Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 151 of 325
Found at i:46043233 original size:12 final size:12
Alignment explanation
Indices: 46043225--46043249 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
46043215 TTTGAAAAGC
46043225 AAAAAGAAAATG
1 AAAAAGAAAATG
46043237 AAAAAGAAAATG
1 AAAAAGAAAATG
46043249 A
1 A
46043250 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:46043246 original size:18 final size:18
Alignment explanation
Indices: 46043219--46043274 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
46043209 AAAGCCTTTG
46043219 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
46043238 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
* *
46043256 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
46043273 AA
1 AA
46043275 TTTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:46043259 original size:30 final size:31
Alignment explanation
Indices: 46043225--46043306 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
46043215 TTTGAAAAGC
*
46043225 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* * *
46043255 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
*
46043285 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
46043307 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.65, C:0.01, G:0.22, T:0.12
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:46045552 original size:30 final size:30
Alignment explanation
Indices: 46045518--46045615 Score: 90
Period size: 30 Copynumber: 3.3 Consensus size: 30
46045508 AGCTCACTCC
46045518 TAGCTCATATTCAGCTCACGAGCTAAACCT
1 TAGCTCATATTCAGCTCACGAGCTAAACCT
** * * * * *
46045548 TAGCTCAGCTTCAGCTTAGGAGTTTAATCT
1 TAGCTCATATTCAGCTCACGAGCTAAACCT
* * *
46045578 CAGCTCA-ACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
46045608 TAGCTCAT
1 TAGCTCAT
46045616 TTTAGTTTAA
Statistics
Matches: 50, Mismatches: 16, Indels: 3
0.72 0.23 0.04
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.30
Consensus pattern (30 bp):
TAGCTCATATTCAGCTCACGAGCTAAACCT
Found at i:46048920 original size:19 final size:19
Alignment explanation
Indices: 46048896--46048935 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
46048886 AGCTCCCATG
46048896 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
46048915 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
46048934 TA
1 TA
46048936 TCAGCTCATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:46050198 original size:14 final size:14
Alignment explanation
Indices: 46050179--46050221 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
46050169 AACCGGCCTA
*
46050179 TTTGTTCATACCAT
1 TTTGTTCCTACCAT
*
46050193 TTTGTTCCTACCCT
1 TTTGTTCCTACCAT
*
46050207 TTCGTTCCTACCAT
1 TTTGTTCCTACCAT
46050221 T
1 T
46050222 CCATTCGTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.14, C:0.30, G:0.07, T:0.49
Consensus pattern (14 bp):
TTTGTTCCTACCAT
Found at i:46050507 original size:13 final size:13
Alignment explanation
Indices: 46050489--46050513 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46050479 TAACCTACAA
46050489 AATTAAATAACAT
1 AATTAAATAACAT
46050502 AATTAAATAACA
1 AATTAAATAACA
46050514 CACAACTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (13 bp):
AATTAAATAACAT
Found at i:46050753 original size:10 final size:10
Alignment explanation
Indices: 46050738--46050783 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
46050728 AAAAAGGAAT
46050738 GAGCTAAAAC
1 GAGCTAAAAC
*
46050748 GAGCTAAATTC
1 GAGCTAAA-AC
* *
46050759 GAGCTCAAAT
1 GAGCTAAAAC
46050769 GAGCTAAAAC
1 GAGCTAAAAC
46050779 GAGCT
1 GAGCT
46050784 TAAGTGAGCT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
10 21 0.72
11 8 0.28
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.17
Consensus pattern (10 bp):
GAGCTAAAAC
Found at i:46050772 original size:21 final size:20
Alignment explanation
Indices: 46050738--46050793 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 20
46050728 AAAAAGGAAT
* *
46050738 GAGCTAAAACGAGCTAAATTC
1 GAGCTAAAATGAGCTAAA-AC
*
46050759 GAGCTCAAATGAGCTAAAAC
1 GAGCTAAAATGAGCTAAAAC
* *
46050779 GAGCTTAAGTGAGCT
1 GAGCTAAAATGAGCT
46050794 GATGGAAACT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 14 0.47
21 16 0.53
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (20 bp):
GAGCTAAAATGAGCTAAAAC
Found at i:46054811 original size:30 final size:30
Alignment explanation
Indices: 46054725--46054822 Score: 97
Period size: 30 Copynumber: 3.3 Consensus size: 30
46054715 TTAAACTAAA
* *
46054725 ATGAGCTAAGCTTTAGCTCGTGAGCTAAAG
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
* * * * * *
46054755 TTGAGCTGAGATTAAACTCCTAAGCTGAAG
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
* * *
46054785 CTGAGCTAAGGTTTAGCTCGTGAGCTGAAT
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
46054815 ATGAGCTA
1 ATGAGCTA
46054823 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
Found at i:46057106 original size:30 final size:30
Alignment explanation
Indices: 46057035--46057117 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
46057025 CTTTTGTTTC
* *
46057035 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
46057066 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
46057095 ATTTTCTTTTTCATTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
46057118 GCTTTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.11
30 32 0.71
31 8 0.18
ACGTcount: A:0.13, C:0.22, G:0.01, T:0.64
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:46057117 original size:18 final size:18
Alignment explanation
Indices: 46057068--46057123 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
46057058 CACTCTCAAA
* *
46057068 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
46057085 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
46057103 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
46057122 TT
1 TT
46057124 CAAAGACTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:46057124 original size:12 final size:12
Alignment explanation
Indices: 46057093--46057117 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
46057083 TTTTTCAATC
46057093 TCATTTTCTTTT
1 TCATTTTCTTTT
46057105 TCATTTTCTTTT
1 TCATTTTCTTTT
46057117 T
1 T
46057118 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:46057135 original size:12 final size:12
Alignment explanation
Indices: 46057120--46057150 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
46057110 TTCTTTTTGC
46057120 TTTTCAAAGACT
1 TTTTCAAAGACT
*
46057132 TTTTCAAAGGCT
1 TTTTCAAAGACT
46057144 TTTTCAA
1 TTTTCAA
46057151 GTTCTCTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGACT
Found at i:46057208 original size:5 final size:5
Alignment explanation
Indices: 46057198--46057254 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
46057188 CTTTTGCCTC
*
46057198 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
46057245 TCTTT TCTTT
1 TCTTT TCTTT
46057255 GTTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:46057238 original size:15 final size:14
Alignment explanation
Indices: 46057198--46057254 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
46057188 CTTTTGCCTC
*
46057198 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
46057213 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
46057228 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
46057245 TCTTTTCTTT
1 TCTTTTCTTT
46057255 GTTTTCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:46057255 original size:21 final size:21
Alignment explanation
Indices: 46057198--46057265 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
46057188 CTTTTGCCTC
* *
46057198 TCTTTTCTTTT-TATTTCATTT
1 TCTTTTCTTTTCT-TTGCTTTT
*
46057219 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCTTTTC-TTTGCTTTT
46057240 TCTTTTCTTTTCTTTG-TTTT
1 TCTTTTCTTTTCTTTGCTTTT
46057260 CTCTTT
1 -TCTTT
46057266 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 7 0.18
21 27 0.69
22 5 0.13
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (21 bp):
TCTTTTCTTTTCTTTGCTTTT
Found at i:46059782 original size:30 final size:30
Alignment explanation
Indices: 46059748--46059844 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
46059738 TAAACTAAAA
*
46059748 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* * * * * * *
46059778 TGAGCTGAGATTAAACTCCTAAGCTGAAGC
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
*
46059808 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
46059837 ATGAGCTA
1 -TGAGCTA
46059845 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
Found at i:46060899 original size:47 final size:47
Alignment explanation
Indices: 46060845--46060947 Score: 197
Period size: 47 Copynumber: 2.2 Consensus size: 47
46060835 GATGCACTGT
46060845 GCCGTCCAAAGGAAATGTATGACATTAATCCATATGCATGTATCCAA
1 GCCGTCCAAAGGAAATGTATGACATTAATCCATATGCATGTATCCAA
46060892 GCCGTCCAAAGGAAATGTATGACATTAATCCATATGCATGTATCCAA
1 GCCGTCCAAAGGAAATGTATGACATTAATCCATATGCATGTATCCAA
*
46060939 GCCTTCCAA
1 GCCGTCCAA
46060948 GTGCATGTGC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (47 bp):
GCCGTCCAAAGGAAATGTATGACATTAATCCATATGCATGTATCCAA
Found at i:46062425 original size:40 final size:40
Alignment explanation
Indices: 46062334--46062426 Score: 134
Period size: 40 Copynumber: 2.3 Consensus size: 40
46062324 ATTGAGTTGT
**
46062334 TGGACTTTATTAAACTCATCTTAATTAATTATTCATTTGC
1 TGGACTTTATTTTACTCATCTTAATTAATTATTCATTTGC
* *
46062374 TGGACTATATTTTACTCATCTTAGTTAATTA-TCTATTTGC
1 TGGACTTTATTTTACTCATCTTAATTAATTATTC-ATTTGC
46062414 TGGACTTTATTTT
1 TGGACTTTATTTT
46062427 TATTAAACTT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 2 0.04
40 45 0.96
ACGTcount: A:0.26, C:0.14, G:0.10, T:0.51
Consensus pattern (40 bp):
TGGACTTTATTTTACTCATCTTAATTAATTATTCATTTGC
Found at i:46062610 original size:11 final size:11
Alignment explanation
Indices: 46062591--46062624 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
46062581 ATTAAGTATA
*
46062591 GTGTGTTTAAT
1 GTGTTTTTAAT
46062602 GTGTTTTTAAT
1 GTGTTTTTAAT
46062613 GTGTTTGTTAAT
1 GTGTTT-TTAAT
46062625 TCTTGTAGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 16 0.76
12 5 0.24
ACGTcount: A:0.18, C:0.00, G:0.24, T:0.59
Consensus pattern (11 bp):
GTGTTTTTAAT
Found at i:46071448 original size:30 final size:30
Alignment explanation
Indices: 46071414--46071510 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
46071404 TAAACTAAAA
46071414 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
46071444 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
46071474 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
46071504 TGAGCTA
1 TGAGCTA
46071511 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:46075515 original size:14 final size:14
Alignment explanation
Indices: 46075468--46075515 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
46075458 GTACGAATGG
*
46075468 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
46075482 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
46075496 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
46075510 ATTGGT
1 AATGGT
46075516 CGGTTTAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:46078170 original size:10 final size:10
Alignment explanation
Indices: 46078155--46078181 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
46078145 TACTCCTTCA
46078155 AGCTCAAATC
1 AGCTCAAATC
46078165 AGCTCAAATC
1 AGCTCAAATC
46078175 AGCTCAA
1 AGCTCAA
46078182 CTTCAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.30, G:0.11, T:0.19
Consensus pattern (10 bp):
AGCTCAAATC
Found at i:46084989 original size:10 final size:10
Alignment explanation
Indices: 46084974--46085000 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
46084964 TACTCCTTCA
46084974 AGCTCAAATC
1 AGCTCAAATC
46084984 AGCTCAAATC
1 AGCTCAAATC
46084994 AGCTCAA
1 AGCTCAA
46085001 CTTCAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.30, G:0.11, T:0.19
Consensus pattern (10 bp):
AGCTCAAATC
Found at i:46090433 original size:19 final size:18
Alignment explanation
Indices: 46090409--46090452 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
46090399 TAAATCACTC
*
46090409 TTTTTTTCGATTTTTTTTA
1 TTTTTTTCGA-ATTTTTTA
46090428 TTTTTTTCGAATTTTTTA
1 TTTTTTTCGAATTTTTTA
46090446 TTTTTTT
1 TTTTTTT
46090453 TAACTTGTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.11, C:0.05, G:0.05, T:0.80
Consensus pattern (18 bp):
TTTTTTTCGAATTTTTTA
Found at i:46090453 original size:19 final size:19
Alignment explanation
Indices: 46090409--46090453 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
46090399 TAAATCACTC
*
46090409 TTTTTTTCGATTTTTTTTA
1 TTTTTTTCGATTTTTTATA
46090428 TTTTTTTCGAATTTTTTAT-
1 TTTTTTTCG-ATTTTTTATA
46090447 TTTTTTT
1 TTTTTTT
46090454 AACTTGTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.11, C:0.04, G:0.04, T:0.80
Consensus pattern (19 bp):
TTTTTTTCGATTTTTTATA
Found at i:46090867 original size:14 final size:14
Alignment explanation
Indices: 46090820--46090867 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
46090810 GTACGAATGG
*
46090820 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
46090834 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
46090848 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
46090862 ATTGGT
1 AATGGT
46090868 CGGTTTAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:46100064 original size:40 final size:40
Alignment explanation
Indices: 46099998--46100164 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
46099988 AAATTGAATG
* * *
46099998 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
46100037 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
46100077 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
46100117 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
46100157 ATATCCGG
1 ATATCCGG
46100165 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:46107409 original size:40 final size:40
Alignment explanation
Indices: 46107364--46107530 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
46107354 CGGAATATAA
46107364 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
46107404 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
46107444 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
46107484 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
46107523 CCGGATAT
1 CCGGATAT
46107531 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:46114863 original size:40 final size:40
Alignment explanation
Indices: 46114818--46114984 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
46114808 CGGAATATAA
46114818 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
46114858 CCGGATAGAATAATTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** ** *
46114898 CCGGATATAGCCACTAGCACATTTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
46114938 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
46114977 CCGGATAT
1 CCGGATAT
46114985 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:46131057 original size:29 final size:29
Alignment explanation
Indices: 46131018--46131092 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
46131008 GGTTGAGAGA
* *
46131018 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
46131047 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
46131076 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
46131093 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:46138968 original size:29 final size:29
Alignment explanation
Indices: 46138929--46139003 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
46138919 GGTTGAGAGA
* *
46138929 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
46138958 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
46138987 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
46139004 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:46142730 original size:11 final size:12
Alignment explanation
Indices: 46142708--46142733 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46142698 TAAATATACG
46142708 TTTTTCCTTTTT
1 TTTTTCCTTTTT
46142720 TTTTTCCTTTTT
1 TTTTTCCTTTTT
46142732 TT
1 TT
46142734 AAGAATAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTCCTTTTT
Found at i:46151003 original size:46 final size:46
Alignment explanation
Indices: 46150950--46151125 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
46150940 TATTTGGGCA
*
46150950 TCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
46150996 TCCGAACTCGTTGAGTTGAGTCCGAGTT---TGA-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* * *
46151041 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
46151089 CCCGAGCTCATTGAGTTGAGTCCAAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46151126 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
45 1 0.01
46 60 0.56
47 27 0.25
48 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:46151105 original size:93 final size:93
Alignment explanation
Indices: 46150946--46151116 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
46150936 AGGATATTTG
* * * *
46150946 GGCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCATTGAG
*
46151011 TTGAGTCCGAGTTTGAGAGATGTAACTA
66 TTGAGTCCAAGTTTGAGAGATGTAACTA
* * *
46151039 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCATTGAG
46151104 TTGAGTCCAAGTT
66 TTGAGTCCAAGTT
46151117 CGCTTATGGG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCATTGAG
TTGAGTCCAAGTTTGAGAGATGTAACTA
Found at i:46154644 original size:40 final size:40
Alignment explanation
Indices: 46154596--46154763 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
46154586 TCTTCGAAAT
* * * *
46154596 TTAG-CCGGATATAACCACAAACACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** * *
46154635 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGAGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
46154675 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
46154715 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
46154755 TTAGCCCGG
1 TTAGCCCGG
46154764 GTATCATTCA
Statistics
Matches: 104, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 3 0.03
40 100 0.96
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:46158204 original size:24 final size:24
Alignment explanation
Indices: 46158172--46158218 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
46158162 CAAATCTGAG
46158172 TTAGAAAAATATTTTAATATTATT
1 TTAGAAAAATATTTTAATATTATT
46158196 TTAGAAAAATATTTTAATATTAT
1 TTAGAAAAATATTTTAATATTAT
46158219 ATTCTATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (24 bp):
TTAGAAAAATATTTTAATATTATT
Found at i:46159493 original size:43 final size:43
Alignment explanation
Indices: 46159372--46159528 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
46159362 TATGTTATTG
*
46159372 TGTAAGACCATGTCTGGGAT-GTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCATGTCTGGGATAG-TGGCATCGA-TATTTGATTT-CA
* * *
46159416 TGTAAAACCATGTCTGGGACA-TCGGCATCG-TATTTGATTTCG
1 TGTAAGACCATGTCTGGGATAGT-GGCATCGATATTTGATTTCA
*
46159458 TGTAAGATCC-TGTCTGGGATAGTGGCATCGATATTTGATTACA
1 TGTAAGA-CCATGTCTGGGATAGTGGCATCGATATTTGATTTCA
* *
46159501 TGTAAGACCACGTCTAGGAT-GTTGGCAT
1 TGTAAGACCATGTCTGGGATAG-TGGCAT
46159529 TGTACAAGCT
Statistics
Matches: 95, Mismatches: 10, Indels: 17
0.78 0.08 0.14
Matches are distributed among these distances:
42 28 0.29
43 42 0.44
44 25 0.26
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGATAGTGGCATCGATATTTGATTTCA
Found at i:46170187 original size:29 final size:28
Alignment explanation
Indices: 46170151--46170211 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
46170141 CATCTCATTC
46170151 ATATGGCCCATCAGACCCAAATCACCTTT
1 ATATGGCCCATCAGACCCAAATCACC-TT
* * *
46170180 ATATGGCCCGTTAGGCCCAAATCACCTT
1 ATATGGCCCATCAGACCCAAATCACCTT
46170208 ATAT
1 ATAT
46170212 TCATGCTCAC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 6 0.21
29 23 0.79
ACGTcount: A:0.30, C:0.31, G:0.13, T:0.26
Consensus pattern (28 bp):
ATATGGCCCATCAGACCCAAATCACCTT
Found at i:46174561 original size:25 final size:25
Alignment explanation
Indices: 46174508--46174561 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
46174498 GCTAGACCAG
* **
46174508 ACTGGTCAAGTCGTCATTGACCCTG
1 ACTGGTCAAGTCGTAATTGACCCAA
* *
46174533 ACTGGTCAGGTCGTAATTGTCCCAA
1 ACTGGTCAAGTCGTAATTGACCCAA
46174558 ACTG
1 ACTG
46174562 AACCAGCTCG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (25 bp):
ACTGGTCAAGTCGTAATTGACCCAA
Found at i:46176216 original size:43 final size:42
Alignment explanation
Indices: 46176114--46176226 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 42
46176104 AATTAAGAAG
*
46176114 TCCAAGCTCGTTGAGTGGTCCCG-GTTCATGATATATGTAGCA
1 TCCAAGCTCATTGAGTGGT-CCGAGTTCATGATATATGTAGCA
* * *
46176156 TCCGAGCTCATTAAGTGGTCCGAGTTCATTATGGATATG-AGCA
1 TCCAAGCTCATTGAGTGGTCCGAGTTCATGAT--ATATGTAGCA
* *
46176199 TCCAAGCTCTTTGAGTGGTCTGAGTTCA
1 TCCAAGCTCATTGAGTGGTCCGAGTTCA
46176227 CAATGGATGC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
41 3 0.05
42 24 0.40
43 28 0.47
44 5 0.08
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (42 bp):
TCCAAGCTCATTGAGTGGTCCGAGTTCATGATATATGTAGCA
Found at i:46184912 original size:2 final size:2
Alignment explanation
Indices: 46184907--46184934 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
46184897 TTAAAAAAAA
46184907 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46184935 TTCGTAATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:46185210 original size:7 final size:7
Alignment explanation
Indices: 46185198--46185222 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
46185188 CTGCAAATTT
46185198 AAAAATA
1 AAAAATA
46185205 AAAAATA
1 AAAAATA
46185212 AAAAATA
1 AAAAATA
46185219 AAAA
1 AAAA
46185223 TACCTCTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:46186443 original size:12 final size:12
Alignment explanation
Indices: 46186428--46186457 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
46186418 AATAATTAAA
46186428 TAAATTGGAAAT
1 TAAATTGGAAAT
46186440 TAAATTGGAAAT
1 TAAATTGGAAAT
46186452 TAAATT
1 TAAATT
46186458 CGGATTTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (12 bp):
TAAATTGGAAAT
Found at i:46193106 original size:42 final size:41
Alignment explanation
Indices: 46193046--46193198 Score: 191
Period size: 42 Copynumber: 3.7 Consensus size: 41
46193036 TACCATACCA
*
46193046 ATGCCATATCCCAGATATGGTCTTACAAGTAATCTCATATCG
1 ATGCCAAATCCCAGATATGGTCTTACAAG-AATCTCATATCG
*
46193088 ATGCCAAATCCCATATATGGTCTTAGACAA-AATCTCATATCG
1 ATGCCAAATCCCAGATATGGTCTT--ACAAGAATCTCATATCG
* * * *
46193130 ACGCCAAATCCCATATATGGTCTTACATGAAATCTCATATTG
1 ATGCCAAATCCCAGATATGGTCTTACAAG-AATCTCATATCG
* *
46193172 ATGTCATATCCCAGATATGGTCTTACA
1 ATGCCAAATCCCAGATATGGTCTTACA
46193199 CACAGACTAA
Statistics
Matches: 98, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
40 3 0.03
42 91 0.93
44 4 0.04
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.31
Consensus pattern (41 bp):
ATGCCAAATCCCAGATATGGTCTTACAAGAATCTCATATCG
Found at i:46199603 original size:15 final size:15
Alignment explanation
Indices: 46199583--46199638 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
46199573 GTATCTTGGG
46199583 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
46199598 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
46199613 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
46199628 TTTCTTTATTC
1 TTTCTTTATTC
46199639 AGTTTTCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 2 0.06
15 31 0.89
16 2 0.06
ACGTcount: A:0.11, C:0.16, G:0.12, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:46199613 original size:30 final size:30
Alignment explanation
Indices: 46199579--46199638 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
46199569 TATCGTATCT
*
46199579 TGGGTTTCTTTAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTCTATCT-TGGATTTCTTTATTC
46199609 TGGGTTTCTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTCTATCTTGGATTTCTTTATTC
46199639 AGTTTTCTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.10, C:0.15, G:0.17, T:0.58
Consensus pattern (30 bp):
TGGGTTTCTCTATCTTGGATTTCTTTATTC
Found at i:46202051 original size:46 final size:46
Alignment explanation
Indices: 46201996--46202176 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
46201986 TAGGATGGTT
46201996 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
46202042 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
46202088 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
46202135 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46202177 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:46202157 original size:93 final size:93
Alignment explanation
Indices: 46201998--46202168 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
46201988 GGATGGTTGA
* *
46201998 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
46202063 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
46202091 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
46202156 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
46202169 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:46205166 original size:48 final size:48
Alignment explanation
Indices: 46205090--46205305 Score: 220
Period size: 48 Copynumber: 4.5 Consensus size: 48
46205080 TGTGTAAGCC
* * *
46205090 AGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGTT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTATGAGAGCT
* * *** *
46205138 AGTGCAAGACCATGTCT-GAGACATGGCATCGGCCTCAATATGTGAGCT
1 AGTGTAAGACCATGTCTGGA-ACATGGCATCGGCATTGTTATGAGAGCT
* * * *
46205186 AGTGTAAGACTATATTTGGAACATGGCATCGGTATTGTTATGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTATGAGAGCT
* *** * *
46205234 AGTGTAAGACCATGTCTAGG-ACATGGCATCGGCCTCAATATGTGAGCC
1 AGTGTAAGACCATGTCT-GGAACATGGCATCGGCATTGTTATGAGAGCT
*
46205282 AGTGTAAGACCATGTTTGGAACAT
1 AGTGTAAGACCATGTCTGGAACAT
46205306 AAGACCATTT
Statistics
Matches: 134, Mismatches: 30, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
47 4 0.03
48 126 0.94
49 4 0.03
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTATGAGAGCT
Found at i:46205257 original size:96 final size:96
Alignment explanation
Indices: 46205086--46205305 Score: 361
Period size: 96 Copynumber: 2.3 Consensus size: 96
46205076 AGGTTGTGTA
*
46205086 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGTTAGTGCAAGACCAT
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGCAAGACCAT
46205151 GTCTGAGACATGGCATCGGCCTCAATATGTG
66 GTCTGAGACATGGCATCGGCCTCAATATGTG
* * * ** *
46205182 AGCTAGTGTAAGACTATATTTGGAACATGGCATCGGTATTGTTATGAGAGCTAGTGTAAGACCAT
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGCAAGACCAT
46205247 GTCT-AGGACATGGCATCGGCCTCAATATGTG
66 GTCTGA-GACATGGCATCGGCCTCAATATGTG
46205278 AGCCAGTGTAAGACCATGTTTGGAACAT
1 AGCCAGTGTAAGACCATGTTTGGAACAT
46205306 AAGACCATTT
Statistics
Matches: 113, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
95 1 0.01
96 112 0.99
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (96 bp):
AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGCAAGACCAT
GTCTGAGACATGGCATCGGCCTCAATATGTG
Found at i:46206809 original size:27 final size:28
Alignment explanation
Indices: 46206779--46206848 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
46206769 ATAATAAGTC
*
46206779 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
46206806 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
46206834 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46206849 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:46214727 original size:27 final size:28
Alignment explanation
Indices: 46214697--46214766 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
46214687 ATAATAAGTC
*
46214697 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
46214724 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
46214752 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46214767 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:46217719 original size:40 final size:40
Alignment explanation
Indices: 46217670--46217874 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
46217660 TCTTCGGAAT
* * *
46217670 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
46217709 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* **
46217749 TTAG-CC-GATATAA-CAACTCGCATGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
46217787 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
46217827 TTAGCCCGGAT-TAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
46217866 TTAGCCCGG
1 TTAGCCCGG
46217875 GTATCATTCA
Statistics
Matches: 141, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
38 28 0.20
39 44 0.31
40 68 0.48
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:46217795 original size:78 final size:79
Alignment explanation
Indices: 46217661--46217874 Score: 220
Period size: 78 Copynumber: 2.7 Consensus size: 79
46217651 AACCGAGCTT
* * * * * * * * **
46217661 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGAT-TAATCACTAGCATAAATGCCTTCGGGTCTTAGCCCGGATATAAT
*
46217725 AACTTGCACAAATGC
65 AACTAGCACAAATGC
* * *
46217740 CTTCGGGTCTTAG-CC-GATATAA-CAACTCGCATGAATGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGAT-TAATC-ACTAGCATAAATGCCTTCGGGTCTTAGCCCGGATATAA
* *
46217802 TCACTAGCATAAATGC
64 TAACTAGCACAAATGC
*
46217818 CTTCGGGACTTAGCCCGGATTAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGGATTAATCACTAGCATAAATGCCTTCGGGTCTTAGCCCGG
46217875 GTATCATTCA
Statistics
Matches: 112, Mismatches: 19, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
77 1 0.01
78 61 0.54
79 46 0.41
80 4 0.04
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATTAATCACTAGCATAAATGCCTTCGGGTCTTAGCCCGGATATAATA
ACTAGCACAAATGC
Found at i:46225759 original size:40 final size:40
Alignment explanation
Indices: 46225710--46225916 Score: 249
Period size: 40 Copynumber: 5.2 Consensus size: 40
46225700 TCTTCGGAAT
* * *
46225710 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
46225749 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
46225789 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
46225829 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
46225869 TTAGCCCGGATATAATCACTAGCATAAATGCCTTC-GGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
46225908 TTAGCCCGG
1 TTAGCCCGG
46225917 GTATCATTCA
Statistics
Matches: 145, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
39 16 0.11
40 128 0.88
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:46235834 original size:26 final size:26
Alignment explanation
Indices: 46235772--46235860 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 26
46235762 TTTTGTTTAC
* *
46235772 TAAAATTACCGAAATACC-CTTAGTTTG
1 TAAAATTACTGAAATACCTC-GA-TTTG
*
46235799 TAAAAATACTGAAATACCTCGATTTG
1 TAAAATTACTGAAATACCTCGATTTG
**
46235825 TAAAATTACTGAAATACCTTCGACGTG
1 TAAAATTACTGAAATACC-TCGATTTG
46235852 TAAAATTAC
1 TAAAATTAC
46235861 CAAAGTACCC
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
26 21 0.39
27 32 0.59
28 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.31
Consensus pattern (26 bp):
TAAAATTACTGAAATACCTCGATTTG
Found at i:46235977 original size:81 final size:80
Alignment explanation
Indices: 46235866--46236020 Score: 238
Period size: 81 Copynumber: 1.9 Consensus size: 80
46235856 ATTACCAAAG
* * *
46235866 TACCCCGATTTACAGAATTACCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCCCGATTT
1 TACCCCGACTTACAGAATTACCGTTTTACCCCCGATTTACAAAATTACCATTTTACCCCCGATTT
*
46235931 ACATAATTATCGTTT
66 ACAAAATTATCGTTT
* * *
46235946 TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
1 TACCC-CGACTTACAGAATTACCGTTTTACCCCCGATTTACAAAATTACCATTTTACCCCCGATT
46236011 TACAAAATTA
65 TACAAAATTA
46236021 CTAAAATACC
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
80 5 0.07
81 62 0.93
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.37
Consensus pattern (80 bp):
TACCCCGACTTACAGAATTACCGTTTTACCCCCGATTTACAAAATTACCATTTTACCCCCGATTT
ACAAAATTATCGTTT
Found at i:46236023 original size:27 final size:27
Alignment explanation
Indices: 46235866--46236021 Score: 215
Period size: 27 Copynumber: 5.8 Consensus size: 27
46235856 ATTACCAAAG
*
46235866 TACCC-CGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
46235892 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
46235919 TACCCCCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
46235946 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
**
46235973 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
46236000 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
46236022 TAAAATACCC
Statistics
Matches: 119, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
26 5 0.04
27 114 0.96
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:46236030 original size:27 final size:27
Alignment explanation
Indices: 46235853--46236167 Score: 143
Period size: 27 Copynumber: 11.7 Consensus size: 27
46235843 TTCGACGTGT
*
46235853 AAAATTACCAAAGTACCC-CGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* **** *
46235879 AGAATTACCGTTTTACCCCCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* **** *
46235906 ATAATTACCGTTTTACCCCCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* * **** *
46235933 ATAATTATCGTTTTACCCTCGACTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* ****
46235960 AGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* ***
46235987 AAAATTACTATTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* * * **
46236014 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
* *
46236041 AAAATTACCAAAATACCC-CTAGTTTAT
1 AAAATTACCAAAATACCCTCGA-TTTAC
* * * **
46236068 AAAATTACCAAAATGCCCTTGGTTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
* * * * **
46236095 GAAATTACCGAAATAGCCTCAATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
46236122 AAAATTACCAAAATACCC-CTGATTTAC
1 AAAATTACCAAAATACCCTC-GATTTAC
*
46236149 AAAGTTA-CAGAAATACCCT
1 AAAATTACCA-AAATACCCT
46236168 TGACTTTCTA
Statistics
Matches: 237, Mismatches: 46, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
26 16 0.07
27 221 0.93
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTAC
Found at i:46236031 original size:54 final size:54
Alignment explanation
Indices: 46235853--46236032 Score: 175
Period size: 54 Copynumber: 3.4 Consensus size: 54
46235843 TTCGACGTGT
* * * *
46235853 AAAATTACCAAAGTACCC-CGATTTACAGAATTACCGTTTTACCCCCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTAC
* *** * * *
46235906 ATAATTACCGTTTTACCCCCGATTTACATAATTA-TCGTTTTACCCTCGACTTAC
1 AAAATTACCAAATTACCCTCGATTTACAAAATTACT-GTTTTACCCTCGATTTAC
* *** *
46235960 AGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTAC
* *
46236014 AAAATTACTAAAATACCCT
1 AAAATTACCAAATTACCCT
46236033 TGGTTTGTAA
Statistics
Matches: 104, Mismatches: 20, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
53 13 0.12
54 90 0.87
55 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.34
Consensus pattern (54 bp):
AAAATTACCAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTAC
Found at i:46236031 original size:81 final size:81
Alignment explanation
Indices: 46235853--46236032 Score: 222
Period size: 81 Copynumber: 2.2 Consensus size: 81
46235843 TTCGACGTGT
* * * * *
46235853 AAAATTACCAAAGTACCC-CGATTTACAGAATTACCGTTTTACCCCCGATTTACATAATTACCGT
1 AAAATTACTAAAATACCCTCGACTTACAGAATTACCGTTTTACCCCCGATTTACAAAATTACCAT
46235917 TTTACCCCCGATTTAC
66 TTTACCCCCGATTTAC
* ** * *
46235933 ATAATTATCGT--TTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACT
1 AAAATTA-C-TAAAATACCCTCGACTTACAGAATTACCGTTTTACCCCCGATTTACAAAATTACC
*
46235996 ATTTTACCCTCGATTTAC
64 ATTTTACCCCCGATTTAC
46236014 AAAATTACTAAAATACCCT
1 AAAATTACTAAAATACCCT
46236033 TGGTTTGTAA
Statistics
Matches: 82, Mismatches: 13, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
79 1 0.01
80 12 0.15
81 69 0.84
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.34
Consensus pattern (81 bp):
AAAATTACTAAAATACCCTCGACTTACAGAATTACCGTTTTACCCCCGATTTACAAAATTACCAT
TTTACCCCCGATTTAC
Found at i:46236045 original size:54 final size:54
Alignment explanation
Indices: 46236000--46236139 Score: 158
Period size: 54 Copynumber: 2.6 Consensus size: 54
46235990 ATTACTATTT
*
46236000 TACCCTCGA-TTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCC-CGAGTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * * * *
46236054 TACCCCTAGTTTATAAAATTACCAAAATGCCCTTGGTTTGTGAAATTACCGAAA
1 TACCCCGAGTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * **
46236108 TAGCCTC-AATTTGTAAAATTACCAAAATACCC
1 TA-CCCCGAGTTTACAAAATTACCAAAATACCC
46236140 CTGATTTACA
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
53 2 0.03
54 69 0.93
55 3 0.04
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCCGAGTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
Found at i:46236217 original size:27 final size:27
Alignment explanation
Indices: 46236122--46236226 Score: 86
Period size: 27 Copynumber: 3.8 Consensus size: 27
46236112 CTCAATTTGT
** * **
46236122 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTGAAATACCCTTGGCTTAC
* * * *
46236149 AAAGTTACAGAAATACCCTTGACTTTC
1 AAAATTACTGAAATACCCTTGGCTTAC
*
46236176 TAAAAATTA-TAGAAATACCATTGGCTTAC
1 --AAAATTACT-GAAATACCCTTGGCTTAC
46236205 AAAATTACTGAAATACCCTTGG
1 AAAATTACTGAAATACCCTTGG
46236227 TTTGTAGATT
Statistics
Matches: 62, Mismatches: 12, Indels: 8
0.76 0.15 0.10
Matches are distributed among these distances:
27 40 0.65
28 1 0.02
29 21 0.34
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.29
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGCTTAC
Found at i:46236347 original size:27 final size:27
Alignment explanation
Indices: 46236270--46236347 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
46236260 AAATGACTAA
*
46236270 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTATAT-GGTAAAATGACCGT
* *
46236297 AA-AGCCCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCTATATGGTAAAATGACCGT
*
46236324 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTATATGGTAAAATGAC
46236348 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (27 bp):
AATACCCCTATATGGTAAAATGACCGT
Found at i:46237181 original size:26 final size:26
Alignment explanation
Indices: 46237152--46237265 Score: 183
Period size: 26 Copynumber: 4.4 Consensus size: 26
46237142 GAGGAAGTGC
46237152 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
46237178 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
46237204 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
46237230 AAAAGGGCTTATGCCCCAGGTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
46237256 AAAAGGGCTT
1 AAAAGGGCTT
46237266 TACCCTAGTT
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 83 1.00
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:46237479 original size:42 final size:42
Alignment explanation
Indices: 46237420--46237511 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
46237410 TAGTCTCCCC
* ** *
46237420 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
46237462 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
46237504 AAATGGGC
1 AAATGGGC
46237512 CTATGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:46237570 original size:31 final size:31
Alignment explanation
Indices: 46237535--46237613 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
46237525 CGTTTACAGT
46237535 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* * *
46237566 AAAGGCTTTGGCTCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
46237597 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
46237614 AATCGTTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:46245796 original size:56 final size:56
Alignment explanation
Indices: 46245736--46245870 Score: 209
Period size: 56 Copynumber: 2.4 Consensus size: 56
46245726 TCCCAGATAG
*
46245736 GGTCTTACTCACACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCACACACATATATCAAAATCACATATCGATGCCAACGTATTAAACGT
** *
46245792 GGTCTTACTCGTACACATATATCAAAATCACATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCACACACATATATCAAAATCACATATCGATGCCAACGTATTAAACGT
*
46245848 GGTCTTACT-AGCACACAAATATC
1 GGTCTTACTCA-CACACATATATC
46245871 GATGCTATGG
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
56 71 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCACACACATATATCAAAATCACATATCGATGCCAACGTATTAAACGT
Found at i:46252683 original size:56 final size:56
Alignment explanation
Indices: 46252621--46252811 Score: 301
Period size: 56 Copynumber: 3.4 Consensus size: 56
46252611 TCCCAGATAG
*
46252621 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCGACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* * * * *
46252677 GATCTTACTGGGACACATATATCAGAATCACATATCGATCCCAATGTATTAAACGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* **
46252733 GGTCTTACTCGCACACATATATCAAAATCACATATTAATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
46252789 GGTCTTACTCGCACACATATATC
1 GGTCTTACTCGCACACATATATC
46252812 GATGCCATGG
Statistics
Matches: 121, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 121 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:46253795 original size:23 final size:23
Alignment explanation
Indices: 46253757--46253814 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
46253747 ATTATTTTAC
46253757 AATTTT-AACC-TTTTAACTAAA
1 AATTTTAAACCATTTTAACTAAA
*
46253778 ATTTTTAAACCATTTTAACTAAA
1 AATTTTAAACCATTTTAACTAAA
46253801 AATTTTAAACCATT
1 AATTTTAAACCATT
46253815 ATAAGTCATG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 5 0.15
22 4 0.12
23 24 0.73
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (23 bp):
AATTTTAAACCATTTTAACTAAA
Found at i:46255064 original size:12 final size:12
Alignment explanation
Indices: 46255049--46255078 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
46255039 AATAATTAAA
46255049 TAAATTAGAAAT
1 TAAATTAGAAAT
*
46255061 TAAATTGGAAAT
1 TAAATTAGAAAT
46255073 TAAATT
1 TAAATT
46255079 TGGATTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.10, T:0.37
Consensus pattern (12 bp):
TAAATTAGAAAT
Found at i:46255918 original size:11 final size:11
Alignment explanation
Indices: 46255904--46255928 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
46255894 CATAAAATCA
46255904 AAATAAATAAT
1 AAATAAATAAT
46255915 AAATAAATAAT
1 AAATAAATAAT
46255926 AAA
1 AAA
46255929 ATAAGATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAATAAATAAT
Found at i:46259368 original size:66 final size:68
Alignment explanation
Indices: 46259292--46259478 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
46259282 TAGTACCACT
*
46259292 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
46259354 CACG
65 CACG
46259358 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
46259423 ATCACG
63 ATCACG
46259429 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
46259479 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:46259403 original size:71 final size:71
Alignment explanation
Indices: 46259315--46259478 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
46259305 CGATTTGTCT
46259315 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46259380 CTTTCA
66 CTTTCA
46259386 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46259451 CTTTCA
66 CTTTCA
46259457 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
46259479 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:46259516 original size:71 final size:70
Alignment explanation
Indices: 46259315--46259512 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
46259305 CGATTTGTCT
* * *
46259315 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
46259380 CTTTCA
65 CTTTCA
* * *
46259386 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
46259451 CTTTCA
65 CTTTCA
* *
46259457 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
46259513 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:46261603 original size:27 final size:28
Alignment explanation
Indices: 46261578--46261789 Score: 190
Period size: 27 Copynumber: 7.9 Consensus size: 28
46261568 TTATTTGATC
* *
46261578 GTAATGCCCCTGTAGGGTAAAATGATC-
1 GTAATACCCCTGTAGGGTAAAATGAACT
* * * *
46261605 GTAATGCCCTTGAAGGGTAAAATG-ACC
1 GTAATACCCCTGTAGGGTAAAATGAACT
* * *
46261632 G-AATACCCTTATGGGGTAAAAT-AACT
1 GTAATACCCCTGTAGGGTAAAATGAACT
*
46261658 GTAATACCCCTGTAGGCTAAAAT-AACT
1 GTAATACCCCTGTAGGGTAAAATGAACT
*
46261685 GTAATA-CCCTGTAAGGTAAAAT-AACT
1 GTAATACCCCTGTAGGGTAAAATGAACT
* * *
46261711 GAAATGCCCCTGTAGGGTTAAATG-ACT
1 GTAATACCCCTGTAGGGTAAAATGAACT
* *
46261738 GTAATACCCTTGTAGGGTAAAATG-ACC
1 GTAATACCCCTGTAGGGTAAAATGAACT
* * *
46261765 GTGATACCCCTGTATGGCAAAATGA
1 GTAATACCCCTGTAGGGTAAAATGA
46261790 CGAGTAGCCC
Statistics
Matches: 152, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
26 43 0.28
27 109 0.72
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.25
Consensus pattern (28 bp):
GTAATACCCCTGTAGGGTAAAATGAACT
Found at i:46261679 original size:53 final size:53
Alignment explanation
Indices: 46261622--46261790 Score: 182
Period size: 53 Copynumber: 3.2 Consensus size: 53
46261612 CCTTGAAGGG
*
46261622 TAAAATGACCG-AATACCCTTATGGGGTAAAATAACTGTAATACCCCTGTAGGC
1 TAAAATGACTGTAATACCCTTAT-GGGTAAAATAACTGTAATACCCCTGTAGGC
* * * * *
46261675 TAAAATAACTGTAATACCCTGTA-AGGTAAAATAACTGAAATGCCCCTGTAGGG
1 TAAAATGACTGTAATACCCT-TATGGGTAAAATAACTGTAATACCCCTGTAGGC
* * * * *
46261728 TTAAATGACTGTAATACCCTTGTAGGGTAAAATGACCGTGATACCCCTGTATGGC
1 TAAAATGACTGTAATACCCTTAT-GGGTAAAATAACTGTAATACCCCTGTA-GGC
46261783 -AAAATGAC
1 TAAAATGAC
46261791 GAGTAGCCCT
Statistics
Matches: 94, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
52 1 0.01
53 53 0.56
54 36 0.38
55 4 0.04
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (53 bp):
TAAAATGACTGTAATACCCTTATGGGTAAAATAACTGTAATACCCCTGTAGGC
Found at i:46261994 original size:27 final size:26
Alignment explanation
Indices: 46261927--46262004 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
46261917 ATGGAGGAAG
* **
46261927 TACTGTACTGGTGACTATATCAC-AT
1 TACTGTACTGGTGGCTATGCCACAAT
46261952 TCACTGTTACTGGTGGCTATGCCACAAT
1 T-ACTG-TACTGGTGGCTATGCCACAAT
*
46261980 TACTGATACTGGTGGCTTTGCCACA
1 TACTG-TACTGGTGGCTATGCCACA
46262005 TTAACTATTT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
25 1 0.02
26 4 0.09
27 37 0.82
28 3 0.07
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (26 bp):
TACTGTACTGGTGGCTATGCCACAAT
Found at i:46265255 original size:21 final size:20
Alignment explanation
Indices: 46265223--46265266 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
46265213 GTTTTCAGTA
*
46265223 CAGTCTATCTATAGTAGTCT
1 CAGTCTACCTATAGTAGTCT
*
46265243 CAGTACTACCTATAGTAGTTT
1 CAGT-CTACCTATAGTAGTCT
46265264 CAG
1 CAG
46265267 GTTCTAGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.36
Consensus pattern (20 bp):
CAGTCTACCTATAGTAGTCT
Found at i:46266739 original size:12 final size:12
Alignment explanation
Indices: 46266722--46266753 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
46266712 CGTGTTATGG
46266722 CACACGGCCTAC
1 CACACGGCCTAC
46266734 CACACGGCCTAC
1 CACACGGCCTAC
46266746 CACACGGC
1 CACACGGC
46266754 TGTGTGGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.25, C:0.50, G:0.19, T:0.06
Consensus pattern (12 bp):
CACACGGCCTAC
Found at i:46268272 original size:25 final size:26
Alignment explanation
Indices: 46268244--46268307 Score: 80
Period size: 24 Copynumber: 2.6 Consensus size: 26
46268234 TAGCTCTTCT
* *
46268244 GAGCATCCC-ATTACTTGGCTCTCAC
1 GAGCTTCCCGATTACTTGGCTCACAC
*
46268269 GAGCTTCCCGA-TA-TTGGCTCACAT
1 GAGCTTCCCGATTACTTGGCTCACAC
46268293 GAGCTTCCCGATTAC
1 GAGCTTCCCGATTAC
46268308 GGCTCTTATG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
24 20 0.61
25 12 0.36
26 1 0.03
ACGTcount: A:0.20, C:0.33, G:0.19, T:0.28
Consensus pattern (26 bp):
GAGCTTCCCGATTACTTGGCTCACAC
Found at i:46268311 original size:24 final size:24
Alignment explanation
Indices: 46268243--46268322 Score: 74
Period size: 24 Copynumber: 3.3 Consensus size: 24
46268233 TTAGCTCTTC
*
46268243 TGAGCATCCC-ATTACTTGGCTCTCA
1 TGAGCTTCCCGATTAC--GGCTCTCA
* * *
46268268 CGAGCTTCCCGA-TATTGGCTCACA
1 TGAGCTTCCCGATTA-CGGCTCTCA
*
46268292 TGAGCTTCCCGATTACGGCTCTTA
1 TGAGCTTCCCGATTACGGCTCTCA
46268316 TGAGCTT
1 TGAGCTT
46268323 TCAGATTAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
24 31 0.70
25 12 0.27
26 1 0.02
ACGTcount: A:0.19, C:0.30, G:0.20, T:0.31
Consensus pattern (24 bp):
TGAGCTTCCCGATTACGGCTCTCA
Found at i:46268329 original size:24 final size:25
Alignment explanation
Indices: 46268291--46268349 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
46268281 ATTGGCTCAC
*
46268291 ATGAGCTTCCCGATT-ACGGCTCTT
1 ATGAGCTTCCAGATTAACGGCTCTT
* *
46268315 ATGAGCTTTCAGATTAATGGCTCTT
1 ATGAGCTTCCAGATTAACGGCTCTT
46268340 -TGAAGCTTCC
1 ATG-AGCTTCC
46268350 TGATATTTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 15 0.52
25 14 0.48
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (25 bp):
ATGAGCTTCCAGATTAACGGCTCTT
Found at i:46268460 original size:25 final size:24
Alignment explanation
Indices: 46268365--46268461 Score: 59
Period size: 25 Copynumber: 3.9 Consensus size: 24
46268355 TTTGGTCTTT
* * * **
46268365 TGAGCTTCCCGTTTATGGCTCGGA
1 TGAGCTTCTCATTAATGGCTCACA
* * *
46268389 TGAGCTTCTTAATAATTGGCTCGCA
1 TGAGCTTCTCATTAA-TGGCTCACA
* * * *
46268414 AGAGCTTCCCGTTATATAGCTCACA
1 TGAGCTTCTCATTA-ATGGCTCACA
46268439 TGAGCTTCTCATTACATGGCTCA
1 TGAGCTTCTCATTA-ATGGCTCA
46268462 AAAGATCTTC
Statistics
Matches: 53, Mismatches: 18, Indels: 3
0.72 0.24 0.04
Matches are distributed among these distances:
24 10 0.19
25 42 0.79
26 1 0.02
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.33
Consensus pattern (24 bp):
TGAGCTTCTCATTAATGGCTCACA
Found at i:46268472 original size:50 final size:49
Alignment explanation
Indices: 46268366--46268473 Score: 119
Period size: 50 Copynumber: 2.2 Consensus size: 49
46268356 TTGGTCTTTT
* ** * **
46268366 GAGCTTCCCGTTTATGGCTCGGATGAGCTTCTTAATAATTGGCTCGCAA
1 GAGCTTCCCGTTTATAGCTCACATGAGCTTCTCAATAATTGGCTCAAAA
*
46268415 GAGCTTCCCGTTATATAGCTCACATGAGCTTCTCATTACA-TGGCTCAAAA
1 GAGCTTCCCGTT-TATAGCTCACATGAGCTTCTCAATA-ATTGGCTCAAAA
*
46268465 GATCTTCCC
1 GAGCTTCCC
46268474 AATTACATGC
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
49 12 0.24
50 36 0.73
51 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.31
Consensus pattern (49 bp):
GAGCTTCCCGTTTATAGCTCACATGAGCTTCTCAATAATTGGCTCAAAA
Found at i:46277533 original size:28 final size:27
Alignment explanation
Indices: 46277470--46277539 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
46277460 ATAGTGAGTC
46277470 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
46277497 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
46277525 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46277540 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:46280425 original size:50 final size:47
Alignment explanation
Indices: 46280359--46280682 Score: 243
Period size: 46 Copynumber: 6.8 Consensus size: 47
46280349 TAAGGTATAG
*
46280359 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGATCTCACATATTC-A
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTAG--CTCACAT-CTCAA
* * *
46280409 TGCCGATGCCATGTCCCAGACATTTTCTTACACT-G-ACACCTCT-ATA
1 TGCCGATGCCATGTCCCAGACA-TGTCTTACACTAGCTCACATCTCA-A
* * * *
46280455 TGTGTCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGA
1 --TGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAA
* * * *
46280504 GGCTGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA
1 TGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAA
* * * *
46280550 TGTCGATGCCATGTCCTAGACATGATCTTACACTCGCTCTCA--T-AA
1 TGCCGATGCCATGTCCCAGACATG-TCTTACACTAGCTCACATCTCAA
* * * * * *
46280595 TGTGCCTGATG-CATGTCTCGGACATGTCCTATACTAGCTCTCGTCTCAA
1 --TGCC-GATGCCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAA
* * *
46280644 TGCCGATACCATGTCCCAGACATGGCCTTACACTGGCTC
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTC
46280683 TCATAATGTG
Statistics
Matches: 217, Mismatches: 39, Indels: 38
0.74 0.13 0.13
Matches are distributed among these distances:
45 3 0.01
46 60 0.28
47 60 0.28
48 53 0.24
49 9 0.04
50 31 0.14
51 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.18, T:0.29
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAA
Found at i:46280527 original size:46 final size:47
Alignment explanation
Indices: 46280362--46280686 Score: 215
Period size: 47 Copynumber: 6.8 Consensus size: 47
46280352 GGTATAGTGC
* * * *
46280362 CGATGCCATGTCCCAGACATGGTCTTACACTAGATCTCACATATTC-ATGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAG--CTCTCAT-CTCAAGGT
* *
46280412 CGATGCCATGTCCCAGACATTTTCTTACACT-GACAC-C-TCT-ATATGTGT
1 CGATGCCATGTCCCAGACA-TGTCTTACACTAG-CTCTCATCTCA-A-G-GT
* *
46280460 CGATGCCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGG-
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAAGGT
* *
46280506 CTGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGT
1 C-GATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGT
* * *
46280553 CGATGCCATGTCCTAGACATGATCTTACACTCGCTCTCA--T-AATGTGC
1 CGATGCCATGTCCCAGACATG-TCTTACACTAGCTCTCATCTCAA-G-GT
* * * * * * *
46280600 CTGATG-CATGTCTCGGACATGTCCTATACTAGCTCTCGTCTCAATGC
1 C-GATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGT
* * *
46280647 CGATACCATGTCCCAGACATGGCCTTACACTGGCTCTCAT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCAT
46280687 AATGTGGCCA
Statistics
Matches: 218, Mismatches: 34, Indels: 48
0.73 0.11 0.16
Matches are distributed among these distances:
45 3 0.01
46 58 0.27
47 62 0.28
48 59 0.27
49 7 0.03
50 28 0.13
51 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.30
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGT
Found at i:46280608 original size:94 final size:94
Alignment explanation
Indices: 46280362--46280725 Score: 359
Period size: 94 Copynumber: 3.8 Consensus size: 94
46280352 GGTATAGTGC
* * * *
46280362 CGATGCCATGTCCCAGACATGGTCTTACACTAGATCTCACATATTCATGCCGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCTCATAATCGTGCCGATG-CATGTCCCA
* *
46280427 GACATTTTCTTACACT-GACAC-C-TCT-ATATGTGT
63 GACA-TGTCTTACACTAG-CTCTCGTCTCA-A--TGT
* * *
46280460 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCGAGGCTGATGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATCG-TGCCGATGCATGTCCCAG
46280522 ACATGTCTTACACTAGCTCTCGTCTCAATGT
64 ACATGTCTTACACTAGCTCTCGTCTCAATGT
* * * * *
46280553 CGATGCCATGTCCTAGACATGATCTTACACTCGCTCTCATAAT-GTGCCTGATGCATGTCTCGGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGTGCC-GATGCATGTCCCAGA
* * *
46280617 CATGTCCTATACTAGCTCTCGTCTCAATGC
65 CATGTCTTACACTAGCTCTCGTCTCAATGT
* * * *
46280647 CGATACCATGTCCCAGACATGGCCTTACACTGGCTCTCATAAT-GTGGCCAATGCATGTCCCAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGT-GCCGATGCATGTCCCAGA
*
46280711 TATGTCTTACACTAG
65 CATGTCTTACACTAG
46280726 TAGACAAATA
Statistics
Matches: 224, Mismatches: 31, Indels: 26
0.80 0.11 0.09
Matches are distributed among these distances:
93 36 0.16
94 136 0.61
95 20 0.09
96 2 0.01
97 10 0.04
98 20 0.09
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGTGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCTCTCGTCTCAATGT
Found at i:46280610 original size:47 final size:46
Alignment explanation
Indices: 46280363--46280725 Score: 171
Period size: 47 Copynumber: 7.7 Consensus size: 46
46280353 GTATAGTGCC
*
46280363 GATGCCATGTCCCAGACATGGTCTTACACTAGATCTC-A-CATAT-TCAT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGATCA-ATGTC-T
* * * *
46280410 GCCGATGCCATGTCCCAGACATTTTCTTACACT-GACACCTCTAT--ATGTGT
1 ---GATG-CATGTCCCAGACA-TGTCTTACACTAG-C-TCTCGATCAATGTCT
* * *
46280460 CGATGCCATGTCCCAGACATGTCTTACACTGGCT-TAC-ATCTCGA-GGCT
1 -GATG-CATGTCCCAGACATGTCTTACACTAGCTCT-CGA--TCAATGTCT
*
46280508 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGTC-
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCG-ATCAATGTCT
* *
46280554 GATGCCATGTCCTAGACATGATCTTACACTCGCTCTC-AT-AATGTGCCT
1 GATG-CATGTCCCAGACATG-TCTTACACTAGCTCTCGATCAATGT--CT
* * * * * *
46280602 GATGCATGTCTCGGACATGTCCTATACTAGCTCTCGTCTCAATG-CC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCG-ATCAATGTCT
* * * *
46280648 GATACCATGTCCCAGACATGGCCTTACACTGGCTCTC-AT-AATGTGGCC
1 GAT-GCATGTCCCAGACAT-GTCTTACACTAGCTCTCGATCAATGT--CT
* **
46280696 AATGCATGTCCCAGGTATGTCTTACACTAG
1 GATGCATGTCCCAGACATGTCTTACACTAG
46280726 TAGACAAATA
Statistics
Matches: 247, Mismatches: 37, Indels: 62
0.71 0.11 0.18
Matches are distributed among these distances:
45 11 0.04
46 65 0.26
47 70 0.28
48 59 0.24
49 6 0.02
50 30 0.12
51 5 0.02
52 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGATCAATGTCT
Found at i:46280657 original size:141 final size:142
Alignment explanation
Indices: 46280359--46280687 Score: 339
Period size: 141 Copynumber: 2.3 Consensus size: 142
46280349 TAAGGTATAG
* *
46280359 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGATCTCACATATTCATGCCGATGCCATGTC
1 TGCCGAT-CCATGTCCCAGACATGGTCTTACACTAG--CTCTCATACTCATGCCGATGCCATGTC
** * *
46280424 CCAGACATTTTCTTACACTGACACCTCTATATGTGTCGATGCCATGTCCCAGACATGTCTTACAC
63 CCAGACATGATCTTACACTGACACCTCTATATGTGCCGATGCCATGTCCCAGACATGTCCTACAC
* *
46280489 TGGCTTACATCTCGA
128 TAGCTTACATCTCAA
* * * * * *
46280504 GGCTGATGCATGTCCCAGACAT-GTCTTACACTAGCTCTCGT-CTCAATGTCGATGCCATGTCCT
1 TGCCGATCCATGTCCCAGACATGGTCTTACACTAGCTCTCATACTC-ATGCCGATGCCATGTCCC
* * * *
46280567 AGACATGATCTTACACT--C-GCTCTCATAATGTGCCTGATG-CATGTCTCGGACATGTCCTATA
65 AGACATGATCTTACACTGACACCTCT-AT-ATGTGCC-GATGCCATGTCCCAGACATGTCCTACA
*
46280628 CTAGCTCT-CGTCTCAA
127 CTAGCT-TACATCTCAA
* *
46280644 TGCCGATACCATGTCCCAGACATGGCCTTACACTGGCTCTCATA
1 TGCCGAT-CCATGTCCCAGACATGGTCTTACACTAGCTCTCATA
46280688 ATGTGGCCAA
Statistics
Matches: 151, Mismatches: 25, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
138 4 0.03
139 3 0.02
140 42 0.28
141 55 0.36
142 16 0.11
143 12 0.08
144 14 0.09
145 5 0.03
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.29
Consensus pattern (142 bp):
TGCCGATCCATGTCCCAGACATGGTCTTACACTAGCTCTCATACTCATGCCGATGCCATGTCCCA
GACATGATCTTACACTGACACCTCTATATGTGCCGATGCCATGTCCCAGACATGTCCTACACTAG
CTTACATCTCAA
Found at i:46282857 original size:56 final size:56
Alignment explanation
Indices: 46282767--46282879 Score: 208
Period size: 56 Copynumber: 2.0 Consensus size: 56
46282757 AAACCACAAG
*
46282767 GTAAACTTTGGATCTCTATTCGAAATAATCGACAAGGGCACTCCATGAAGTCTAAT
1 GTAAACTTTGGATCTATATTCGAAATAATCGACAAGGGCACTCCATGAAGTCTAAT
*
46282823 GTAAACTTTGGATCTATATTCGAAATAATTGACAAGGGCACTCCATGAAGTCTAAT
1 GTAAACTTTGGATCTATATTCGAAATAATCGACAAGGGCACTCCATGAAGTCTAAT
46282879 G
1 G
46282880 ATCTCAGAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.29
Consensus pattern (56 bp):
GTAAACTTTGGATCTATATTCGAAATAATCGACAAGGGCACTCCATGAAGTCTAAT
Found at i:46288313 original size:45 final size:46
Alignment explanation
Indices: 46288138--46288537 Score: 181
Period size: 48 Copynumber: 8.5 Consensus size: 46
46288128 AGGCTGACGC
* * * * *
46288138 CATGTCCCTGACATGGTCTTACACTAGCTCTCACATATCTATACCAATG
1 CATGTCCCAGACAT-GTCTTACACTAGCT-T-ACATCTCGAGACCGATG
* * *
46288187 TCATGTCCCAGACATGGTCTTACA-TTGAC--ACCTCTATACGTG-CCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAG-CTTACATC--T-CGAGACCGATG
* * *
46288235 CCATGTCCCAGACACGGTCTTACACT-GAC--ACATCTTGCA-ACCGGTG
1 -CATGTCCCAGACA-TGTCTTACACTAG-CTTACATCTCG-AGACCGATG
* *
46288281 CATGT-CCTGACATGTCTTACACTAGCTTACATCTCGAGTCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGACCGATG
* * *
46288326 CATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATACCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TACATCTCGAGACCGATG
* * *
46288372 CCATGTCCCAGACATGGTCTTACACTCGCTCT-CATAAT-GTG-CACGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-CTCGAGAC-CGATG
* * ** *
46288420 CATGTCCTAGACATGTCTTATACTAGCTCT-TGTCTC-ATTG-CCGATTT
1 CATGTCCCAGACATGTCTTACACTAGCT-TACATCTCGA--GACCGA-TG
* *
46288467 CATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT--ATGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-CTCGA-GACCGATG
*
46288514 CATGTCTCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
46288538 TGCACACAAA
Statistics
Matches: 280, Mismatches: 45, Indels: 54
0.74 0.12 0.14
Matches are distributed among these distances:
43 11 0.04
44 8 0.03
45 24 0.09
46 70 0.25
47 61 0.22
48 77 0.28
49 6 0.02
50 23 0.08
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGACCGATG
Found at i:46288403 original size:48 final size:47
Alignment explanation
Indices: 46288033--46288537 Score: 293
Period size: 47 Copynumber: 10.7 Consensus size: 47
46288023 TAGGGTATAG
* *
46288033 TGCCGATGCCATGTCCTAGACATGGTTTTACACTAGCTCATC-CATCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCTC-TCAA
* * * ** *
46288081 -GTCGATGCCATGTCCCAGACATGGTCATACACT-GACTATCGAAATCGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTC--TCTCAA
* * * * * *
46288129 GGCTGACGCCATGTCCCTGACATGGTCTTACACTAGCTCTCACATATCTA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--C-TCTCAA
* * * * *
46288179 TACCAATGTCATGTCCCAGACATGGTCTTACA-TTGACAC-CTCT-ATA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCTCTCA-A
* *
46288225 CGTGCCGATGCCATGTCCCAGACACGGTCTTACACT-GACACATCT-TGCAA
1 --TGCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTC-TCTCT-CAA
* * *
46288275 --CCGGTG-CATGT-CCTGACAT-GTCTTACACTAGCT-TACATCTCGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-C-TCTCAA
46288318 -GTCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAA
1 TG-CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-TCTCAA
* * *
46288364 TACCGATGCCATGTCCCAGACATGGTCTTACACTCGCTCTC-AT-AA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTCTCAA
* * * *
46288409 TGTGCACGATG-CATGTCCTAGACAT-GTCTTATACTAGCTCTTGTCTCAT
1 --TGC-CGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCTCTCAA
** * *
46288458 TGCCGATTTCATGTCCCAGACATGGTCTTACACTAGCTCTC-ATAATA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTCTCA-A
*
46288505 TGGCCGATG-CATGTCTCAGACAT-GTCTTACACT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACT
46288538 TGCACACAAA
Statistics
Matches: 361, Mismatches: 58, Indels: 78
0.73 0.12 0.16
Matches are distributed among these distances:
41 1 0.00
42 1 0.00
43 14 0.04
44 8 0.02
45 17 0.05
46 74 0.20
47 94 0.26
48 78 0.22
49 36 0.10
50 36 0.10
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTCTCAA
Found at i:46288419 original size:94 final size:93
Alignment explanation
Indices: 46288032--46288537 Score: 366
Period size: 94 Copynumber: 5.4 Consensus size: 93
46288022 ATAGGGTATA
* *
46288032 GTGCCGATGCCATGTCCTAGACATGGTTTTACACTAGCTCATC-CATCAAGT--CGATGCCATGT
1 GTGCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTC-TCTC-TCAA-TACCGATGCCATGT
* *
46288094 CCCAGACATGGTCATACACT-GACTATCGA-AAT
62 CCCAGACATGGTCTTACACTAG-CTCTC-ATAAT
* * * * * * * *
46288126 CGAGGCTGACGCCATGTCCCTGACATGGTCTTACACTAGCTCTCACATATCTATACCAATGTCAT
1 -G-TGCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCT--C-TCTCAATACCGATGCCAT
* * *
46288191 GTCCCAGACATGGTCTTACA-TTGACACCTC-TATAC
60 GTCCCAGACATGGTCTTACACTAG-C-TCTCATA-AT
* * *
46288226 GTGCCGATGCCATGTCCCAGACACGGTCTTACACT-GACACATCT-TGC-A-ACCGGTG-CATGT
1 GTGCCGATGCCATGTCCCAGACA-TGTCTTACACTAG-CTC-TCTCT-CAATACCGATGCCATGT
* *
46288286 -CCTGACAT-GTCTTACACTAGCT-TACAT-CT
62 CCCAGACATGGTCTTACACTAGCTCT-CATAAT
*
46288315 CGAGTCCGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATACCGATGCCATGTC
1 -GTG-CCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTC-TCTCAATACCGATGCCATGTC
*
46288379 CCAGACATGGTCTTACACTCGCTCTCATAAT
63 CCAGACATGGTCTTACACTAGCTCTCATAAT
* * * * * **
46288410 GTGCACGATG-CATGTCCTAGACATGTCTTATACTAGCTCTTGTCTCATTGCCGATTTCATGTCC
1 GTGC-CGATGCCATGTCCCAGACATGTCTTACACTAGCTC-TCTCTCAATACCGATGCCATGTCC
46288474 CAGACATGGTCTTACACTAGCTCTCATAAT
64 CAGACATGGTCTTACACTAGCTCTCATAAT
* *
46288504 ATGGCCGATG-CATGTCTCAGACATGTCTTACACT
1 GT-GCCGATGCCATGTCCCAGACATGTCTTACACT
46288538 TGCACACAAA
Statistics
Matches: 331, Mismatches: 47, Indels: 67
0.74 0.11 0.15
Matches are distributed among these distances:
88 2 0.01
89 15 0.05
90 19 0.06
91 22 0.07
92 14 0.04
93 13 0.04
94 129 0.39
95 9 0.03
96 35 0.11
97 4 0.01
98 34 0.10
99 32 0.10
100 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (93 bp):
GTGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCTCTCAATACCGATGCCATGTCCCA
GACATGGTCTTACACTAGCTCTCATAAT
Found at i:46306907 original size:2 final size:2
Alignment explanation
Indices: 46306900--46306928 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
46306890 GAGACTAGTC
46306900 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
46306929 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:46310359 original size:24 final size:24
Alignment explanation
Indices: 46310324--46310372 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
46310314 CTTTGGACTT
*
46310324 AGTTTTTGTTTTTAAAGGAAATTG
1 AGTTTTTATTTTTAAAGGAAATTG
46310348 AGTTTTTATTTTTAAAGGAAATTG
1 AGTTTTTATTTTTAAAGGAAATTG
46310372 A
1 A
46310373 CATAGAGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (24 bp):
AGTTTTTATTTTTAAAGGAAATTG
Found at i:46311066 original size:13 final size:13
Alignment explanation
Indices: 46311030--46311067 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
46311020 TCCCCTTTCT
46311030 TTTCCTTTTCCCC
1 TTTCCTTTTCCCC
46311043 TTT-CTTCTTCCCC
1 TTTCCTT-TTCCCC
46311056 TTTCCTTTTCCC
1 TTTCCTTTTCCC
46311068 TCCGAACACT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 3 0.13
13 17 0.74
14 3 0.13
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (13 bp):
TTTCCTTTTCCCC
Found at i:46312555 original size:17 final size:16
Alignment explanation
Indices: 46312514--46312604 Score: 76
Period size: 17 Copynumber: 5.4 Consensus size: 16
46312504 GTCCATCTCC
*
46312514 TTTATTTTATTTTTAGCT
1 TTTATTTT-TTTTTA-TT
*
46312532 TTT-TTTTATTTTATT
1 TTTATTTTTTTTTATT
*
46312547 TCTTATTTTCTTTTTAGT
1 T-TTATTTT-TTTTTATT
46312565 TTTATTTTTTATTTATT
1 TTTATTTTTT-TTTATT
*
46312582 TTATATTTTTGTTTATT
1 TT-TATTTTTTTTTATT
*
46312599 GTTATT
1 TTTATT
46312605 AAACTTCTTT
Statistics
Matches: 61, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
15 2 0.03
16 13 0.21
17 29 0.48
18 17 0.28
ACGTcount: A:0.15, C:0.03, G:0.04, T:0.77
Consensus pattern (16 bp):
TTTATTTTTTTTTATT
Found at i:46312591 original size:24 final size:24
Alignment explanation
Indices: 46312540--46312591 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
46312530 CTTTTTTTTA
*
46312540 TTTTATTTCTTATTTTCTTTTTAG
1 TTTTATTTCTTATTTTCTTTATAG
* *
46312564 TTTTATTTTTTATTTAT-TTTATAT
1 TTTTATTTCTTATTT-TCTTTATAG
46312588 TTTT
1 TTTT
46312592 GTTTATTGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (24 bp):
TTTTATTTCTTATTTTCTTTATAG
Found at i:46313204 original size:17 final size:17
Alignment explanation
Indices: 46313182--46313216 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
46313172 TTTGTGAGAT
46313182 TTTGAGCCTTTAGAGCA
1 TTTGAGCCTTTAGAGCA
*
46313199 TTTGAGCCTTTATAGCA
1 TTTGAGCCTTTAGAGCA
46313216 T
1 T
46313217 ACATTCTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40
Consensus pattern (17 bp):
TTTGAGCCTTTAGAGCA
Found at i:46319218 original size:232 final size:237
Alignment explanation
Indices: 46318895--46319441 Score: 607
Period size: 239 Copynumber: 2.3 Consensus size: 237
46318885 ATATTATTAC
* * * ** * *
46318895 ATATATAACTATTATTATAACATAGATTATAATAAAAGGTATAGCATTTCATGATATTATAATGT
1 ATATAT-AC-ATTATTGTAATATAGATTATAACAAAAAATATAGTATTACATGATATTATAATGT
*
46318960 TTAA-CTATTAATACATATACATAAACTA-TAA-ATA-TAT-GATATGATATAATATAGTATTAT
64 TTAATCTATTAATACATATACATAAACTATTAATATATTATAGATATGATATAATATAGCATTAT
* * * *
46319020 ATAATATAGTAAGATGGCTAACGTTCAAATGTATGAAAAATATTG-GGACTTGGAGCATATTTCA
129 ATAATATAGTAAGAGGGCTAACGTTCAAATGTATGAAAAATATAGAGG-CTTAGAGCACATTTCA
* *
46319084 ACTAGTATAATAAT-A-AA-CAATAATATATAATGTACTACTATT
193 ACTAGTATAATAATAATAATAAATAATATATAATGTACTACCATT
*
46319126 ATATATGACCATTATTGTAATATAGATTATAACAAAATATTATAGTATTACATGATATTATAATG
1 ATATAT-A-CATTATTGTAATATAGATTATAACAAAA-AATATAGTATTACATGATATTATAATG
* * * * *
46319191 TTTAATC-ATTGATTCATATATATAAACTATTAATATATTATACACTATATGATATGATATAGCA
63 TTTAATCTATTAATACATATACATAAACTATTAATATATTAT--A-GATATGATATAATATAGCA
* * * * * * * *
46319255 TTATATACTATATTAGGAGGGTTAACTTTCAAATGTATGGAAAGTGTAGAGGCTTAGAGCACATT
125 TTATATAATATAGTAAGAGGGCTAACGTTCAAATGTATGAAAAATATAGAGGCTTAGAGCACATT
46319320 TCAACTAGTATAATAATAAATAATAAATAATATATAATGTACTACCATT
190 TCAACTAGTATAATAAT-AATAATAAATAATATATAATGTACTACCATT
* * *
46319369 ATATGTA-ATTA-TGATAATATAGATTATAATGGAAAGAATATAGTATTACATGATATTATAATG
1 ATATATACATTATTG-TAATATAGATTATAA--CAAAAAATATAGTATTACATGATATTATAATG
46319432 TTTAAT-TATT
63 TTTAATCTATT
46319442 CAGGAGGCAC
Statistics
Matches: 265, Mismatches: 32, Indels: 28
0.82 0.10 0.09
Matches are distributed among these distances:
231 31 0.12
232 48 0.18
233 4 0.02
234 3 0.01
235 3 0.01
239 85 0.32
240 21 0.08
241 36 0.14
242 6 0.02
243 28 0.11
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.38
Consensus pattern (237 bp):
ATATATACATTATTGTAATATAGATTATAACAAAAAATATAGTATTACATGATATTATAATGTTT
AATCTATTAATACATATACATAAACTATTAATATATTATAGATATGATATAATATAGCATTATAT
AATATAGTAAGAGGGCTAACGTTCAAATGTATGAAAAATATAGAGGCTTAGAGCACATTTCAACT
AGTATAATAATAATAATAAATAATATATAATGTACTACCATT
Found at i:46320164 original size:18 final size:17
Alignment explanation
Indices: 46320137--46320170 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
46320127 TTTAAATTTA
*
46320137 AAAATTAAAAATAAAGT
1 AAAATTAAAAAGAAAGT
46320154 AAAATTAAAAAAGAAAG
1 AAAATT-AAAAAGAAAG
46320171 AGTGAACGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.18
Consensus pattern (17 bp):
AAAATTAAAAAGAAAGT
Found at i:46322802 original size:21 final size:20
Alignment explanation
Indices: 46322743--46322802 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 20
46322733 AACAATTTTT
46322743 AAAAATATAAAAATATATTAAA
1 AAAAATATAAAAA-ATATT-AA
* *
46322765 AAATAATATATATAATATTAA
1 AAA-AATATAAAAAATATTAA
46322786 AAAAATTATAAAAAATA
1 AAAAA-TATAAAAAATA
46322803 ATAATTCATT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 2 0.06
21 14 0.44
22 8 0.25
23 8 0.25
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (20 bp):
AAAAATATAAAAAATATTAA
Found at i:46323430 original size:65 final size:65
Alignment explanation
Indices: 46323304--46323430 Score: 141
Period size: 65 Copynumber: 2.0 Consensus size: 65
46323294 TTTAAATGAA
* * * * ** *
46323304 TTTTGTTTTAAAAATAAATAAAATCAAGTAATTAATATATGATGTATGATGTTTTATCTTTTGGG
1 TTTTATTTGAAAAATAAATAAAATAAAGTAATTAAGATATGATGTATGATCCTTTACCTTTTGGG
* *
46323369 TTTTATTTGAAAAATAAATAAAATAAAGTATTTAAGATAT-ATTGTATTTATCCTTT-CCTTTT
1 TTTTATTTGAAAAATAAATAAAATAAAGTAATTAAGATATGA-TGTA-TGATCCTTTACCTTTT
46323431 TAACTAAATT
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
64 1 0.02
65 44 0.86
66 6 0.12
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.47
Consensus pattern (65 bp):
TTTTATTTGAAAAATAAATAAAATAAAGTAATTAAGATATGATGTATGATCCTTTACCTTTTGGG
Found at i:46324125 original size:55 final size:55
Alignment explanation
Indices: 46324066--46324186 Score: 134
Period size: 55 Copynumber: 2.2 Consensus size: 55
46324056 TGCTCTTTAG
* * * *
46324066 CCGTGGGCAACACTGACTCATCAACACGGCCATGGCACACACCCGTGCTGCCTGC
1 CCGTGGACAACACTGACTCATAAACACGGCCATGGCACACACCCGTGCGGCCTAC
* * ** ** *
46324121 CCGTGGACGACACTGTCTTTTAAACACGGCCATGGTGCACGCCCGTGCGGCCTAC
1 CCGTGGACAACACTGACTCATAAACACGGCCATGGCACACACCCGTGCGGCCTAC
*
46324176 CCGTGTACAAC
1 CCGTGGACAAC
46324187 TTTGAGCTAA
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.21, C:0.37, G:0.25, T:0.17
Consensus pattern (55 bp):
CCGTGGACAACACTGACTCATAAACACGGCCATGGCACACACCCGTGCGGCCTAC
Found at i:46326059 original size:48 final size:48
Alignment explanation
Indices: 46325996--46326100 Score: 210
Period size: 48 Copynumber: 2.2 Consensus size: 48
46325986 GTTCAAAGTA
46325996 TCCATTTCACAACACTTACCAATACGTCCCTTTCATCTTGAGTATTCC
1 TCCATTTCACAACACTTACCAATACGTCCCTTTCATCTTGAGTATTCC
46326044 TCCATTTCACAACACTTACCAATACGTCCCTTTCATCTTGAGTATTCC
1 TCCATTTCACAACACTTACCAATACGTCCCTTTCATCTTGAGTATTCC
46326092 TCCATTTCA
1 TCCATTTCA
46326101 GTAGAACTTT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 57 1.00
ACGTcount: A:0.25, C:0.33, G:0.06, T:0.36
Consensus pattern (48 bp):
TCCATTTCACAACACTTACCAATACGTCCCTTTCATCTTGAGTATTCC
Found at i:46326321 original size:93 final size:93
Alignment explanation
Indices: 46326208--46326378 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
46326198 GCCCATAAGT
* * *
46326208 GAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
46326273 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
46326301 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
46326366 CGAGTTCGGATGC
66 CGAGTTCGGATGC
46326379 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:46326394 original size:46 final size:46
Alignment explanation
Indices: 46326200--46326380 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
46326190 TGTAACCCGC
* * * *
46326200 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
46326246 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
46326296 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
46326339 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
46326381 AACCATCCTA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 71 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:46329569 original size:39 final size:39
Alignment explanation
Indices: 46329486--46329666 Score: 209
Period size: 39 Copynumber: 4.6 Consensus size: 39
46329476 ACAGGCTATA
* * * *
46329486 TGCTGGAATTATATCCGGGCTTAAAGACCCGCATGCTTCA
1 TGCTGGAATTATATCCGGACTT-AAGATCCGCAGGCTTCG
* *
46329526 TGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCG
1 TGCTGGAATTATATCCGGACTTAAGATCCGCAGGCTTCG
*
46329565 TGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCTTCG
1 TGCTGGAATTATATCCGGACTTAAGATCCGCAGGCTTCG
* * * *
46329604 TGTTGGTACTATATCCGGACTTAAGGTCCGCAGGCTTCG
1 TGCTGGAATTATATCCGGACTTAAGATCCGCAGGCTTCG
* * * * *
46329643 TACTGGTACTATATCTGGGCTTAA
1 TGCTGGAATTATATCCGGACTTAA
46329667 AGACCCATAG
Statistics
Matches: 125, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 105 0.84
40 20 0.16
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.30
Consensus pattern (39 bp):
TGCTGGAATTATATCCGGACTTAAGATCCGCAGGCTTCG
Found at i:46329632 original size:78 final size:79
Alignment explanation
Indices: 46329486--46329672 Score: 241
Period size: 78 Copynumber: 2.4 Consensus size: 79
46329476 ACAGGCTATA
* * * *
46329486 TGCTGGAATTATATCCGGGCTTAAAGACCCGCATGCTTCATGCTGGAATTGTATCCGGACTTAAG
1 TGCTGGAATTATATCCGGACTTAAAGACCCGCAGGCTTCATGCTGGAACTATATCCGGACTTAAG
46329551 GTCCGCAGGCTTCG
66 GTCCGCAGGCTTCG
* * * * *
46329565 TGCTGGAATTGTATCCGGACTT-AAGATCCGCAGGCTTCGTGTTGGTACTATATCCGGACTTAAG
1 TGCTGGAATTATATCCGGACTTAAAGACCCGCAGGCTTCATGCTGGAACTATATCCGGACTTAAG
46329629 GTCCGCAGGCTTCG
66 GTCCGCAGGCTTCG
* * * * *
46329643 TACTGGTACTATATCTGGGCTTAAAGACCC
1 TGCTGGAATTATATCCGGACTTAAAGACCC
46329673 ATAGGCTTTG
Statistics
Matches: 91, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 65 0.71
79 26 0.29
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (79 bp):
TGCTGGAATTATATCCGGACTTAAAGACCCGCAGGCTTCATGCTGGAACTATATCCGGACTTAAG
GTCCGCAGGCTTCG
Found at i:46331225 original size:43 final size:43
Alignment explanation
Indices: 46331164--46331248 Score: 161
Period size: 43 Copynumber: 2.0 Consensus size: 43
46331154 ATGTGAAAAG
46331164 AAAACTTTTAAATTGATTGAAATTTTACGGCACGATTTTTGTA
1 AAAACTTTTAAATTGATTGAAATTTTACGGCACGATTTTTGTA
*
46331207 AAAACTTTTAAATTGATTGAAATTTTACGGCACGGTTTTTGT
1 AAAACTTTTAAATTGATTGAAATTTTACGGCACGATTTTTGT
46331249 GTGATTGATT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.42
Consensus pattern (43 bp):
AAAACTTTTAAATTGATTGAAATTTTACGGCACGATTTTTGTA
Found at i:46332384 original size:60 final size:60
Alignment explanation
Indices: 46332287--46332426 Score: 212
Period size: 60 Copynumber: 2.3 Consensus size: 60
46332277 TGATGTTGGG
* *
46332287 ATTACCAGT-TCAGGCTAAATCCCTTATAACGACAAACACCCTTAATGA-GCTCGGATCTGA
1 ATTACCAGTCT-AGGCTAAATCCCTTATAACGAAAAACACCCTTAAT-ACGCTCGGATCTAA
46332347 ATTACCAGTCTAGGCTAAATCCCTTATAACGAAAAACACCCTTAATACGCTCGGATCTAA
1 ATTACCAGTCTAGGCTAAATCCCTTATAACGAAAAACACCCTTAATACGCTCGGATCTAA
* *
46332407 ATTACCAGTCCAGACTAAAT
1 ATTACCAGTCTAGGCTAAAT
46332427 TTAAACTCTA
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
59 1 0.01
60 72 0.97
61 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.25
Consensus pattern (60 bp):
ATTACCAGTCTAGGCTAAATCCCTTATAACGAAAAACACCCTTAATACGCTCGGATCTAA
Found at i:46337728 original size:19 final size:20
Alignment explanation
Indices: 46337685--46337731 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
46337675 ACCGTCAGTT
46337685 GAATAAGT--TAACGGTAAA
1 GAATAAGTACTAACGGTAAA
46337703 GAATAAGTACTAACGGTAAA
1 GAATAAGTACTAACGGTAAA
46337723 -AATAAGTAC
1 GAATAAGTAC
46337732 CCACTTTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.30
19 9 0.33
20 10 0.37
ACGTcount: A:0.51, C:0.09, G:0.19, T:0.21
Consensus pattern (20 bp):
GAATAAGTACTAACGGTAAA
Found at i:46340586 original size:58 final size:59
Alignment explanation
Indices: 46340514--46340624 Score: 179
Period size: 58 Copynumber: 1.9 Consensus size: 59
46340504 TTTTAAATGA
* *
46340514 GTTTTGTTTTAAAAATAAATAAAATCAAGTAATTAATATATGAT-TTTTTATCTTTTGG
1 GTTTTGTTTGAAAAATAAATAAAATAAAGTAATTAATATATGATATTTTTATCTTTTGG
* *
46340572 GTTTTGTTTGAAAAATAAATAAAATAAAGTATTTAATATATGTTATTTTTATC
1 GTTTTGTTTGAAAAATAAATAAAATAAAGTAATTAATATATGATATTTTTATC
46340625 CTTTCCTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
58 40 0.83
59 8 0.17
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.48
Consensus pattern (59 bp):
GTTTTGTTTGAAAAATAAATAAAATAAAGTAATTAATATATGATATTTTTATCTTTTGG
Found at i:46342725 original size:27 final size:27
Alignment explanation
Indices: 46342695--46342751 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
46342685 ATATTAATTC
46342695 ATTTTCACCACATTGGTAAGGTTACAT
1 ATTTTCACCACATTGGTAAGGTTACAT
46342722 ATTTTCACCACATTGGTAAGGTTACAT
1 ATTTTCACCACATTGGTAAGGTTACAT
46342749 ATT
1 ATT
46342752 CATACATCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (27 bp):
ATTTTCACCACATTGGTAAGGTTACAT
Found at i:46343232 original size:46 final size:46
Alignment explanation
Indices: 46343144--46343355 Score: 270
Period size: 46 Copynumber: 4.6 Consensus size: 46
46343134 GTACCAATTT
* *
46343144 CATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGAGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCGAGGCCGATG
46343189 CATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGGCCGATG
* * *
46343235 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCGATG
* * *
46343281 CCATGTCCCAGACATAGTCTTACACTGGCTCTCATAAT-GTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGCCGATG
*
46343329 CATGTCCCAGACATGTATTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
46343356 ACACAAATAA
Statistics
Matches: 148, Mismatches: 12, Indels: 13
0.86 0.07 0.08
Matches are distributed among these distances:
44 10 0.07
45 15 0.10
46 69 0.47
47 29 0.20
48 24 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCGATG
Found at i:46343329 original size:94 final size:90
Alignment explanation
Indices: 46343144--46343358 Score: 272
Period size: 94 Copynumber: 2.3 Consensus size: 90
46343134 GTACCAATTT
*
46343144 CATGTCCCAGACATGGTCTTACACTGACACATCTCGAGGCCGATGCATGTCCCAGACATGTCTTA
1 CATGTCCCAGACAT-GTCTTACACTGACACATCTCAAGGCCGATGCATGTCCCAGACATGTCTTA
*
46343209 CACTGGCTTACATCTCGAGGCCGATG
65 CACTGGCTTACATATCGAGGCCGATG
* * *
46343235 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGACATAGTC
1 CATGTCCCAGACATGTCTTACACT-G-ACACATCTCAAGGCCGATG-CATGTCCCAGACAT-GTC
* *
46343300 TTACACTGGCTCT-CATAAT-GTGGCTGATG
62 TTACACTGGCT-TACAT-ATCGAGGCCGATG
* *
46343329 CATGTCCCAGACATGTATTACACTGGCACA
1 CATGTCCCAGACATGTCTTACACTGACACA
46343359 CAAATAACCC
Statistics
Matches: 108, Mismatches: 10, Indels: 11
0.84 0.08 0.09
Matches are distributed among these distances:
90 10 0.09
91 15 0.14
92 18 0.17
93 15 0.14
94 48 0.44
95 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (90 bp):
CATGTCCCAGACATGTCTTACACTGACACATCTCAAGGCCGATGCATGTCCCAGACATGTCTTAC
ACTGGCTTACATATCGAGGCCGATG
Done.