Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 122 of 325
Found at i:36746504 original size:40 final size:39
Alignment explanation
Indices: 36746339--36746522 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
36746329 AAATTGAATG
* * *
36746339 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
36746379 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
36746419 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
36746459 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
36746498 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
36746523 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:36746547 original size:80 final size:81
Alignment explanation
Indices: 36746379--36746567 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
36746369 GCTGGAAATT
* * * *
36746379 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
36746444 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
36746460 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
36746523 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
36746539 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
36746568 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:36759218 original size:6 final size:6
Alignment explanation
Indices: 36759207--36759303 Score: 92
Period size: 6 Copynumber: 16.3 Consensus size: 6
36759197 AATCCTCCTA
* *
36759207 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA- -TTTAT TCTTAT TCTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* * * * *
36759253 TTTCTTT TATTTA- TTTTAT TCTTAT TTTGAT TTTGAT TTTTAT TTTCAT
1 TTT-TAT T-TTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
36759302 TT
1 TT
36759304 CAATTTTCTT
Statistics
Matches: 77, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
4 4 0.05
5 4 0.05
6 63 0.82
7 4 0.05
8 2 0.03
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:36759532 original size:45 final size:45
Alignment explanation
Indices: 36759468--36759560 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
36759458 ATATTTTACG
36759468 CAATGAGGAAACAAATAGGGAACAATACCTAACGAGTGCCATGTT
1 CAATGAGGAAACAAATAGGGAACAATACCTAACGAGTGCCATGTT
36759513 CAATGAGGAAACAAATAGGGAACAATACCTAACGAGTGCCATGTT
1 CAATGAGGAAACAAATAGGGAACAATACCTAACGAGTGCCATGTT
36759558 CAA
1 CAA
36759561 CGACCCAATT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.43, C:0.18, G:0.22, T:0.17
Consensus pattern (45 bp):
CAATGAGGAAACAAATAGGGAACAATACCTAACGAGTGCCATGTT
Found at i:36763213 original size:46 final size:46
Alignment explanation
Indices: 36763163--36763338 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
36763153 TGGTTGAGCA
36763163 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
36763209 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAAAT-CTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* *
36763254 CATCCGAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
36763302 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36763339 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 11, Indels: 22
0.77 0.08 0.16
Matches are distributed among these distances:
42 7 0.06
43 3 0.03
45 2 0.02
46 60 0.56
47 25 0.23
48 2 0.02
50 2 0.02
51 7 0.06
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:36763319 original size:93 final size:93
Alignment explanation
Indices: 36763160--36763329 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
36763150 GGATGGTTGA
* *
36763160 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
36763225 TGAGTCCGAGTTTGTGAAATCTAACTAG
66 TGAGTCCGAGTTTGTGAAATCTAACTAG
* *
36763253 GCATCCGAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
36763318 TGAGTCCGAGTT
66 TGAGTCCGAGTT
36763330 CACTTATGGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAAATCTAACTAG
Found at i:36763596 original size:19 final size:20
Alignment explanation
Indices: 36763559--36763596 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
36763549 ATAAGGTGGC
36763559 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
36763579 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
36763597 TGGTGGTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:36765029 original size:13 final size:13
Alignment explanation
Indices: 36765013--36765045 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
36765003 TTTAATTAAA
*
36765013 TTAGTTAATTAGT
1 TTAGATAATTAGT
36765026 TTAGATAATTAGT
1 TTAGATAATTAGT
36765039 TTA-ATAA
1 TTAGATAA
36765046 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:36769836 original size:27 final size:28
Alignment explanation
Indices: 36769780--36769849 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
36769770 AAATTTGTAC
36769780 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
36769808 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
36769835 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
36769850 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:36769860 original size:27 final size:27
Alignment explanation
Indices: 36769780--36769861 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
36769770 AAATTTGTAC
* *
36769780 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
36769808 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
36769835 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
36769862 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:36779138 original size:24 final size:27
Alignment explanation
Indices: 36779091--36779144 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 27
36779081 TTCTCCTAAA
* *
36779091 TTTCAAATTTATTTAATTATTTAAT-T
1 TTTCAAATTCATTGAATTATTTAATAT
36779117 TTTC-AATTCATTGAATTA-TTAATAT
1 TTTCAAATTCATTGAATTATTTAATAT
36779142 TTT
1 TTT
36779145 ATGCAAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.20
25 16 0.64
26 4 0.16
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (27 bp):
TTTCAAATTCATTGAATTATTTAATAT
Found at i:36781447 original size:38 final size:38
Alignment explanation
Indices: 36781405--36781481 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
36781395 ATGATTTTTC
*
36781405 AGTCATTATTTAACTAAATTGTGTTTGATTAACTTGTA
1 AGTCATTATTTAACTAAATTGTGTCTGATTAACTTGTA
*
36781443 AGTCATTATTTAACTAAATTGTGTCTGATTGACTTGTA
1 AGTCATTATTTAACTAAATTGTGTCTGATTAACTTGTA
36781481 A
1 A
36781482 CACTAACTCA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.45
Consensus pattern (38 bp):
AGTCATTATTTAACTAAATTGTGTCTGATTAACTTGTA
Found at i:36784511 original size:2 final size:2
Alignment explanation
Indices: 36784504--36784530 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
36784494 AGGATACTCC
36784504 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
36784531 GGAGATTAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:36791093 original size:25 final size:25
Alignment explanation
Indices: 36791046--36791093 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
36791036 ATGTGACTCT
*
36791046 GTATGTTGCCTTTGGGGCATATTTC
1 GTATGTTGCCTTTAGGGCATATTTC
* * *
36791071 GTATGTTTCCTTTATGGCGTATT
1 GTATGTTGCCTTTAGGGCATATT
36791094 CTATTTAGCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.12, C:0.15, G:0.25, T:0.48
Consensus pattern (25 bp):
GTATGTTGCCTTTAGGGCATATTTC
Found at i:36792901 original size:23 final size:23
Alignment explanation
Indices: 36792871--36792917 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
36792861 GAGCAAAGGT
36792871 ATCGATACCAAATCTCTATTCTA
1 ATCGATACCAAATCTCTATTCTA
36792894 ATCGATACCAAATCTCTATTCTA
1 ATCGATACCAAATCTCTATTCTA
36792917 A
1 A
36792918 CTTCCTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.34
Consensus pattern (23 bp):
ATCGATACCAAATCTCTATTCTA
Found at i:36801295 original size:37 final size:37
Alignment explanation
Indices: 36801245--36801322 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
36801235 AAAAGAGTAA
36801245 ACCCGACATGAAGAGAAGGGATTCGGCACCTACACTT
1 ACCCGACATGAAGAGAAGGGATTCGGCACCTACACTT
36801282 ACCCGACATGAAGAGAAGGGATTCGGCACCTACACTT
1 ACCCGACATGAAGAGAAGGGATTCGGCACCTACACTT
36801319 ACCC
1 ACCC
36801323 ACCAATTGCC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.32, C:0.29, G:0.23, T:0.15
Consensus pattern (37 bp):
ACCCGACATGAAGAGAAGGGATTCGGCACCTACACTT
Found at i:36804844 original size:39 final size:39
Alignment explanation
Indices: 36804790--36804871 Score: 155
Period size: 39 Copynumber: 2.1 Consensus size: 39
36804780 GTATGCCAGG
*
36804790 AATGCCTCATAACCCTTGCGAACCAGTTTCTCGGCCCTT
1 AATGCCTCATAACCCTTGCGAACCAATTTCTCGGCCCTT
36804829 AATGCCTCATAACCCTTGCGAACCAATTTCTCGGCCCTT
1 AATGCCTCATAACCCTTGCGAACCAATTTCTCGGCCCTT
36804868 AATG
1 AATG
36804872 TCGAAATCAC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.23, C:0.34, G:0.15, T:0.28
Consensus pattern (39 bp):
AATGCCTCATAACCCTTGCGAACCAATTTCTCGGCCCTT
Found at i:36810058 original size:25 final size:26
Alignment explanation
Indices: 36810023--36810073 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
36810013 ATGCATGGCT
36810023 ATATGAATGCAG-TATTTTCAAAAAAA
1 ATATGAATGCAGAT-TTTTCAAAAAAA
*
36810049 ATAT-AATGCAGATTTTTCCAAAAAA
1 ATATGAATGCAGATTTTTCAAAAAAA
36810074 TTTCCTACAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (26 bp):
ATATGAATGCAGATTTTTCAAAAAAA
Found at i:36811233 original size:2 final size:2
Alignment explanation
Indices: 36811226--36811251 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
36811216 GCATATTTAC
36811226 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
36811252 GTAACATCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36813695 original size:28 final size:28
Alignment explanation
Indices: 36813664--36813735 Score: 108
Period size: 28 Copynumber: 2.6 Consensus size: 28
36813654 TTGATATTTT
36813664 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
36813692 GCACACTAAGTGTCATTCTCAATATTTC
1 GCACACTAAGTGTCATTCTCAATATCTC
** *
36813720 ATACACTGAGTGTCAT
1 GCACACTAAGTGTCAT
36813736 ATTTGATTGC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.33
Consensus pattern (28 bp):
GCACACTAAGTGTCATTCTCAATATCTC
Found at i:36817726 original size:13 final size:13
Alignment explanation
Indices: 36817708--36817733 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36817698 AATGTCACAT
36817708 GCATATTCATATA
1 GCATATTCATATA
36817721 GCATATTCATATA
1 GCATATTCATATA
36817734 TAGTCAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
GCATATTCATATA
Found at i:36822206 original size:19 final size:18
Alignment explanation
Indices: 36822181--36822224 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
36822171 ACTCAATCCA
*
36822181 CCATTTCATATTTCATATT
1 CCATTTCACATTTCAT-TT
*
36822200 TCATTTCACATTTCATTT
1 CCATTTCACATTTCATTT
36822218 CCATTTC
1 CCATTTC
36822225 TCATGATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.23, C:0.25, G:0.00, T:0.52
Consensus pattern (18 bp):
CCATTTCACATTTCATTT
Found at i:36822207 original size:12 final size:12
Alignment explanation
Indices: 36822190--36822224 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
36822180 ACCATTTCAT
*
36822190 ATTTCATATTTC
1 ATTTCACATTTC
36822202 ATTTCACATTTC
1 ATTTCACATTTC
36822214 ATTTC-CATTTC
1 ATTTCACATTTC
36822225 TCATGATTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 6 0.27
12 16 0.73
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (12 bp):
ATTTCACATTTC
Found at i:36824784 original size:49 final size:49
Alignment explanation
Indices: 36824705--36824816 Score: 192
Period size: 49 Copynumber: 2.3 Consensus size: 49
36824695 ATGATGAAAA
*
36824705 AAGAAA-AAGAAAG-AAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAG
1 AAGAAAGAA-AAAGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCAAATAG
36824753 AAGAAAGAAAAAGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCAAATAG
1 AAGAAAGAAAAAGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCAAATAG
36824802 AAGAAAGAAAAAGAA
1 AAGAAAGAAAAAGAA
36824817 GGAAAAAGAG
Statistics
Matches: 61, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
48 10 0.16
49 51 0.84
ACGTcount: A:0.52, C:0.11, G:0.20, T:0.18
Consensus pattern (49 bp):
AAGAAAGAAAAAGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCAAATAG
Found at i:36826121 original size:40 final size:40
Alignment explanation
Indices: 36826066--36826320 Score: 342
Period size: 40 Copynumber: 6.5 Consensus size: 40
36826056 TGGATGATAA
* * *
36826066 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
36826106 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
36826146 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36826186 CC-GGATAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36826224 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
36826264 CCGGGCTATGTCCCGAAGGCA-TTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
36826303 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36826321 TACTTGGCTT
Statistics
Matches: 194, Mismatches: 17, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
38 35 0.18
39 48 0.25
40 111 0.57
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36826239 original size:78 final size:79
Alignment explanation
Indices: 36826066--36826320 Score: 347
Period size: 78 Copynumber: 3.2 Consensus size: 79
36826056 TGGATGATAA
* * *
36826066 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCA-TT
* *
36826130 GTGCGAGTTATTACAT
64 GTGCGAGTTACTATAT
*
36826146 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC-GGATAAGTCCCGAAGGCATTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGT
36826210 GCGAGTTACTATAT
66 GCGAGTTACTATAT
* * *
36826224 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTGA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGT
*
36826289 GCTAG-TAGCTATAT
66 GCGAGTTA-CTATAT
* *
36826303 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36826321 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 13, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
78 73 0.46
79 49 0.31
80 37 0.23
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGT
GCGAGTTACTATAT
Found at i:36826281 original size:118 final size:117
Alignment explanation
Indices: 36826072--36826320 Score: 351
Period size: 118 Copynumber: 2.1 Consensus size: 117
36826062 ATAACCGGGC
*
36826072 TAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGCGC-AGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGGTGCGAG
* *
36826137 TTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGA
65 TTACTACATCCGGGCTAAGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCCGGA
*
36826191 TAAGTCCCGAAGGCATTGTGCG-AGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTGGTGCGA
1 TAAGTCCCGAAGGCATT-TGCGCAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTGGTGCGA
* * * *
36826254 GTTACTATATCCGGGCTATGTCCCGAAGGCATTGAGCTAGTAGCTATATCCGGT
64 GTTACTACATCCGGGCTAAGTCCCGAAGGCATTGAGCGAGTAGCTATATCCGGA
*
36826308 TAAATCCCGAAGG
1 TAAGTCCCGAAGG
36826321 TACTTGGCTT
Statistics
Matches: 118, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
116 2 0.02
117 30 0.25
118 65 0.55
119 17 0.14
120 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (117 bp):
TAAGTCCCGAAGGCATTTGCGCAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGT
TACTACATCCGGGCTAAGTCCCGAAGGCATTGAGCGAGTAGCTATATCCGGA
Found at i:36832930 original size:51 final size:51
Alignment explanation
Indices: 36832850--36832976 Score: 227
Period size: 51 Copynumber: 2.5 Consensus size: 51
36832840 GATGATGAAA
36832850 AAAGAAAAAGAAAGAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
1 AAAGAAAAAG-AAGAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
36832902 AAAGAAAAAGAAGAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
1 AAAGAAAAAGAAGAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
* *
36832953 AAAGAAAAAGAAGGAAAAAGAGCT
1 AAAGAAAAAGAAGAAAAAAAAGCT
36832977 TTGAGGAAAT
Statistics
Matches: 73, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
51 63 0.86
52 10 0.14
ACGTcount: A:0.51, C:0.10, G:0.22, T:0.17
Consensus pattern (51 bp):
AAAGAAAAAGAAGAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
Found at i:36834272 original size:40 final size:40
Alignment explanation
Indices: 36834217--36834473 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
36834207 TGGATGATAA
* * *
36834217 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
36834257 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36834297 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
36834337 CCGGGATAAGTCCCGAAGGCATTGGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36834377 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36834417 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* * *
36834456 -CTGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36834474 TACTTGGCTT
Statistics
Matches: 194, Mismatches: 21, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
38 16 0.08
39 13 0.07
40 165 0.85
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36836968 original size:26 final size:26
Alignment explanation
Indices: 36836939--36836994 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
36836929 TGGTACAAAT
36836939 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
36836965 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
36836991 TGAT
1 TGAT
36836995 GGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:36840734 original size:27 final size:29
Alignment explanation
Indices: 36840668--36840734 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 29
36840658 TTTTTAAAAA
*
36840668 TAATAAAATATATTATATGATATAATAGCT
1 TAAT-AAATATATTATATGAAATAATAGCT
*
36840698 TAATATATAT-TTATAT-AAATAATA-CT
1 TAATAAATATATTATATGAAATAATAGCT
*
36840724 ATATTAAATAT
1 -TAATAAATAT
36840735 GTATGAAACT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
26 2 0.06
27 15 0.47
28 6 0.19
29 5 0.16
30 4 0.12
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (29 bp):
TAATAAATATATTATATGAAATAATAGCT
Found at i:36840884 original size:9 final size:10
Alignment explanation
Indices: 36840863--36840935 Score: 51
Period size: 10 Copynumber: 7.1 Consensus size: 10
36840853 TTGAAGTAAT
36840863 ATAAAATATA
1 ATAAAATATA
36840873 ATAAAA-ATA
1 ATAAAATATA
*
36840882 ATATAATGAATA
1 ATAAAAT--ATA
*
36840894 ATATATATATA
1 ATA-AAATATA
*
36840905 GTAAAATGAT-
1 ATAAAAT-ATA
* *
36840915 ATAATATATT
1 ATAAAATATA
36840925 ATAAAATATA
1 ATAAAATATA
36840935 A
1 A
36840936 ATAATAAAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
9 10 0.21
10 23 0.48
11 7 0.15
12 6 0.12
13 2 0.04
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (10 bp):
ATAAAATATA
Found at i:36840903 original size:18 final size:17
Alignment explanation
Indices: 36840868--36840956 Score: 62
Period size: 17 Copynumber: 5.3 Consensus size: 17
36840858 GTAATATAAA
36840868 ATATAATAA-AA-ATA-
1 ATATAATAATAATATAT
36840882 ATATAATGAATAATATAT
1 ATATAAT-AATAATATAT
*
36840900 ATATAGTAA-AATGATAT
1 ATATAATAATAAT-ATAT
* *
36840917 A-ATATATTATAAAATAT
1 ATATA-ATAATAATATAT
* *
36840934 AAATAATAAAAATAATAT
1 ATATAATAATAAT-ATAT
36840952 ATATA
1 ATATA
36840957 CTATTTTTAC
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
14 7 0.12
15 2 0.03
16 8 0.14
17 22 0.38
18 19 0.33
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (17 bp):
ATATAATAATAATATAT
Found at i:36848135 original size:18 final size:17
Alignment explanation
Indices: 36848114--36848173 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 17
36848104 ATTATAAAAA
36848114 TAAAAAATAATTTAAATT
1 TAAAAAATAA-TTAAATT
* *
36848132 TAAATTTAA-GATTAAATT
1 TAAA--AAATAATTAAATT
36848150 TAAAAATATAA-TAAATT
1 TAAAAA-ATAATTAAATT
36848167 TAAAAAA
1 TAAAAAA
36848174 AAATAGCATG
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
16 2 0.06
17 13 0.38
18 16 0.47
19 1 0.03
20 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (17 bp):
TAAAAAATAATTAAATT
Found at i:36848178 original size:16 final size:17
Alignment explanation
Indices: 36848116--36848178 Score: 56
Period size: 17 Copynumber: 3.7 Consensus size: 17
36848106 TATAAAAATA
**
36848116 AAAAATAATTTAAATTT
1 AAAAATAAAATAAATTT
** *
36848133 AAATTTAAGATTAAATTT
1 AAAAATAA-AATAAATTT
*
36848151 AAAAATATAATAAATTT
1 AAAAATAAAATAAATTT
36848168 AAAAA-AAAATA
1 AAAAATAAAATA
36848179 GCATGAAGTT
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
16 5 0.14
17 19 0.51
18 13 0.35
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
AAAAATAAAATAAATTT
Found at i:36848700 original size:19 final size:20
Alignment explanation
Indices: 36848676--36848714 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
36848666 ACCATTTTCT
36848676 GTTAAAAA-GAAAAAAAATA
1 GTTAAAAACGAAAAAAAATA
*
36848695 GTTAAAAACGGAAAAAAATA
1 GTTAAAAACGAAAAAAAATA
36848715 AAAAGTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.69, C:0.03, G:0.13, T:0.15
Consensus pattern (20 bp):
GTTAAAAACGAAAAAAAATA
Found at i:36849509 original size:151 final size:151
Alignment explanation
Indices: 36849235--36849555 Score: 522
Period size: 151 Copynumber: 2.1 Consensus size: 151
36849225 ATTTTTAAAG
* * * *
36849235 TTTTAAAATTTTCGAATTTTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTTATATTAT
1 TTTTAAAATTTTCGAATCTTATTTTTTAAAATATACTATTTTCCTATTCTATTTTTTTATATTAT
* * *
36849300 TTTATTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAATAACCTTA
66 TTTAATACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGCAAATAACCCTA
*
36849365 ATTTTGTTCC-TTTGTTTGTAT
131 ATTTTG-TCCGTTTATTTGTAT
36849386 TTTTAAAATTTTC-ATATCTTATTTTTTAAAATATACTATTTTCCTATTCTATTCTTTTTATATT
1 TTTTAAAATTTTCGA-ATCTTATTTTTTAAAATATACTATTTTCCTATTCTATT-TTTTTATATT
36849450 ATTTTAATACATAATGTTTCAAATGTATTATTTTAG-TTTTTTATATTAATTTAGCAAATAACCC
64 ATTTTAATACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGCAAATAACCC
36849514 TAATTTTGTCCGTTTATTTGTAT
129 TAATTTTGTCCGTTTATTTGTAT
36849537 TTTTAAAATTTTCGAATCT
1 TTTTAAAATTTTCGAATCT
36849556 AAATTTTATA
Statistics
Matches: 158, Mismatches: 8, Indels: 8
0.91 0.05 0.05
Matches are distributed among these distances:
150 4 0.03
151 108 0.68
152 46 0.29
ACGTcount: A:0.29, C:0.08, G:0.05, T:0.58
Consensus pattern (151 bp):
TTTTAAAATTTTCGAATCTTATTTTTTAAAATATACTATTTTCCTATTCTATTTTTTTATATTAT
TTTAATACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGCAAATAACCCTA
ATTTTGTCCGTTTATTTGTAT
Found at i:36853883 original size:2 final size:2
Alignment explanation
Indices: 36853876--36853910 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
36853866 TAGGGTTTGT
36853876 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
36853911 GCTGCCAATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:36857380 original size:21 final size:21
Alignment explanation
Indices: 36857354--36857395 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
36857344 TTTCCCTCAG
36857354 CAAATTACACAAAATCTTATT
1 CAAATTACACAAAATCTTATT
36857375 CAAATTACACAAAATCTTATT
1 CAAATTACACAAAATCTTATT
36857396 AAAAAAGGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (21 bp):
CAAATTACACAAAATCTTATT
Found at i:36858386 original size:88 final size:86
Alignment explanation
Indices: 36858081--36858599 Score: 399
Period size: 88 Copynumber: 6.0 Consensus size: 86
36858071 AAAATAAAAA
* *** *
36858081 AATTAAAATTAAATAAAATCTGTTTCAGGAATTTATTCATGCCGTTCAACAGATTTTATT-TCAT
1 AATTAAAATTAAATAAAATCTGTTTC-GGGATTTATTCCCACCGTTCAACAAATTTTATTCT-AT
36858145 TTTTTATTTTGTTTCCAAACGAG
64 TTTTTATTTTGTTTCCAAACGAG
* * * ** * * *
36858168 TATTAAAATTGAATAAAATCTGTTTCGAGATTTATTCCTGCTGTTCAACAGATTTTATTCAATTT
1 AATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCACCGTTCAACAAATTTTATTC--TAT
36858233 TTTTTATTTTGTTTCCAAACGAG
64 TTTTTATTTTGTTTCCAAACGAG
* * * * * *
36858256 TATTAAAATTAAAAAAAATATATATTTCAGGATTTATTCCCACTGTTCAACAAATTTTATTCTAT
1 AATTAAAATT-AAATAAA-ATCTGTTTCGGGATTTATTCCCACCGTTCAACAAATTTTATTCTAT
* *
36858321 TTATTATTTTGTTGCCAAACGAG
64 TTTTTATTTTGTTTCCAAACGAG
* * *
36858344 AAATTAAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCACCGTTTAACTAATTTTATTCCA-
1 -AATT-AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCACCGTTCAACAAATTTTATTCTAT
* * * **
36858408 TTTTAATTTAGTTTCTAAAATAG
64 TTTTTATTTTGTTTCCAAACGAG
* * * * * * * *
36858431 -ATTTAAATTGAAT-AATTTTGTTTTGGGGGTTTATTCCCACCG-TCTAACAGATTTTATTCGA-
1 AATTAAAATTAAATAAAATCTG-TTTCGGGATTTATTCCCACCGTTC-AACAAATTTTATTCTAT
* **
36858492 TTTTAATTTTGTTTCCAAAATAG
64 TTTTTATTTTGTTTCCAAACGAG
* * * * * * * * * * *
36858515 AATT-AAATTGAAT-AATTTTGTTTCAGGATTTATTCTCGCCATTTAACAGATTTTCTTCGA-TT
1 AATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCACCGTTCAACAAATTTTATTCTATTT
** *
36858577 TCGATTTTGCTTCCAAACGAG
66 TTTATTTTGTTTCCAAACGAG
36858598 AA
1 AA
36858600 GACTTAATCA
Statistics
Matches: 361, Mismatches: 60, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
83 56 0.16
84 78 0.22
85 6 0.02
86 29 0.08
87 40 0.11
88 95 0.26
89 15 0.04
90 42 0.12
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (86 bp):
AATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCACCGTTCAACAAATTTTATTCTATTT
TTTATTTTGTTTCCAAACGAG
Found at i:36858473 original size:84 final size:84
Alignment explanation
Indices: 36858376--36858537 Score: 263
Period size: 84 Copynumber: 1.9 Consensus size: 84
36858366 TGTTTCGGGA
* * *
36858376 TTTATTCCCACCGTTTAACTA-ATTTTATTCCATTTTAATTTAGTTTCTAAAATAGATTTAAATT
1 TTTATTCCCACCGTCTAAC-AGATTTTATTCCATTTTAATTTAGTTTCCAAAATAGAATTAAATT
36858440 GAATAATTTTGTTTTGGGGG
65 GAATAATTTTGTTTTGGGGG
* *
36858460 TTTATTCCCACCGTCTAACAGATTTTATTCGATTTTAATTTTGTTTCCAAAATAGAATTAAATTG
1 TTTATTCCCACCGTCTAACAGATTTTATTCCATTTTAATTTAGTTTCCAAAATAGAATTAAATTG
36858525 AATAATTTTGTTT
66 AATAATTTTGTTT
36858538 CAGGATTTAT
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
83 1 0.01
84 71 0.99
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.48
Consensus pattern (84 bp):
TTTATTCCCACCGTCTAACAGATTTTATTCCATTTTAATTTAGTTTCCAAAATAGAATTAAATTG
AATAATTTTGTTTTGGGGG
Found at i:36858591 original size:83 final size:83
Alignment explanation
Indices: 36858122--36858708 Score: 348
Period size: 88 Copynumber: 6.9 Consensus size: 83
36858112 TTTATTCATG
* * ** * *
36858122 CCGTTCAACAGATTTTATTTC-ATTTTTTATTTTGTTTCCAAACGAGTATTAAAATTGAATAAAA
1 CCGTTTAACAGATTTTA-TTCGA-TTTTAATTTTGTTTCCAAAATAGAATT-AAATTGAAT-AAT
* * **
36858186 TCTGTTTCGAGATTTATTCCTG
62 TTTGTTTCGGGATTTATTCCCA
* * * * ** * * *
36858208 CTGTTCAACAGATTTTATTCAATTTTTTTTATTTTGTTTCCAAACGAGTATTAAAATTAAAAAAA
1 CCGTTTAACAGATTTTATTCGA---TTTTAATTTTGTTTCCAAAATAGAATT-AAATT--GAATA
* * *
36858273 ATATATATTTCAGGATTTATTCCCA
60 AT-TTTGTTTCGGGATTTATTCCCA
* * * * * * ** *
36858298 CTGTTCAACAAATTTTATTCTATTTATTATTTTGTTGCCAAACGAGAAATTAAAAATTAAATAAA
1 CCGTTTAACAGATTTTATTCGATTT-TAATTTTGTTTCCAAAATAG-AATT--AAATTGAAT-AA
* *
36858363 ATCTGTTTCGGGATTTATTCCCA
61 TTTTGTTTCGGGATTTATTCCCA
* * * *
36858386 CCGTTTAACTA-ATTTTATTCCATTTTAATTTAGTTTCTAAAATAGATTTAAATTGAATAATTTT
1 CCGTTTAAC-AGATTTTATTCGATTTTAATTTTGTTTCCAAAATAGAATTAAATTGAATAATTTT
* *
36858450 GTTTTGGGGGTTTATTCCCA
65 G-TTTCGGGATTTATTCCCA
*
36858470 CCGTCTAACAGATTTTATTCGATTTTAATTTTGTTTCCAAAATAGAATTAAATTGAATAATTTTG
1 CCGTTTAACAGATTTTATTCGATTTTAATTTTGTTTCCAAAATAGAATTAAATTGAATAATTTTG
* * *
36858535 TTTCAGGATTTATTCTCG
66 TTTCGGGATTTATTCCCA
* * ** * * * **
36858553 CCATTTAACAGATTTTCTTCGATTTCGATTTTGCTTCCAAACGAGAAGACTT-AATCAAATAATT
1 CCGTTTAACAGATTTTATTCGATTTTAATTTTGTTTCCAAA--A-TAGAATTAAATTGAATAATT
* ** **
36858617 CTGTTTCGAAATTTATTCCTG
63 TTGTTTCGGGATTTATTCCCA
* * *
36858638 CCGTTTAACAGA--TT-TT--ATTTTGATTTTGTTTCCAAACA-AG-ATTTAATTAAATAATTTT
1 CCGTTTAACAGATTTTATTCGATTTTAATTTTGTTTCCAAA-ATAGAATTAAATTGAATAATTTT
* *
36858696 ATTTCGAGATTTA
65 GTTTCGGGATTTA
36858709 ATCTTGTCGT
Statistics
Matches: 415, Mismatches: 69, Indels: 43
0.79 0.13 0.08
Matches are distributed among these distances:
76 2 0.00
77 25 0.06
79 1 0.00
80 18 0.04
82 2 0.00
83 56 0.13
84 82 0.20
85 40 0.10
86 25 0.06
87 17 0.04
88 95 0.23
89 8 0.02
90 44 0.11
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.45
Consensus pattern (83 bp):
CCGTTTAACAGATTTTATTCGATTTTAATTTTGTTTCCAAAATAGAATTAAATTGAATAATTTTG
TTTCGGGATTTATTCCCA
Found at i:36858725 original size:77 final size:78
Alignment explanation
Indices: 36858573--36858746 Score: 197
Period size: 77 Copynumber: 2.2 Consensus size: 78
36858563 GATTTTCTTC
* * * *
36858573 GATTTCGATTTTGCTTCCAAACGAGAAGACTTAATCAAATAATTCTGTTTCGAAATTTATTCCTG
1 GATTTTGATTTTGTTTCCAAAC--GAAGACTTAATCAAATAATTCTATTTCGAAATTTAATCCTG
* *
36858638 CCGTTTAACAGATTT
64 CCGTTCAACAGACTT
* * * * * * *
36858653 TATTTTGATTTTGTTTCCAAAC-AAGATTTAATTAAATAATTTTATTTCGAGATTTAATCTTGTC
1 GATTTTGATTTTGTTTCCAAACGAAGACTTAATCAAATAATTCTATTTCGAAATTTAATCCTGCC
36858717 GTTCAACAGACTT
66 GTTCAACAGACTT
*
36858730 GATCTTGATTTTGTTTC
1 GATTTTGATTTTGTTTC
36858747 AGAAATTTAA
Statistics
Matches: 79, Mismatches: 15, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
77 60 0.76
80 19 0.24
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.44
Consensus pattern (78 bp):
GATTTTGATTTTGTTTCCAAACGAAGACTTAATCAAATAATTCTATTTCGAAATTTAATCCTGCC
GTTCAACAGACTT
Found at i:36859239 original size:40 final size:40
Alignment explanation
Indices: 36859182--36859270 Score: 133
Period size: 40 Copynumber: 2.2 Consensus size: 40
36859172 GAAAAACTCA
* * * *
36859182 AAGCATTAGCGGTGCTTTCCTGAAAATGCCGCTAAATATC
1 AAGCATTAGCGGCGCTTTCCCGAAAACGCCGCTAAAGATC
*
36859222 AAGCATTAGCTGCGCTTTCCCGAAAACGCCGCTAAAGATC
1 AAGCATTAGCGGCGCTTTCCCGAAAACGCCGCTAAAGATC
36859262 AAGCATTAG
1 AAGCATTAG
36859271 TGAAAGATCG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (40 bp):
AAGCATTAGCGGCGCTTTCCCGAAAACGCCGCTAAAGATC
Found at i:36859356 original size:98 final size:98
Alignment explanation
Indices: 36859187--36859368 Score: 276
Period size: 98 Copynumber: 1.9 Consensus size: 98
36859177 ACTCAAAGCA
* * ***
36859187 TTAGCGGTGCTTTCCTGAAAATGCCGCTAAATATCAAGCATTAGCTGCGCTTTCCCGAAAACGCC
1 TTAGCGGCGCTTTCCTGAAAATGCCGCTAAATATCAAGCATTAGCGGCGCTTTCAAAAAAACGCC
36859252 GCTAAAGATCAAGCATTAGTGAAAGATCGAGAT
66 GCTAAAGATCAAGCATTAGTGAAAGATCGAGAT
* *
36859285 TTAGCGGCGCTTTTC-GAAAAATGCTGCTAAATATCAAGCATTAGCGGCGCTTTCAAAAAAACGC
1 TTAGCGGCGCTTTCCTG-AAAATGCCGCTAAATATCAAGCATTAGCGGCGCTTTCAAAAAAACGC
*
36859349 CGCTAAAGATCGAGCATTAG
65 CGCTAAAGATCAAGCATTAG
36859369 CAGCGTTTTT
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
97 1 0.01
98 74 0.99
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.24
Consensus pattern (98 bp):
TTAGCGGCGCTTTCCTGAAAATGCCGCTAAATATCAAGCATTAGCGGCGCTTTCAAAAAAACGCC
GCTAAAGATCAAGCATTAGTGAAAGATCGAGAT
Found at i:36859385 original size:40 final size:40
Alignment explanation
Indices: 36859273--36859385 Score: 120
Period size: 40 Copynumber: 2.8 Consensus size: 40
36859263 AGCATTAGTG
* * *
36859273 AAAGATCGAG-ATTTAGCGGCGCTTTTCGAAAAATGCTGCT
1 AAAGATCGAGCA-TTAGCGGCGCTTTTAGAAAAACGCCGCT
* * * *
36859313 AAATATCAAGCATTAGCGGCGCTTTCAAAAAAACGCCGCT
1 AAAGATCGAGCATTAGCGGCGCTTTTAGAAAAACGCCGCT
* * *
36859353 AAAGATCGAGCATTAGCAGCGTTTTTTGAAAAA
1 AAAGATCGAGCATTAGCGGCGCTTTTAGAAAAA
36859386 TGCCACAAAA
Statistics
Matches: 58, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
40 57 0.98
41 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (40 bp):
AAAGATCGAGCATTAGCGGCGCTTTTAGAAAAACGCCGCT
Found at i:36859658 original size:14 final size:14
Alignment explanation
Indices: 36859641--36859691 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
36859631 TATTTTGTGA
36859641 TTAGAGTTTTGAGT
1 TTAGAGTTTTGAGT
* *
36859655 TTAGGGTTTAGAGT
1 TTAGAGTTTTGAGT
*
36859669 TTAAAGTTTGTG-GT
1 TTAGAGTTT-TGAGT
*
36859683 TTAGGGTTT
1 TTAGAGTTT
36859692 ATTTTTTATA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
14 28 0.97
15 1 0.03
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (14 bp):
TTAGAGTTTTGAGT
Found at i:36859676 original size:21 final size:21
Alignment explanation
Indices: 36859641--36859692 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
36859631 TATTTTGTGA
**
36859641 TTAGAGTTTTGAGTTTAG-GGT
1 TTAGAGTTTAAAGTTT-GTGGT
36859662 TTAGAGTTTAAAGTTTGTGGT
1 TTAGAGTTTAAAGTTTGTGGT
*
36859683 TTAGGGTTTA
1 TTAGAGTTTA
36859693 TTTTTTATAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 1 0.04
21 26 0.96
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (21 bp):
TTAGAGTTTAAAGTTTGTGGT
Found at i:36859921 original size:14 final size:13
Alignment explanation
Indices: 36859904--36859939 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
36859894 TGGTTTATGA
36859904 TTTAGGGGTTGGGG
1 TTTAGGGGTT-GGG
36859918 TTTAGGGGTTGGG
1 TTTAGGGGTTGGG
36859931 TTT-GGGGTT
1 TTTAGGGGTT
36859940 TATAGTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 6 0.27
13 6 0.27
14 10 0.45
ACGTcount: A:0.06, C:0.00, G:0.53, T:0.42
Consensus pattern (13 bp):
TTTAGGGGTTGGG
Found at i:36860761 original size:22 final size:22
Alignment explanation
Indices: 36860736--36860795 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
36860726 AAAATCTTCA
36860736 AAAAAATTTAAAATTTACAAA-T
1 AAAAAATTTAAAATTTA-AAACT
** *
36860758 AAAAAATAAAAAACTTAAAACT
1 AAAAAATTTAAAATTTAAAACT
* *
36860780 TAAAAATTTAATATTT
1 AAAAAATTTAAAATTT
36860796 TAGTCCATAT
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
21 3 0.10
22 26 0.90
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (22 bp):
AAAAAATTTAAAATTTAAAACT
Found at i:36862448 original size:39 final size:39
Alignment explanation
Indices: 36862345--36862546 Score: 175
Period size: 39 Copynumber: 5.2 Consensus size: 39
36862335 GAATCACGTA
* ** *
36862345 CCTTCGGAGT-TTAACCGGATATAGCT-ACTCGTTCAAATA
1 CCTTCGGA-TCTTAACCGGATTTAG-TAACTCGCACAAATG
* * *
36862384 CCTTCGGA-CATAGCCCGG-TTATAGTAGCTCGCACAAATG
1 CCTTCGGATCTTA-ACCGGATT-TAGTAACTCGCACAAATG
36862423 CCTTCGGGA-CTTAACCGGATTTAGTAACTCGCACAAATG
1 CCTTC-GGATCTTAACCGGATTTAGTAACTCGCACAAATG
*
36862462 -CTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGATCTTA-ACCGGATTTAGTAACTCGCACAAATG
** * * *
36862501 CCTTCGGATCTTAGTCGGATATAGTCACTTAGCACAAA-G
1 CCTTCGGATCTTAACCGGATTTAGTAAC-TCGCACAAATG
36862540 CCTTCGG
1 CCTTCGG
36862547 GACTTAGCCC
Statistics
Matches: 137, Mismatches: 16, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
37 3 0.02
38 12 0.09
39 94 0.69
40 28 0.20
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (39 bp):
CCTTCGGATCTTAACCGGATTTAGTAACTCGCACAAATG
Found at i:36862520 original size:78 final size:79
Alignment explanation
Indices: 36862384--36862559 Score: 202
Period size: 78 Copynumber: 2.3 Consensus size: 79
36862374 CGTTCAAATA
* * *
36862384 CCTTC-GGACATAGCCCGG-TTATAGTAGCTCGCACAAATGCCTTCGGGACTTAACCGGATTTAG
1 CCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCGGATATAG
*
36862447 TAAC-TCGCACAAATG
65 TAACTTAGCACAAA-G
* **
36862462 -CTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCGGATATA
1 CCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCGGATATA
*
36862524 GTCACTTAGCACAAAG
64 GTAACTTAGCACAAAG
36862540 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
36862560 CATCATTCGA
Statistics
Matches: 83, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
77 10 0.12
78 46 0.55
79 24 0.29
80 3 0.04
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCGGATATAGT
AACTTAGCACAAAG
Found at i:36862553 original size:39 final size:39
Alignment explanation
Indices: 36862405--36862546 Score: 182
Period size: 39 Copynumber: 3.6 Consensus size: 39
36862395 AGCCCGGTTA
* **
36862405 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTAACCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCGGATT
36862444 TAGTAACTCGCACAAATG-CTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGT-CGGATT
*
36862483 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCGGATT
* *
36862522 TAGTCACTTAGCACAAA-GCCTTCGG
1 TAGTAAC-TCGCACAAATGCCTTCGG
36862547 GACTTAGCCC
Statistics
Matches: 93, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
37 3 0.03
38 8 0.09
39 60 0.65
40 22 0.24
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCGGATT
Found at i:36870573 original size:40 final size:38
Alignment explanation
Indices: 36870410--36870573 Score: 168
Period size: 40 Copynumber: 4.1 Consensus size: 38
36870400 CGGAGTTTAA
** * *
36870410 CCGGATATAGCTACTCGTTCAAATACCTTCGGGACATAGC
1 CCGGATATAG-TACTCGCACAAATGCCTTC-GGACTTAGC
* *
36870450 CCGGTTATAGTAGCTCGCACAAATGCCTTCGGACTTAAC
1 CCGGATATAGTA-CTCGCACAAATGCCTTCGGACTTAGC
* *
36870489 CCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGA-CTTAGC
*
36870529 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-AC-TCGCACAAATGCCTTC-GGACTTAGC
36870569 CCGGA
1 CCGGA
36870574 CATCATTCGA
Statistics
Matches: 105, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
39 38 0.36
40 56 0.53
41 11 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (38 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGACTTAGC
Found at i:36876658 original size:15 final size:16
Alignment explanation
Indices: 36876640--36876669 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
36876630 TTTTTGTCTC
36876640 ATATATGAT-TAAAAT
1 ATATATGATCTAAAAT
36876655 ATATATGATCTAAAA
1 ATATATGATCTAAAA
36876670 GCAAGAGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (16 bp):
ATATATGATCTAAAAT
Found at i:36880488 original size:48 final size:48
Alignment explanation
Indices: 36880417--36881138 Score: 832
Period size: 48 Copynumber: 15.0 Consensus size: 48
36880407 TGTACAAGAT
*
36880417 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
36880465 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
36880513 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
36880561 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAAT-G---A--CG
1 AAATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
36880603 -AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
36880650 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGC------G
1 AAATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
36880692 -AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * * *
36880739 AAATATATGTGTGATATGTATATGTGGTAAAGCCG-ATGTGGTAAAGCCG
1 AAATATATATGTGATATGTATATGTGGTAAAGCCGAATG-GCTAATG-TG
* * * * * ** * * *
36880788 -AATGGCTA-ATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATG-G
1 AAAT--ATATATGTGATATGTATATGTG----GTA-AAGCCG-AATGGCTAATGTG
* * *
36880841 CTAAAGTGAAATATATATGAGATATGTATATGTGGTAAATCCGAATGGCTAAAGTG
1 --AAA-T---ATA--TATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
36880897 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 AAATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
36880945 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
36880993 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
36881041 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 AAATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
36881089 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
36881137 AA
1 AA
36881139 TGTTGTAACA
Statistics
Matches: 574, Mismatches: 66, Indels: 68
0.81 0.09 0.10
Matches are distributed among these distances:
41 71 0.12
42 3 0.01
44 1 0.00
45 1 0.00
47 6 0.01
48 425 0.74
49 15 0.03
50 4 0.01
53 5 0.01
54 6 0.01
55 10 0.02
56 7 0.01
57 4 0.01
58 2 0.00
61 14 0.02
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
AAATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:36880581 original size:96 final size:96
Alignment explanation
Indices: 36880417--36881138 Score: 1040
Period size: 96 Copynumber: 7.5 Consensus size: 96
36880407 TGTACAAGAT
* * * *
36880417 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
36880482 GTATATGTGGTAAAGCCGAATGGCTAATGTG
66 GTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
36880513 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
*
36880578 GTATATGTGGTAAAGCCGAAT-G---A--CG
66 GTATATGTGGTAAAGCCGAATGGCTAATGTG
*
36880603 -AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
36880667 GTATATGTGGTAAAGCCGAATGGC------G
66 GTATATGTGGTAAAGCCGAATGGCTAATGTG
*
36880692 -AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
36880756 GTATATGTGGTAAAGCCGATGTGGTAAAGCCGAATGGCTAATGTG
66 G--TA-----T-------ATGTGGTAAAGCCGAATGGCTAATGTG
* * * * *
36880801 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAAAGTGAAATATATATGAGATAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
* *
36880866 GTATATGTGGTAAATCCGAATGGCTAAAGTG
66 GTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
36880897 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGATAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
36880962 GTATATGTGGTAAAGCCGAATGGCTAATGTG
66 GTATATGTGGTAAAGCCGAATGGCTAATGTG
36880993 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
*
36881058 GTATATGTGGTAAAGCCGAATGGCGAATGTG
66 GTATATGTGGTAAAGCCGAATGGCTAATGTG
*
36881089 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
36881139 TGTTGTAACA
Statistics
Matches: 576, Mismatches: 27, Indels: 46
0.89 0.04 0.07
Matches are distributed among these distances:
89 148 0.26
90 2 0.00
91 2 0.00
92 1 0.00
95 1 0.00
96 339 0.59
103 21 0.04
108 2 0.00
109 1 0.00
110 59 0.10
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (96 bp):
AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
GTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:36880618 original size:41 final size:41
Alignment explanation
Indices: 36880573--36880729 Score: 206
Period size: 41 Copynumber: 3.7 Consensus size: 41
36880563 ATATATGTGT
36880573 GATATGTATATGTGGTAAAGCCGAATGACGAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGACGAATATGTATGA
* * * *
36880614 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAAT-G---A--CG-AATATGTATGA
*
36880662 GATATGTATATGTGGTAAAGCCGAATGGCGAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGACGAATATGTATGA
36880703 GATATGTATATGTGGTAAAGCCGAATG
1 GATATGTATATGTGGTAAAGCCGAATG
36880730 GCTAATGTGA
Statistics
Matches: 100, Mismatches: 9, Indels: 14
0.81 0.07 0.11
Matches are distributed among these distances:
41 61 0.61
42 2 0.02
45 1 0.01
47 2 0.02
48 34 0.34
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (41 bp):
GATATGTATATGTGGTAAAGCCGAATGACGAATATGTATGA
Found at i:36880619 original size:144 final size:144
Alignment explanation
Indices: 36880417--36881138 Score: 972
Period size: 144 Copynumber: 5.0 Consensus size: 144
36880407 TGTACAAGAT
* * * *
36880417 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATAGATATGAGATAT
36880482 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCC
66 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCC
36880547 GAATGGCTAATGTG
131 GAATGGCTAATGTG
* * * *
36880561 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGAC-GA-AT---AT-G-TATGAGATAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATAGATATGAGATAT
36880619 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCC
66 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCC
36880684 GAATGGC------G
131 GAATGGCTAATGTG
* *
36880692 -AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATG-AA-ATA-----GATAT
* * *
36880756 GTATATGTGGTAAAGCCGATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
59 G-AGATAT-GT--A---TATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
*
36880821 TATGTGGTAAAGCCGAATGGCTAAAGTG
117 TATGTGGTAAAGCCGAATGGCTAATGTG
*
36880849 AAATATATATGAGATATGTATATGTGGTAAATCCGAATGGCTAA-AGTGAAATATG-TATGAGAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATA-TGAAATA-GATATGAGAT
*
36880912 ATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAAG
64 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAG
36880977 CCGAATGGCTAATGTG
129 CCGAATGGCTAATGTG
* * * *
36880993 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATAGATATGAGATAT
* * * *
36881058 GTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
66 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCC
36881123 GAATGGCTAATGTG
131 GAATGGCTAATGTG
36881137 AA
1 AA
36881139 TGTTGTAACA
Statistics
Matches: 518, Mismatches: 29, Indels: 62
0.85 0.05 0.10
Matches are distributed among these distances:
130 36 0.07
131 2 0.00
132 1 0.00
137 84 0.16
139 2 0.00
142 1 0.00
143 2 0.00
144 253 0.49
145 4 0.01
146 2 0.00
147 1 0.00
148 1 0.00
149 2 0.00
150 4 0.01
151 72 0.14
152 2 0.00
156 3 0.01
157 3 0.01
158 43 0.08
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (144 bp):
AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATAGATATGAGATAT
GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCC
GAATGGCTAATGTG
Found at i:36880779 original size:14 final size:14
Alignment explanation
Indices: 36880760--36880788 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
36880750 TGATATGTAT
36880760 ATGTGGTAAAGCCG
1 ATGTGGTAAAGCCG
36880774 ATGTGGTAAAGCCG
1 ATGTGGTAAAGCCG
36880788 A
1 A
36880789 ATGGCTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.21
Consensus pattern (14 bp):
ATGTGGTAAAGCCG
Found at i:36880781 original size:62 final size:62
Alignment explanation
Indices: 36880712--36880836 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
36880702 AGATATGTAT
36880712 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
36880774 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
36880836 A
1 A
36880837 ATGGCTAAAG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (62 bp):
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
Found at i:36881238 original size:37 final size:37
Alignment explanation
Indices: 36881183--36881253 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
36881173 GGAAATGTAT
* *
36881183 TCCGGGTAAGACCTGATGACTATGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
36881220 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
36881254 TCGTCTGAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:36885254 original size:49 final size:48
Alignment explanation
Indices: 36885201--36885518 Score: 475
Period size: 47 Copynumber: 6.7 Consensus size: 48
36885191 GATTTTACGC
* *
36885201 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTAT-AATATGTGATAAGGCCTAATGGCCGATGT
36885250 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATA-ATATGTGATAAGGCCTAATGGCCGATGT
36885299 GAT-AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATA-ATATGTGATAAGGCCTAATGGCCGATGT
36885347 GATGAATGTGAAAGTGTAT-ATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATAATATGTGATAAGGCCTAATGGCCGATGT
* * *
36885394 GATGAATGTGAAGGTGTAT-ATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATAATATGTGATAAGGCCTAATGGCCGATGT
* * * * *
36885441 GATGAATGTGAAAGTGTAT-ATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATAATATGTGATAAGGCCTAATGGCCGATGT
*
36885488 GATGGATGTGAAAGTGTATAA-ATGTGATAAG
1 GATGAATGTGAAAGTGTATAATATGTGATAAG
36885519 TCCCGAAGGC
Statistics
Matches: 255, Mismatches: 11, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
47 142 0.56
48 50 0.20
49 63 0.25
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (48 bp):
GATGAATGTGAAAGTGTATAATATGTGATAAGGCCTAATGGCCGATGT
Found at i:36890813 original size:9 final size:9
Alignment explanation
Indices: 36890801--36890857 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
36890791 TTTGATAAAC
36890801 ATGATATGT
1 ATGATATGT
*
36890810 ATGATATGCAC
1 ATGATATG--T
*
36890821 ATGACATGT
1 ATGATATGT
*
36890830 ATGATATGCAC
1 ATGATATG--T
36890841 ATGATATGT
1 ATGATATGT
36890850 ATGATATG
1 ATGATATG
36890858 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:36890824 original size:20 final size:20
Alignment explanation
Indices: 36890799--36890869 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
36890789 ATTTTGATAA
36890799 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
36890819 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
36890839 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
36890859 ACATGAGATGT
1 ACATGATATGT
36890870 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:36890846 original size:11 final size:11
Alignment explanation
Indices: 36890810--36890864 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
36890800 CATGATATGT
36890810 ATGATATGCAC
1 ATGATATGCAC
* *
36890821 ATGACATG--T
1 ATGATATGCAC
36890830 ATGATATGCAC
1 ATGATATGCAC
*
36890841 ATGATATG--T
1 ATGATATGCAC
36890850 ATGATATGCAC
1 ATGATATGCAC
36890861 ATGA
1 ATGA
36890865 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:36890959 original size:23 final size:24
Alignment explanation
Indices: 36890914--36891126 Score: 310
Period size: 24 Copynumber: 9.0 Consensus size: 24
36890904 GGAGGAAGTG
36890914 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
36890938 CAAAAGGGCTTATG-CCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
36890961 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
36890984 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
36891008 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
36891031 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
36891055 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
36891078 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
36891102 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
36891127 ATGATAAAGC
Statistics
Matches: 174, Mismatches: 9, Indels: 11
0.90 0.05 0.06
Matches are distributed among these distances:
22 12 0.07
23 62 0.36
24 89 0.51
25 11 0.06
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:36891021 original size:47 final size:47
Alignment explanation
Indices: 36890916--36891105 Score: 355
Period size: 47 Copynumber: 4.1 Consensus size: 47
36890906 AGGAAGTGCA
36890916 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
36890962 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
36891009 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
* *
36891056 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
36891103 AAA
1 AAA
36891106 AGAGGCTAGG
Statistics
Matches: 141, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
46 36 0.26
47 105 0.74
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:36894947 original size:40 final size:40
Alignment explanation
Indices: 36894902--36895069 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
36894892 CGGAATATAA
36894902 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
36894942 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
36894982 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
36895022 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
36895062 CCGGATAT
1 CCGGATAT
36895070 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:36895809 original size:24 final size:24
Alignment explanation
Indices: 36895780--36895832 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
36895770 ATCACTTAGT
36895780 TCATAACCAAAACATAATGTGCAA
1 TCATAACCAAAACATAATGTGCAA
36895804 TCATAACCAAAACATAATGTGCAA
1 TCATAACCAAAACATAATGTGCAA
36895828 TCATA
1 TCATA
36895833 TATATGCATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.49, C:0.21, G:0.08, T:0.23
Consensus pattern (24 bp):
TCATAACCAAAACATAATGTGCAA
Found at i:36899428 original size:49 final size:49
Alignment explanation
Indices: 36899370--36899758 Score: 656
Period size: 49 Copynumber: 8.0 Consensus size: 49
36899360 ATGAGTGTTA
*
36899370 GATGGGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
*
36899419 GATGTGATGAAAGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
36899468 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
*
36899517 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
*
36899566 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
* *
36899615 GATGTGATGAATGTG-AAA-GTGTATATATGTGATAAGGCCTAATGGCA
1 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
*
36899662 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGTC
1 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
* * * * *
36899711 GACGTGATGAATGTGAAAGTGTATATATATGTGGTAAAGCCGAATGGC
1 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGC
36899759 TAATGTGAAT
Statistics
Matches: 322, Mismatches: 16, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 42 0.13
48 5 0.02
49 275 0.85
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
Found at i:36899545 original size:147 final size:145
Alignment explanation
Indices: 36899369--36899758 Score: 663
Period size: 145 Copynumber: 2.7 Consensus size: 145
36899359 CATGAGTGTT
* *
36899369 AGATGGGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTG
1 AGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
36899434 AAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATG
66 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAA-GTATATATATG
36899499 TGATAAGGCCTAATGGC
129 TGATAAGGCCTAATGGC
* *
36899516 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
36899581 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
66 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTG
36899646 ATAAGGCCTAATGGC
131 ATAAGGCCTAATGGC
* *
36899661 AGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGTCGACGTGATGAATGTG
1 AGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* * *
36899726 AAAGTGTATATATATGTGGTAAAGCCGAATGGC
66 AAAGTGTATATATATGTGATAAGGCCTAATGGC
36899759 TAATGTGAAT
Statistics
Matches: 230, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
145 118 0.51
146 3 0.01
147 109 0.47
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (145 bp):
AGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTG
ATAAGGCCTAATGGC
Found at i:36899862 original size:37 final size:37
Alignment explanation
Indices: 36899821--36899893 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
36899811 TTTCGGGTGA
*
36899821 GACCCGATGACTACGTGTGGAGATTATGTCCGGGTAC
1 GACCCGATGACTACATGTGGAGATTATGTCCGGGTAC
36899858 GACCCGATGACTACATGTGGAGATTATGTCCGGGTA
1 GACCCGATGACTACATGTGGAGATTATGTCCGGGTA
36899894 AGACTTCGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (37 bp):
GACCCGATGACTACATGTGGAGATTATGTCCGGGTAC
Found at i:36902253 original size:50 final size:51
Alignment explanation
Indices: 36902139--36902258 Score: 145
Period size: 51 Copynumber: 2.4 Consensus size: 51
36902129 TGAGGTCGCA
** *
36902139 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACACGTACTCGATAACTTAGATCACG
* * ** *
36902190 TGTGTAGTTCTAAGTGCAGGCTACTACATGTA-TCAGAT-GGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACACGTACTC-GATAACTTAGATCACG
36902240 TGTGTAGTACTAAGTGCAG
1 TGTGTAGTACTAAGTGCAG
36902259 CGTGTGTAGT
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
50 28 0.47
51 31 0.53
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTACACGTACTCGATAACTTAGATCACG
Found at i:36902262 original size:21 final size:21
Alignment explanation
Indices: 36902238--36902279 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
36902228 GGTTAGGTCA
36902238 CGTGTGTAGTACTAAGTGCAG
1 CGTGTGTAGTACTAAGTGCAG
36902259 CGTGTGTAGTACTAAGTGCAG
1 CGTGTGTAGTACTAAGTGCAG
36902280 GCTACTACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (21 bp):
CGTGTGTAGTACTAAGTGCAG
Found at i:36920635 original size:79 final size:82
Alignment explanation
Indices: 36920495--36920679 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 82
36920485 TCGAATGATG
* * *
36920495 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
36920559 CGTGCGAGAT-AATA-AA
66 CGTGCGAG-TCAATATAA
* **
36920575 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
36920637 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
36920655 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36920680 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 2 0.02
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:36920659 original size:40 final size:40
Alignment explanation
Indices: 36920496--36920687 Score: 169
Period size: 40 Copynumber: 4.8 Consensus size: 40
36920486 CGAATGATGT
* * * *
36920496 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
* * * * *
36920536 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGAT-AATAAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TCACTAAAC
* *
36920576 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
* *
36920615 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
** *
36920655 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTC
36920688 GTTATATCCG
Statistics
Matches: 124, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
38 1 0.01
39 31 0.25
40 82 0.66
41 10 0.08
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:36920710 original size:79 final size:79
Alignment explanation
Indices: 36920495--36920712 Score: 176
Period size: 79 Copynumber: 2.7 Consensus size: 79
36920485 TCGAATGATG
* * * * ** *
36920495 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
36920558 TCGTGCGAGATAATAAA
63 TCGTGCGAGATAATAAA
* * * *
36920575 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
36920640 TGCGAG-TCACTATAA
66 TGCGAGAT-AATA-AA
** * ** * *
36920655 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
36920713 TACGTGATTC
Statistics
Matches: 113, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
78 1 0.01
79 68 0.60
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGATAATAAA
Found at i:36923191 original size:26 final size:26
Alignment explanation
Indices: 36923155--36923204 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
36923145 ATTAGAAAAG
36923155 TTAACTTGTATATAATTTGAGGACTA
1 TTAACTTGTATATAATTTGAGGACTA
*
36923181 TTAACTTGTATATAATTTGGGGAC
1 TTAACTTGTATATAATTTGAGGAC
36923205 CATAACCCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (26 bp):
TTAACTTGTATATAATTTGAGGACTA
Found at i:36929919 original size:46 final size:46
Alignment explanation
Indices: 36929866--36930230 Score: 150
Period size: 46 Copynumber: 7.7 Consensus size: 46
36929856 GTTTTTGTGT
*
36929866 GCCAGTGTAAGACATTTCTGGGACATGCATCGGCCACATT-ATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTGATGAGA
*
36929912 GCCAGTGTAAGACCATGTCTGGGACGTGGCATCGG--CATTGAGATGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT--GATGAGA
* * * *
36929960 GCTAATATAAAACATGTCTGGGACATGCATCGGCCTCGA--GATG-GAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-C-ATTGATGAG-A
* * * * * *
36930006 GTCAGTGTGAGATATGTCTGGGACATGCATCAGCTGCGA--GATG-TA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC--CCATTGATGAGA
* * * *
36930051 -TCAGTGTAAGACCATGTTTGGGACATGGGATCGGCACGGATATG-TGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-C-CAT-TGATGAGA
* * * * * *
36930100 GCTAGTGTAA-ACCATGTCTGGGACATGGCGTTGACCTCGATT-TTGATA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCC-C-ATTGATGAGA
* * * *
36930148 GTCAATGTAAGACCATGTTTGGGACATGGCATC-G-AC-TTGATGGATGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATTGAT-GA-GA
*
36930195 GCCAGTGTAAGACCATGTGTGGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
36930231 ATTATACCCT
Statistics
Matches: 244, Mismatches: 47, Indels: 53
0.71 0.14 0.15
Matches are distributed among these distances:
44 12 0.05
45 20 0.08
46 66 0.27
47 56 0.23
48 38 0.16
49 44 0.18
50 8 0.03
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTGATGAGA
Found at i:36930163 original size:49 final size:47
Alignment explanation
Indices: 36930055--36930228 Score: 138
Period size: 49 Copynumber: 3.6 Consensus size: 47
36930045 GATGTATCAG
* * * * * *
36930055 TGTAAGACCATGTTTGGGACATGGGATCGGCACGGATATGTGA-GAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACTC-G--ATG-GATGAGCCAA
* * * *
36930105 TGTAA-ACCATGTCTGGGACATGGCGTTGACCTCGATTTTGAT-AGTCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGA-CTCGA--TGGATGAGCCAA
* * *
36930153 TGTAAGACCATGTTTGGGACATGGCATCGACTTGATGGATGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACTCGATGGATGAGCCAA
*
36930200 TGTAAGACCATGTGTGGGACATGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
36930229 GCATTATACC
Statistics
Matches: 100, Mismatches: 18, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
46 4 0.04
47 33 0.33
48 14 0.14
49 42 0.42
50 7 0.07
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACTCGATGGATGAGCCAA
Found at i:36934104 original size:40 final size:39
Alignment explanation
Indices: 36934059--36934186 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
36934049 CGGAATATAA
*
36934059 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAATTGCCTTCGGGTCTTAGC
** *
36934099 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAATTGCCTTCGGGTCTTAGC
* * * *
36934139 CCGGATATAATTTC-CAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAA--TCACTGCACAATTGCCTTCGGGTCTTAGC
36934179 CCGGATAT
1 CCGGATAT
36934187 CATTCAATTT
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 71 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAATTGCCTTCGGGTCTTAGC
Found at i:36938440 original size:2 final size:2
Alignment explanation
Indices: 36938433--36938474 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
36938423 GGATCATCTC
36938433 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36938475 TACAATTATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36938503 original size:16 final size:15
Alignment explanation
Indices: 36938465--36938512 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
36938455 ATATATATAT
*
36938465 ATATATATATTACAA
1 ATATAAATATTACAA
*
36938480 TTAT-AATATTACATA
1 ATATAAATATTACA-A
*
36938495 ATATAAATATTATAA
1 ATATAAATATTACAA
36938510 ATA
1 ATA
36938513 ATTATAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 8 0.30
15 11 0.41
16 8 0.30
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (15 bp):
ATATAAATATTACAA
Found at i:36947969 original size:8 final size:8
Alignment explanation
Indices: 36947958--36947988 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
36947948 ATGACCAAAG
36947958 TGCCCTTA
1 TGCCCTTA
36947966 TGCCCTTA
1 TGCCCTTA
36947974 TGCCCTTA
1 TGCCCTTA
36947982 TGCCCTT
1 TGCCCTT
36947989 TCTTTAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.10, C:0.39, G:0.13, T:0.39
Consensus pattern (8 bp):
TGCCCTTA
Found at i:36955629 original size:25 final size:25
Alignment explanation
Indices: 36955595--36955671 Score: 145
Period size: 25 Copynumber: 3.1 Consensus size: 25
36955585 TGATTATGGG
*
36955595 AGTCTGCTAGCCAAGTTGCAAGCTA
1 AGTCTGCTAGCCAAGTTGCAAGTTA
36955620 AGTCTGCTAGCCAAGTTGCAAGTTA
1 AGTCTGCTAGCCAAGTTGCAAGTTA
36955645 AGTCTGCTAGCCAAGTTGCAAGTTA
1 AGTCTGCTAGCCAAGTTGCAAGTTA
36955670 AG
1 AG
36955672 CCGACTAAGA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 51 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.26
Consensus pattern (25 bp):
AGTCTGCTAGCCAAGTTGCAAGTTA
Found at i:36959571 original size:56 final size:56
Alignment explanation
Indices: 36959485--36959616 Score: 237
Period size: 56 Copynumber: 2.4 Consensus size: 56
36959475 CATGGCATCG
*
36959485 ATATATGTGTTCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCA
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCA
* *
36959541 ATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATTCCG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCA
36959597 ATATATGTGTGCGAGTAAGA
1 ATATATGTGTGCGAGTAAGA
36959617 TCCTGTCTGG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 73 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCA
Found at i:36959636 original size:56 final size:56
Alignment explanation
Indices: 36959485--36959649 Score: 217
Period size: 56 Copynumber: 2.9 Consensus size: 56
36959475 CATGGCATCG
* * * *
36959485 ATATATGTGTTCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCA
1 ATATATGTGTGCGAGTAAGACCATGTCTAAGACGTTGGCATCGATATGTGATTCCA
* * *
36959541 ATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATTCCG
1 ATATATGTGTGCGAGTAAGACCATGTCTAAGACGTTGGCATCGATATGTGATTCCA
**
36959597 ATATATGTGTGCGAGTAAGATCC-TGTCTGGGACAG-TGGCATCGATATGTGATT
1 ATATATGTGTGCGAGTAAGA-CCATGTCTAAGAC-GTTGGCATCGATATGTGATT
36959650 ACATGTAAGA
Statistics
Matches: 100, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
56 97 0.97
57 3 0.03
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCATGTCTAAGACGTTGGCATCGATATGTGATTCCA
Found at i:36963003 original size:15 final size:15
Alignment explanation
Indices: 36962983--36963014 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
36962973 TATTAAGGTT
36962983 TGATTAATGAGTATA
1 TGATTAATGAGTATA
36962998 TGATTAATGAGTATA
1 TGATTAATGAGTATA
36963013 TG
1 TG
36963015 TAAACAAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.22, T:0.41
Consensus pattern (15 bp):
TGATTAATGAGTATA
Found at i:36965876 original size:16 final size:17
Alignment explanation
Indices: 36965847--36965878 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
36965837 AAGGTCACTT
36965847 TCATAATGATCATGAAC
1 TCATAATGATCATGAAC
36965864 TCATAAT-ATCATGAA
1 TCATAATGATCATGAA
36965879 GCTAATGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (17 bp):
TCATAATGATCATGAAC
Found at i:36969594 original size:17 final size:17
Alignment explanation
Indices: 36969572--36969612 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
36969562 GCCACACGGG
36969572 CGTGTGGCCACCCATGT
1 CGTGTGGCCACCCATGT
*
36969589 CGTGTGGCCACCTATGT
1 CGTGTGGCCACCCATGT
36969606 CGTGTGG
1 CGTGTGG
36969613 TCACACACAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.10, C:0.29, G:0.34, T:0.27
Consensus pattern (17 bp):
CGTGTGGCCACCCATGT
Found at i:36970202 original size:13 final size:12
Alignment explanation
Indices: 36970183--36970221 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 12
36970173 AGGATTATGA
36970183 TTATCTGATCTG
1 TTATCTGATCTG
36970195 TATATCTGACTCTG
1 T-TATCTGA-TCTG
36970209 TTATCTGAATCTG
1 TTATCTG-ATCTG
36970222 AAATGGGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 1 0.04
13 17 0.71
14 6 0.25
ACGTcount: A:0.21, C:0.18, G:0.15, T:0.46
Consensus pattern (12 bp):
TTATCTGATCTG
Found at i:36973194 original size:57 final size:59
Alignment explanation
Indices: 36973071--36973219 Score: 153
Period size: 57 Copynumber: 2.5 Consensus size: 59
36973061 CCCCCCCCCC
* * * * *
36973071 AACTTGGCAGCTTTTTCCACTTTAGGGCCTGAACTTTTTTTTGGTCCATGTTAAGCCCTG
1 AACTTGGCA-ATTGTTCCACATTAGGGCCTGAACTTTTTTTTGGTCCAAGTTAAGCACTG
* * * *
36973131 AACTTGGTAATTGTTCCACATTGGGGCTTGAAC-TTTTTTT-GTCCAAGTTAATCACTG
1 AACTTGGCAATTGTTCCACATTAGGGCCTGAACTTTTTTTTGGTCCAAGTTAAGCACTG
*
36973188 AGCTTGGCAATTGTT-CACGTATT-GGGCCTGAA
1 AACTTGGCAATTGTTCCAC--ATTAGGGCCTGAA
36973220 ATTTAGGGTT
Statistics
Matches: 75, Mismatches: 12, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
56 3 0.04
57 35 0.47
58 10 0.13
59 19 0.25
60 8 0.11
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.38
Consensus pattern (59 bp):
AACTTGGCAATTGTTCCACATTAGGGCCTGAACTTTTTTTTGGTCCAAGTTAAGCACTG
Found at i:36982919 original size:48 final size:48
Alignment explanation
Indices: 36982847--36983150 Score: 283
Period size: 48 Copynumber: 6.3 Consensus size: 48
36982837 TATGTGTGCC
* *
36982847 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCATGACATGAGAGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCATGACATGAGAGCT
* * * * * *
36982895 AGTGTAAGACTATGTTTGGAACATGGCATCAGCAATGTCATGAGAGTT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCATGACATGAGAGCT
* * * * *
36982943 AGTGTAAGACCATGTCTAGGACATGGCATCGG-CATTGATATGTGCGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCA-TGACATGAGAGCT
* ** * *
36982991 AGTGTAAGACCATGTCTGGGACATAACATCGGCCA-CATTATGAGAG-T
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCATGA-CATGAGAGCT
* * *
36983038 CAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGACGAGAGCT
1 -AGTGTAAGACCATGTTTGGGACATGGCATCGGCCA-TGACATGAGAGCT
* * * * * * *
36983087 AGTGTAAAACCATGTCTGGGACATGGCATCGACCTTGACAAGTGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCATGACATGAGAGCT
*
36983135 AGTATAAGACCATGTT
1 AGTGTAAGACCATGTT
36983151 CCAAACATGG
Statistics
Matches: 208, Mismatches: 40, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
47 5 0.02
48 198 0.95
49 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCCATGACATGAGAGCT
Found at i:36983099 original size:144 final size:144
Alignment explanation
Indices: 36982834--36983149 Score: 384
Period size: 144 Copynumber: 2.2 Consensus size: 144
36982824 GACATTTGGG
* ** *
36982834 TGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCATGACATGAGAGCTAGTG
1 TGATATGTGAGCCAGTGTAAGACCATGTCTAGGACATAACATCGGCCATCACATGAGAGCTAGTG
* * * * * *
36982899 TAAGACTATGTTTGGAACATGGCATCAGCAATGTCATGAGAGTTAGTGTAAGACCATGTCTAGGA
66 TAAGACCATGTCTGGAACATGGCATCAGCAATGACACGAGAGCTAGTGTAAAACCATGTCTAGGA
*
36982964 CATGGCATCGGCAT
131 CATGGCATCGACAT
* * * *
36982978 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATAACATCGGCCA-CATTATGAGAG-TCAG
1 TGATATGTGAGCCAGTGTAAGACCATGTCTAGGACATAACATCGGCCATCA-CATGAGAGCT-AG
* * * * *
36983041 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAAACCATGTCTGG
64 TGTAAGACCATGTCTGGAACATGGCATCAGCAATGACACGAGAGCTAGTGTAAAACCATGTCTAG
*
36983106 GACATGGCATCGACCT
129 GACATGGCATCGACAT
* * *
36983122 TGACAAGTGAGCCAGTATAAGACCATGT
1 TGATATGTGAGCCAGTGTAAGACCATGT
36983150 TCCAAACATG
Statistics
Matches: 145, Mismatches: 25, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
143 2 0.01
144 143 0.99
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (144 bp):
TGATATGTGAGCCAGTGTAAGACCATGTCTAGGACATAACATCGGCCATCACATGAGAGCTAGTG
TAAGACCATGTCTGGAACATGGCATCAGCAATGACACGAGAGCTAGTGTAAAACCATGTCTAGGA
CATGGCATCGACAT
Found at i:36983117 original size:96 final size:96
Alignment explanation
Indices: 36982846--36983117 Score: 370
Period size: 96 Copynumber: 2.8 Consensus size: 96
36982836 ATATGTGTGC
*
36982846 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCCA-TGACATGAGAGCTAGTGTAAGACTATGT
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGG-CATTGACATGAGAGCTAGTGTAAGACCATGT
* * *
36982910 TTGGAACATGGCATCAGCAATGTCATGAGAGT
65 CTGGGACATGGCATCGGCAATGTCATGAGAGT
* * * *
36982942 TAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGCGCTAGTGTAAGACCATGTC
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATGTC
**
36983007 TGGGACATAACATCGGCCACAT-T-ATGAGAGT
66 TGGGACATGGCATCGG-CA-ATGTCATGAGAGT
* * * *
36983038 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAAACCATGTC
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATGTC
36983103 TGGGACATGGCATCG
66 TGGGACATGGCATCG
36983118 ACCTTGACAA
Statistics
Matches: 154, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
95 2 0.01
96 147 0.95
97 3 0.02
98 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (96 bp):
CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATGTC
TGGGACATGGCATCGGCAATGTCATGAGAGT
Found at i:36983165 original size:96 final size:95
Alignment explanation
Indices: 36982844--36983149 Score: 332
Period size: 96 Copynumber: 3.2 Consensus size: 95
36982834 TGATATGTGT
*
36982844 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCA-TGACATGAGAGCTAGTGTAAGACTAT
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGG-CATTGACATGAGAGCTAGTGTAAGACCAT
* * * * *
36982908 GTTTGGAACATGGCATC-AGCAATGTCATGAGA
65 GTCTGGGACATGGCATCGA-C-CTGACAAGAGA
** * * *
36982940 GTTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGCGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATG
** *
36983005 TCTGGGACATAACATCGGCC--ACATTATGAGA
66 TCTGGGACATGGCATCGACCTGACA--A-GAGA
* * * * *
36983036 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAAACCATG
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATG
*
36983101 TCTGGGACATGGCATCGACCTTGACAAGTGA
66 TCTGGGACATGGCATCGACC-TGACAAGAGA
*
36983132 GCCAGTATAAGACCATGT
1 GCCAGTGTAAGACCATGT
36983150 TCCAAACATG
Statistics
Matches: 175, Mismatches: 27, Indels: 16
0.80 0.12 0.07
Matches are distributed among these distances:
93 2 0.01
95 2 0.01
96 167 0.95
97 1 0.01
99 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (95 bp):
GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATG
TCTGGGACATGGCATCGACCTGACAAGAGA
Found at i:36984752 original size:6 final size:6
Alignment explanation
Indices: 36984734--36984805 Score: 76
Period size: 6 Copynumber: 11.8 Consensus size: 6
36984724 AAGAAACATT
*
36984734 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* *
36984783 ATCAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCAGA ATCAG
36984806 GTAACAGAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
5 3 0.05
6 48 0.86
7 4 0.07
8 1 0.02
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:36984783 original size:31 final size:31
Alignment explanation
Indices: 36984748--36984828 Score: 135
Period size: 31 Copynumber: 2.6 Consensus size: 31
36984738 GAACTAGAAT
*
36984748 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
36984779 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
*
36984810 CAGAATAAAAAATCAGAAT
1 CAGAAT-CAAAATCAGAAT
36984829 GTAAATGCAA
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
31 36 0.77
32 11 0.23
ACGTcount: A:0.51, C:0.15, G:0.16, T:0.19
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:36985008 original size:27 final size:26
Alignment explanation
Indices: 36984965--36985066 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
36984955 GCTCAGTTAT
* *
36984965 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
36984992 CAGATATTGTGGTAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
36985018 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
36985046 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
36985067 TTAACAGAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.77
28 8 0.12
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:36985253 original size:22 final size:22
Alignment explanation
Indices: 36985225--36985288 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
36985215 GCAAATACGT
*
36985225 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
36985247 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
36985269 TTGACACAAAGCCATAATCA
1 TTGGCACAAAGCCATAATCA
36985289 AAAGGCTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:36985773 original size:27 final size:27
Alignment explanation
Indices: 36985733--36985882 Score: 140
Period size: 27 Copynumber: 5.6 Consensus size: 27
36985723 TACCCCACAA
* * *
36985733 GGTATCTCAGTAATTCCACCCTACAGG
1 GGTATTTCAATAATTCTACCCTACAGG
36985760 GGTATTTCAATAATTCTACCCTACAGG
1 GGTATTTCAATAATTCTACCCTACAGG
* **
36985787 GGTA-CTCTGGTAATTCTACCCTACAGG
1 GGTATTTC-AATAATTCTACCCTACAGG
* * *
36985814 GGTATTTCGATAATTCTACCCCACATG
1 GGTATTTCAATAATTCTACCCTACAGG
**** * *
36985841 GGTATTTTGGGATTTCTACCCTACAAG
1 GGTATTTCAATAATTCTACCCTACAGG
*
36985868 GGTATTTCAGTAATT
1 GGTATTTCAATAATT
36985883 TTGTAAATCG
Statistics
Matches: 101, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.02
27 97 0.96
28 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTATTTCAATAATTCTACCCTACAGG
Found at i:36985811 original size:54 final size:54
Alignment explanation
Indices: 36985717--36985882 Score: 192
Period size: 54 Copynumber: 3.1 Consensus size: 54
36985707 GGCAAAATGG
* * * *
36985717 TAATTTTACCCCACA-AGGTA-TCTCAGTAATTCCACCCTACAGGGGTATTTCAA
1 TAATTCTACCCCACAGGGGTACTCT-GGTAATTCTACCCTACAGGGGTATTTCAA
* *
36985770 TAATTCTACCCTACAGGGGTACTCTGGTAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCCACAGGGGTACTCTGGTAATTCTACCCTACAGGGGTATTTCAA
* * * * * * *
36985824 TAATTCTACCCCACATGGGTATTTTGGGATTTCTACCCTACAAGGGTATTTCAG
1 TAATTCTACCCCACAGGGGTACTCTGGTAATTCTACCCTACAGGGGTATTTCAA
36985878 TAATT
1 TAATT
36985883 TTGTAAATCG
Statistics
Matches: 96, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
53 13 0.14
54 80 0.83
55 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (54 bp):
TAATTCTACCCCACAGGGGTACTCTGGTAATTCTACCCTACAGGGGTATTTCAA
Found at i:36985950 original size:27 final size:26
Alignment explanation
Indices: 36985920--36986286 Score: 367
Period size: 27 Copynumber: 13.7 Consensus size: 26
36985910 CTTTAAATCA
* * *
36985920 AGGGTAGTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAA-ACC
*** ** *
36985947 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACA-AACC
** * *
36985974 AGGGTATTTCAGTAATTTCACAAATC
1 AGGGTATTTTGGTAATTTTACAAACC
*
36986000 AGGGATATTTTGGTAATTTTACAAACT
1 AGGG-TATTTTGGTAATTTTACAAACC
*
36986027 AGGGGTATTTTGATAATTTTACAAACC
1 A-GGGTATTTTGGTAATTTTACAAACC
* **
36986054 AGGGTATTTTGGTAATTTTATAAATAA
1 AGGGTATTTTGGTAATTTTACAAA-CC
*
36986081 AGGGTATTTTAGTAA-TTTACAAACC
1 AGGGTATTTTGGTAATTTTACAAACC
* *
36986106 AGAGGTATTTTGGTAATTTTATAAACAA
1 AG-GGTATTTTGGTAATTTTACAAAC-C
*
36986134 AGGGTATTTTAGTAATTTTTACAAACC
1 AGGGTATTTTGGTAA-TTTTACAAACC
*
36986161 AGGGGTATTTTGGTAATTTTATAAACC
1 A-GGGTATTTTGGTAATTTTACAAACC
*
36986188 AAGGTATTTTGGTAATTTTACAAACC
1 AGGGTATTTTGGTAATTTTACAAACC
* *
36986214 AGGGGTATTTTGGTGATTTTAGAAACC
1 A-GGGTATTTTGGTAATTTTACAAACC
* *
36986241 AAGGGTATTTTAGTAATTTTACAAACT
1 -AGGGTATTTTGGTAATTTTACAAACC
36986268 AGGGGTATTTTGGTAATTT
1 A-GGGTATTTTGGTAATTT
36986287 GGTAAATAAA
Statistics
Matches: 284, Mismatches: 44, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
25 2 0.01
26 69 0.24
27 185 0.65
28 28 0.10
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACC
Found at i:36986017 original size:54 final size:53
Alignment explanation
Indices: 36985974--36986286 Score: 427
Period size: 53 Copynumber: 5.8 Consensus size: 53
36985964 TTACAGGTCG
* * * * *
36985974 AGGGTATTTCAGTAATTTCACAAATCAGGGATATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC-A
* *
36986028 GGGGTATTTT-GATAATTTTACAAACCA-GGGTATTTTGGTAATTTTATAAATAA
1 AGGGTATTTTAG-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAA-CA
*
36986081 AGGGTATTTTAGTAA-TTTACAAACCAGAGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC-A
36986134 AGGGTATTTTAGTAATTTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTAGTAA-TTTTACAAACCAGGGGTATTTTGGTAATTTTATAAA-CA
* * *
36986189 A-GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTAGAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAA-CA
*
36986242 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTT
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
36986287 GGTAAATAAA
Statistics
Matches: 233, Mismatches: 17, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
52 11 0.05
53 111 0.48
54 74 0.32
55 36 0.15
56 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (53 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACA
Found at i:36988242 original size:6 final size:6
Alignment explanation
Indices: 36988224--36988320 Score: 74
Period size: 6 Copynumber: 15.8 Consensus size: 6
36988214 AAGAAACATT
* * *
36988224 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAAA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
36988273 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
36988321 GTAACCGAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
5 4 0.06
6 61 0.85
7 5 0.07
8 2 0.03
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:36988331 original size:31 final size:31
Alignment explanation
Indices: 36988233--36988335 Score: 143
Period size: 31 Copynumber: 3.3 Consensus size: 31
36988223 TATCAGAACT
* * * *
36988233 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* *
36988264 AAAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
36988295 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
36988326 CGAATCAAAA
1 AGAATCAAAA
36988336 ATTAGAATGT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 65 1.00
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:36988522 original size:27 final size:26
Alignment explanation
Indices: 36988480--36988566 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 26
36988470 ACTCAGTTAT
* *
36988480 CAGATATTGTGACAGAGTCACTAGATA
1 CAGATATTGTGACAGAGCCACCAGA-A
36988507 CAGATATTGTCG-CAGAGCCACCAGAA
1 CAGATATTGT-GACAGAGCCACCAGAA
* * **
36988533 CAAATATTTGTGGCATTGCCACCAGAAA
1 CAGATA-TTGTGACAGAGCCACCAG-AA
36988561 CAGATA
1 CAGATA
36988567 ATATGCAAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
26 7 0.14
27 35 0.70
28 8 0.16
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAGAGCCACCAGAA
Found at i:36988767 original size:22 final size:22
Alignment explanation
Indices: 36988739--36988802 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
36988729 GCAAATACGT
*
36988739 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
36988761 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
36988783 TTGACACAAAGCCATAATCA
1 TTGGCACAAAGCCATAATCA
36988803 AAAGGCTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:36989259 original size:27 final size:27
Alignment explanation
Indices: 36989203--36989370 Score: 173
Period size: 27 Copynumber: 6.3 Consensus size: 27
36989193 GGGGAAAAAT
* * * *
36989203 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36989229 GGTAATTCCACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36989256 GGTAATTCTACCCTAAAAGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36989282 TGGTAATTCTACCTTACAGGGGTATTT-
1 -GGTAATTCTACCCTACAGGGGTATTTC
36989309 GAGTAATTCTACCCTACAGGGGTATTTC
1 G-GTAATTCTACCCTACAGGGGTATTTC
* * *
36989337 GAG-ATTTCTACTCTACAAGGGTATTTC
1 G-GTAATTCTACCCTACAGGGGTATTTC
*
36989364 GATAATT
1 GGTAATT
36989371 TTGTAAATCG
Statistics
Matches: 119, Mismatches: 17, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
26 18 0.15
27 96 0.81
28 5 0.04
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:36989384 original size:27 final size:27
Alignment explanation
Indices: 36989354--36989751 Score: 151
Period size: 27 Copynumber: 14.7 Consensus size: 27
36989344 CTACTCTACA
**
36989354 AGGGTATTTCGATAATTTTGTAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*** * * * *
36989381 AGGGTAAAACGGTAATTCTATAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* *
36989408 AGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGATAATTTTACAAATCG
* **
36989435 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
36989462 AGGGTATTTC-AGTAATTTCACAAAT-T
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
36989488 AGGAATATTTTTG-TAATTTTACAAA-CT
1 AGG-GTA-TTTCGATAATTTTACAAATCG
* *
36989515 AGGGGTATTTTGATAATTTTACAAA-CC
1 A-GGGTATTTCGATAATTTTACAAATCG
* * *
36989542 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTCGATAATTTTACAAATCG
* * * *
36989569 AGGGGTATTTTGGTAATTTTATAAA-CAA
1 A-GGGTATTTCGATAATTTTACAAATC-G
* * *
36989597 AAGGTATTT-TAGTAATTTTACAAA-CC
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
36989623 AGGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTCGATAATTTTACAAATCG
* * * *
36989650 AGGGGTATTTTGGTAATTTTATAAA-CAA
1 A-GGGTATTTCGATAATTTTACAAATC-G
* *
36989678 AGGGTATTT-TAGTAATTTTACAAA-CT
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
36989704 AGGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTCGATAATTTTACAAATCG
* *
36989731 AGGGGTATTTTGGTAATTTTA
1 A-GGGTATTTCGATAATTTTA
36989752 TAAACAAAGG
Statistics
Matches: 307, Mismatches: 47, Indels: 34
0.79 0.12 0.09
Matches are distributed among these distances:
26 14 0.05
27 286 0.93
28 7 0.02
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:36989548 original size:81 final size:81
Alignment explanation
Indices: 36989493--36989884 Score: 633
Period size: 81 Copynumber: 4.8 Consensus size: 81
36989483 AAATTAGGAA
* * * *
36989493 TATTTTTGTAATTTTACAAACTAGGGGTATTTT-GATAATTTTACAAACCAGGGGTATTTTGGTA
1 TATTTTGGTAATTTTATAAACAAAGGGTATTTTAG-TAATTTTACAAACCAGGGGTATTTTGGTA
*
36989557 ATTTTACAAACTAGGGG
65 ATTTTACAAACCAGGGG
*
36989574 TATTTTGGTAATTTTATAAACAAAAGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAA
1 TATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAA
36989639 TTTTACAAACCAGGGG
66 TTTTACAAACCAGGGG
*
36989655 TATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAA
1 TATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAA
36989720 TTTTACAAACCAGGGG
66 TTTTACAAACCAGGGG
* *
36989736 TATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAACTTTACAAACTAGGGGTATTTTGGTAA
1 TATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAA
** * *
36989801 TTTTGTAAACCAAGGA
66 TTTTACAAACCAGGGG
* *
36989817 TATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAA
1 TATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAA
36989882 TTT
66 TTT
36989885 GGTAAGCTAA
Statistics
Matches: 293, Mismatches: 17, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
81 292 1.00
82 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (81 bp):
TATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAA
TTTTACAAACCAGGGG
Found at i:36989756 original size:27 final size:27
Alignment explanation
Indices: 36989493--36989884 Score: 532
Period size: 27 Copynumber: 14.5 Consensus size: 27
36989483 AAATTAGGAA
* *
36989493 TATTTTTGTAATTTTACAAACTAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
36989520 TATTTTGATAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
36989547 TATTTTGGTAATTTTACAAACTAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* * **
36989574 TATTTTGGTAATTTTATAAACAAAAGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
36989601 TATTTTAGTAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
36989628 TATTTTGGTAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* * *
36989655 TATTTTGGTAATTTTATAAACAAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* *
36989682 TATTTTAGTAATTTTACAAACTAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
36989709 TATTTTGGTAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* * *
36989736 TATTTTGGTAATTTTATAAACAAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* * *
36989763 TATTTTAGTAACTTTACAAACTAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
** * *
36989790 TATTTTGGTAATTTTGTAAACCAAGGA
1 TATTTTGGTAATTTTACAAACCAGGGG
* * *
36989817 TATTTTGGTGATTTTATAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
36989844 TATTTTAGTAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
36989871 TATTTTGGTAATTT
1 TATTTTGGTAATTT
36989885 GGTAAGCTAA
Statistics
Matches: 318, Mismatches: 47, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 318 1.00
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
TATTTTGGTAATTTTACAAACCAGGGG
Found at i:36991841 original size:6 final size:6
Alignment explanation
Indices: 36991823--36991919 Score: 74
Period size: 6 Copynumber: 15.8 Consensus size: 6
36991813 AAGAAACATT
* *
36991823 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
36991872 ATTAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
36991920 GTAACCGAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
5 4 0.06
6 60 0.83
7 6 0.08
8 2 0.03
ACGTcount: A:0.46, C:0.14, G:0.19, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:36991868 original size:31 final size:31
Alignment explanation
Indices: 36991832--36991942 Score: 150
Period size: 31 Copynumber: 3.5 Consensus size: 31
36991822 TATCAGAACT
* * * *
36991832 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* *
36991863 AGAATCAGAATTAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
36991894 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
36991925 CGAATCTAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
36991943 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
31 61 0.85
32 11 0.15
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:36992121 original size:27 final size:26
Alignment explanation
Indices: 36992079--36992180 Score: 96
Period size: 27 Copynumber: 3.8 Consensus size: 26
36992069 GCTCAGTTAT
* * *
36992079 CAGATATTGTGACAGAGTCACTAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
36992106 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* **
36992132 CAAATATTTGTGGCATTGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* * *
36992160 CAGATAATATGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
36992181 TTAACAGAAT
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 6 0.10
27 49 0.79
28 7 0.11
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:36992990 original size:27 final size:28
Alignment explanation
Indices: 36992830--36992996 Score: 170
Period size: 27 Copynumber: 6.2 Consensus size: 28
36992820 GGGGCAAATG
* * * *
36992830 GTAATTTTACCCCACA-AGGTATCTCG-
1 GTAATTCTACCCTACAGGGGTATTTCGA
*
36992856 GTAATTCCACCCTACAGGGGTATTTC-A
1 GTAATTCTACCCTACAGGGGTATTTCGA
* * *
36992883 GTAATTCTACCCTAAAAGAGTA-TTCTG-
1 GTAATTCTACCCTACAGGGGTATTTC-GA
*
36992910 GTAATTCTACCTTACAGGGGTATTT-GA
1 GTAATTCTACCCTACAGGGGTATTTCGA
36992937 GTAATTCTACCCTACAGGGGTATTTCGA
1 GTAATTCTACCCTACAGGGGTATTTCGA
* *
36992965 G-ATTTCTACCCTACAAGGGTATTTCGA
1 GTAATTCTACCCTACAGGGGTATTTCGA
36992992 -TAATT
1 GTAATT
36992997 TTGTAAATCG
Statistics
Matches: 116, Mismatches: 17, Indels: 15
0.78 0.11 0.10
Matches are distributed among these distances:
26 17 0.15
27 94 0.81
28 5 0.04
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (28 bp):
GTAATTCTACCCTACAGGGGTATTTCGA
Found at i:36993010 original size:27 final size:27
Alignment explanation
Indices: 36992980--36993192 Score: 132
Period size: 27 Copynumber: 7.9 Consensus size: 27
36992970 CTACCCTACA
**
36992980 AGGGTATTTCGATAATTTTGTAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*** * * * *
36993007 AGGGTAAAACGGTAATTCTATAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* *
36993034 AGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGATAATTTTACAAATCG
* **
36993061 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
36993088 AGGGTATTTC-AGTAATTTCACAAAT-T
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
36993114 AGGGATATTTTTG-TAATTTTACAAA-CT
1 AGGG-TA-TTTCGATAATTTTACAAATCG
* * *
36993141 AGGGGTATTTTGATAATTTTACAAACCA
1 A-GGGTATTTCGATAATTTTACAAATCG
*
36993169 AGGGTACTTT-GGTAATTTTACAAA
1 AGGGTA-TTTCGATAATTTTACAAA
36993193 CCAGGGGTGT
Statistics
Matches: 150, Mismatches: 25, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
26 13 0.09
27 126 0.84
28 11 0.07
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:36995493 original size:40 final size:39
Alignment explanation
Indices: 36995448--36995615 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 39
36995438 CGGAATACAA
36995448 CCGGATATAACCACGTGCATGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCATGAATGCCTTCGGGTCTTAGC
* * *
36995488 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCATGAATGCCTTCGGGTCTTAGC
* * * * *
36995528 CCGGATGTAGCCGCTAGCA-CAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCATGAA-TGCCTTCGGGTCTTAGC
* * *
36995568 CCGGATATAATTTCCA--GCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAA---CCACTGCATGAATGCCTTCGGGTCTTAGC
36995608 CCGGATAT
1 CCGGATAT
36995616 CATTCAATTG
Statistics
Matches: 104, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
39 3 0.03
40 97 0.93
41 2 0.02
43 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCATGAATGCCTTCGGGTCTTAGC
Found at i:36998724 original size:48 final size:48
Alignment explanation
Indices: 36998662--36999278 Score: 1081
Period size: 48 Copynumber: 12.9 Consensus size: 48
36998652 TATATATGTG
*
36998662 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
36998710 TGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
36998758 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
36998806 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
36998854 TGTGGTAAAGCCGAATGGCTAGTGCGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
36998902 TGTGGTAAAGCCGAATGGCTAGTGCGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
36998950 TGTGGTAAAGCCGAATGGCTAGTGCGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
36998998 TGTGGTAAAGCCGAATGGCTAGTGCGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
36999046 TGTGGTAAAGCCGAATGGCTAGTGCGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
36999094 TGTGGTAAAGCCGAATGGCTAGTGCGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
36999142 TGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
36999190 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
36999238 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
36999279 GTGTGTATAT
Statistics
Matches: 559, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 559 1.00
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.29
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Done.