAATTTTCAAA
36166519 AAATCATTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAAATTTTCAAA
Found at i:36171910 original size:95 final size:96
Alignment explanation
Indices: 36171794--36172021 Score: 237
Period size: 96 Copynumber: 2.4 Consensus size: 96
36171784 TCTCACATTG
* * * * *
36171794 ATGCCAATAGCCCAGCTATGGTCTTACACGA-AGTCTCATAAGGGTGCTGATGCCATGT-CCTAA
1 ATGCC-ATATCCCAGCTATGGTCTTACACGAGA-TCTCATAAGGATGCCGATGCCATATCCCAAA
* *
36171857 CATGGTCTTATACGGGACCTCATATCGATGCCA
64 CATGGTCTTACACAGGACCTCATATCGATGCCA
* * ** * *
36171890 ATGCCATATCCCAGCTATGGTCTTACATGGGATCTCATACTGATGCCGATGTCATATCCCAAATA
1 ATGCCATATCCCAGCTATGGTCTTACACGAGATCTCATAAGGATGCCGATGCCATATCCCAAACA
* * * *
36171955 TGGTCTTACACAGGATCTCATTTCGATGTCG
66 TGGTCTTACACAGGACCTCATATCGATGCCA
* * *
36171986 ATGCTATATCCCAGATATGGTCTTATACG-GATCTCA
1 ATGCCATATCCCAGCTATGGTCTTACACGAGATCTCA
36172022 ACACTCACAT
Statistics
Matches: 109, Mismatches: 21, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
95 48 0.44
96 61 0.56
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (96 bp):
ATGCCATATCCCAGCTATGGTCTTACACGAGATCTCATAAGGATGCCGATGCCATATCCCAAACA
TGGTCTTACACAGGACCTCATATCGATGCCA
Found at i:36171927 original size:48 final size:48
Alignment explanation
Indices: 36171793--36172021 Score: 205
Period size: 48 Copynumber: 4.8 Consensus size: 48
36171783 ATCTCACATT
* * * ** * *
36171793 GATGCCAATAGCCCAGCTATGGTCTTACAC-GAAGTCTCATAAGGGTGCT
1 GATGCC-ATATCCCAGATATGGTCTTACACGGGA-TCTCATATCGATGCC
* * * * *
36171842 GATGCCATGTCCTA-ACATGGTCTTATACGGGACCTCATATCGATGCC
1 GATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGATGCC
* * *
36171889 AATGCCATATCCCAGCTATGGTCTTACATGGGATCTCATA-CTGATGCC
1 GATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATC-GATGCC
* * * * *
36171937 GATGTCATATCCCAAATATGGTCTTACACAGGATCTCATTTCGATGTC
1 GATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGATGCC
* *
36171985 GATGCTATATCCCAGATATGGTCTTATAC-GGATCTCA
1 GATGCCATATCCCAGATATGGTCTTACACGGGATCTCA
36172022 ACACTCACAT
Statistics
Matches: 144, Mismatches: 32, Indels: 10
0.77 0.17 0.05
Matches are distributed among these distances:
47 41 0.28
48 96 0.67
49 7 0.05
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (48 bp):
GATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGATGCC
Found at i:36177348 original size:27 final size:27
Alignment explanation
Indices: 36177310--36177396 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 27
36177300 TGGATAAGTT
* *
36177310 GTAGAATTACCGAAATACCTTTGTAGG
1 GTAGAAATACCGAAATACCCTTGTAGG
* *
36177337 GTAGAAATACCGAAATACCCCTATAGG
1 GTAGAAATACCGAAATACCCTTGTAGG
* *
36177364 GTAGAATTACCGAGATACCCTTGT-GG
1 GTAGAAATACCGAAATACCCTTGTAGG
36177390 GTA-AAAT
1 GTAGAAAT
36177397 TACCATTTTG
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
25 3 0.06
26 5 0.10
27 43 0.84
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (27 bp):
GTAGAAATACCGAAATACCCTTGTAGG
Found at i:36178942 original size:20 final size:20
Alignment explanation
Indices: 36178917--36178957 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
36178907 ACATAAACTC
36178917 TAATTCAATTCAGTAGACTT
1 TAATTCAATTCAGTAGACTT
**
36178937 TAATTCAATTTTGTAGACTT
1 TAATTCAATTCAGTAGACTT
36178957 T
1 T
36178958 CAAATCTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.46
Consensus pattern (20 bp):
TAATTCAATTCAGTAGACTT
Found at i:36189147 original size:40 final size:41
Alignment explanation
Indices: 36189092--36189185 Score: 140
Period size: 40 Copynumber: 2.3 Consensus size: 41
36189082 TGACTATGTT
36189092 TGGCACTAAGTGTGCG-GTTCGAAATAGCTTTGGCTATA-AA
1 TGGCACTAAGTGTGCGAGTT-GAAATAGCTTTGGCTATATAA
* *
36189132 TGGCACTAAGTGTGCGAGTTGGAATAGCTTTGGCTATATGA
1 TGGCACTAAGTGTGCGAGTTGAAATAGCTTTGGCTATATAA
36189173 -GGCACTAAGTGTG
1 TGGCACTAAGTGTG
36189186 TAATACCGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
40 46 0.92
41 4 0.08
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.30
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGAGTTGAAATAGCTTTGGCTATATAA
Found at i:36193980 original size:15 final size:15
Alignment explanation
Indices: 36193952--36193985 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
36193942 TGGACCCACT
36193952 ACATAATAAAAATTA
1 ACATAATAAAAATTA
* *
36193967 ACATATTAATAATTA
1 ACATAATAAAAATTA
36193982 ACAT
1 ACAT
36193986 GAAAATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (15 bp):
ACATAATAAAAATTA
Found at i:36207020 original size:28 final size:28
Alignment explanation
Indices: 36206951--36207051 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
36206941 GACAAGATTG
* * * *
36206951 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
36206981 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
36207009 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
36207038 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
36207052 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:36207045 original size:29 final size:28
Alignment explanation
Indices: 36206980--36207051 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
36206970 AAAATTGTAC
*
36206980 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
36207008 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
36207037 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
36207052 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:36215937 original size:31 final size:29
Alignment explanation
Indices: 36215851--36215982 Score: 147
Period size: 29 Copynumber: 4.6 Consensus size: 29
36215841 GTGACGAGAT
36215851 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
36215880 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** * *
36215909 TGGCACTAAAAGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
36215938 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
36215967 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
36215983 GGCTTAAATT
Statistics
Matches: 85, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 85 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:36217571 original size:28 final size:28
Alignment explanation
Indices: 36217502--36217602 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
36217492 GACAAGATTG
* * * *
36217502 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
36217532 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
36217560 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
36217589 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
36217603 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:36217596 original size:29 final size:28
Alignment explanation
Indices: 36217531--36217602 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
36217521 AAAATTGTAC
*
36217531 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
36217559 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
36217588 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
36217603 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:36219024 original size:2 final size:2
Alignment explanation
Indices: 36219017--36219046 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
36219007 CACGAACAGT
36219017 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
36219047 CATGAATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:36221368 original size:13 final size:13
Alignment explanation
Indices: 36221350--36221377 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
36221340 ACATATTATA
36221350 AATATTTTGTGTT
1 AATATTTTGTGTT
36221363 AATATTTTGTGTT
1 AATATTTTGTGTT
36221376 AA
1 AA
36221378 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:36222844 original size:40 final size:40
Alignment explanation
Indices: 36222796--36222985 Score: 301
Period size: 40 Copynumber: 4.8 Consensus size: 40
36222786 GGACTAAGAT
*
36222796 CCGAAGGCATTTGTGCTAGTGACTATATTCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
36222836 CCGAAGGCATTTGTGCTAGTTACTATATTCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
36222876 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* **
36222916 CCAAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
36222956 CCGAAGGCATTTGTGCGAGTTG-CTATATCC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCC
36222986 AGCTAAATCC
Statistics
Matches: 140, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 138 0.99
41 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:36225042 original size:43 final size:43
Alignment explanation
Indices: 36224873--36225043 Score: 143
Period size: 43 Copynumber: 4.0 Consensus size: 43
36224863 ATAGGTTTTA
* * *
36224873 GATATGTGATTTCATGTAAGACCACATCTGGGACGTTGGCATC
1 GATATTTGATTACATGTAAGACCACATCTAGGACGTTGGCATC
* * * * ** * *
36224916 GAT-TTGAGATTTACGTATAAAACCATGTCTAGGACATCGGCATC
1 GATATT-TGA-TTACATGTAAGACCACATCTAGGACGTTGGCATC
* *
36224960 G-TATTTGATTTCATGTAAGACC-CTATCTAGGATAG-TGGCATC
1 GATATTTGATTACATGTAAGACCAC-ATCTAGGA-CGTTGGCATC
* *
36225002 GATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 GATATTTGATTACATGTAAGACCACATCTAGGACGTTGGCAT
36225044 TGTACGATCT
Statistics
Matches: 95, Mismatches: 25, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
42 26 0.27
43 40 0.42
44 29 0.31
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (43 bp):
GATATTTGATTACATGTAAGACCACATCTAGGACGTTGGCATC
Found at i:36228008 original size:39 final size:39
Alignment explanation
Indices: 36227954--36228116 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
36227944 TGTGAATGAA
36227954 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
36227993 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
36228032 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
36228071 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
36228111 TGTGCG
1 TGTGCG
36228117 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:36228132 original size:40 final size:39
Alignment explanation
Indices: 36227954--36228146 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
36227944 TGTGAATGAA
* *
36227954 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
36227993 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
36228032 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
36228071 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
36228111 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
36228147 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:36234530 original size:27 final size:28
Alignment explanation
Indices: 36234500--36234569 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
36234490 ATAATAAGTC
*
36234500 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
36234527 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
36234555 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36234570 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:36242605 original size:27 final size:28
Alignment explanation
Indices: 36242575--36242644 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
36242565 ATAATAAGTC
*
36242575 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
36242602 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
36242630 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36242645 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:36247881 original size:29 final size:28
Alignment explanation
Indices: 36247794--36247911 Score: 105
Period size: 29 Copynumber: 4.1 Consensus size: 28
36247784 ACATACATGC
* *
36247794 ATATGGCCCACTT-GGCCC-AATCTCATTT
1 ATATGGCCCA-TTAGGCCCAAATCAC-CTT
* * * * *
36247822 ATATGACCCATCAGGCCCAATTGACATTT
1 ATATGGCCCATTAGGCCCAAATCAC-CTT
*
36247851 ATGTGGCCCATTAGGCCCAAATCACCATT
1 ATATGGCCCATTAGGCCCAAATCACC-TT
*
36247880 ATATGGCCCGTTAGGCCCAAATCACCTT
1 ATATGGCCCATTAGGCCCAAATCACCTT
36247908 ATAT
1 ATAT
36247912 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
27 1 0.01
28 20 0.27
29 53 0.72
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAAATCACCTT
Found at i:36248216 original size:22 final size:22
Alignment explanation
Indices: 36248190--36248234 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
36248180 TGTATGTACA
* *
36248190 CACCTGGTAATAAAGTGTGCTG
1 CACCTAGTAATAAAGCGTGCTG
36248212 CACCTAGTAATAAAGCGTGCTG
1 CACCTAGTAATAAAGCGTGCTG
36248234 C
1 C
36248235 GATTTCCTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (22 bp):
CACCTAGTAATAAAGCGTGCTG
Found at i:36258997 original size:22 final size:21
Alignment explanation
Indices: 36258937--36258998 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
36258927 CACTAGACAT
*
36258937 AGGGGCACACGCCCGTGTAGA
1 AGGGGCACACGCCCGTGTGGA
**
36258958 AGGGGCACATTCCCGTGTGGA
1 AGGGGCACACGCCCGTGTGGA
36258979 AGGGGCAACACGCCCGTGTG
1 AGGGGC-ACACGCCCGTGTG
36258999 ACCAATTCGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
21 24 0.69
22 11 0.31
ACGTcount: A:0.21, C:0.27, G:0.39, T:0.13
Consensus pattern (21 bp):
AGGGGCACACGCCCGTGTGGA
Found at i:36260296 original size:99 final size:96
Alignment explanation
Indices: 36260121--36260302 Score: 240
Period size: 99 Copynumber: 1.9 Consensus size: 96
36260111 AGGGTAGAAT
* *
36260121 GCCAACACCATGTCCCAAACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAG
1 GCCAACACCACGTCCCAAACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAG
*
36260186 ACATGGTCTTACATTGACTATCATCATCGAG
66 ACATGGTCTTACACTGACTATCATCATCGAG
* * * * *
36260217 GCCAACGCCACGTCCCAGACATGGTCTTACTCTAGCTGTGACATATCT-ATGTCGCTGCCATGTC
1 GCCAACACCACGTCCCAAACATGGTCTTACACTAGC--T--CATATCTCAAGTCGATGCCATGTC
*
36260281 CCAGACTTGGTCTTACACTGAC
62 CCAGACATGGTCTTACACTGAC
36260303 ACATCTCGTA
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
96 31 0.42
98 1 0.01
99 34 0.47
100 7 0.10
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.26
Consensus pattern (96 bp):
GCCAACACCACGTCCCAAACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAG
ACATGGTCTTACACTGACTATCATCATCGAG
Found at i:36260372 original size:46 final size:46
Alignment explanation
Indices: 36260316--36260442 Score: 157
Period size: 46 Copynumber: 2.7 Consensus size: 46
36260306 TCTCGTAGCC
* * *
36260316 GATGCATGTCCTAGACCTGTCTTACACTGGCT-TACGTCTCAAGGGT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAAGGGT
***
36260362 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATATT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAGGGT
*
36260408 GATGCCATGTCCCAAACATAGTCTTACACTAGCTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTC
36260443 ATGATAACCC
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
46 42 0.59
47 14 0.20
48 15 0.21
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAGGGT
Found at i:36264939 original size:11 final size:11
Alignment explanation
Indices: 36264923--36264947 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
36264913 GAATGAGTAG
36264923 ATCCCGGATCA
1 ATCCCGGATCA
36264934 ATCCCGGATCA
1 ATCCCGGATCA
36264945 ATC
1 ATC
36264948 AAAGTAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.36, G:0.16, T:0.20
Consensus pattern (11 bp):
ATCCCGGATCA
Found at i:36266673 original size:22 final size:22
Alignment explanation
Indices: 36266648--36266726 Score: 113
Period size: 22 Copynumber: 3.6 Consensus size: 22
36266638 ACACAGTGGC
36266648 ACACGCCCGTGTGGAAGGGGCA
1 ACACGCCCGTGTGGAAGGGGCA
*
36266670 ACACGCCCGTGTGGGAGGGGCA
1 ACACGCCCGTGTGGAAGGGGCA
* * * *
36266692 ACACGCCAGTATAGAAGGGCCA
1 ACACGCCCGTGTGGAAGGGGCA
36266714 ACACGCCCGTGTG
1 ACACGCCCGTGTG
36266727 ACCAATTCGA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.24, C:0.29, G:0.37, T:0.10
Consensus pattern (22 bp):
ACACGCCCGTGTGGAAGGGGCA
Found at i:36268265 original size:70 final size:71
Alignment explanation
Indices: 36268182--36268344 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
36268172 CGATTTGTCT
36268182 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36268246 CTTTCA
66 CTTTCA
*
36268252 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36268317 CTTTCA
66 CTTTCA
36268323 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
36268345 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:36268382 original size:71 final size:70
Alignment explanation
Indices: 36268182--36268378 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
36268172 CGATTTGTCT
* * * *
36268182 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
36268246 CTTTCA
65 CTTTCA
* * * *
36268252 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
36268317 CTTTCA
65 CTTTCA
* *
36268323 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
36268379 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:36275792 original size:70 final size:71
Alignment explanation
Indices: 36275709--36275871 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
36275699 CGATTTGTCT
36275709 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36275773 CTTTCA
66 CTTTCA
*
36275779 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36275844 CTTTCA
66 CTTTCA
36275850 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
36275872 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:36275909 original size:71 final size:70
Alignment explanation
Indices: 36275709--36275905 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
36275699 CGATTTGTCT
* * * *
36275709 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
36275773 CTTTCA
65 CTTTCA
* * * *
36275779 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
36275844 CTTTCA
65 CTTTCA
* *
36275850 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
36275906 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:36284666 original size:22 final size:21
Alignment explanation
Indices: 36284626--36284666 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
36284616 CACTAGACAC
*
36284626 AGGGGCACACGCCCGTGTGGA
1 AGGGGCACACGCCCATGTGGA
*
36284647 AGGGGCAACACGCTCATGTG
1 AGGGGC-ACACGCCCATGTG
36284667 ACCAATTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.22, C:0.27, G:0.39, T:0.12
Consensus pattern (21 bp):
AGGGGCACACGCCCATGTGGA
Found at i:36285965 original size:46 final size:47
Alignment explanation
Indices: 36285876--36286050 Score: 193
Period size: 46 Copynumber: 3.8 Consensus size: 47
36285866 ACATATTTGT
* *
36285876 GCCGATGCCATGTCCCAGACTTGGTCTTACACTGGC--ACATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCG-A
*
36285922 GCCGATG-CATGTCCTAGACAT-GTCTTACACTGGCTTACGTCTCGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGA
* * * *
36285967 GCTTGATG-CATGTCCCAGACA-AGTCTTACACTAGCTCT-CGTCTCAA
1 GC-CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACGTCTCGA
*
36286013 TGCCGATGCCATGTCCCTGACATGGTCTTACACTGGCT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
36286051 CATGATAACC
Statistics
Matches: 110, Mismatches: 11, Indels: 14
0.81 0.08 0.10
Matches are distributed among these distances:
44 13 0.12
45 15 0.14
46 54 0.49
47 15 0.14
48 13 0.12
ACGTcount: A:0.20, C:0.31, G:0.21, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGA
Found at i:36296315 original size:60 final size:60
Alignment explanation
Indices: 36296249--36296366 Score: 236
Period size: 60 Copynumber: 2.0 Consensus size: 60
36296239 AGCCATTTAA
36296249 TTTTCTTGCAATTTAATTTATTATATTATTATTATTACTAATTAATTTACTTTTTCTTAT
1 TTTTCTTGCAATTTAATTTATTATATTATTATTATTACTAATTAATTTACTTTTTCTTAT
36296309 TTTTCTTGCAATTTAATTTATTATATTATTATTATTACTAATTAATTTACTTTTTCTT
1 TTTTCTTGCAATTTAATTTATTATATTATTATTATTACTAATTAATTTACTTTTTCTT
36296367 TCTCTTGGCA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.28, C:0.08, G:0.02, T:0.62
Consensus pattern (60 bp):
TTTTCTTGCAATTTAATTTATTATATTATTATTATTACTAATTAATTTACTTTTTCTTAT
Found at i:36303028 original size:18 final size:18
Alignment explanation
Indices: 36303005--36303040 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
36302995 AATTTTTGAA
36303005 TTCGAAT-AACTCGAATAT
1 TTCGAATAAAC-CGAATAT
36303023 TTCGAATAAACCGAATAT
1 TTCGAATAAACCGAATAT
36303041 AAACTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.82
19 3 0.18
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.31
Consensus pattern (18 bp):
TTCGAATAAACCGAATAT
Found at i:36303334 original size:3 final size:3
Alignment explanation
Indices: 36303326--36303351 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
36303316 AAATAAACTC
36303326 TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TC
36303352 ACATCAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:36303676 original size:17 final size:17
Alignment explanation
Indices: 36303626--36303676 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
36303616 TTATAACTTG
36303626 AATATTATAAATT-TTA
1 AATATTATAAATTCTTA
* * *
36303642 GA-ATTAGAAAAATCTTA
1 AATATTA-TAAATTCTTA
36303659 AATATTATAAATTCTTA
1 AATATTATAAATTCTTA
36303676 A
1 A
36303677 TTCCAACTTG
Statistics
Matches: 26, Mismatches: 6, Indels: 5
0.70 0.16 0.14
Matches are distributed among these distances:
15 4 0.15
16 5 0.19
17 13 0.50
18 4 0.15
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (17 bp):
AATATTATAAATTCTTA
Found at i:36309898 original size:40 final size:39
Alignment explanation
Indices: 36309853--36309979 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
36309843 CGGAACATAA
36309853 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
36309893 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
36309933 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
36309973 CCGGATA
1 CCGGATA
36309980 AATTTCCAGC
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:36312510 original size:28 final size:29
Alignment explanation
Indices: 36312476--36312562 Score: 122
Period size: 29 Copynumber: 3.0 Consensus size: 29
36312466 ATACCTGTAA
*
36312476 ATAGCCCACTAGGCCCAA-TCACATTTAT
1 ATAGCCCATTAGGCCCAAGTCACATTTAT
*
36312504 TTAGCCCATTAGGCCCAAGTCACATTTAT
1 ATAGCCCATTAGGCCCAAGTCACATTTAT
* * *
36312533 ATGGCCCATTAGGCCCAATTCACACTTAT
1 ATAGCCCATTAGGCCCAAGTCACATTTAT
36312562 A
1 A
36312563 GTCATGCTCA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 16 0.31
29 36 0.69
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.28
Consensus pattern (29 bp):
ATAGCCCATTAGGCCCAAGTCACATTTAT
Found at i:36312765 original size:16 final size:16
Alignment explanation
Indices: 36312746--36312782 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
36312736 AAATTTTCAG
*
36312746 CTTTTTAGTATTTCGA
1 CTTTTTAGCATTTCGA
*
36312762 CTTTTTGGCATTTCGA
1 CTTTTTAGCATTTCGA
36312778 CTTTT
1 CTTTT
36312783 GTTGATCTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.57
Consensus pattern (16 bp):
CTTTTTAGCATTTCGA
Found at i:36317318 original size:18 final size:18
Alignment explanation
Indices: 36317295--36317331 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
36317285 GTTCATCAAT
36317295 GAAAGTACATTTCCTTTC
1 GAAAGTACATTTCCTTTC
36317313 GAAAGTACATTTCCTTTC
1 GAAAGTACATTTCCTTTC
36317331 G
1 G
36317332 TGTTCTTGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.38
Consensus pattern (18 bp):
GAAAGTACATTTCCTTTC
Found at i:36328241 original size:24 final size:25
Alignment explanation
Indices: 36328216--36328261 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
36328206 AATGAGGAGA
36328216 AAAG-AGGAGGAAAG-AAGAAAGGG
1 AAAGAAGGAGGAAAGAAAGAAAGGG
36328239 AAAGAAGGAGGAAAGAAAGAAAG
1 AAAGAAGGAGGAAAGAAAGAAAG
36328262 AAGAGAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 4 0.19
24 10 0.48
25 7 0.33
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (25 bp):
AAAGAAGGAGGAAAGAAAGAAAGGG
Found at i:36328253 original size:11 final size:11
Alignment explanation
Indices: 36328210--36328274 Score: 50
Period size: 11 Copynumber: 6.1 Consensus size: 11
36328200 GAGAGAAATG
*
36328210 AGGAGAAAAG-
1 AGGAGGAAAGA
36328220 AGGAGGAAAGA
1 AGGAGGAAAGA
*
36328231 AGAAAGGGAAAGA
1 AG-GA-GGAAAGA
36328244 AGGAGGAAAGA
1 AGGAGGAAAGA
36328255 A--A-GAAAGA
1 AGGAGGAAAGA
36328263 A-GAGAGAAAGA
1 AGGAG-GAAAGA
36328274 A
1 A
36328275 AGAAAAAGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
8 7 0.15
9 2 0.04
10 9 0.20
11 17 0.37
12 2 0.04
13 9 0.20
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (11 bp):
AGGAGGAAAGA
Found at i:36328258 original size:15 final size:15
Alignment explanation
Indices: 36328225--36328298 Score: 78
Period size: 15 Copynumber: 4.7 Consensus size: 15
36328215 AAAAGAGGAG
36328225 GAAAGAAGAAAGGGAAA
1 GAAAGAAGAAA--GAAA
* *
36328242 GAAGGAGGAAAGAAA
1 GAAAGAAGAAAGAAA
*
36328257 GAAAGAAGAGAGAAA
1 GAAAGAAGAAAGAAA
36328272 GAAAGAA-AAAGAAA
1 GAAAGAAGAAAGAAA
36328286 GGAAAAGAAGAAA
1 -G-AAAGAAGAAA
36328299 AAGGGAGGGG
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
14 6 0.12
15 24 0.50
16 6 0.12
17 12 0.25
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (15 bp):
GAAAGAAGAAAGAAA
Found at i:36328262 original size:19 final size:19
Alignment explanation
Indices: 36328238--36328283 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
36328228 AGAAGAAAGG
36328238 GAAAGAAG-GAGGAAAGAAA
1 GAAAGAAGAGA-GAAAGAAA
36328257 GAAAGAAGAGAGAAAGAAA
1 GAAAGAAGAGAGAAAGAAA
36328276 GAAA-AAGA
1 GAAAGAAGA
36328284 AAGGAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.15
19 20 0.77
20 2 0.08
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (19 bp):
GAAAGAAGAGAGAAAGAAA
Found at i:36328290 original size:19 final size:19
Alignment explanation
Indices: 36328247--36328301 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
36328237 GGAAAGAAGG
*
36328247 AGGAAAGAAAGAAAGAAGAG
1 AGGAAAGAAAGAAA-AAGAA
36328267 A-GAAAGAAAGAAAAAGAA
1 AGGAAAGAAAGAAAAAGAA
36328285 AGGAAA-AGAAGAAAAAG
1 AGGAAAGA-AAGAAAAAG
36328302 GGAGGGGGTC
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
18 6 0.19
19 25 0.78
20 1 0.03
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (19 bp):
AGGAAAGAAAGAAAAAGAA
Found at i:36328348 original size:6 final size:6
Alignment explanation
Indices: 36328337--36328366 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
36328327 GATGGTCGGA
36328337 GGAGGG GGA-GG GGAGGG GGAGGG GGAGGG G
1 GGAGGG GGAGGG GGAGGG GGAGGG GGAGGG G
36328367 AGGCACGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.17, C:0.00, G:0.83, T:0.00
Consensus pattern (6 bp):
GGAGGG
Found at i:36328359 original size:17 final size:17
Alignment explanation
Indices: 36328337--36328369 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
36328327 GATGGTCGGA
36328337 GGAGGGGGAGGGGAGGG
1 GGAGGGGGAGGGGAGGG
36328354 GGAGGGGGAGGGGAGG
1 GGAGGGGGAGGGGAGG
36328370 CACGGTTGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.00, G:0.82, T:0.00
Consensus pattern (17 bp):
GGAGGGGGAGGGGAGGG
Found at i:36328369 original size:11 final size:12
Alignment explanation
Indices: 36328337--36328366 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
36328327 GATGGTCGGA
36328337 GGAGGGGGA-GG
1 GGAGGGGGAGGG
36328348 GGAGGGGGAGGG
1 GGAGGGGGAGGG
36328360 GGAGGGG
1 GGAGGGG
36328367 AGGCACGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.50
12 9 0.50
ACGTcount: A:0.17, C:0.00, G:0.83, T:0.00
Consensus pattern (12 bp):
GGAGGGGGAGGG
Found at i:36336914 original size:29 final size:29
Alignment explanation
Indices: 36336812--36336913 Score: 125
Period size: 29 Copynumber: 3.5 Consensus size: 29
36336802 GTGACGAGAT
36336812 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
36336841 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
36336870 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
36336899 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
36336914 GGGTTTAAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 61 0.98
30 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:36336970 original size:28 final size:28
Alignment explanation
Indices: 36336901--36337001 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
36336891 GAAGGGTATG
* * * *
36336901 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
36336931 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
36336959 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
36336988 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
36337002 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:36344752 original size:29 final size:29
Alignment explanation
Indices: 36344621--36344751 Score: 183
Period size: 29 Copynumber: 4.5 Consensus size: 29
36344611 GTGACGAGAT
36344621 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
36344650 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
36344679 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
36344708 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
36344737 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
36344752 GGGTTTAAAA
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
29 90 0.99
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:36344808 original size:28 final size:28
Alignment explanation
Indices: 36344739--36344839 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
36344729 GAAGGGTATG
* * * *
36344739 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
36344769 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
36344797 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
36344826 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
36344840 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:36349542 original size:29 final size:29
Alignment explanation
Indices: 36349506--36349666 Score: 304
Period size: 29 Copynumber: 5.6 Consensus size: 29
36349496 TGTTGAAAAA
*
36349506 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
36349535 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
36349564 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
36349593 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
36349622 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
36349651 CTCGCACACATAGTGC
1 CTCGCACACATAGTGC
36349667 TCGGTTAACG
Statistics
Matches: 130, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 130 1.00
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACTGAT
Found at i:36349687 original size:87 final size:87
Alignment explanation
Indices: 36349506--36349698 Score: 300
Period size: 87 Copynumber: 2.2 Consensus size: 87
36349496 TGTTGAAAAA
36349506 CTCGCACACACAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCAATTACTGATCTCGCAC
1 CTCGCACACACAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCAATTACTGATCTCGCAC
*
36349571 ACATAGTGCCTCAATTACTGAT
66 ACATAGTGCCTCAATTACGGAT
* *
36349593 CTCGCACACATAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCGATTACTGATCTCGCAC
1 CTCGCACACACAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCAATTACTGATCTCGCAC
**
36349658 ACATAGTG-CTCGGTTAACGGAAT
66 ACATAGTGCCTCAATT-ACGG-AT
*
36349681 -TTGCACACACAGTGCCTC
1 CTCGCACACACAGTGCCTC
36349699 TAATCATTCG
Statistics
Matches: 97, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
86 5 0.05
87 90 0.93
88 2 0.02
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (87 bp):
CTCGCACACACAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCAATTACTGATCTCGCAC
ACATAGTGCCTCAATTACGGAT
Done.