Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 146 of 325
Found at i:44714086 original size:49 final size:49
Alignment explanation
Indices: 44714026--44714147 Score: 190
Period size: 49 Copynumber: 2.5 Consensus size: 49
44714016 TACATATATG
*
44714026 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
* * * *
44714075 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
*
44714124 TGTGATAAGGCCTAATGGCTAATG
1 TGTGATAAGGCCTAATGGCCAATG
44714148 TAAAATATAT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 65 1.00
ACGTcount: A:0.30, C:0.10, G:0.32, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
Found at i:44714294 original size:37 final size:37
Alignment explanation
Indices: 44714244--44714328 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
44714234 GGAATATGTT
*
44714244 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
44714281 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
44714318 CCGGGTAAGAC
1 CCGGGTAAGAC
44714329 TTTTATAAGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:44718390 original size:16 final size:16
Alignment explanation
Indices: 44718369--44718401 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
44718359 ATAAAAAATG
44718369 AGACAAAAATTTTTCT
1 AGACAAAAATTTTTCT
44718385 AGACAAAAATTTTTCT
1 AGACAAAAATTTTTCT
44718401 A
1 A
44718402 TGTTACCCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.36
Consensus pattern (16 bp):
AGACAAAAATTTTTCT
Found at i:44720017 original size:46 final size:46
Alignment explanation
Indices: 44719964--44720056 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
44719954 TCAATAGCTA
44719964 ATCATTATCAAATATTTACATACAATTCTTTAGCCATATCATAAGG
1 ATCATTATCAAATATTTACATACAATTCTTTAGCCATATCATAAGG
44720010 ATCATTATCAAATATTTACATACAATTCTTTAGCCATATCATAAGG
1 ATCATTATCAAATATTTACATACAATTCTTTAGCCATATCATAAGG
44720056 A
1 A
44720057 CATACACACA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.37
Consensus pattern (46 bp):
ATCATTATCAAATATTTACATACAATTCTTTAGCCATATCATAAGG
Found at i:44720773 original size:55 final size:54
Alignment explanation
Indices: 44720650--44720850 Score: 192
Period size: 55 Copynumber: 3.7 Consensus size: 54
44720640 TTTCCTTTTC
* * * * * * *
44720650 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTG-GTATCCTTGCTTTAT-
1 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGAGGA-CCTTGCCTTATA
* *
44720703 GAACTCACCAATGCCATGCCTTGGCACGGTCTTACATG-GGACCTTTGTCTTATA
1 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGAGGACC-TTGCCTTATA
* * * ***
44720757 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGAGGACCTTGCCTTATA
* * *
44720812 GAACTTACCAATACCATGCTTTGGCATGGTCTTACATGA
1 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGA
44720851 TATCCTTATC
Statistics
Matches: 121, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
52 2 0.02
53 41 0.34
54 33 0.27
55 43 0.36
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGAGGACCTTGCCTTATA
Found at i:44720863 original size:109 final size:108
Alignment explanation
Indices: 44720661--44720863 Score: 282
Period size: 109 Copynumber: 1.9 Consensus size: 108
44720651 AACTTACCAT
* * * *
44720661 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCTTTATGAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATACCATGCCTTG
* *
44720726 GCACGGTCTTACATGGGACCTTTGTCTTATAGTAACTCATCAA
66 GCACGGTCTTACATGAGACCTTTATCTTATAGTAACTCATCAA
* * *
44720769 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTACCAATACCATGCTTT
1 TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAT-GAACTCACCAATACCATGCCTT
* *
44720834 GGCATGGTCTTACATGATATCC-TTATCTTA
65 GGCACGGTCTTACATGAGA-CCTTTATCTTA
44720864 CCAAATGCCA
Statistics
Matches: 82, Mismatches: 11, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
108 38 0.46
109 42 0.51
110 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.36
Consensus pattern (108 bp):
TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATACCATGCCTTG
GCACGGTCTTACATGAGACCTTTATCTTATAGTAACTCATCAA
Found at i:44720895 original size:47 final size:47
Alignment explanation
Indices: 44720836--44720957 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
44720826 CATGCTTTGG
* *
44720836 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
44720883 CATGATCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
44720930 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
44720958 GTGCCAATGC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:44721033 original size:47 final size:45
Alignment explanation
Indices: 44720980--44721084 Score: 120
Period size: 45 Copynumber: 2.3 Consensus size: 45
44720970 CATCTTGATG
* * * * *
44720980 TGGTCTTACATGGAGTTCTTAATCAATGCCGATGCCATGTCTTGACA
1 TGGTCTTACATGGAGTCCTT--GCAATACCAATGCCATGTCTTAACA
* **
44721027 TGGTCTTACATGGGGTCCTTGCCTTACCAATGCCATGTCTTAACA
1 TGGTCTTACATGGAGTCCTTGCAATACCAATGCCATGTCTTAACA
44721072 TGGTCTTACATGG
1 TGGTCTTACATGG
44721085 TACCCTTAAC
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
45 32 0.64
47 18 0.36
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (45 bp):
TGGTCTTACATGGAGTCCTTGCAATACCAATGCCATGTCTTAACA
Found at i:44730714 original size:20 final size:20
Alignment explanation
Indices: 44730689--44730731 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
44730679 TTTAAAATAT
44730689 AAATTTATTAATATATATAA
1 AAATTTATTAATATATATAA
*
44730709 AAATTTATTAATATATGTAA
1 AAATTTATTAATATATATAA
44730729 AAA
1 AAA
44730732 CAGCTTTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
AAATTTATTAATATATATAA
Found at i:44730832 original size:19 final size:19
Alignment explanation
Indices: 44730808--44730844 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
44730798 TCCAAACACT
44730808 AGAAAAGTAAATCATTTTC
1 AGAAAAGTAAATCATTTTC
44730827 AGAAAAGTAAATCATTTT
1 AGAAAAGTAAATCATTTT
44730845 TTAGAAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.49, C:0.08, G:0.11, T:0.32
Consensus pattern (19 bp):
AGAAAAGTAAATCATTTTC
Found at i:44730850 original size:20 final size:19
Alignment explanation
Indices: 44730807--44730851 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
44730797 ATCCAAACAC
44730807 TAGAAAAGTAAATCATTTT
1 TAGAAAAGTAAATCATTTT
*
44730826 CAGAAAAGTAAATCATTTTT
1 TAGAAAAGTAAATCA-TTTT
44730846 TAGAAA
1 TAGAAA
44730852 TCATTTTTCG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.49, C:0.07, G:0.11, T:0.33
Consensus pattern (19 bp):
TAGAAAAGTAAATCATTTT
Found at i:44732366 original size:54 final size:54
Alignment explanation
Indices: 44732234--44732437 Score: 293
Period size: 54 Copynumber: 3.8 Consensus size: 54
44732224 AACTTACCAT
*** * * *
44732234 TGCCATGTCTTGACATGGTCTTACATG-GGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGATTTCC-TTACCTTATAG-AATTTATCAA
44732289 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAATTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAATTTATCAA
44732343 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAATTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAATTTATCAA
* * * *
44732397 TGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTA
1 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTA
44732438 CCAAATGCCA
Statistics
Matches: 138, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
54 99 0.72
55 37 0.27
56 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (54 bp):
TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAATTTATCAA
Found at i:44732465 original size:47 final size:47
Alignment explanation
Indices: 44732410--44732531 Score: 210
Period size: 47 Copynumber: 2.6 Consensus size: 47
44732400 CATGCCTTGG
*
44732410 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
44732457 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
44732504 CATGGTCTTACAT-AGTATCCTTGTCTTA
1 CATGGTCTTACATGA-TATCCTTGTCTTA
44732532 GTGCCAATGC
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:44732753 original size:44 final size:44
Alignment explanation
Indices: 44732668--44732754 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 44
44732658 GTATCCTTAA
* * *
44732668 CCATCAGTTCCTCCTTAAATGCCATGTTATGAACATAGACTTTT
1 CCATCAATTCCTCCTTAAATGCCATGGTATCAACATAGACTTTT
* * *
44732712 CCATCAATTCTTCCTTAATTGCCATGGTA-CAACCATGGACTTT
1 CCATCAATTCCTCCTTAAATGCCATGGTATCAA-CATAGACTTT
44732755 GAGATATCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
43 2 0.06
44 34 0.94
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.36
Consensus pattern (44 bp):
CCATCAATTCCTCCTTAAATGCCATGGTATCAACATAGACTTTT
Found at i:44740000 original size:46 final size:46
Alignment explanation
Indices: 44739947--44740122 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
44739937 TGGTTGAGCA
*
44739947 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
44739993 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
44740040 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
44740086 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
44740123 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 6 0.05
45 3 0.03
46 65 0.59
47 28 0.25
48 3 0.03
50 5 0.05
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:44740103 original size:93 final size:93
Alignment explanation
Indices: 44739944--44740115 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
44739934 AGATGGTTGA
* *
44739944 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
44740009 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
44740037 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
44740102 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
44740116 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:44747553 original size:46 final size:46
Alignment explanation
Indices: 44747503--44747678 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
44747493 TGGTTGAGCA
44747503 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
44747549 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
44747594 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
44747642 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
44747679 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:44747659 original size:93 final size:93
Alignment explanation
Indices: 44747500--44747671 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
44747490 GGATGGTTGA
* *
44747500 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
44747565 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
44747593 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
44747658 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
44747672 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:44755993 original size:28 final size:28
Alignment explanation
Indices: 44755928--44755999 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
44755918 ATAGTGAATC
* *
44755928 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAGA-TATCAGCT
44755957 CGCACACTTAGTGCTATAGA-ATCAAGCT
1 CGCACACTTAGTGCTATAGATATC-AGCT
44755985 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
44756000 GTACAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.47
29 19 0.47
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGATATCAGCT
Found at i:44760870 original size:40 final size:40
Alignment explanation
Indices: 44760777--44760958 Score: 181
Period size: 39 Copynumber: 4.6 Consensus size: 40
44760767 AAATTGAATG
* * * * *
44760777 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
44760816 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
*
44760856 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
44760895 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
44760935 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
44760959 CTTGGTGCGG
Statistics
Matches: 120, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 64 0.53
40 56 0.47
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:44762664 original size:24 final size:24
Alignment explanation
Indices: 44762637--44762727 Score: 164
Period size: 24 Copynumber: 3.8 Consensus size: 24
44762627 CTTATTATGT
**
44762637 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
44762661 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
44762685 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
44762709 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
44762728 TATTTCCAGC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 65 1.00
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:44762752 original size:29 final size:29
Alignment explanation
Indices: 44762710--44762783 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
44762700 CATAGTAAAT
*
44762710 CGCACACATAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
44762739 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
44762768 CGCACGCTTAGTGCCA
1 CGCACACTTAGTGCCA
44762784 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:44766844 original size:29 final size:29
Alignment explanation
Indices: 44766802--44766994 Score: 368
Period size: 29 Copynumber: 6.7 Consensus size: 29
44766792 GCGAATGATT
44766802 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
44766831 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
44766860 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
44766889 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
44766918 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
44766947 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
44766976 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
44766995 TTTTTCAACA
Statistics
Matches: 162, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 162 1.00
ACGTcount: A:0.26, C:0.17, G:0.33, T:0.24
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:44770348 original size:49 final size:49
Alignment explanation
Indices: 44770292--44770554 Score: 456
Period size: 49 Copynumber: 5.4 Consensus size: 49
44770282 TACATATATG
* * * *
44770292 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
44770341 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
44770390 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
44770439 TGTGATGAGGCCTAATGG-CGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
44770487 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
44770536 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
44770555 TAATGTAAAA
Statistics
Matches: 207, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
48 47 0.23
49 160 0.77
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:44770505 original size:97 final size:97
Alignment explanation
Indices: 44770292--44770554 Score: 454
Period size: 97 Copynumber: 2.7 Consensus size: 97
44770282 TACATATATG
* * * *
44770292 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
44770357 GGCCGATGTGATGAATGTGAAAGTGTATGTATA
66 GG-CGATGTGATGAATGTGAAAGTGTATGTATA
* *
44770390 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
*
44770455 GGCGATGTGGTGAATGTGAAAGTGTATGTATA
66 GGCGATGTGATGAATGTGAAAGTGTATGTATA
44770487 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
44770552 GGC
66 GGC
44770555 TAATGTAAAA
Statistics
Matches: 156, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
97 95 0.61
98 61 0.39
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.30
Consensus pattern (97 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
GGCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:44770609 original size:146 final size:145
Alignment explanation
Indices: 44770287--44770610 Score: 418
Period size: 146 Copynumber: 2.2 Consensus size: 145
44770277 TGATATACAT
*
44770287 ATATGTGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGC
1 ATATGTG-G-TAAGGCCGAATGG-CAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGC
* *
44770352 CTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGG
63 CTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCAATGT-G
** * *
44770417 TGAATGTGAAAGTGTATGT
127 AAAATATGAAAGTGTATGC
* * * * *
44770436 ATATGTGATGAGGCCTAATGGCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTA
1 ATATGTGGTAAGGCCGAATGGCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTA
* *
44770501 ATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCTAATGT-AAAA
66 ATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCAATGTGAAAA
**
44770565 TAT-ATGTGTGATATGC
131 TATGA-AAGTG-TATGC
*
44770581 ATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATATGTGGTAAGGCCGAATGGC-AATGTGA
44770611 ATGTTGTAAC
Statistics
Matches: 150, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
143 1 0.01
144 7 0.05
145 22 0.15
146 102 0.68
147 11 0.07
149 7 0.05
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.30
Consensus pattern (145 bp):
ATATGTGGTAAGGCCGAATGGCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTA
ATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCAATGTGAAAA
TATGAAAGTGTATGC
Found at i:44770708 original size:37 final size:37
Alignment explanation
Indices: 44770656--44770777 Score: 217
Period size: 37 Copynumber: 3.3 Consensus size: 37
44770646 GGAATATGTT
* *
44770656 CCGGGTGAGATCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
44770693 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
44770730 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
44770767 CCGGGTAAGAC
1 CCGGGTAAGAC
44770778 TTCTTTTATA
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 82 1.00
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.22
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:44778034 original size:54 final size:54
Alignment explanation
Indices: 44777970--44778079 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
44777960 AATGAGTATG
*
44777970 TGGTTGCTATGCAAATTATCTATAAATATGATTGTATGTATTGAGATGTATGCA
1 TGGTTGCTATGCAAATTATCTATAAATATGATTGGATGTATTGAGATGTATGCA
44778024 TGGTTGCTATGCAAATTATCTATAAATATGATTGGATGTATTGAGATGTATGCA
1 TGGTTGCTATGCAAATTATCTATAAATATGATTGGATGTATTGAGATGTATGCA
44778078 TG
1 TG
44778080 AACATGTATG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (54 bp):
TGGTTGCTATGCAAATTATCTATAAATATGATTGGATGTATTGAGATGTATGCA
Found at i:44780020 original size:25 final size:25
Alignment explanation
Indices: 44779986--44780035 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
44779976 TTGAAATTTA
44779986 CCACTTTTAGTTCAGTGGCTGGTTT
1 CCACTTTTAGTTCAGTGGCTGGTTT
44780011 CCACTTTTAGTTCAGTGGCTGGTTT
1 CCACTTTTAGTTCAGTGGCTGGTTT
44780036 ATACTTGGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.12, C:0.20, G:0.24, T:0.44
Consensus pattern (25 bp):
CCACTTTTAGTTCAGTGGCTGGTTT
Found at i:44780041 original size:25 final size:25
Alignment explanation
Indices: 44779982--44780041 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
44779972 TAAATTGAAA
44779982 TTTACCACTTTTAGTTCAGTGGCTGG
1 TTTA-CACTTTTAGTTCAGTGGCTGG
*
44780008 TTTCCACTTTTAGTTCAGTGGCTGG
1 TTTACACTTTTAGTTCAGTGGCTGG
*
44780033 TTTATACTT
1 TTTACACTT
44780042 GGCTTTAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
25 28 0.90
26 3 0.10
ACGTcount: A:0.15, C:0.18, G:0.20, T:0.47
Consensus pattern (25 bp):
TTTACACTTTTAGTTCAGTGGCTGG
Found at i:44785666 original size:39 final size:39
Alignment explanation
Indices: 44785582--44785734 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
44785572 TATGGTAACC
** * *
44785582 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
44785622 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
44785661 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
44785700 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
44785735 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:44785707 original size:78 final size:79
Alignment explanation
Indices: 44785551--44785733 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
44785541 TCGTTCAAAC
* * **
44785551 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
44785616 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
44785631 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
44785695 CAATTTGCACAATT
66 CAATTTGCACAATT
44785709 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
44785734 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:44793683 original size:39 final size:39
Alignment explanation
Indices: 44793599--44793751 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
44793589 TATGGTAACC
** * *
44793599 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
44793639 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
44793678 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
44793717 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
44793752 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:44793724 original size:78 final size:79
Alignment explanation
Indices: 44793568--44793750 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
44793558 TCGTTCAAAC
* * **
44793568 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
44793633 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
44793648 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
44793712 CAATTTGCACAATT
66 CAATTTGCACAATT
44793726 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
44793751 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:44795777 original size:31 final size:31
Alignment explanation
Indices: 44795742--44795803 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
44795732 TTCAATCATA
44795742 ATTTCATATTTACTTATGTCCTGGTCAAGTT
1 ATTTCATATTTACTTATGTCCTGGTCAAGTT
*
44795773 ATTTCATATTTACTTATGTTCTGGTCAAGTT
1 ATTTCATATTTACTTATGTCCTGGTCAAGTT
44795804 GTTTTCTTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.15, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTTCATATTTACTTATGTCCTGGTCAAGTT
Found at i:44799150 original size:28 final size:27
Alignment explanation
Indices: 44799117--44799169 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
44799107 TTAGAATACT
*
44799117 TTAGTTTACTAAAATTACCGAAATACGC
1 TTAGTTT-CTAAAAATACCGAAATACGC
* *
44799145 TTAGTTTGTAAAAATACTGAAATAC
1 TTAGTTTCTAAAAATACCGAAATAC
44799170 CCTCGATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACCGAAATACGC
Found at i:44799156 original size:27 final size:27
Alignment explanation
Indices: 44799126--44799224 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
44799116 TTTAGTTTAC
44799126 TAAAATTACCGAAATACGCTTAG-TTTG
1 TAAAATTACCGAAATAC-CTTAGATTTG
* * * *
44799153 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTAGATTTG
* * *
44799180 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTAGATTTG
44799207 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
44799225 CCCGATTTAC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.10
27 56 0.90
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTAGATTTG
Found at i:44799225 original size:54 final size:54
Alignment explanation
Indices: 44799126--44799232 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
44799116 TTTAGTTTAC
* * *
44799126 TAAAATTACCGAAATACGCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACGCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
44799180 TAAAATTACTGAAATAC-CTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACGCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
44799233 ACAGAATTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 7 0.16
54 38 0.84
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACGCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:44799313 original size:37 final size:37
Alignment explanation
Indices: 44799272--44799343 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
44799262 ATAATTACCA
* *
44799272 TTTTACCCCCGATTTACATAATGACCATTTTACCCCG
1 TTTTACCCCCGACTTACAGAATGACCATTTTACCCCG
* * *
44799309 TTTTACCCTCGACTTATAGAATTACCATTTTACCC
1 TTTTACCCCCGACTTACAGAATGACCATTTTACCC
44799344 TTAATTTACA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.25, C:0.31, G:0.07, T:0.38
Consensus pattern (37 bp):
TTTTACCCCCGACTTACAGAATGACCATTTTACCCCG
Found at i:44799314 original size:26 final size:27
Alignment explanation
Indices: 44799221--44799307 Score: 156
Period size: 27 Copynumber: 3.2 Consensus size: 27
44799211 ATTACCAAAG
*
44799221 TACCCCCGATTTACAGAATTACCATTT
1 TACCCCCGATTTACATAATTACCATTT
44799248 TACCCCCGATTTACATAATTACCATTT
1 TACCCCCGATTTACATAATTACCATTT
*
44799275 TACCCCCGATTTACATAATGACCATTT
1 TACCCCCGATTTACATAATTACCATTT
44799302 TACCCC
1 TACCCC
44799308 GTTTTACCCT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.29, C:0.32, G:0.06, T:0.33
Consensus pattern (27 bp):
TACCCCCGATTTACATAATTACCATTT
Found at i:44799341 original size:27 final size:27
Alignment explanation
Indices: 44799309--44799444 Score: 146
Period size: 27 Copynumber: 5.0 Consensus size: 27
44799299 TTTTACCCCG
* * *
44799309 TTTTACCCTCGACTTATAGAATTACCA
1 TTTTACCCTCGATTTACAGAATTACTA
** * *
44799336 TTTTACCCTTAATTTACAGAATTATTTT
1 TTTTACCCTCGATTTACAGAATTA-CTA
* * *
44799364 TTTTACCATCGATTTATAGAATTACTG
1 TTTTACCCTCGATTTACAGAATTACTA
*
44799391 TTTTACCCTTGATTTACAGAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
* *
44799418 TTTTACCCTTGATTTACAAAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
44799445 AAATACCCTT
Statistics
Matches: 90, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
27 70 0.78
28 20 0.22
ACGTcount: A:0.30, C:0.18, G:0.07, T:0.45
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAGAATTACTA
Found at i:44799370 original size:55 final size:55
Alignment explanation
Indices: 44799309--44799414 Score: 167
Period size: 55 Copynumber: 1.9 Consensus size: 55
44799299 TTTTACCCCG
*
44799309 TTTTACCCTCGACTTATAGAATTACCATTTTACCCTTAATTTACAGAATTATTTT
1 TTTTACCATCGACTTATAGAATTACCATTTTACCCTTAATTTACAGAATTATTTT
* ** *
44799364 TTTTACCATCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTA
1 TTTTACCATCGACTTATAGAATTACCATTTTACCCTTAATTTACAGAATTA
44799415 CTATTTTACC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.29, C:0.18, G:0.08, T:0.45
Consensus pattern (55 bp):
TTTTACCATCGACTTATAGAATTACCATTTTACCCTTAATTTACAGAATTATTTT
Found at i:44799451 original size:27 final size:27
Alignment explanation
Indices: 44799394--44799642 Score: 146
Period size: 27 Copynumber: 9.1 Consensus size: 27
44799384 ATTACTGTTT
* * ***
44799394 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACCAAAA
*
44799421 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
** **
44799448 TACCCTTGGCTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* * **
44799475 TGCCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACCAAAA
* *** *
44799502 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTTGATTTACAAAATTACCAAAA
** **
44799529 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* **
44799556 TACCCCTGATTTACAATGTTA-CAGAAA
1 TACCCTTGATTTACAAAATTACCA-AAA
*
44799583 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACCA-AAA
* * *
44799612 TACCATTGGTTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
44799639 TACC
1 TACC
44799643 TTTGGTTTGT
Statistics
Matches: 178, Mismatches: 36, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
26 2 0.01
27 150 0.84
28 8 0.04
29 18 0.10
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACCAAAA
Found at i:44799493 original size:54 final size:54
Alignment explanation
Indices: 44799435--44799560 Score: 182
Period size: 54 Copynumber: 2.3 Consensus size: 54
44799425 CTTGATTTAC
* * *
44799435 AAAATTACTAAAATACCCTTGGCTTGTAAAATTACCAAAATGCCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAATACCCTC-AATTTGT
* * *
44799489 AAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAATACCCTCAATTTGT
44799543 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
44799561 CTGATTTACA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 64 0.98
55 1 0.02
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAATACCCTCAATTTGT
Found at i:44799647 original size:27 final size:27
Alignment explanation
Indices: 44799394--44799673 Score: 143
Period size: 27 Copynumber: 10.3 Consensus size: 27
44799384 ATTACTGTTT
* * * ***
44799394 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTTGGTTTACAAAATTACCAAAA
* *
44799421 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* **
44799448 TACCCTTGGCTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * * **
44799475 TGCCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
*** *
44799502 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
*** **
44799529 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * **
44799556 TACCCCTGATTTACAATGTTA-CAGAAA
1 TACCCTTGGTTTACAAAATTACCA-AAA
* *
44799583 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAC--AAAATTACCA-AAA
* *
44799612 TACCATTGGTTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* *** *
44799639 TACCTTTGGTTTGTTAATTTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
*
44799666 CACCCTTG
1 TACCCTTG
44799674 TAGGATGAAA
Statistics
Matches: 202, Mismatches: 45, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
26 2 0.01
27 174 0.86
28 8 0.04
29 18 0.09
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACCAAAA
Found at i:44799768 original size:27 final size:27
Alignment explanation
Indices: 44799691--44799768 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
44799681 AAATGACTAA
* * *
44799691 AATACCCCTAT-TAGGTAAAAAGATCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
44799718 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
44799745 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
44799769 GAATATGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 1 0.02
27 39 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:44800958 original size:25 final size:24
Alignment explanation
Indices: 44800925--44800972 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
44800915 TTATAACATG
* * *
44800925 AAAATGACCGTTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
44800949 AAAAGTGACCATTATACCCCTAGG
1 AAAA-TGACCATTATACCCCTAGG
44800973 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:44801023 original size:9 final size:9
Alignment explanation
Indices: 44801011--44801067 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
44801001 TTTGATAAAC
44801011 ATGATATGT
1 ATGATATGT
*
44801020 ATGATATGCAC
1 ATGATATG--T
*
44801031 ATGACATGT
1 ATGATATGT
*
44801040 ATGATATGCAC
1 ATGATATG--T
44801051 ATGATATGT
1 ATGATATGT
44801060 ATGATATG
1 ATGATATG
44801068 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:44801034 original size:20 final size:20
Alignment explanation
Indices: 44801009--44801079 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
44800999 ATTTTGATAA
44801009 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
44801029 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
44801049 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
44801069 ACATGAGATGT
1 ACATGATATGT
44801080 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:44801056 original size:11 final size:11
Alignment explanation
Indices: 44801020--44801074 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
44801010 CATGATATGT
44801020 ATGATATGCAC
1 ATGATATGCAC
* *
44801031 ATGACATG--T
1 ATGATATGCAC
44801040 ATGATATGCAC
1 ATGATATGCAC
*
44801051 ATGATATG--T
1 ATGATATGCAC
44801060 ATGATATGCAC
1 ATGATATGCAC
44801071 ATGA
1 ATGA
44801075 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:44801212 original size:25 final size:24
Alignment explanation
Indices: 44801125--44801245 Score: 183
Period size: 24 Copynumber: 5.0 Consensus size: 24
44801115 GAGGAAGTGC
44801125 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
44801149 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
44801173 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
44801197 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
44801222 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
44801246 ATGATAAAGC
Statistics
Matches: 91, Mismatches: 1, Indels: 9
0.90 0.01 0.09
Matches are distributed among these distances:
23 6 0.07
24 54 0.59
25 21 0.23
26 10 0.11
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:44801491 original size:30 final size:31
Alignment explanation
Indices: 44801438--44801500 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
44801428 CGTTTACAGT
44801438 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
44801469 AAAGGCTTCGG-CCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
44801499 AA
1 AA
44801501 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 18 0.62
31 11 0.38
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:44807727 original size:31 final size:31
Alignment explanation
Indices: 44807689--44807763 Score: 141
Period size: 31 Copynumber: 2.4 Consensus size: 31
44807679 ACGGTTACTA
44807689 GGCCGAAGCCTTTTCATAAATCATATCACTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
*
44807720 GGCCGAAGCCTTTTCATAAATCATATCATTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
44807751 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
44807764 ACTGTAAATG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTG
Found at i:44808079 original size:26 final size:26
Alignment explanation
Indices: 44808009--44808137 Score: 201
Period size: 26 Copynumber: 5.1 Consensus size: 26
44807999 GCCTAGCCTC
44808009 TTTAAT-AACTGGGGCA-AAGCCCTT
1 TTTAATAAACTGGGGCATAAGCCCTT
*
44808033 TTTAGTAAACTGGGGCA-AAGCCCTT
1 TTTAATAAACTGGGGCATAAGCCCTT
44808058 TTTAATAAACTGGGGCATAAGCCCTT
1 TTTAATAAACTGGGGCATAAGCCCTT
**
44808084 TTCGATAAACTGGGGCATAAGCCCTT
1 TTTAATAAACTGGGGCATAAGCCCTT
*
44808110 TTCAATAAACTGGGGCATAAGCCCTT
1 TTTAATAAACTGGGGCATAAGCCCTT
44808136 TT
1 TT
44808138 GCACTTCCTC
Statistics
Matches: 98, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
24 5 0.05
25 34 0.35
26 59 0.60
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
TTTAATAAACTGGGGCATAAGCCCTT
Found at i:44808961 original size:27 final size:27
Alignment explanation
Indices: 44808931--44808995 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
44808921 GGGCATATTC
44808931 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * * *
44808958 GTCACTTTACCCTACAGGGGCTTTATG
1 GTCATTTTACCATACAAGGGCTTTACG
*
44808985 GTCTTTTTACC
1 GTCATTTTACC
44808996 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:44809118 original size:29 final size:28
Alignment explanation
Indices: 44809048--44809144 Score: 112
Period size: 29 Copynumber: 3.5 Consensus size: 28
44809038 GTAAATCTAC
44809048 AAACCAAGGGTATTTC-ATAA-TTTTGT
1 AAACCAAGGGTATTTCTATAATTTTTGT
*
44809074 AAACCAATGGTATTTCTATAATTTTTAG-
1 AAACCAAGGGTATTTCTATAATTTTT-GT
*
44809102 AAAGTCAAGGGTATTTCTATAA-TTTTGT
1 AAA-CCAAGGGTATTTCTATAATTTTTGT
* *
44809130 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
44809145 TGGTAATTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
26 15 0.24
27 16 0.26
28 14 0.23
29 17 0.27
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.40
Consensus pattern (28 bp):
AAACCAAGGGTATTTCTATAATTTTTGT
Found at i:44809151 original size:27 final size:26
Alignment explanation
Indices: 44809138--44809259 Score: 136
Period size: 27 Copynumber: 4.6 Consensus size: 26
44809128 GTAAATCAGG
**
44809138 GGTATTTTGGTAATTTTACAAATTGA
1 GGTATTTTGGTAATTTTACAAACAGA
* * * * *
44809164 CGCATTTCGGTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAA-CAGA
* *
44809191 GGTATTTTGGAAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAAC-AGA
44809218 GGTATTTTGGTAATTTTACAAACTAGA
1 GGTATTTTGGTAATTTTACAAAC-AGA
44809245 GGTATTTTGGTAATT
1 GGTATTTTGGTAATT
44809260 CTATCCTATA
Statistics
Matches: 79, Mismatches: 15, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
26 19 0.24
27 60 0.76
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACAGA
Found at i:44809251 original size:54 final size:53
Alignment explanation
Indices: 44809138--44809259 Score: 154
Period size: 54 Copynumber: 2.3 Consensus size: 53
44809128 GTAAATCAGG
* *
44809138 GGTATTTTGGTAATTTTACAAATTGACGCATTTCGGTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAATAGACGCATTTCGGTAATTTCACAAACCAGA
* ** * * * *
44809191 GGTATTTTGGAAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGA
1 GGTATTTTGGTAATTTTACAAA-TAGACGCATTTCGGTAATTTCACAAACCAGA
44809245 GGTATTTTGGTAATT
1 GGTATTTTGGTAATT
44809260 CTATCCTATA
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
53 21 0.36
54 37 0.64
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (53 bp):
GGTATTTTGGTAATTTTACAAATAGACGCATTTCGGTAATTTCACAAACCAGA
Found at i:44809275 original size:54 final size:54
Alignment explanation
Indices: 44809167--44809292 Score: 146
Period size: 54 Copynumber: 2.3 Consensus size: 54
44809157 AAATTGACGC
* * *
44809167 ATTTCGGTAATTTCACAAACCAGTGGTATTTTGGAAATTTTACAAACTAGGGGT
1 ATTTCGGTAATTTCACAAACCAGAGGTATTTTGGAAATTCTACAAACTAAGGGT
* * * * **
44809221 ATTTTGGTAATTTTACAAACTAGAGGTATTTTGGTAATTCTATCCTA-TAAGGGT
1 ATTTCGGTAATTTCACAAACCAGAGGTATTTTGGAAATTCTA-CAAACTAAGGGT
*
44809275 ATTTCAGTAATTTCACAA
1 ATTTCGGTAATTTCACAA
44809293 TCGGGTAAAC
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 57 0.97
55 2 0.03
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (54 bp):
ATTTCGGTAATTTCACAAACCAGAGGTATTTTGGAAATTCTACAAACTAAGGGT
Found at i:44809376 original size:27 final size:26
Alignment explanation
Indices: 44809295--44809482 Score: 243
Period size: 27 Copynumber: 7.1 Consensus size: 26
44809285 TTTCACAATC
* * *
44809295 GGGT-AAACGGTAATTTTTAAATTGA
1 GGGTAAAATGGTAATTTATAAATCGA
*
44809320 GGGTAAAATGGTAATTTGTAAATCGA
1 GGGTAAAATGGTAATTTATAAATCGA
*
44809346 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATT-TATAAATCGA
44809373 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATT-TATAAATCGA
* *
44809400 GGGTAAAATGATAATTTTGTAAATCGA
1 GGGTAAAATGGTAA-TTTATAAATCGA
* *
44809427 GGGTGAAACGGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATT-TATAAATCGA
*
44809454 GGGTAAAATGGTAATTTACAAATCGA
1 GGGTAAAATGGTAATTTATAAATCGA
44809480 GGG
1 GGG
44809483 CATTTCAATA
Statistics
Matches: 144, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
25 4 0.03
26 47 0.33
27 91 0.63
28 2 0.01
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (26 bp):
GGGTAAAATGGTAATTTATAAATCGA
Found at i:44809446 original size:81 final size:79
Alignment explanation
Indices: 44809295--44809482 Score: 297
Period size: 81 Copynumber: 2.4 Consensus size: 79
44809285 TTTCACAATC
* * * *
44809295 GGGT-AAACGGTAATTTTTAAATTGAGGGTAAAATGGTAATTTGTAAATCGAGGGTAAAACGGTA
1 GGGTAAAATGGTAATTTATAAATCGAGGGTAAAATGATAATTTGTAAATCGAGGGTAAAACGGTA
44809359 ATTCTATAAATCGA
66 ATTCTATAAATCGA
*
44809373 GGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTGAAACGG
1 GGGTAAAATGGTAATT-TATAAATCGAGGGTAAAATGATAA-TTTGTAAATCGAGGGTAAAACGG
44809438 TAATTCTATAAATCGA
64 TAATTCTATAAATCGA
*
44809454 GGGTAAAATGGTAATTTACAAATCGAGGG
1 GGGTAAAATGGTAATTTATAAATCGAGGG
44809483 CATTTCAATA
Statistics
Matches: 101, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
78 4 0.04
79 10 0.10
80 33 0.33
81 54 0.53
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (79 bp):
GGGTAAAATGGTAATTTATAAATCGAGGGTAAAATGATAATTTGTAAATCGAGGGTAAAACGGTA
ATTCTATAAATCGA
Found at i:44810908 original size:45 final size:41
Alignment explanation
Indices: 44810839--44810955 Score: 110
Period size: 41 Copynumber: 2.7 Consensus size: 41
44810829 GTTTTCGTGC
* ** *
44810839 AAGACCACGTCTGGGATGTTGGCATCGATATATGTGGTTATGTGA
1 AAGACCATGTCTGGGA-CATGGCATCGATAT-T-TGATT-TGTGA
*
44810884 AAGACCATGTCTGGGACATCGGCATCG-TATTTGATTTGTGT
1 AAGACCATGTCTGGGACAT-GGCATCGATATTTGATTTGTGA
* *
44810925 AAGACCCTGTCTAGGACAGTGGCATCGATAT
1 AAGACCATGTCTGGGACA-TGGCATCGATAT
44810956 GAGATAGCAT
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
41 27 0.44
42 8 0.13
43 1 0.02
44 4 0.06
45 22 0.35
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (41 bp):
AAGACCATGTCTGGGACATGGCATCGATATTTGATTTGTGA
Found at i:44811968 original size:34 final size:34
Alignment explanation
Indices: 44811925--44812007 Score: 130
Period size: 34 Copynumber: 2.4 Consensus size: 34
44811915 GTACTTGCAC
*
44811925 ATATATATATTTATGCACATGATGTGTTGGTATG
1 ATATATATATTTATGCACATGATGTATTGGTATG
* *
44811959 ATATATATATTTATTCCCATGATGTATTGGTATG
1 ATATATATATTTATGCACATGATGTATTGGTATG
44811993 ATATATATATATTAT
1 ATATATATAT-TTAT
44812008 CTCAAGGTGT
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
34 41 0.91
35 4 0.09
ACGTcount: A:0.33, C:0.06, G:0.14, T:0.47
Consensus pattern (34 bp):
ATATATATATTTATGCACATGATGTATTGGTATG
Found at i:44825875 original size:27 final size:26
Alignment explanation
Indices: 44825796--44825894 Score: 83
Period size: 27 Copynumber: 3.7 Consensus size: 26
44825786 CTAATTTGTG
* **
44825796 AAATTACCGAAATACCCCAACT-TGTA
1 AAATTATCGAAATACCCC-TGTGTGTA
* *
44825822 AAATTATTGAAATACCACCTGTTTGTA
1 AAATTATCGAAATACC-CCTGTGTGTA
* *
44825849 AAACTATCGAAATACCCTTGTAGTGTA
1 AAATTATCGAAATACCCCTGT-GTGTA
* *
44825876 AAATTACCAAAATACCCCT
1 AAATTATCGAAATACCCCT
44825895 ATACGATAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
26 19 0.33
27 39 0.67
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.28
Consensus pattern (26 bp):
AAATTATCGAAATACCCCTGTGTGTA
Found at i:44826489 original size:32 final size:32
Alignment explanation
Indices: 44826421--44826489 Score: 75
Period size: 32 Copynumber: 2.2 Consensus size: 32
44826411 CGTCGCTGAT
* * * * *
44826421 GGCTATGTGCCAAACATAATATAGTTACCGAT
1 GGCTTTGTGCCAAACATAATACAGCTACCAAA
* *
44826453 GGCTTTGTGCCAAATATAATACAGCTACTAAA
1 GGCTTTGTGCCAAACATAATACAGCTACCAAA
44826485 GGCTT
1 GGCTT
44826490 AGAGTCACAT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (32 bp):
GGCTTTGTGCCAAACATAATACAGCTACCAAA
Found at i:44833525 original size:27 final size:27
Alignment explanation
Indices: 44833502--44833558 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
44833492 ATCGAAATGC
44833502 CCCT-GACTTGTAAAATTACTGAAATA
1 CCCTCGACTTGTAAAATTACTGAAATA
* * *
44833528 CCCTCGATTTATAAATTTACTGAAATA
1 CCCTCGACTTGTAAAATTACTGAAATA
44833555 CCCT
1 CCCT
44833559 TGTAGTGTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 4 0.15
27 23 0.85
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (27 bp):
CCCTCGACTTGTAAAATTACTGAAATA
Found at i:44833569 original size:27 final size:27
Alignment explanation
Indices: 44833510--44833598 Score: 94
Period size: 27 Copynumber: 3.3 Consensus size: 27
44833500 GCCCCTGACT
*
44833510 TGTAAAATTACTGAAATACCCTCG-A-
1 TGTAAAATTACTGAAATACCCTTGTAG
*
44833535 TTTATAAATTTACTGAAATACCCTTGTAG
1 TGTA-AAA-TTACTGAAATACCCTTGTAG
*
44833564 TGTAAAATTACCT-AAGTACCCTTGTAG
1 TGTAAAATTA-CTGAAATACCCTTGTAG
*
44833591 GGTAAAAT
1 TGTAAAAT
44833599 GATTGTTTTG
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
25 3 0.06
26 3 0.06
27 39 0.72
28 6 0.11
29 3 0.06
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (27 bp):
TGTAAAATTACTGAAATACCCTTGTAG
Found at i:44833982 original size:22 final size:22
Alignment explanation
Indices: 44833954--44834009 Score: 89
Period size: 20 Copynumber: 2.6 Consensus size: 22
44833944 TAATCTGATT
*
44833954 ATGGCTTTATGCCAACCTAAAA
1 ATGGCTTTGTGCCAACCTAAAA
44833976 ATGGCTTTGTG-C-ACCTAAAA
1 ATGGCTTTGTGCCAACCTAAAA
44833996 ATGGCTTTGTGCCA
1 ATGGCTTTGTGCCA
44834010 TCTTGACTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 19 0.61
21 2 0.06
22 10 0.32
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAA
Found at i:44834201 original size:32 final size:32
Alignment explanation
Indices: 44834133--44834201 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 32
44834123 AGTCGTTGAT
* * *
44834133 GGCTATGTGCCAAACATAATACAGTTACCAAT
1 GGCTTTGTGCCAAACATAATACAGCTACCAAA
* *
44834165 GGCTTTGTGCCAAATATAATATC-GCTACTAAA
1 GGCTTTGTGCCAAACATAATA-CAGCTACCAAA
44834197 GGCTT
1 GGCTT
44834202 AGAGCCGCAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
32 30 0.97
33 1 0.03
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (32 bp):
GGCTTTGTGCCAAACATAATACAGCTACCAAA
Found at i:44839683 original size:43 final size:43
Alignment explanation
Indices: 44839614--44839735 Score: 192
Period size: 43 Copynumber: 2.9 Consensus size: 43
44839604 TATGATGAAT
*
44839614 TCGGGCTTCAAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
1 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
* * *
44839657 TCGGGCCTCGAGCCTAGTAGGTTATAATGCCGGTGAAATAATA
1 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
*
44839700 TCGGGCTTCGAGCCTAGCAGGCGA-AATGCCGGTGAA
1 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAA
44839736 TGAGTTCAGA
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 12 0.17
43 59 0.83
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (43 bp):
TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
Found at i:44840329 original size:16 final size:18
Alignment explanation
Indices: 44840298--44840332 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
44840288 AACTCGTCAC
44840298 ACTATCTATCGTTTTGGA
1 ACTATCTATCGTTTTGGA
44840316 ACTAT-TAT-GTTTTGGA
1 ACTATCTATCGTTTTGGA
44840332 A
1 A
44840333 TTCATATGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 3 0.18
18 5 0.29
ACGTcount: A:0.26, C:0.11, G:0.17, T:0.46
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGA
Found at i:44843181 original size:27 final size:27
Alignment explanation
Indices: 44843145--44843234 Score: 110
Period size: 27 Copynumber: 3.4 Consensus size: 27
44843135 TTGTTAAAAC
*
44843145 CCCT-GATTTGTGAAATTACCGTAATA
1 CCCTCGATTTGTGAAATTACCGAAATA
* *
44843171 CCCTCAATTTGTGAAATTATCGAAATA
1 CCCTCGATTTGTGAAATTACCGAAATA
* * * *
44843198 CCCCCGACTTGTAAAATTACTGAAATA
1 CCCTCGATTTGTGAAATTACCGAAATA
44843225 CCCTCGATTT
1 CCCTCGATTT
44843235 ATAAATTTAT
Statistics
Matches: 52, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
26 4 0.08
27 48 0.92
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.32
Consensus pattern (27 bp):
CCCTCGATTTGTGAAATTACCGAAATA
Found at i:44843225 original size:54 final size:54
Alignment explanation
Indices: 44843143--44843254 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
44843133 GGTTGTTAAA
* * * * * *
44843143 ACCCCTGATTTGTGAAATTACCGTAATACCCTCAATTTGTGAAA-TTATCGAAAT
1 ACCCCCGACTTGTAAAATTACCGAAATACCCTCAATTTAT-AAATTTATCAAAAT
* *
44843197 ACCCCCGACTTGTAAAATTACTGAAATACCCTCGATTTATAAATTTATCAAAAT
1 ACCCCCGACTTGTAAAATTACCGAAATACCCTCAATTTATAAATTTATCAAAAT
44843251 ACCC
1 ACCC
44843255 TTGTAGTGTA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 3 0.06
54 46 0.94
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (54 bp):
ACCCCCGACTTGTAAAATTACCGAAATACCCTCAATTTATAAATTTATCAAAAT
Found at i:44843239 original size:27 final size:27
Alignment explanation
Indices: 44843145--44843282 Score: 95
Period size: 27 Copynumber: 5.1 Consensus size: 27
44843135 TTGTTAAAAC
* * *
44843145 CCCT-GATTTGTGAAATTACCGTAATA
1 CCCTCGATTTGTAAAATTACTGAAATA
* *
44843171 CCCTCAATTTGTGAAATTA-TCGAAATA
1 CCCTCGATTTGTAAAATTACT-GAAATA
* *
44843198 CCCCCGACTTGTAAAATTACTGAAATA
1 CCCTCGATTTGTAAAATTACTGAAATA
* * *
44843225 CCCTCGATTTATAAATTTA-TCAAAATA
1 CCCTCGATTTGTAAAATTACT-GAAATA
* * * *
44843252 CCCTTG-TAGTGTAAAATTACTTAAGTA
1 CCCTCGAT-TTGTAAAATTACTGAAATA
44843279 CCCT
1 CCCT
44843283 TGTAGGGTAC
Statistics
Matches: 88, Mismatches: 18, Indels: 11
0.75 0.15 0.09
Matches are distributed among these distances:
26 6 0.07
27 80 0.91
28 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33
Consensus pattern (27 bp):
CCCTCGATTTGTAAAATTACTGAAATA
Found at i:44852173 original size:55 final size:55
Alignment explanation
Indices: 44852033--44852176 Score: 162
Period size: 55 Copynumber: 2.6 Consensus size: 55
44852023 TGCAACATGG
* * * * * * **
44852033 CCGTGGGCGAACCTACTAAAACAACACGGGCGTGCGACATGCCCGTGCCTTGAAA
1 CCGTGGGCGAACCTGCCAAAAAAACACGGGTGTGCGACACGCCAGTGCCAAGAAA
* * ** *
44852088 CCGTGGCCGAACCTGTCAAATTAACACGGGTGTGCGACACGCCAGTGCCAAGCAA
1 CCGTGGGCGAACCTGCCAAAAAAACACGGGTGTGCGACACGCCAGTGCCAAGAAA
*
44852143 CCGTGGGTGAACCTGCCAAAAAAACACGGGTGTG
1 CCGTGGGCGAACCTGCCAAAAAAACACGGGTGTG
44852177 GACCTTTATA
Statistics
Matches: 72, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
55 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.28, T:0.15
Consensus pattern (55 bp):
CCGTGGGCGAACCTGCCAAAAAAACACGGGTGTGCGACACGCCAGTGCCAAGAAA
Found at i:44856112 original size:17 final size:18
Alignment explanation
Indices: 44856070--44856118 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
44856060 AGTTGAAAAG
44856070 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
44856089 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
44856106 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
44856119 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:44857004 original size:40 final size:39
Alignment explanation
Indices: 44856938--44857103 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
44856928 AAATTGAATG
* * *
44856938 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
44856977 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
44857016 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
44857056 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
44857096 ATATCCGG
1 ATATCCGG
44857104 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:44864100 original size:17 final size:18
Alignment explanation
Indices: 44864058--44864106 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
44864048 AGTTGAAAAG
44864058 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
44864077 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
44864094 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
44864107 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:44864989 original size:40 final size:40
Alignment explanation
Indices: 44864923--44865089 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
44864913 AAATTGAATG
* * *
44864923 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
44864962 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
44865002 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
44865042 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
44865082 ATATCCGG
1 ATATCCGG
44865090 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:44877099 original size:14 final size:13
Alignment explanation
Indices: 44877079--44877110 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
44877069 AAAATTTGAC
44877079 TTGTTCTTAATTA
1 TTGTTCTTAATTA
44877092 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
44877106 TTGTT
1 TTGTT
44877111 TTGATATTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:44877826 original size:27 final size:27
Alignment explanation
Indices: 44877761--44877831 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
44877751 TCGATTTTTG
* *
44877761 AAATTACTAAAATACCCCTGACTTGTA
1 AAATTACTGAAATACCCCCGACTTGTA
*
44877788 AAATTACTGAAATACCCCCGATTTGTA
1 AAATTACTGAAATACCCCCGACTTGTA
44877815 AAATTA-TCGAAATACCC
1 AAATTACT-GAAATACCC
44877832 TTGTAGTGTA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 1 0.03
27 39 0.98
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (27 bp):
AAATTACTGAAATACCCCCGACTTGTA
Found at i:44877841 original size:27 final size:27
Alignment explanation
Indices: 44877761--44877872 Score: 93
Period size: 27 Copynumber: 4.1 Consensus size: 27
44877751 TCGATTTTTG
** *
44877761 AAATTACTAAAATACCCCTG-ACTTGTA
1 AAATTACCGAAATACCCCTGTA-GTGTA
* * *
44877788 AAATTACTGAAATACCCCCG-ATTTGTA
1 AAATTACCGAAATACCCCTGTA-GTGTA
* *
44877815 AAATTATCGAAATACCCTTGTAGTGTA
1 AAATTACCGAAATACCCCTGTAGTGTA
* * *
44877842 AAATTACCTAAGTACCCCTGTAGGGTA
1 AAATTACCGAAATACCCCTGTAGTGTA
44877869 AAAT
1 AAAT
44877873 GACTATTTTG
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
27 70 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAATACCCCTGTAGTGTA
Found at i:44880523 original size:12 final size:12
Alignment explanation
Indices: 44880502--44880538 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
44880492 AAAGTCTAGC
44880502 ACACGGCCTGTG
1 ACACGGCCTGTG
* *
44880514 GCATGGCCTGTG
1 ACACGGCCTGTG
44880526 ACACGGCCTGTG
1 ACACGGCCTGTG
44880538 A
1 A
44880539 TACAGCTGTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.16, C:0.30, G:0.35, T:0.19
Consensus pattern (12 bp):
ACACGGCCTGTG
Found at i:44880816 original size:21 final size:21
Alignment explanation
Indices: 44880792--44880836 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
44880782 CATTTGAATT
44880792 TGATTCAAGGCCACATAAGCC
1 TGATTCAAGGCCACATAAGCC
*
44880813 TGATTCAAGGTCACATAAGCC
1 TGATTCAAGGCCACATAAGCC
44880834 TGA
1 TGA
44880837 GTGGATTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.22
Consensus pattern (21 bp):
TGATTCAAGGCCACATAAGCC
Found at i:44882303 original size:16 final size:17
Alignment explanation
Indices: 44882272--44882305 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
44882262 GTTTAATCGG
*
44882272 TTTAGTTGTTTGTTTAT
1 TTTAGTTGTTTATTTAT
44882289 TTTAG-TGTTTATTTAT
1 TTTAGTTGTTTATTTAT
44882305 T
1 T
44882306 CTAGCTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.71
Consensus pattern (17 bp):
TTTAGTTGTTTATTTAT
Found at i:44892032 original size:40 final size:40
Alignment explanation
Indices: 44891977--44892344 Score: 370
Period size: 40 Copynumber: 9.3 Consensus size: 40
44891967 AATTATTGTA
* * **
44891977 TGAATGCACATACGTGCCCCTGGTTGTAGTTCAATACCCT
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGGTACCCT
* ** * *
44892017 TGAATGCACATACGTGACATTGATTATACTTCGGTACCCC
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGGTACCCT
* * *
44892057 TGAATGCACATACGTGACCTTGATTGTACTTCGGTACCCA
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGGTACCCT
* *
44892097 TGAATGCACATATGTGCCCCTGATTGTACTTCAGTA-CCT
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGGTACCCT
* ** *
44892136 CTAAATGCACATACGTGCCCCAAATTGTACTTTGGTACCC-
1 -TGAATGCACATACGTGCCCCTGATTGTACTTCGGTACCCT
* * * *
44892176 TGAATACACATACGTGACCCTAATTGTACTTCGGTACCCC
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGGTACCCT
*
44892216 T-AATGCACATACGTGCCCCTGATTGTACTTTGGTA-CCT
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGGTACCCT
* * * ** *
44892254 CTGAATGCACATATGTGCCCTTGATTGTACTTTGACACCCC
1 -TGAATGCACATACGTGCCCCTGATTGTACTTCGGTACCCT
* * * *
44892295 TAAATGCATATACGTG-CCCTAATTGTACTTCGGCACCCCT
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGGTA-CCCT
44892335 T-AATGCACAT
1 TGAATGCACAT
44892345 GTGTGCCTTG
Statistics
Matches: 274, Mismatches: 47, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
38 2 0.01
39 90 0.33
40 178 0.65
41 4 0.01
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.30
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTGATTGTACTTCGGTACCCT
Found at i:44892069 original size:80 final size:80
Alignment explanation
Indices: 44891979--44892344 Score: 411
Period size: 80 Copynumber: 4.6 Consensus size: 80
44891969 TTATTGTATG
* * ** ** *
44891979 AATGCACATACGTGCCCCTGGTTGTAGTTCAATACCCTTGAATGCACATACGTGACATTGATTAT
1 AATGCACATACGTGCCCCTGATTGTACTTCGGTACCCTTGAATGCACATACGTGACCCTGATTGT
*
44892044 ACTTCGGTACCCCTG
66 ACTTCGGTACCCCTA
* * * * *
44892059 AATGCACATACGTGACCTTGATTGTACTTCGGTACCCATGAATGCACATATGTGCCCCTGATTGT
1 AATGCACATACGTGCCCCTGATTGTACTTCGGTACCCTTGAATGCACATACGTGACCCTGATTGT
* *
44892124 ACTTCAGTACCTCTA
66 ACTTCGGTACCCCTA
** * * *
44892139 AATGCACATACGTGCCCCAAATTGTACTTTGGTACCC-TGAATACACATACGTGACCCTAATTGT
1 AATGCACATACGTGCCCCTGATTGTACTTCGGTACCCTTGAATGCACATACGTGACCCTGATTGT
44892203 ACTTCGGTACCCCT-
66 ACTTCGGTACCCCTA
* *
44892217 AATGCACATACGTGCCCCTGATTGTACTTTGGTA-CCTCTGAATGCACATATGTG-CCCTTGATT
1 AATGCACATACGTGCCCCTGATTGTACTTCGGTACCCT-TGAATGCACATACGTGACCC-TGATT
* **
44892280 GTACTTTGACACCCCTA
64 GTACTTCGGTACCCCTA
* * *
44892297 AATGCATATACGTG-CCCTAATTGTACTTCGGCACCCCTT-AATGCACAT
1 AATGCACATACGTGCCCCTGATTGTACTTCGGTA-CCCTTGAATGCACAT
44892345 GTGTGCCTTG
Statistics
Matches: 242, Mismatches: 38, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
77 2 0.01
78 35 0.14
79 91 0.38
80 111 0.46
81 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (80 bp):
AATGCACATACGTGCCCCTGATTGTACTTCGGTACCCTTGAATGCACATACGTGACCCTGATTGT
ACTTCGGTACCCCTA
Found at i:44892269 original size:158 final size:160
Alignment explanation
Indices: 44891979--44892325 Score: 461
Period size: 158 Copynumber: 2.2 Consensus size: 160
44891969 TTATTGTATG
** * * * *
44891979 AATGCACATACGTGCCCCTGGTTGTAGTTCAATACCCTTGAATGCACATACGTGACATTGATTAT
1 AATGCACATACGTGCCCCTAATTGTACTTCAATACCCTTGAATACACATACGTGACACTAATTAT
*
44892044 ACTTCGGTACCCCTGAATGCACATACGTGACCTTGATTGTACTTCGGTACCCATGAATGCACATA
66 ACTTCGGTACCCCTGAATGCACATACGTGACCCTGATTGTACTTCGGTACCCATGAATGCACATA
* *
44892109 TGTGCCCCTGATTGTACTTCAG-TACCTCTA
131 TGTGCCCCTGATTGTACTT-AGACACCCCTA
* *** * *
44892139 AATGCACATACGTGCCCCAAATTGTACTTTGGTACCC-TGAATACACATACGTGACCCTAATTGT
1 AATGCACATACGTGCCCCTAATTGTACTTCAATACCCTTGAATACACATACGTGACACTAATTAT
* *
44892203 ACTTCGGTACCCCT-AATGCACATACGTGCCCCTGATTGTACTTTGGTACCTC-TGAATGCACAT
66 ACTTCGGTACCCCTGAATGCACATACGTGACCCTGATTGTACTTCGGTACC-CATGAATGCACAT
* *
44892266 ATGTGCCCTTGATTGTACTTTGACACCCCTA
130 ATGTGCCCCTGATTGTACTTAGACACCCCTA
*
44892297 AATGCATATACGTG-CCCTAATTGTACTTC
1 AATGCACATACGTGCCCCTAATTGTACTTC
44892326 GGCACCCCTT
Statistics
Matches: 163, Mismatches: 22, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
157 14 0.09
158 82 0.50
159 37 0.23
160 30 0.18
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (160 bp):
AATGCACATACGTGCCCCTAATTGTACTTCAATACCCTTGAATACACATACGTGACACTAATTAT
ACTTCGGTACCCCTGAATGCACATACGTGACCCTGATTGTACTTCGGTACCCATGAATGCACATA
TGTGCCCCTGATTGTACTTAGACACCCCTA
Found at i:44892377 original size:118 final size:120
Alignment explanation
Indices: 44891979--44892368 Score: 466
Period size: 118 Copynumber: 3.3 Consensus size: 120
44891969 TTATTGTATG
* * * * * * * *
44891979 AATGCACATACGTGCCCCTGGTTGTAGTTCAATACC-CTTGAATGCACATACGTGACATTGATTA
1 AATGCACATATGTGCCCCTGATTGTACTTTAGTACCTC-TGAATGCACATACGTGCCCTTGATTG
* * * * *
44892043 TACTTCGGTACCCCTGAATGCACATACGTGACCTTGATTGTACTTCGGTACCCATG
65 TACTTTGGTACCCCTGAATGCACATACGTGACCCTAATTGTACTTCGGTACCCCTT
* * ***
44892099 AATGCACATATGTGCCCCTGATTGTACTTCAGTACCTCTAAATGCACATACGTGCCCCAAATTGT
1 AATGCACATATGTGCCCCTGATTGTACTTTAGTACCTCTGAATGCACATACGTGCCCTTGATTGT
*
44892164 ACTTTGGTA-CCCTGAATACACATACGTGACCCTAATTGTACTTCGGTACCCC-T
66 ACTTTGGTACCCCTGAATGCACATACGTGACCCTAATTGTACTTCGGTACCCCTT
* * *
44892217 AATGCACATACGTGCCCCTGATTGTACTTTGGTACCTCTGAATGCACATATGTGCCCTTGATTGT
1 AATGCACATATGTGCCCCTGATTGTACTTTAGTACCTCTGAATGCACATACGTGCCCTTGATTGT
** * * *
44892282 ACTTTGACACCCCTAAATGCATATACGTG-CCCTAATTGTACTTCGGCACCCCTT
66 ACTTTGGTACCCCTGAATGCACATACGTGACCCTAATTGTACTTCGGTACCCCTT
* * *
44892336 AATGCACATGTGTG-CCTTGTTTGTACTTTAGTA
1 AATGCACATATGTGCCCCTGATTGTACTTTAGTA
44892369 ATCCTGAATT
Statistics
Matches: 231, Mismatches: 36, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
118 102 0.44
119 68 0.29
120 60 0.26
121 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (120 bp):
AATGCACATATGTGCCCCTGATTGTACTTTAGTACCTCTGAATGCACATACGTGCCCTTGATTGT
ACTTTGGTACCCCTGAATGCACATACGTGACCCTAATTGTACTTCGGTACCCCTT
Found at i:44898677 original size:39 final size:39
Alignment explanation
Indices: 44898559--44898741 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
44898549 TCGTTCAAAC
* * ** * **
44898559 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
44898599 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
44898639 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
44898678 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
44898717 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
44898742 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:44906096 original size:39 final size:39
Alignment explanation
Indices: 44905978--44906160 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
44905968 TCGTTCAAAC
* * ** * **
44905978 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
44906018 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
44906058 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
44906097 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
44906136 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
44906161 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:44908215 original size:13 final size:12
Alignment explanation
Indices: 44908195--44908232 Score: 51
Period size: 13 Copynumber: 3.2 Consensus size: 12
44908185 TATACTTTTC
44908195 TCATTCATTCAA
1 TCATTCATTCAA
*
44908207 TCAATTCATGCAA
1 TC-ATTCATTCAA
44908220 TCA-TCATTCAA
1 TCATTCATTCAA
44908231 TC
1 TC
44908233 TCAATTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 9 0.39
12 3 0.13
13 11 0.48
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.37
Consensus pattern (12 bp):
TCATTCATTCAA
Found at i:44915249 original size:15 final size:15
Alignment explanation
Indices: 44915229--44915264 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
44915219 TTGTTTATAG
44915229 AATAACTTTCAGTAC
1 AATAACTTTCAGTAC
44915244 AATAACTTTCAGTAC
1 AATAACTTTCAGTAC
44915259 AATAAC
1 AATAAC
44915265 AACATTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (15 bp):
AATAACTTTCAGTAC
Found at i:44918794 original size:40 final size:40
Alignment explanation
Indices: 44918745--44918912 Score: 189
Period size: 40 Copynumber: 4.2 Consensus size: 40
44918735 TCTTCGGAAT
* * *
44918745 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
44918784 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
*
44918824 TTAGCCCGGATATAACAACTCA-CACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACT-AGCACAAATGCCTTCGGGTC
* *
44918864 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
44918904 TTAGCCCGG
1 TTAGCCCGG
44918913 GTATCATTCA
Statistics
Matches: 106, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
39 4 0.04
40 101 0.95
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:44929155 original size:20 final size:20
Alignment explanation
Indices: 44929132--44929194 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
44929122 TACACACATG
44929132 CCCCTGATTGTACTTTGGTA
1 CCCCTGATTGTACTTTGGTA
* * * *
44929152 CCCCTGAATGCACATAT-GTG
1 CCCCTGATTGTAC-TTTGGTA
*
44929172 CCCATGATTGTACTTTGGTA
1 CCCCTGATTGTACTTTGGTA
44929192 CCC
1 CCC
44929195 TTGAATGCAC
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
19 2 0.06
20 28 0.88
21 2 0.06
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (20 bp):
CCCCTGATTGTACTTTGGTA
Found at i:44929174 original size:40 final size:40
Alignment explanation
Indices: 44929083--44929266 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 40
44929073 GTATGAATAG
* * * ** * *
44929083 ACATACGTGCCCTTAATTATACTTCAGTACCCCTTAATGT
1 ACATACGTGCCCCTGATTGTACTTTGGTACCCCTGAATGC
* *
44929123 ACACACATGCCCCTGATTGTACTTTGGTACCCCTGAATGC
1 ACATACGTGCCCCTGATTGTACTTTGGTACCCCTGAATGC
* * *
44929163 ACATATGTGCCCATGATTGTACTTTGGTACCCTTGAATGC
1 ACATACGTGCCCCTGATTGTACTTTGGTACCCCTGAATGC
* * * * *
44929203 ACATACGTGCCCCTGATTATGCTATGGTGCCCCTGGATGC
1 ACATACGTGCCCCTGATTGTACTTTGGTACCCCTGAATGC
* *
44929243 ACATACGT-TCCCTGTTTGTACTTT
1 ACATACGTGCCCCTGATTGTACTTT
44929267 AGTAATCCTG
Statistics
Matches: 117, Mismatches: 27, Indels: 1
0.81 0.19 0.01
Matches are distributed among these distances:
39 11 0.09
40 106 0.91
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (40 bp):
ACATACGTGCCCCTGATTGTACTTTGGTACCCCTGAATGC
Found at i:44943292 original size:40 final size:41
Alignment explanation
Indices: 44943248--44943346 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
44943238 TCGACTGTCC
* * **
44943248 TCGGGACATAGCCCGG-TTATAGTTA-TTCGCACAATTGCCT
1 TCGGGACATAGCCCGGATT-TAGTAACTTAGCACAAAAGCCT
44943288 TCGGGA-ATTAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
1 TCGGGACA-TAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
*
44943329 TCGGGACTTAGCCCGGAT
1 TCGGGACATAGCCCGGAT
44943347 ACCATTCGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 1 0.02
40 19 0.38
41 30 0.60
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (41 bp):
TCGGGACATAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
Found at i:44943990 original size:29 final size:29
Alignment explanation
Indices: 44943829--44943982 Score: 281
Period size: 29 Copynumber: 5.3 Consensus size: 29
44943819 TGTTGAAAAA
* *
44943829 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
44943858 CTTGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
44943887 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
44943916 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
44943945 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
44943974 CTCGCACAC
1 CTCGCACAC
44943983 GTAATGCCCA
Statistics
Matches: 121, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 121 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:44946077 original size:37 final size:36
Alignment explanation
Indices: 44946024--44946113 Score: 144
Period size: 37 Copynumber: 2.4 Consensus size: 36
44946014 TATAAAAGAA
44946024 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATC-G
*
44946061 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCG
*
44946097 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
44946114 TTCCAAGTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
36 11 0.22
37 38 0.78
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.24
Consensus pattern (36 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCG
Found at i:44946264 original size:49 final size:49
Alignment explanation
Indices: 44946209--44946423 Score: 367
Period size: 49 Copynumber: 4.4 Consensus size: 49
44946199 TTTTACATTA
44946209 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
44946258 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
44946307 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
44946356 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
44946405 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
44946424 CATATATGTA
Statistics
Matches: 160, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 160 1.00
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:44953282 original size:18 final size:18
Alignment explanation
Indices: 44953236--44953283 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
44953226 TATCGTAAAA
44953236 AATGCCAAGATATTTTAC
1 AATGCCAAGATATTTTAC
*
44953254 AAT-CTATAGATATTTTAC
1 AATGCCA-AGATATTTTAC
44953272 AATGCCAAGATA
1 AATGCCAAGATA
44953284 CAACTATGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 2 0.08
18 22 0.85
19 2 0.08
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (18 bp):
AATGCCAAGATATTTTAC
Found at i:44955631 original size:28 final size:27
Alignment explanation
Indices: 44955573--44955632 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 27
44955563 TATTCAGTAT
*
44955573 CAGTACAGTCTGGGCCTTAGCCCTTAAA
1 CAGTACAGTCTGGGCCTAAGCCC-TAAA
*
44955601 CAGTAACAGTGTGGGCCTAAGCCC-AATA
1 CAGT-ACAGTCTGGGCCTAAGCCCTAA-A
44955629 CAGT
1 CAGT
44955633 TTTAGTATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 2 0.07
28 9 0.32
29 17 0.61
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (27 bp):
CAGTACAGTCTGGGCCTAAGCCCTAAA
Found at i:44960874 original size:16 final size:16
Alignment explanation
Indices: 44960831--44960865 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
44960821 GTAGATCGGC
*
44960831 AAAAGCAGAAATGTCG
1 AAAAGCTGAAATGTCG
44960847 AAAAGCTGAAATGTCG
1 AAAAGCTGAAATGTCG
44960863 AAA
1 AAA
44960866 TGTCGAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.51, C:0.11, G:0.23, T:0.14
Consensus pattern (16 bp):
AAAAGCTGAAATGTCG
Found at i:44960889 original size:24 final size:24
Alignment explanation
Indices: 44960831--44960889 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 24
44960821 GTAGATCGGC
* *
44960831 AAAAGCAGAAATGTCGAAAAGCTG
1 AAAAGCTGAAATGTCGAAAACCTG
*
44960855 AAATG-TCGAAATGTCGAAATACCT-
1 AAAAGCT-GAAATGTCGAAA-ACCTG
44960879 AAAAGCTGAAA
1 AAAAGCTGAAA
44960890 GTTTGGCTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
24 24 0.86
25 4 0.14
ACGTcount: A:0.49, C:0.14, G:0.20, T:0.17
Consensus pattern (24 bp):
AAAAGCTGAAATGTCGAAAACCTG
Found at i:44966331 original size:412 final size:412
Alignment explanation
Indices: 44965567--44966393 Score: 1600
Period size: 412 Copynumber: 2.0 Consensus size: 412
44965557 ATCTCCAACC
44965567 TGAGCTAGTTAAATTAACCTATAAGAGATGGGAAAAGAAGGGGAGTAAGCTTTAAATCTTAGTAA
1 TGAGCTAGTTAAATTAACCTATAAGAGATGGGAAAAGAAGGGGAGTAAGCTTTAAATCTTAGTAA
44965632 GTCCATATGAAAATAATAAGCATTTTATTAACATGCTTCTACAAATTCTCACAACATGATCTCAA
66 GTCCATATGAAAATAATAAGCATTTTATTAACATGCTTCTACAAATTCTCACAACATGATCTCAA
44965697 GGTAATACAATCATATTTGCACCTTTTTACTTATATTCATGACAAGCTGTCCACTCGAGTGAGAG
131 GGTAATACAATCATATTTGCACCTTTTTACTTATATTCATGACAAGCTGTCCACTCGAGTGAGAG
44965762 TCACTCAATTATTTATAACTTGAGCTACAGAATTCTAAATTAATATATATTAAAATAATTTGAAA
196 TCACTCAATTATTTATAACTTGAGCTACAGAATTCTAAATTAATATATATTAAAATAATTTGAAA
44965827 CTAGACTCATATATCTTTCTACCATAAAATTTTCAGAATTTATGGACTAGCCAATAAGTATAGTT
261 CTAGACTCATATATCTTTCTACCATAAAATTTTCAGAATTTATGGACTAGCCAATAAGTATAGTT
*
44965892 TATTCTTCAAATTTACCCCTGTTCTGTTGTTTGACAGCTTGACCTTTCTTTACTAAAAATTAATT
326 TATTCTTCAAAGTTACCCCTGTTCTGTTGTTTGACAGCTTGACCTTTCTTTACTAAAAATTAATT
44965957 ATATGTTAATACAGGATTTGGA
391 ATATGTTAATACAGGATTTGGA
44965979 TGAGCTAGTTAAATTAACCTATAAGAGATGGGAAAAGAAGGGGAGTAAGCTTTAAATCTTAGTAA
1 TGAGCTAGTTAAATTAACCTATAAGAGATGGGAAAAGAAGGGGAGTAAGCTTTAAATCTTAGTAA
*
44966044 TTCCATATGAAAATAATAAGCATTTTATTAACATGCTTCTACAAATTCTCACAACATGATCTCAA
66 GTCCATATGAAAATAATAAGCATTTTATTAACATGCTTCTACAAATTCTCACAACATGATCTCAA
* * *
44966109 GGTAATACAATCATGTTTGCACCTTTTTACTTATATTCATGACAAGTTGTCCACTCGAGTGATAG
131 GGTAATACAATCATATTTGCACCTTTTTACTTATATTCATGACAAGCTGTCCACTCGAGTGAGAG
*
44966174 TCACTCAATTATTTATAACTTGAGCTATAGAATTCTAAATTAATATATATTAAAATAATTTGAAA
196 TCACTCAATTATTTATAACTTGAGCTACAGAATTCTAAATTAATATATATTAAAATAATTTGAAA
44966239 CTAGACTCATATATCTTTCTACCATAAAATTTTCAGAATTTATGGACTAGCCAATAAGTATAGTT
261 CTAGACTCATATATCTTTCTACCATAAAATTTTCAGAATTTATGGACTAGCCAATAAGTATAGTT
44966304 TATTCTTCAAAGTTACCCCTGTTCTGTTGTTTGACAGCTTGACCTTTCTTTACTAAAAATTAATT
326 TATTCTTCAAAGTTACCCCTGTTCTGTTGTTTGACAGCTTGACCTTTCTTTACTAAAAATTAATT
44966369 ATATGTTAATACAGGATTTGGA
391 ATATGTTAATACAGGATTTGGA
44966391 TGA
1 TGA
44966394 TGTTCCCTTC
Statistics
Matches: 409, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
412 409 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (412 bp):
TGAGCTAGTTAAATTAACCTATAAGAGATGGGAAAAGAAGGGGAGTAAGCTTTAAATCTTAGTAA
GTCCATATGAAAATAATAAGCATTTTATTAACATGCTTCTACAAATTCTCACAACATGATCTCAA
GGTAATACAATCATATTTGCACCTTTTTACTTATATTCATGACAAGCTGTCCACTCGAGTGAGAG
TCACTCAATTATTTATAACTTGAGCTACAGAATTCTAAATTAATATATATTAAAATAATTTGAAA
CTAGACTCATATATCTTTCTACCATAAAATTTTCAGAATTTATGGACTAGCCAATAAGTATAGTT
TATTCTTCAAAGTTACCCCTGTTCTGTTGTTTGACAGCTTGACCTTTCTTTACTAAAAATTAATT
ATATGTTAATACAGGATTTGGA
Found at i:44970023 original size:26 final size:25
Alignment explanation
Indices: 44969977--44970028 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
44969967 TCAAACATGC
44969977 ATTTAGGTCAATTTAACCCTATGGGT
1 ATTTAGGTCAATTTAACCCTA-GGGT
* *
44970003 ATTTCGGT-AATTTATCTCCTAGGGT
1 ATTTAGGTCAATTTAAC-CCTAGGGT
44970028 A
1 A
44970029 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.40
Consensus pattern (25 bp):
ATTTAGGTCAATTTAACCCTAGGGT
Found at i:44971548 original size:26 final size:26
Alignment explanation
Indices: 44971512--44971620 Score: 182
Period size: 26 Copynumber: 4.2 Consensus size: 26
44971502 ATGAAATTCC
*
44971512 TATCATGGAACATTTACCTAAACCAT
1 TATCATGGAACATTTACCTAACCCAT
44971538 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
* * *
44971564 TATCATAGAATATTTACCTAATCCAT
1 TATCATGGAACATTTACCTAACCCAT
44971590 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
44971616 TATCA
1 TATCA
44971621 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAACCCAT
Found at i:44975988 original size:46 final size:46
Alignment explanation
Indices: 44975938--44976065 Score: 211
Period size: 46 Copynumber: 2.8 Consensus size: 46
44975928 TGGCTGAGCA
*
44975938 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
44975984 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
44976030 CCCGAGCTCGTTGAGTTGAGTCGGAGTTCGCTTATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
44976066 AGCGGGTTAC
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:44978065 original size:24 final size:23
Alignment explanation
Indices: 44978029--44978074 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
44978019 TATATTAGTG
*
44978029 AAAGATTTATTGATCAGAAGCAT
1 AAAGATTTATTGAGCAGAAGCAT
* *
44978052 AAAGAATTTCTTGAGCTGAAGCA
1 AAAG-ATTTATTGAGCAGAAGCA
44978075 AGGTAATATG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.28
Consensus pattern (23 bp):
AAAGATTTATTGAGCAGAAGCAT
Found at i:44983032 original size:46 final size:46
Alignment explanation
Indices: 44982982--44983109 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
44982972 TGGCTGAGCA
*
44982982 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
44983028 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
44983074 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC-CTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
44983110 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
45 7 0.09
46 70 0.91
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:44986274 original size:43 final size:43
Alignment explanation
Indices: 44986218--44986508 Score: 415
Period size: 43 Copynumber: 6.8 Consensus size: 43
44986208 TGTCAACGTT
* * * *
44986218 CCAGATGTAGTCTTACATGTAATCACATATCGATGCCACTGTC
1 CCAGACGTGGTCTTACACGTAATCACATATCGATGCCAATGTC
*
44986261 CCAGACAG-GGTCTTA-ACGTAATCACATATCGATGCCAACGTC
1 CCAGAC-GTGGTCTTACACGTAATCACATATCGATGCCAATGTC
* * * * * *
44986303 CCAGACTTGGACTTACATGTAATCACATATCGGTACCAACGTC
1 CCAGACGTGGTCTTACACGTAATCACATATCGATGCCAATGTC
* * *
44986346 CCAGATGTGGTCTTACACATAATCACATATCGATGCCAAAGTC
1 CCAGACGTGGTCTTACACGTAATCACATATCGATGCCAATGTC
*
44986389 CCAGACGTGGTCTTACACATAATCACATATCGATGCCAATGTC
1 CCAGACGTGGTCTTACACGTAATCACATATCGATGCCAATGTC
*
44986432 CCAGACGTGGTCTTACACGTAATCACATATTGATGCCAATGTC
1 CCAGACGTGGTCTTACACGTAATCACATATCGATGCCAATGTC
44986475 CCAGACGTGGTCTTACACGTAATCACATATCGAT
1 CCAGACGTGGTCTTACACGTAATCACATATCGAT
44986509 ATTACATATC
Statistics
Matches: 222, Mismatches: 23, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
42 36 0.16
43 185 0.83
44 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
CCAGACGTGGTCTTACACGTAATCACATATCGATGCCAATGTC
Found at i:44987591 original size:14 final size:15
Alignment explanation
Indices: 44987574--44987602 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
44987564 ACATGAAAAT
44987574 TTCACACA-TATAAA
1 TTCACACATTATAAA
44987588 TTCACACATTATAAA
1 TTCACACATTATAAA
44987603 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (15 bp):
TTCACACATTATAAA
Found at i:44992975 original size:43 final size:43
Alignment explanation
Indices: 44992917--44993012 Score: 129
Period size: 43 Copynumber: 2.2 Consensus size: 43
44992907 TACACATTCG
**
44992917 ATCACATATTGATGCCAACGTCCCAAACGTGGTCTTACACATA
1 ATCACATATCAATGCCAACGTCCCAAACGTGGTCTTACACATA
* * * * *
44992960 ATCACATATCAATGCCAACGTTCTAGACGTGGTCTTACGCGTA
1 ATCACATATCAATGCCAACGTCCCAAACGTGGTCTTACACATA
44993003 ATCACATATC
1 ATCACATATC
44993013 GATATCACAT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (43 bp):
ATCACATATCAATGCCAACGTCCCAAACGTGGTCTTACACATA
Found at i:44993597 original size:15 final size:15
Alignment explanation
Indices: 44993574--44993603 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
44993564 TCAAAAATTC
44993574 TAATACAAAACATAT
1 TAATACAAAACATAT
*
44993589 TAATCCAAAACATAT
1 TAATACAAAACATAT
44993604 CTTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:44997064 original size:27 final size:26
Alignment explanation
Indices: 44997020--44997071 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
44997010 CTCGCTGCAA
*
44997020 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
44997047 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
44997072 GTAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:44997125 original size:31 final size:30
Alignment explanation
Indices: 44997087--44997145 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
44997077 CTCGCTGTAA
* *
44997087 TCTGGTGGCTTCGCCACATATATATATATGT
1 TCTGGTGGCCTAGCCACA-ATATATATATGT
*
44997118 TCTGGTGGCCTAGCCACAATATCTATAT
1 TCTGGTGGCCTAGCCACAATATATATAT
44997146 CTGGTGACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 9 0.36
31 16 0.64
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.36
Consensus pattern (30 bp):
TCTGGTGGCCTAGCCACAATATATATATGT
Found at i:44998586 original size:11 final size:11
Alignment explanation
Indices: 44998570--44998596 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
44998560 ACGTGAGAAA
44998570 TGTAATTGAAC
1 TGTAATTGAAC
44998581 TGTAATTGAAC
1 TGTAATTGAAC
44998592 TGTAA
1 TGTAA
44998597 AGTATTACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.07, G:0.19, T:0.37
Consensus pattern (11 bp):
TGTAATTGAAC
Found at i:44999482 original size:19 final size:19
Alignment explanation
Indices: 44999446--44999483 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
44999436 GTTAATATAA
*
44999446 TGATGTGGTTGATTATGGT
1 TGATGTGGTTGATAATGGT
44999465 TGATGTGGTATG-TAATGGT
1 TGATGTGGT-TGATAATGGT
44999484 AAAATAGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.18, C:0.00, G:0.37, T:0.45
Consensus pattern (19 bp):
TGATGTGGTTGATAATGGT
Found at i:45002737 original size:40 final size:40
Alignment explanation
Indices: 45002663--45002846 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
45002653 GCTACTCGTT
*
45002663 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
45002702 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
45002742 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
45002781 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
45002822 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45002847 CATCATTCGA
Statistics
Matches: 126, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 44 0.35
40 67 0.53
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:45002762 original size:79 final size:79
Alignment explanation
Indices: 45002665--45002846 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 79
45002655 TACTCGTTCA
* * *
45002665 AATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGA
* *
45002728 TTTAGTAAC-TCGCACC
64 TATAGTAACTTAGCA-C
**
45002744 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATA
1 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
* *
45002809 TGGTCACTTAGCAC
66 TAGTAACTTAGCAC
*
45002823 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGA
45002847 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 70 0.79
80 16 0.18
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
TAGTAACTTAGCAC
Done.