Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 156 of 325
Found at i:47790243 original size:27 final size:27
Alignment explanation
Indices: 47790206--47790287 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
47790196 ATCTCTATTC
*
47790206 AAGACAGTCCTGACAGACTTCCACATT
1 AAGACAATCCTGACAGACTTCCACATT
* ** * *
47790233 AAGATAATCCTGATGGACATCCCCATTT
1 AAGACAATCCTGACAGACTTCCACA-TT
*
47790261 AAGACAATCCTGACAAACTTCCACATT
1 AAGACAATCCTGACAGACTTCCACATT
47790288 TACGGTAATG
Statistics
Matches: 42, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
27 21 0.50
28 21 0.50
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.24
Consensus pattern (27 bp):
AAGACAATCCTGACAGACTTCCACATT
Found at i:47790250 original size:55 final size:57
Alignment explanation
Indices: 47790162--47790287 Score: 168
Period size: 55 Copynumber: 2.3 Consensus size: 57
47790152 TGGTGGACTC
* * * * *
47790162 ACAGATTTCCAC-TTACATGATAGTCCTGATGGACATCTCTATTCAAGACAGTCCTG
1 ACAGACTTCCACATTACATGATAATCCTGATGGACATCCCCATTCAAGACAATCCTG
*
47790218 ACAGACTTCCACATTA-A-GATAATCCTGATGGACATCCCCATTTAAGACAATCCTG
1 ACAGACTTCCACATTACATGATAATCCTGATGGACATCCCCATTCAAGACAATCCTG
*
47790273 ACAAACTTCCACATT
1 ACAGACTTCCACATT
47790288 TACGGTAATG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
55 47 0.76
56 12 0.19
57 3 0.05
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.28
Consensus pattern (57 bp):
ACAGACTTCCACATTACATGATAATCCTGATGGACATCCCCATTCAAGACAATCCTG
Found at i:47790269 original size:28 final size:28
Alignment explanation
Indices: 47790185--47790273 Score: 90
Period size: 28 Copynumber: 3.2 Consensus size: 28
47790175 TACATGATAG
* * * *
47790185 TCCTGATGGACATCTCTATTCAAGACAG
1 TCCTGATGGACATCCCCATTTAAGACAA
** * * *
47790213 TCCTGACAGACTTCCACA-TTAAGATAA
1 TCCTGATGGACATCCCCATTTAAGACAA
47790240 TCCTGATGGACATCCCCATTTAAGACAA
1 TCCTGATGGACATCCCCATTTAAGACAA
47790268 TCCTGA
1 TCCTGA
47790274 CAAACTTCCA
Statistics
Matches: 46, Mismatches: 14, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
27 20 0.43
28 26 0.57
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (28 bp):
TCCTGATGGACATCCCCATTTAAGACAA
Found at i:47790287 original size:28 final size:28
Alignment explanation
Indices: 47790206--47790289 Score: 98
Period size: 28 Copynumber: 3.0 Consensus size: 28
47790196 ATCTCTATTC
*
47790206 AAGACAGTCCTGACAGACTTCCACA-TT
1 AAGACAATCCTGACAGACTTCCACATTT
* ** * *
47790233 AAGATAATCCTGATGGACATCCCCATTT
1 AAGACAATCCTGACAGACTTCCACATTT
*
47790261 AAGACAATCCTGACAAACTTCCACATTT
1 AAGACAATCCTGACAGACTTCCACATTT
47790289 A
1 A
47790290 CGGTAATGCC
Statistics
Matches: 44, Mismatches: 12, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
27 19 0.43
28 25 0.57
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.25
Consensus pattern (28 bp):
AAGACAATCCTGACAGACTTCCACATTT
Found at i:47792984 original size:49 final size:49
Alignment explanation
Indices: 47792911--47793195 Score: 462
Period size: 49 Copynumber: 5.8 Consensus size: 49
47792901 TATGATATAC
* * *
47792911 ATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
*
47792960 ATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
47793009 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
* * *
47793058 ATATATATGTGATAAGGCCTAATGGCCGATGTGTTGAATGTGGAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
* * * * *
47793107 ATATGTATGTGATAAGGCCTAAGGGCCGATGTGTTGAATGTGGAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
47793156 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
47793196 CGATATGTAT
Statistics
Matches: 223, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 223 1.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (49 bp):
ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
Found at i:47793330 original size:37 final size:37
Alignment explanation
Indices: 47793274--47793360 Score: 156
Period size: 37 Copynumber: 2.3 Consensus size: 37
47793264 AACTTGGAAA
47793274 TATGTTCCGGGTACAACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTACAACCCGATGACTACGTGTGGAGAT
*
47793312 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTACAACCCGATGACTACGTGTGGAGAT
47793349 TATGTCCGGGTA
1 TATGTCCGGGTA
47793361 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 44 0.92
38 4 0.08
ACGTcount: A:0.22, C:0.21, G:0.31, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTACAACCCGATGACTACGTGTGGAGAT
Found at i:47797318 original size:18 final size:18
Alignment explanation
Indices: 47797295--47797348 Score: 74
Period size: 18 Copynumber: 3.0 Consensus size: 18
47797285 TAGCCCATTT
47797295 TAGTAACAGTAATCAGTG
1 TAGTAACAGTAATCAGTG
* *
47797313 TAGTAACCA-TGATCAATG
1 TAGTAA-CAGTAATCAGTG
47797331 TAGTAACAGTAATCAGTG
1 TAGTAACAGTAATCAGTG
47797349 CAGCATGCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
17 2 0.07
18 26 0.87
19 2 0.07
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (18 bp):
TAGTAACAGTAATCAGTG
Found at i:47797714 original size:27 final size:27
Alignment explanation
Indices: 47797670--47797783 Score: 111
Period size: 27 Copynumber: 4.2 Consensus size: 27
47797660 CAAATATGAA
* ** * *
47797670 ATTTTACCTTACCGGGGTATTACAGTC
1 ATTTTACCCTACAAGGGTATTTCGGTC
47797697 ATTTTACCCTACAAGGGTATTTCGGTC
1 ATTTTACCCTACAAGGGTATTTCGGTC
* * *** *
47797724 GTTCTACCCTATGGGGGTGTTTCGGTC
1 ATTTTACCCTACAAGGGTATTTCGGTC
* *
47797751 ATTTTACCCCATAAGGGTATTTCGGTC
1 ATTTTACCCTACAAGGGTATTTCGGTC
47797778 ATTTTA
1 ATTTTA
47797784 TCACATAAGG
Statistics
Matches: 70, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (27 bp):
ATTTTACCCTACAAGGGTATTTCGGTC
Found at i:47797790 original size:27 final size:27
Alignment explanation
Indices: 47797738--47797820 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
47797728 TACCCTATGG
* * *
47797738 GGGTGTTTCGGTCATTTTACCCCATAA
1 GGGTATTTCGGTCATTTTATCACATAA
47797765 GGGTATTTCGGTCATTTTATCACATAA
1 GGGTATTTCGGTCATTTTATCACATAA
* *
47797792 GGGCAAAATT--GTCATTTTATCACATAA
1 GGG--TATTTCGGTCATTTTATCACATAA
47797819 GG
1 GG
47797821 ATTCAAGTAC
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
27 46 0.94
29 3 0.06
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTTATCACATAA
Found at i:47800917 original size:18 final size:18
Alignment explanation
Indices: 47800894--47800951 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
47800884 AGCCCATTTT
47800894 AGTAACAGTAATCAGTGC
1 AGTAACAGTAATCAGTGC
* * *
47800912 AGTAACCA-TGATCAATGA
1 AGTAA-CAGTAATCAGTGC
*
47800930 AGTAACAGTAACCAGTGC
1 AGTAACAGTAATCAGTGC
47800948 AGTA
1 AGTA
47800952 TGCAAGTATA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
17 2 0.06
18 27 0.87
19 2 0.06
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (18 bp):
AGTAACAGTAATCAGTGC
Found at i:47801392 original size:27 final size:26
Alignment explanation
Indices: 47801283--47801398 Score: 108
Period size: 27 Copynumber: 4.3 Consensus size: 26
47801273 AACAAATCTA
* *
47801283 TCATTTTACCTTACCGGGGTATTATA-G
1 TCATTTTACCCTA-AGGGGTATT-TAGG
*
47801310 TCATTTTACCCTATAGGGGTATTTTGG
1 TCATTTTACCCTA-AGGGGTATTTAGG
* *
47801337 TCATTCTACCCTATGGGCGTATTTAGG
1 TCATTTTACCCTAAGGG-GTATTTAGG
* * *
47801364 TCATTTTACCCTAAGATGGTGTTTCGG
1 TCATTTTACCCTAAG-GGGTATTTAGG
47801391 TCATTTTA
1 TCATTTTA
47801399 TCACATAAGG
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 4 0.05
27 69 0.93
28 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (26 bp):
TCATTTTACCCTAAGGGGTATTTAGG
Found at i:47804425 original size:18 final size:17
Alignment explanation
Indices: 47804389--47804445 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 17
47804379 AGCCCAGTTT
47804389 AGTAACAATAATCATGC
1 AGTAACAATAATCATGC
* *
47804406 AGTAACCATGATCAATGC
1 AGTAACAATAATC-ATGC
*
47804424 AGTAACAGTAATCAGTGC
1 AGTAACAATAATCA-TGC
47804442 AGTA
1 AGTA
47804446 TCAAGAAGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
17 12 0.36
18 21 0.64
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.23
Consensus pattern (17 bp):
AGTAACAATAATCATGC
Found at i:47804683 original size:23 final size:23
Alignment explanation
Indices: 47804634--47804683 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
47804624 ACCCCATGCA
*
47804634 ATGCAACATAATATTATACATGG
1 ATGCAACATAATATTATACAAGG
47804657 ATGCAACATACATA-TA-ACAAGG
1 ATGCAACATA-ATATTATACAAGG
47804679 CATGC
1 -ATGC
47804684 TCAAATATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 5 0.21
23 16 0.67
24 3 0.12
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.24
Consensus pattern (23 bp):
ATGCAACATAATATTATACAAGG
Found at i:47804764 original size:27 final size:27
Alignment explanation
Indices: 47804745--47804834 Score: 137
Period size: 27 Copynumber: 3.3 Consensus size: 27
47804735 GGGTATTATA
*
47804745 GTCATTTTAACCTATAGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
* *
47804772 GTCATTCTACCCTATAGGGTTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
47804799 GTCATTTTACCCTAT-GAGGGTATTTCG
1 GTCATTTTACCCTATAG-GGGTATTTCG
47804826 GTCATTTTA
1 GTCATTTTA
47804835 TCAAATAAGG
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 1 0.02
27 56 0.98
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTTCG
Found at i:47809229 original size:38 final size:38
Alignment explanation
Indices: 47809186--47809364 Score: 286
Period size: 38 Copynumber: 4.7 Consensus size: 38
47809176 CAAGGCCTGA
* * *
47809186 ATATAATACCAGTACTAGGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
47809224 ATATAATACCAGCACGAAGCTTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* **
47809262 ATATATTACCAGCACGAAGCCTGCAAGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
47809300 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
47809338 ATATAATACCAGCACGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGG
47809365 TCTTTAAGCC
Statistics
Matches: 130, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 130 1.00
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:47818925 original size:48 final size:48
Alignment explanation
Indices: 47818843--47819112 Score: 294
Period size: 48 Copynumber: 5.6 Consensus size: 48
47818833 AGATCCTGTT
* * *
47818843 TAAGACCATGTCTGGGACATGGAATCGACGTTGATATGTATGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTATGCCAGTG
* * *
47818891 TAAGACCATGCCTGGGACATCGCATCGGCATTGATATGTATACCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTATGCCAGTG
* * *
47818939 GAAGACCATGT-TCGGGACATGGCATCGACATTGATATGTATGCCCGTG
1 TAAGACCATGTCT-GGGACATGGCATCGGCATTGATATGTATGCCAGTG
* * * ** * *
47818987 TAAGATCATGTTTGGGACATGGCATTGGGGTTGATATGCATGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTATGCCAGTG
* * *
47819035 CAAGACCATGTCTGGGACATGGCATCAGTG-A-TGATATGTGTGCAAGTG
1 TAAGACCATGTCTGGGACATGGCATC-G-GCATTGATATGTATGCCAGTG
* * *
47819083 TAAGACCATGTCTAGAACATGGTATCGGCA
1 TAAGACCATGTCTGGGACATGGCATCGGCA
47819113 CCAATATGTG
Statistics
Matches: 184, Mismatches: 33, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
46 1 0.01
47 3 0.02
48 177 0.96
49 2 0.01
50 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTATGCCAGTG
Found at i:47819103 original size:144 final size:144
Alignment explanation
Indices: 47818843--47819109 Score: 324
Period size: 144 Copynumber: 1.9 Consensus size: 144
47818833 AGATCCTGTT
* *
47818843 TAAGACCATGTCTGGGACATGGAATCGACGTTGATATGTATGCCAGTGTAAGACCATGCCTGGGA
1 TAAGACCATGTCTGGGACATGGAATCGACGTTGATATGCATGCCAGTGCAAGACCATGCCTGGGA
* * *
47818908 CATCGCATCGGCATTGATATGTATACCAGTGGAAGACCATGTTCGGGACATGGCATCGACATTGA
66 CATCGCATCGGCATTGATATGTATACAAGTGGAAGACCATGTTCAGAACATGGCATCGACATTGA
47818973 TATGTATGCCCGTG
131 TATGTATGCCCGTG
* * * * ** * *
47818987 TAAGATCATGTTTGGGACATGGCATTGGGGTTGATATGCATGCTAGTGCAAGACCATGTCTGGGA
1 TAAGACCATGTCTGGGACATGGAATCGACGTTGATATGCATGCCAGTGCAAGACCATGCCTGGGA
* * * * *
47819052 CATGGCATCAGTG-A-TGATATGTGTGCAAGTGTAAGACCATG-TCTAGAACATGGTATCG
66 CATCGCATC-G-GCATTGATATGTATACAAGTGGAAGACCATGTTC-AGAACATGGCATCG
47819110 GCACCAATAT
Statistics
Matches: 102, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
143 2 0.02
144 97 0.95
145 2 0.02
146 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (144 bp):
TAAGACCATGTCTGGGACATGGAATCGACGTTGATATGCATGCCAGTGCAAGACCATGCCTGGGA
CATCGCATCGGCATTGATATGTATACAAGTGGAAGACCATGTTCAGAACATGGCATCGACATTGA
TATGTATGCCCGTG
Found at i:47819120 original size:144 final size:144
Alignment explanation
Indices: 47818834--47819139 Score: 314
Period size: 144 Copynumber: 2.1 Consensus size: 144
47818824 TGGTTAGTGA
* * * *
47818834 GATCCTGTTTAAGACCATGTCTGGGACATGGAATCGACGTTGATATGTATGCCAGTGTAAGACCA
1 GATCCCGTGTAAGACCATGTCTGGGACATGGAATCGACGTTGATATGCATGCCAGTGCAAGACCA
* * *
47818899 TGCCTGGGACATCGCATCGGCATTGATATGTATACCAGTGGAAGACCATGTTCGGGACATGGCAT
66 TGCCTGGGACATCGCATCGGCATTGATATGTATACAAGTGGAAGACCATGTTCAGAACATGGCAT
***
47818964 CGACATTGATATGT
131 CGACACCAATATGT
* * * * ** *
47818978 -ATGCCCGTGTAAGATCATGTTTGGGACATGGCATTGGGGTTGATATGCATGCTAGTGCAAGACC
1 GAT-CCCGTGTAAGACCATGTCTGGGACATGGAATCGACGTTGATATGCATGCCAGTGCAAGACC
* * * * *
47819042 ATGTCTGGGACATGGCATCAGTG-A-TGATATGTGTGCAAGTGTAAGACCATG-TCTAGAACATG
65 ATGCCTGGGACATCGCATC-G-GCATTGATATGTATACAAGTGGAAGACCATGTTC-AGAACATG
* *
47819104 GTATCGGCACCAATATGT
127 GCATCGACACCAATATGT
**
47819122 GATCCCGTAAAAGACCAT
1 GATCCCGTGTAAGACCAT
47819140 ATCAGTGATC
Statistics
Matches: 130, Mismatches: 27, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
143 4 0.03
144 121 0.93
145 4 0.03
146 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (144 bp):
GATCCCGTGTAAGACCATGTCTGGGACATGGAATCGACGTTGATATGCATGCCAGTGCAAGACCA
TGCCTGGGACATCGCATCGGCATTGATATGTATACAAGTGGAAGACCATGTTCAGAACATGGCAT
CGACACCAATATGT
Found at i:47822513 original size:40 final size:40
Alignment explanation
Indices: 47822468--47822548 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
47822458 CATGCACGAA
*
47822468 TGCCTTCGGGTCTTAGCCCAGATGTAGTCACTAGTACAAT
1 TGCCTTCGGGTCTTAGCCCAGATGTAGTCACTAGCACAAT
47822508 TGCCTTCGGGTCTTAGCCCAGATGTAGTCACTAGCACAAT
1 TGCCTTCGGGTCTTAGCCCAGATGTAGTCACTAGCACAAT
47822548 T
1 T
47822549 AGCCCGGATA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCAGATGTAGTCACTAGCACAAT
Found at i:47830484 original size:39 final size:40
Alignment explanation
Indices: 47830416--47830541 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 40
47830406 CGGAATACAA
* * *
47830416 CCGGATATAACCAAT-GCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCAGGTCTTAGC
* * * * *
47830454 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCAGGTCTTAGC
* * * *
47830494 CCGGATATAATTACTAGCATAAATGTCTTCAGGACTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCAGGTCTTAGC
47830534 CCGGATAT
1 CCGGATAT
47830542 CATTCAATTG
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
38 11 0.16
39 12 0.17
40 47 0.67
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCAGGTCTTAGC
Found at i:47841775 original size:13 final size:13
Alignment explanation
Indices: 47841757--47841786 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
47841747 TTGTTTCCAT
47841757 TTTTATGTTTTTA
1 TTTTATGTTTTTA
47841770 TTTTATGTTTTTA
1 TTTTATGTTTTTA
47841783 TTTT
1 TTTT
47841787 CAATTGTGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80
Consensus pattern (13 bp):
TTTTATGTTTTTA
Found at i:47846288 original size:27 final size:28
Alignment explanation
Indices: 47846232--47846301 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
47846222 AAATTTGTAC
47846232 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
47846260 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
47846287 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
47846302 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:47846312 original size:27 final size:27
Alignment explanation
Indices: 47846232--47846313 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
47846222 AAATTTGTAC
* *
47846232 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
47846260 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
47846287 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
47846314 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:47853463 original size:27 final size:28
Alignment explanation
Indices: 47853407--47853476 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
47853397 AAAATTGTAC
47853407 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
47853435 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
47853462 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
47853477 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:47853487 original size:27 final size:27
Alignment explanation
Indices: 47853407--47853488 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
47853397 AAAATTGTAC
* *
47853407 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
47853435 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
47853462 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
47853489 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:47857238 original size:17 final size:17
Alignment explanation
Indices: 47857216--47857248 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
47857206 GTAACGCCAT
47857216 AAAAATC-CTGAAATCTA
1 AAAAATCACT-AAATCTA
47857233 AAAAATCACTAAATCT
1 AAAAATCACTAAATCT
47857249 TGAATTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.55, C:0.18, G:0.03, T:0.24
Consensus pattern (17 bp):
AAAAATCACTAAATCTA
Found at i:47858767 original size:29 final size:29
Alignment explanation
Indices: 47858722--47858839 Score: 125
Period size: 28 Copynumber: 4.2 Consensus size: 29
47858712 GTGAGCATGA
*
47858722 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* *
47858750 ATATGAATGTGAATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* * **
47858779 ATAAGAATATGAACT-GGCCGGATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* * *
47858807 ATTTGAATAAG-ATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
47858835 ATATG
1 ATATG
47858840 CATGTATGTA
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
27 2 0.03
28 36 0.51
29 33 0.46
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAATGGGCC
Found at i:47863299 original size:29 final size:29
Alignment explanation
Indices: 47863237--47863311 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 29
47863227 TAATATGATT
* * * *
47863237 TGGGCCTAATGGGCTATATGAATGTGAAT
1 TGGGTCTAATGGGCCATAAGAATGTGAAC
* *
47863266 TGGGTCTAGTGGGCCATAAGAATTTGAAC
1 TGGGTCTAATGGGCCATAAGAATGTGAAC
**
47863295 TGGGTCGGATGGGCCAT
1 TGGGTCTAATGGGCCAT
47863312 TTGAATAAGA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.24, C:0.13, G:0.35, T:0.28
Consensus pattern (29 bp):
TGGGTCTAATGGGCCATAAGAATGTGAAC
Found at i:47863668 original size:40 final size:40
Alignment explanation
Indices: 47863608--47863685 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
47863598 AACTAAGGGA
**
47863608 AAATTACTGAAATGCACCTAAGGGCGAGAATGACCAGAAT
1 AAATTACCAAAATGCACCTAAGGGCGAGAATGACCAGAAT
*
47863648 AAATTACCAAAATGCCCCTAAGGGCGAGAATGACCAGA
1 AAATTACCAAAATGCACCTAAGGGCGAGAATGACCAGA
47863686 CTACCCTTAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.42, C:0.21, G:0.22, T:0.15
Consensus pattern (40 bp):
AAATTACCAAAATGCACCTAAGGGCGAGAATGACCAGAAT
Found at i:47867737 original size:29 final size:29
Alignment explanation
Indices: 47867696--47867767 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
47867686 GCATGAATAT
* *
47867696 AATATGATTTGGGCCTAATGGGCCATAAA
1 AATATGAATTGGGCCTAATGGACCATAAA
* * *
47867725 AATGTGAATTGGGCCTAGTGGACCATAAG
1 AATATGAATTGGGCCTAATGGACCATAAA
*
47867754 AATATGAACTGGGC
1 AATATGAATTGGGC
47867768 TGGATGAGCC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (29 bp):
AATATGAATTGGGCCTAATGGACCATAAA
Found at i:47875939 original size:47 final size:48
Alignment explanation
Indices: 47875827--47876000 Score: 152
Period size: 46 Copynumber: 3.7 Consensus size: 48
47875817 GTATATTTGT
* *
47875827 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-A-TAGATCTC-GTA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCACT-CATCTCAATA
*
47875873 GCCGATGCATGTCCGAGACAT-GTCTTACACTAGCACTCATCTCAAT-
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCAATA
* * * * *
47875919 GCTGATGCCATGTCCCAGACATGGTCTTACAATGGCTCTCA--T-AATGTG
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCACTCATCTCAA--TA
*
47875967 GCCGATGCATGTCCCAGACAT-GTTTTACACTAGC
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGC
47876001 TCACACAAGT
Statistics
Matches: 107, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
44 10 0.09
45 16 0.15
46 30 0.28
47 30 0.28
48 21 0.20
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (48 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCAATA
Found at i:47875996 original size:94 final size:92
Alignment explanation
Indices: 47875830--47876000 Score: 236
Period size: 94 Copynumber: 1.8 Consensus size: 92
47875820 TATTTGTGCC
* * * *
47875830 GATGCCATGTCCCAGACATGGTCTTACACTGATAGATCTCGTAGCCGATGCATGTCCGAGACATG
1 GATGCCATGTCCCAGACATGGTCTTACAATGATACATATCGTAGCCGATGCATGTCCCAGACATG
47875895 TCTTACACTAGCACTCATCTCAATGCT
66 TCTTACACTAGCACTCATCTCAATGCT
* * *
47875922 GATGCCATGTCCCAGACATGGTCTTACAATGGCTCTCATAAT-GTGGCCGATGCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACAAT-GAT-ACAT-ATCGTAGCCGATGCATGTCCCAGAC
*
47875986 ATGTTTTACACTAGC
63 ATGTCTTACACTAGC
47876001 TCACACAAGT
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 29 0.43
93 2 0.03
94 36 0.53
95 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (92 bp):
GATGCCATGTCCCAGACATGGTCTTACAATGATACATATCGTAGCCGATGCATGTCCCAGACATG
TCTTACACTAGCACTCATCTCAATGCT
Found at i:47893028 original size:28 final size:29
Alignment explanation
Indices: 47892960--47893029 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 29
47892950 AATGAGATTG
47892960 GCACTAAGTGTGCGAGTTTAAATTGTATA
1 GCACTAAGTGTGCGAGTTTAAATTGTATA
* *
47892989 GCACTAAGTGTGCGAGTTT-GATTAT-TAA
1 GCACTAAGTGTGCGAGTTTAAATTGTAT-A
47893017 GCACTAAGTGTGC
1 GCACTAAGTGTGC
47893030 AGACTTACTA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 1 0.03
28 18 0.47
29 19 0.50
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.33
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTAAATTGTATA
Found at i:47896205 original size:46 final size:46
Alignment explanation
Indices: 47896155--47896330 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
47896145 TATTTGGGCA
47896155 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
47896201 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* *
47896248 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
47896294 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
47896331 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 32 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.19, C:0.22, G:0.31, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:47896310 original size:93 final size:93
Alignment explanation
Indices: 47896151--47896323 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
47896141 TGGATATTTG
* *
47896151 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
47896216 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
47896244 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
47896309 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
47896324 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:47899283 original size:15 final size:15
Alignment explanation
Indices: 47899244--47899322 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
47899234 GTATCTTGGG
*
47899244 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
47899259 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
47899274 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
47899288 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
47899303 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
47899317 TTTCTT
1 TTTCTT
47899323 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:47899307 original size:29 final size:29
Alignment explanation
Indices: 47899235--47899321 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
47899225 CATAGTATCG
* * * *
47899235 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
47899265 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
47899294 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
47899322 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:47901761 original size:46 final size:46
Alignment explanation
Indices: 47901694--47901868 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
47901684 TATTTGGGCA
47901694 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
47901740 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* *
47901787 TCCGAGCTCGTTGAGTTGAGTCCGAG-TCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
47901832 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
47901869 GCGGTTACAT
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 4 0.04
45 28 0.25
46 45 0.41
47 29 0.26
49 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:47901851 original size:92 final size:93
Alignment explanation
Indices: 47901690--47901860 Score: 299
Period size: 92 Copynumber: 1.8 Consensus size: 93
47901680 AGGGTATTTG
* *
47901690 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
47901755 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
47901783 GGCATCCGAGCTCGTTGAGTTGAGTCCGAG-TCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
47901847 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
47901861 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 45 0.61
93 29 0.39
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:47903805 original size:80 final size:80
Alignment explanation
Indices: 47903721--47903869 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
47903711 TATGGTAACC
* * * *
47903721 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
47903785 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
47903801 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
47903866 CCGG
66 CCGG
47903870 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:47903811 original size:40 final size:38
Alignment explanation
Indices: 47903762--47903869 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
47903752 ATCACGATTT
*
47903762 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
47903802 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
47903842 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
47903870 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:47907489 original size:40 final size:39
Alignment explanation
Indices: 47907324--47907507 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
47907314 AAATTGAATG
* * *
47907324 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
47907364 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
47907404 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
47907444 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
47907483 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
47907508 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:47907532 original size:80 final size:81
Alignment explanation
Indices: 47907364--47907552 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
47907354 GCTGGAAATT
* * * *
47907364 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
47907429 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
47907445 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
47907508 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
47907524 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
47907553 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:47914795 original size:40 final size:39
Alignment explanation
Indices: 47914630--47914813 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
47914620 AAATTGAATG
* * *
47914630 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
47914670 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
47914710 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
47914750 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
47914789 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
47914814 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:47914838 original size:80 final size:81
Alignment explanation
Indices: 47914670--47914858 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
47914660 GCTGGAAATT
* * * *
47914670 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
47914735 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
47914751 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
47914814 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
47914830 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
47914859 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:47917984 original size:22 final size:22
Alignment explanation
Indices: 47917913--47918031 Score: 59
Period size: 22 Copynumber: 5.1 Consensus size: 22
47917903 GCATATATGA
47917913 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
47917935 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
47917960 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* *
47917982 GATGAATG-TGAACAT-G-CATATGTGT
1 GAT-AAGGCCG-A-ATGGCCA-A--TGT
47918007 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
47918029 GAT
1 GAT
47918032 GAATGTGAAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 20 0.28
23 17 0.24
24 17 0.24
25 17 0.24
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:47918054 original size:71 final size:71
Alignment explanation
Indices: 47917977--47918127 Score: 288
Period size: 71 Copynumber: 2.2 Consensus size: 71
47917967 CCGAATGGCC
47917977 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
47918042 ATGCAT
66 ATGCAT
47918048 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
47918113 ATGCAT
66 ATGCAT
47918119 -ATGTG-TGAA
1 AATGTGATGAA
47918128 AAGGCCGAAT
Statistics
Matches: 80, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
69 4 0.05
70 5 0.06
71 71 0.89
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (71 bp):
AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
ATGCAT
Found at i:47918069 original size:118 final size:118
Alignment explanation
Indices: 47917930--47918174 Score: 445
Period size: 118 Copynumber: 2.1 Consensus size: 118
47917920 CCGAATGGCC
47917930 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
*
47917995 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCAT
66 ATGCATATGTGTGAAAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCAT
*
47918048 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
* *
47918113 ATGCATATGTGTGAAAAGGCCGAATGGCCAATGTGATGAATGTGAATATGTAT
66 ATGCATATGTGTGAAAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCAT
47918166 ATATGTGAT
1 A-ATGTGAT
47918175 AAGGCCGAAT
Statistics
Matches: 122, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
118 115 0.94
119 7 0.06
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (118 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
ATGCATATGTGTGAAAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCAT
Found at i:47918069 original size:165 final size:165
Alignment explanation
Indices: 47917883--47918221 Score: 606
Period size: 165 Copynumber: 2.0 Consensus size: 165
47917873 CCGAATGGCA
47917883 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
* *
47917948 ATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAG
66 ATGCATATATGTGAAAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAG
47918013 GCCGAATGGCCAATGTGATGAATGTGAACATGCAT
131 GCCGAATGGCCAATGTGATGAATGTGAACATGCAT
* *
47918048 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
* * *
47918113 ATGCATATGTGTGAAAAGGCCGAATGGCCAATGTGATGAATGTGAATATGTATATATGTGATAAG
66 ATGCATATATGTGAAAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAG
47918178 GCCGAATGGCCAATGTGATGAATGTGAACATGCAT
131 GCCGAATGGCCAATGTGATGAATGTGAACATGCAT
47918213 ATATGTGAT
1 A-ATGTGAT
47918222 AAGGCAGAAT
Statistics
Matches: 166, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
165 159 0.96
166 7 0.04
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (165 bp):
AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
ATGCATATATGTGAAAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAG
GCCGAATGGCCAATGTGATGAATGTGAACATGCAT
Found at i:47918076 original size:47 final size:47
Alignment explanation
Indices: 47917837--47918055 Score: 350
Period size: 47 Copynumber: 4.7 Consensus size: 47
47917827 TTAGGATTTT
* ** * * * *
47917837 ATGTGATAAATGTGAATGTGTACATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
47917884 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
47917931 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
47917978 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
47918025 ATGTGATGAATGTGAACATGCATA-ATGTGAT
1 ATGTGATGAATGTGAACATGCATATATGTGAT
47918056 GAATGTGAAC
Statistics
Matches: 163, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
46 6 0.04
47 157 0.96
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:47918099 original size:47 final size:47
Alignment explanation
Indices: 47918048--47918286 Score: 354
Period size: 47 Copynumber: 5.1 Consensus size: 47
47918038 GAACATGCAT
*
47918048 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
47918095 AATGTGATGAATGTGAACATGCATATGTGTGAAAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
47918142 AATGTGATGAATGTGAATATGTATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
47918189 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * * * * *
47918236 AATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCT
1 AATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCC
47918283 AATG
1 AATG
47918287 CGAAATGTGT
Statistics
Matches: 176, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 173 0.98
48 3 0.02
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.26
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:47918243 original size:22 final size:22
Alignment explanation
Indices: 47918168--47918243 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
47918158 ATATGTATAT
*
47918168 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
47918190 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
47918214 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
47918237 ATGTGAT
1 ATGTGAT
47918244 GAACGTGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:47918316 original size:46 final size:46
Alignment explanation
Indices: 47918260--47918422 Score: 272
Period size: 46 Copynumber: 3.5 Consensus size: 46
47918250 GGAAGTGTAT
* *
47918260 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
47918306 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
47918352 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATTG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* *
47918398 ATATGTGGTAAAGCCAAATGGCTAA
1 ATATGAGGTAAAGCCGAATGGCTAA
47918423 CGTGAGATAT
Statistics
Matches: 110, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 110 1.00
ACGTcount: A:0.36, C:0.10, G:0.30, T:0.24
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:47918435 original size:92 final size:92
Alignment explanation
Indices: 47918260--47918442 Score: 276
Period size: 92 Copynumber: 2.0 Consensus size: 92
47918250 GGAAGTGTAT
* * *
47918260 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTAAAGCCGAAT
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCAAAT
* *
47918325 GGCTAATGCGAAACATGTATGAGATGG
66 GGCTAACGCGAAACATGTATAAGATGG
* *
47918352 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATTGATATGTGGTAAAGCCAAAT
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCAAAT
* * *
47918417 GGCTAACGTGAGATATGTATAAGATG
66 GGCTAACGCGAAACATGTATAAGATG
47918443 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
92 81 1.00
ACGTcount: A:0.36, C:0.10, G:0.30, T:0.25
Consensus pattern (92 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCAAAT
GGCTAACGCGAAACATGTATAAGATGG
Found at i:47926043 original size:40 final size:40
Alignment explanation
Indices: 47925998--47926137 Score: 104
Period size: 40 Copynumber: 3.2 Consensus size: 40
47925988 CGGAATACAA
47925998 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
*
47926038 CCGGATAGAACGACTTGCACGGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATA-TA--AC---CAC-G---TGCACGAATGCCTTCGGGTCTTAGC
* ** * *
47926088 CCGGATGTAGTCGC-TAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACGT-GCACGAA-TGCCTTCGGGTCTTAGC
47926128 CCGGATATAA
1 CCGGATATAA
47926138 TTTCCAGCAT
Statistics
Matches: 79, Mismatches: 9, Indels: 24
0.71 0.08 0.21
Matches are distributed among these distances:
39 3 0.04
40 35 0.44
41 1 0.01
43 2 0.03
44 2 0.03
46 3 0.04
47 1 0.01
49 1 0.01
50 31 0.39
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
Found at i:47926158 original size:40 final size:40
Alignment explanation
Indices: 47926064--47926175 Score: 125
Period size: 40 Copynumber: 2.8 Consensus size: 40
47926054 GCACGGACTT
* * * *
47926064 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTCGCTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCGCCA
* * **
47926104 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCGCCA
* * *
47926144 GCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
47926176 CATTCAATTG
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCGCCA
Found at i:47934024 original size:40 final size:41
Alignment explanation
Indices: 47933979--47934111 Score: 148
Period size: 40 Copynumber: 3.2 Consensus size: 41
47933969 CGGAATACAA
47933979 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACGTAGCACGAATGCCTTCGGGTCTTAGC
* * *
47934019 CCGGATA-GACGACTGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-G--TAGCACGAATGCCTTCGGGTCTTAGC
* * *
47934062 CCGGATGTAGCCAC-TAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACGTAGCACGAA-TGCCTTCGGGTCTTAGC
47934102 CCGGATATAA
1 CCGGATATAA
47934112 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
39 6 0.08
40 37 0.48
42 1 0.01
43 30 0.39
44 3 0.04
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (41 bp):
CCGGATATAACCACGTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:47936576 original size:37 final size:37
Alignment explanation
Indices: 47936525--47936615 Score: 146
Period size: 37 Copynumber: 2.4 Consensus size: 37
47936515 TTATTACGAA
**
47936525 GTCTTACCTAGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
47936562 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
47936599 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
47936616 TTTCCAAGTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 45 0.90
38 5 0.10
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:47938190 original size:40 final size:39
Alignment explanation
Indices: 47938146--47938271 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
47938136 GGGACTCAAC
*
47938146 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
47938186 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
47938226 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
47938266 CCGGAT
1 CCGGAT
47938272 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:47938230 original size:80 final size:80
Alignment explanation
Indices: 47938085--47938271 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
47938075 GCTACACATT
* * *
47938085 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
47938149 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
47938165 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
47938228 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
47938246 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
47938272 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:47940036 original size:49 final size:49
Alignment explanation
Indices: 47939971--47940266 Score: 484
Period size: 49 Copynumber: 5.9 Consensus size: 49
47939961 CACACATATA
47939971 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
*
47940020 TTTCTCATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
47940069 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
* *
47940118 TTTCACTTTCGTCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
*
47940167 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCC---T----TATCACATATATACACAC
*
47940223 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
47940267 TATCTCATAC
Statistics
Matches: 233, Mismatches: 7, Indels: 14
0.92 0.03 0.06
Matches are distributed among these distances:
49 183 0.79
52 1 0.00
53 1 0.00
56 48 0.21
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
Found at i:47940235 original size:56 final size:56
Alignment explanation
Indices: 47940149--47940263 Score: 230
Period size: 56 Copynumber: 2.1 Consensus size: 56
47940139 CATTAGGCCT
47940149 TATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
1 TATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
47940205 TATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
1 TATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
47940261 TAT
1 TAT
47940264 ATATATCTCA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.33
Consensus pattern (56 bp):
TATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
Found at i:47940239 original size:27 final size:27
Alignment explanation
Indices: 47940150--47940239 Score: 80
Period size: 27 Copynumber: 3.3 Consensus size: 27
47940140 ATTAGGCCTT
47940150 ATCACATATATACACACTTTCACATTC
1 ATCACATATATACACACTTTCACATTC
**
47940177 ATCACAT-TGGCCATTAGGC-CTTATCACA-T-
1 ATCACATAT----A-TACACACTT-TCACATTC
47940206 ATCACATATATACACACTTTCACATTC
1 ATCACATATATACACACTTTCACATTC
47940233 ATCACAT
1 ATCACAT
47940240 TGGCCATTAG
Statistics
Matches: 49, Mismatches: 4, Indels: 20
0.67 0.05 0.27
Matches are distributed among these distances:
25 8 0.16
26 6 0.12
27 14 0.29
29 7 0.14
30 6 0.12
31 8 0.16
ACGTcount: A:0.34, C:0.29, G:0.04, T:0.32
Consensus pattern (27 bp):
ATCACATATATACACACTTTCACATTC
Found at i:47941669 original size:17 final size:17
Alignment explanation
Indices: 47941647--47941681 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
47941637 ATCTAAACAC
47941647 TTAACTACAAGATTTAA
1 TTAACTACAAGATTTAA
47941664 TTAACTACAAGATTTAA
1 TTAACTACAAGATTTAA
47941681 T
1 T
47941682 CACCATTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.11, G:0.06, T:0.37
Consensus pattern (17 bp):
TTAACTACAAGATTTAA
Found at i:47943097 original size:40 final size:40
Alignment explanation
Indices: 47943000--47943099 Score: 96
Period size: 40 Copynumber: 2.5 Consensus size: 40
47942990 GAATCACGTA
* * * *
47943000 CCTTCGGG-ATTTAACCGGATATAGCGACTCGCTCGATTG
1 CCTTCGGGAATTGACCCGGATATAGCGACTCGCACAATTG
* * * * *
47943039 TCTTCGGGACATAG-CCCGGTTATAGTGATTCGCACAATTG
1 CCTTCGGGA-ATTGACCCGGATATAGCGACTCGCACAATTG
47943079 CCTTCGGGAATTGACCCGGAT
1 CCTTCGGGAATTGACCCGGAT
47943100 TTAGTCACTT
Statistics
Matches: 46, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
39 10 0.22
40 34 0.74
41 2 0.04
ACGTcount: A:0.21, C:0.25, G:0.26, T:0.28
Consensus pattern (40 bp):
CCTTCGGGAATTGACCCGGATATAGCGACTCGCACAATTG
Found at i:47943933 original size:40 final size:40
Alignment explanation
Indices: 47943884--47944155 Score: 454
Period size: 40 Copynumber: 6.8 Consensus size: 40
47943874 CCAGCATGAT
* * *
47943884 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
47943924 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
47943964 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
47944004 TGCTCCTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
47944044 TGCTCTTCGGAACTTAGTGCGGATACATCACTAGGACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
47944084 TGCTCCTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
47944124 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
47944156 CTCAATTCTC
Statistics
Matches: 216, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 216 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:47946029 original size:37 final size:37
Alignment explanation
Indices: 47945979--47946069 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
47945969 TTATTACGAA
47945979 GTCTTACCCGGACATAATCTCCAAACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCAAACGTAGTCATCGG
*
47946016 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCAAACGTAGTCATCGG
*
47946053 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
47946070 TTTCCAAGTT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
37 46 0.90
38 5 0.10
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCAAACGTAGTCATCGG
Found at i:47946216 original size:49 final size:49
Alignment explanation
Indices: 47946156--47946500 Score: 564
Period size: 49 Copynumber: 6.9 Consensus size: 49
47946146 CACACATATA
47946156 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
*
47946205 TTTCTCATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
*
47946254 TTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
* *
47946303 TTTCACTTTCGTCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
*
47946352 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCC---T----TATCACATATATACACAC
*
47946408 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
*
47946457 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
47946501 TATCTCATAC
Statistics
Matches: 280, Mismatches: 9, Indels: 14
0.92 0.03 0.05
Matches are distributed among these distances:
49 230 0.82
52 1 0.00
53 1 0.00
56 48 0.17
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
Found at i:47946420 original size:56 final size:56
Alignment explanation
Indices: 47946334--47946497 Score: 279
Period size: 56 Copynumber: 3.1 Consensus size: 56
47946324 CATTAGGCCT
47946334 TATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
1 TATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
47946390 TATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGCC---T----
1 TATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
47946439 TATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
1 TATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
47946495 TAT
1 TAT
47946498 ATATATCTCA
Statistics
Matches: 101, Mismatches: 0, Indels: 14
0.88 0.00 0.12
Matches are distributed among these distances:
49 48 0.48
52 1 0.01
53 1 0.01
56 51 0.50
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.33
Consensus pattern (56 bp):
TATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
Found at i:47946466 original size:105 final size:105
Alignment explanation
Indices: 47946187--47946497 Score: 519
Period size: 105 Copynumber: 3.0 Consensus size: 105
47946177 CATTAGGCCT
*
47946187 TATCACATATATACACACTTTCTCATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
**
47946252 ACTTTCACATTCATCACATCAGCCATTAGGCC---T----
66 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
* *
47946285 TATCACATATATACACACTTTCACTTTCGTCACATCGGCCATTAGGCCTTATCACATATATACAC
1 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47946350 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
66 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
*
47946390 TATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
1 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
47946455 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
66 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
47946495 TAT
1 TAT
47946498 ATATATCTCA
Statistics
Matches: 198, Mismatches: 8, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
98 92 0.46
101 1 0.01
105 105 0.53
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (105 bp):
TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA
Found at i:47950357 original size:17 final size:18
Alignment explanation
Indices: 47950335--47950368 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
47950325 TGCCTATTAT
47950335 GGGCCCAA-TAGCCCATC
1 GGGCCCAATTAGCCCATC
47950352 GGGCCCAATTAGCCCAT
1 GGGCCCAATTAGCCCAT
47950369 TCTGGCCCGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.24, C:0.38, G:0.24, T:0.15
Consensus pattern (18 bp):
GGGCCCAATTAGCCCATC
Found at i:47960831 original size:43 final size:41
Alignment explanation
Indices: 47960745--47960836 Score: 112
Period size: 43 Copynumber: 2.2 Consensus size: 41
47960735 GTTTTATGTA
* * * *
47960745 TAAGACCATGTCTGGATATTGGCATCATATTTGATTTCGTG
1 TAAGACCATGTCTGGACAGTGGCATCATATTTGATTACATG
* *
47960786 TAAGACCCTGTCTAGGACAGTGGCATCAATGTTTGATTACATG
1 TAAGACCATGTCT-GGACAGTGGCATC-ATATTTGATTACATG
47960829 TAAGACCA
1 TAAGACCA
47960837 CATCTGGTAC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
41 12 0.29
42 11 0.26
43 19 0.45
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (41 bp):
TAAGACCATGTCTGGACAGTGGCATCATATTTGATTACATG
Found at i:47965857 original size:40 final size:40
Alignment explanation
Indices: 47965807--47965963 Score: 149
Period size: 40 Copynumber: 3.9 Consensus size: 40
47965797 CGGAATTTAA
* * * *
47965807 CCGGATATAGTGACTCGCTCGATTGTCTTCGGGACA-TAGC
1 CCGGTTATAGTGACTCGCACAATTGCCTTCGGGA-ATTAGC
*
47965847 CCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGC
1 CCGGTTATAGTGACTCGCACAATTGCCTTCGGGAATTAGC
* * * * *
47965887 CCGGATT-TAGTAACTCGCATAAATGCCTTCGGGACTTAAC
1 CCGG-TTATAGTGACTCGCACAATTGCCTTCGGGAATTAGC
* * *
47965927 CCGGTTTTGGTAACTCGCACCAA-TGCCTTCGGGAATT
1 CCGGTTATAGTGACTCGCA-CAATTGCCTTCGGGAATT
47965964 GACCCGGATT
Statistics
Matches: 99, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
39 3 0.03
40 92 0.93
41 4 0.04
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (40 bp):
CCGGTTATAGTGACTCGCACAATTGCCTTCGGGAATTAGC
Found at i:47965969 original size:40 final size:38
Alignment explanation
Indices: 47965861--47965977 Score: 144
Period size: 40 Copynumber: 2.9 Consensus size: 38
47965851 TTATAGTGAT
47965861 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAAC
1 TCGCACAA-TGCCTTCGGGAATTA-CCCGGATTTAGTAAC
* * * *
47965901 TCGCATAAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCA-CAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
47965941 TCGCACCAATGCCTTCGGGAATTGACCCGGATTTAGT
1 TCGCA-CAATGCCTTCGGGAATT-ACCCGGATTTAGT
47965978 CGCTTAGCAC
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
40 62 0.95
41 3 0.05
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (38 bp):
TCGCACAATGCCTTCGGGAATTACCCGGATTTAGTAAC
Found at i:47968561 original size:46 final size:46
Alignment explanation
Indices: 47968503--47968620 Score: 141
Period size: 46 Copynumber: 2.5 Consensus size: 46
47968493 ACATATAGGT
47968503 TAGTGTAAGACATGTCTGGGACATGCACCGAGCT-CGAGA-CATAAGC
1 TAGTGTAAGACATGTCTGGGACATGCACCG-GCTACGAGATCAT-AGC
** * * * *
47968549 TAGTGTAAGACATGTCTAAGACATGCATCGGCTATGAGATGATAGT
1 TAGTGTAAGACATGTCTGGGACATGCACCGGCTACGAGATCATAGC
47968595 TAGTGTAAGACCATGTCTGGGACATG
1 TAGTGTAAGA-CATGTCTGGGACATG
47968621 GCATCGGCAC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
45 3 0.05
46 43 0.70
47 15 0.25
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTGGGACATGCACCGGCTACGAGATCATAGC
Found at i:47969384 original size:19 final size:21
Alignment explanation
Indices: 47969340--47969384 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
47969330 ACACGGGTAG
*
47969340 ACACACGGCCGTGTGTCTAGGC
1 ACACACGGCCGTGTG-CTAGAC
47969362 -CACACGGCCGTGTG-T-GAC
1 ACACACGGCCGTGTGCTAGAC
47969380 ACACA
1 ACACA
47969385 GCCAGCCCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
18 2 0.10
19 5 0.24
21 14 0.67
ACGTcount: A:0.22, C:0.33, G:0.29, T:0.16
Consensus pattern (21 bp):
ACACACGGCCGTGTGCTAGAC
Found at i:47973970 original size:19 final size:18
Alignment explanation
Indices: 47973946--47973989 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
47973936 ATAATTAAAG
47973946 ATAATTAAAATAAAATCCTA
1 ATAATTAAAAT--AATCCTA
*
47973966 A-AATTTAAATAATCCTA
1 ATAATTAAAATAATCCTA
47973983 ATAATTA
1 ATAATTA
47973990 TCTTAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 8 0.38
20 1 0.05
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAATTAAAATAATCCTA
Found at i:47974004 original size:15 final size:15
Alignment explanation
Indices: 47973984--47974013 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
47973974 ATAATCCTAA
*
47973984 TAATTATCTTAATAT
1 TAATTATCCTAATAT
47973999 TAATTATCCTAATAT
1 TAATTATCCTAATAT
47974014 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:47975999 original size:17 final size:18
Alignment explanation
Indices: 47975973--47976042 Score: 76
Period size: 17 Copynumber: 4.1 Consensus size: 18
47975963 AGAGAACTTT
*
47975973 ATTAATATAATAA-AATA
1 ATTAAAATAATAATAATA
*
47975990 ATTAAAATAA-AATAAGA
1 ATTAAAATAATAATAATA
*
47976007 AATAAAATAATAA-AATA
1 ATTAAAATAATAATAATA
*
47976024 AAT-AAATAATAATAATA
1 ATTAAAATAATAATAATA
47976041 AT
1 AT
47976043 AGAAATAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
16 11 0.24
17 32 0.71
18 2 0.04
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.29
Consensus pattern (18 bp):
ATTAAAATAATAATAATA
Found at i:47976011 original size:12 final size:12
Alignment explanation
Indices: 47975994--47976053 Score: 52
Period size: 12 Copynumber: 4.8 Consensus size: 12
47975984 AAAATAATTA
47975994 AAATAAAATAAG
1 AAATAAAATAAG
*
47976006 AAATAAAATAAT
1 AAATAAAATAAG
47976018 AAA-ATAAATAA-
1 AAATA-AAATAAG
47976029 ATAATAATAATAATAG
1 A-AATAA-AAT-A-AG
47976045 AAATAAAAT
1 AAATAAAAT
47976054 TTAAAATTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
11 2 0.05
12 23 0.57
13 4 0.10
14 4 0.10
15 6 0.15
16 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (12 bp):
AAATAAAATAAG
Found at i:47976024 original size:39 final size:39
Alignment explanation
Indices: 47975975--47976053 Score: 108
Period size: 39 Copynumber: 2.0 Consensus size: 39
47975965 AGAACTTTAT
* *
47975975 TAATATAATAAAATAATTAA-AATAA-AATAAGAAATAAAA
1 TAATAAAAT-AAATAAATAATAATAATAAT-AGAAATAAAA
47976014 TAATAAAATAAATAAATAATAATAATAATAGAAATAAAA
1 TAATAAAATAAATAAATAATAATAATAATAGAAATAAAA
47976053 T
1 T
47976054 TTAAAATTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
38 9 0.25
39 24 0.67
40 3 0.08
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.27
Consensus pattern (39 bp):
TAATAAAATAAATAAATAATAATAATAATAGAAATAAAA
Found at i:47976034 original size:3 final size:3
Alignment explanation
Indices: 47975975--47976043 Score: 51
Period size: 3 Copynumber: 23.7 Consensus size: 3
47975965 AGAACTTTAT
*
47975975 TAA T-A TAA TAA -AA TAA TTAA -AA TAA -AA TAA GAAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA -TAA TAA TAA TAA
47976017 TAA -AA TAAA TAAA TAA TAA TAA TAA TA
1 TAA TAA T-AA T-AA TAA TAA TAA TAA TA
47976044 GAAATAAAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
2 12 0.22
3 31 0.56
4 12 0.22
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:47976049 original size:6 final size:5
Alignment explanation
Indices: 47975976--47976053 Score: 58
Period size: 5 Copynumber: 15.6 Consensus size: 5
47975966 GAACTTTATT
* *
47975976 AATAT AATAA AAT-A ATTAA AATAA AATAAGA AATAA AAT-- AATAA AAT-A
1 AATAA AATAA AATAA AATAA AATAA AAT-A-A AATAA AATAA AATAA AATAA
47976024 AAT-A AATAA TAATAA TAATAGA AATAA AAT
1 AATAA AATAA -AATAA -AATA-A AATAA AAT
47976054 TTAAAATTAA
Statistics
Matches: 62, Mismatches: 3, Indels: 16
0.77 0.04 0.20
Matches are distributed among these distances:
3 3 0.05
4 11 0.18
5 27 0.44
6 16 0.26
7 5 0.08
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.26
Consensus pattern (5 bp):
AATAA
Found at i:47976049 original size:9 final size:8
Alignment explanation
Indices: 47975979--47976050 Score: 67
Period size: 9 Copynumber: 8.5 Consensus size: 8
47975969 CTTTATTAAT
47975979 ATAATAAA
1 ATAATAAA
47975987 ATAATTAAA
1 ATAA-TAAA
47975996 ATAA-AATA
1 ATAATAA-A
*
47976004 AGAAATAAA
1 A-TAATAAA
47976013 ATAATAAA
1 ATAATAAA
47976021 ATAA-ATAA
1 ATAATA-AA
47976029 ATAATAATA
1 ATAATAA-A
47976038 ATAATAGAA
1 ATAATA-AA
47976047 ATAA
1 ATAA
47976051 AATTTAAAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
7 3 0.06
8 23 0.43
9 25 0.46
10 3 0.06
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (8 bp):
ATAATAAA
Found at i:47982442 original size:10 final size:10
Alignment explanation
Indices: 47982427--47982458 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
47982417 TAAATACATT
47982427 TAATTAAAGA
1 TAATTAAAGA
47982437 TAATTAAAGA
1 TAATTAAAGA
47982447 TAATTAAA-A
1 TAATTAAAGA
47982456 TAA
1 TAA
47982459 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:47982470 original size:19 final size:18
Alignment explanation
Indices: 47982446--47982489 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
47982436 ATAATTAAAG
47982446 ATAATTAAAATAAAATCCTA
1 ATAATTAAAAT--AATCCTA
*
47982466 A-AATTTAAATAATCCTA
1 ATAATTAAAATAATCCTA
47982483 ATAATTA
1 ATAATTA
47982490 TCTTAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 8 0.38
20 1 0.05
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAATTAAAATAATCCTA
Found at i:47982504 original size:15 final size:15
Alignment explanation
Indices: 47982484--47982513 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
47982474 ATAATCCTAA
*
47982484 TAATTATCTTAATAT
1 TAATTATCCTAATAT
47982499 TAATTATCCTAATAT
1 TAATTATCCTAATAT
47982514 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:47986033 original size:28 final size:28
Alignment explanation
Indices: 47985972--47986069 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
47985962 TCACAAATTG
** * *
47985972 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
47986001 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
47986029 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
47986057 GCACTAAGTGTGC
1 GCACTAAGTGTGC
47986070 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:47993684 original size:28 final size:28
Alignment explanation
Indices: 47993623--47993720 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
47993613 TCACAAATTG
** * *
47993623 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
47993652 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
47993680 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
47993708 GCACTAAGTGTGC
1 GCACTAAGTGTGC
47993721 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:47998660 original size:57 final size:57
Alignment explanation
Indices: 47998597--47998710 Score: 210
Period size: 57 Copynumber: 2.0 Consensus size: 57
47998587 ACATTTTTGA
* *
47998597 ACCCCTTGAAGCATGAGCTTTCAAATGAGGGTACTATTTTGCAAAATGGTTGAAAGT
1 ACCCCTTGAAGCATGAGCTTTCAAATGAGGGTACTATATTGCAAAATGATTGAAAGT
47998654 ACCCCTTGAAGCATGAGCTTTCAAATGAGGGTACTATATTGCAAAATGATTGAAAGT
1 ACCCCTTGAAGCATGAGCTTTCAAATGAGGGTACTATATTGCAAAATGATTGAAAGT
47998711 CTAGGGTTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (57 bp):
ACCCCTTGAAGCATGAGCTTTCAAATGAGGGTACTATATTGCAAAATGATTGAAAGT
Found at i:47999503 original size:13 final size:13
Alignment explanation
Indices: 47999485--47999509 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47999475 CATGGGTGAT
47999485 GAAAAAAAAAAGA
1 GAAAAAAAAAAGA
47999498 GAAAAAAAAAAG
1 GAAAAAAAAAAG
47999510 TTCTCATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
GAAAAAAAAAAGA
Found at i:48000916 original size:79 final size:79
Alignment explanation
Indices: 48000778--48000997 Score: 277
Period size: 79 Copynumber: 2.8 Consensus size: 79
48000768 TATTCGGATG
* * *
48000778 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGCCCCGAAGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGCA
*
48000842 TTTGTGCTAGTGACT
65 TTTGTGCGAGTGACT
** *
48000857 A-ATTTCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAA-GC
*
48000921 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTGACT
* * *
48000937 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATATCC-GGCTAAATCCCGAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAG
48000998 GTACTTGGTT
Statistics
Matches: 122, Mismatches: 14, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.02
79 66 0.54
80 53 0.43
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGCAT
TTGTGCGAGTGACT
Found at i:48000995 original size:119 final size:119
Alignment explanation
Indices: 48000782--48000998 Score: 289
Period size: 119 Copynumber: 1.8 Consensus size: 119
48000772 CGGATGATAA
* * *
48000782 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCCGAAGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCCGAAGCATTTGA
* * *
48000847 GCTAGTGACTAATTTCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
66 GCTAGTGACTAATATCCGGCTAAACCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
48000901 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGCCCCGAA-GCATTT
*
48000965 GAG-TGAGT-AGCT-ATATCCGGCTAAATCCCGAAGG
64 GAGCT-AGTGA-CTAATATCCGGCTAAACCCCGAAGG
48000999 TACTTGGTTT
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
118 2 0.02
119 70 0.82
120 13 0.15
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCCGAAGCATTTGA
GCTAGTGACTAATATCCGGCTAAACCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:48000998 original size:39 final size:40
Alignment explanation
Indices: 48000782--48000998 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
48000772 CGGATGATAA
* *
48000782 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* * *
48000822 CCGGGCTAAGCCCCGAA-GCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
48000861 TCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48000901 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
48000941 CCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
48000981 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
48000999 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 55 0.34
40 107 0.66
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:48008816 original size:39 final size:40
Alignment explanation
Indices: 48008744--48008959 Score: 291
Period size: 40 Copynumber: 5.5 Consensus size: 40
48008734 CGGATGATAA
*
48008744 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
* *
48008784 CCGGGCTAAGCCCCGAA-GCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
*
48008823 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* *
48008862 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
*
48008902 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATAT
*
48008942 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
48008960 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
38 6 0.04
39 76 0.46
40 83 0.50
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:48010529 original size:46 final size:47
Alignment explanation
Indices: 48010476--48010600 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 47
48010466 ATTTAGATCT
*
48010476 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-C-GAGACGTAT-GCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTACAAAGA--TATAGCC
* *
48010522 AGTGTAAGACATATCTGGGACATGCATCGG-CTACAAAGATATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTACAAAGATATAGCC
*
48010568 AGTGTAAGACCATGTCTAGGACATAGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
48010601 ACCTTACCTC
Statistics
Matches: 68, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
45 5 0.07
46 41 0.60
47 15 0.22
48 7 0.10
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTACAAAGATATAGCC
Found at i:48016373 original size:47 final size:48
Alignment explanation
Indices: 48016316--48016536 Score: 217
Period size: 46 Copynumber: 4.7 Consensus size: 48
48016306 GTAAGTTACA
* *
48016316 GATGCTATGTCCCAGACATGGTCTTACAATGGCTCACATCT-AAATTC
1 GATGCCATGTCCCAGACATGGTCTTACAATGGCTCACATCTCAAAGTC
* * *
48016363 GATGCCATGTCCCAGACATGGTCTTACACA--ACT-ATCATCTCGTAA-CC
1 GATGCCATGTCCCAGACATGGTCTTACA-ATGGCTCA-CATCTC-AAAGTC
* * * * *
48016410 GATG-CATGTCCCAGACAT-GTCTTACATTGGCTTACGTCTCGAGGTC
1 GATGCCATGTCCCAGACATGGTCTTACAATGGCTCACATCTCAAAGTC
* * *
48016456 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCAAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACAATGGCTCACATCTCAAAGTC
* *
48016502 GATGCCATGTCCCAGACATGGTCTTTCACTGGCTC
1 GATGCCATGTCCCAGACATGGTCTTACAATGGCTC
48016537 TCATAATGTG
Statistics
Matches: 145, Mismatches: 19, Indels: 19
0.79 0.10 0.10
Matches are distributed among these distances:
45 10 0.07
46 72 0.50
47 47 0.32
48 16 0.11
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACAATGGCTCACATCTCAAAGTC
Found at i:48016558 original size:47 final size:45
Alignment explanation
Indices: 48016316--48016580 Score: 200
Period size: 46 Copynumber: 5.7 Consensus size: 45
48016306 GTAAGTTACA
* * * *
48016316 GATGCTATGTCCCAGACATGGTCTTACAATGGCTCACA-TCTAAATTC
1 GATGC-ATGTCCCAGACAT-GTCTTACACTAGCTCTCACTC-AAAGTC
* * * *
48016363 GATGCCATGTCCCAGACATGGTCTTACAC-AACTATCATCTCGTAA-CC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCA-CTC-AAAGTC
* * * * *
48016410 GATGCATGTCCCAGACATGTCTTACATTGGCT-TACGTCTCGAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-C-ACTCAAAGTC
48016456 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAAGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCA-CTCAAAGTC
* * *
48016502 GATGCCATGTCCCAGACATGGTCTTTCACTGGCTCTCA-T-AATGTGGC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCACTCAAAGT--C
*
48016549 TGATGCATGTCTCAGACATGTCTTACACTAGC
1 -GATGCATGTCCCAGACATGTCTTACACTAGC
48016581 CAACAACAAC
Statistics
Matches: 178, Mismatches: 26, Indels: 29
0.76 0.11 0.12
Matches are distributed among these distances:
45 14 0.08
46 79 0.44
47 60 0.34
48 25 0.14
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCACTCAAAGTC
Found at i:48020527 original size:2 final size:2
Alignment explanation
Indices: 48020520--48020545 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
48020510 GATAGGAAAA
48020520 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
48020546 TTTTATAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:48026208 original size:5 final size:5
Alignment explanation
Indices: 48026190--48026221 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
48026180 AGGATTCAGT
48026190 TTTTC TTCTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC T
48026222 CTTCATCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:48026218 original size:15 final size:16
Alignment explanation
Indices: 48026190--48026245 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 16
48026180 AGGATTCAGT
48026190 TTTTCTTCTTCTTTTC
1 TTTTCTTCTTCTTTTC
48026206 TTTTCTT-TTCTTTTC
1 TTTTCTTCTTCTTTTC
* * *
48026221 TCTTCATCTAC-TTTC
1 TTTTCTTCTTCTTTTC
*
48026236 TCTTCTTCTT
1 TTTTCTTCTT
48026246 TTCCCCCATA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
15 25 0.74
16 9 0.26
ACGTcount: A:0.04, C:0.27, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTCTTCTTCTTTTC
Found at i:48031859 original size:47 final size:46
Alignment explanation
Indices: 48031788--48032243 Score: 285
Period size: 47 Copynumber: 9.7 Consensus size: 46
48031778 TGATTTGTGC
48031788 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGATA
* * *
48031834 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG---GCATTAAGACGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCACATTATGA-TA
* * * *
48031880 GGGCTAGTGTAAGATATGTCTGGGACATGCATC-AGTCA-TTCTATGATA
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGA-CCACAT-TATGATA
* * *
48031928 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGT-TGAGT-
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-CACATTATGA-TA
* * ** *
48031976 GCCAGTGTAAGACATGTTTGGGACATGCATCGACCTCAACAGAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACATTA-TGATA
* * **
48032023 GCCAGTGTAAGACTATGTCTGGGACATGGCATTG-GCACAGAGATGAGT-
1 GCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGACCACA-TTATGA-TA
* * * *
48032071 GCCAATGTAAGACATGTTTGGGACATGCATCGGCCTCGACA-GA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GAC-C-ACATTATGATA
* * * * * *
48032118 GCCAGTGTAAGACGTGTCTGGGACACGCATCGGCTA-A-GA-GATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAT-A
* * * *
48032162 GCTAGTGTAAGACATGTCTGGGACATGCATC-AGCACGCTTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGA-C-CACAT-TATGATA
48032210 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
48032244 GCAATATATC
Statistics
Matches: 322, Mismatches: 50, Indels: 71
0.73 0.11 0.16
Matches are distributed among these distances:
43 6 0.02
44 30 0.09
45 9 0.03
46 44 0.14
47 110 0.34
48 82 0.25
49 33 0.10
50 8 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGATA
Found at i:48032060 original size:95 final size:95
Alignment explanation
Indices: 48031788--48032246 Score: 530
Period size: 94 Copynumber: 4.9 Consensus size: 95
48031778 TGATTTGTGC
* ** *
48031788 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACATTA-TGATAGCCAGTGTAAGACCATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCAACAGAGATAGCCAGTGTAAGACCATGT
* * *
48031852 CTGGGACATGGCATCGGCATTA-AGACGAGG
66 CTGGGACATGGCATCGGCA-CAGAGATGAGT
* * * * *
48031882 GCTAGTGTAAGATATGTCTGGGACATGCATC-A-GTCATTCTA-TGATAGCCAGTGTAAGACCAT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCA-AC-AGAGATAGCCAGTGTAAGACCAT
*
48031944 GTCTGGGACATGGCATCGGCACAGAGTTGAGT
64 GTCTGGGACATGGCATCGGCACAGAGATGAGT
* *
48031976 GCCAGTGTAAGACATGTTTGGGACATGCATCGACCTCAACAGAGATAGCCAGTGTAAGACTATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCAACAGAGATAGCCAGTGTAAGACCATGT
*
48032041 CTGGGACATGGCATTGGCACAGAGATGAGT
66 CTGGGACATGGCATCGGCACAGAGATGAGT
* * * * *
48032071 GCCAATGTAAGACATGTTTGGGACATGCATCGGCCTCGACAGAGATAGCCAGTGTAAGA-CGTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCAACAGAGATAGCCAGTGTAAGACCATGT
*
48032135 CTGGGACA-CGCATCGGCTA-AGAGAT--GT
66 CTGGGACATGGCATCGGC-ACAGAGATGAGT
* * *
48032162 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCTTATA-TGAG--AGCCAGTGTAAGACC
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-G-AC-CTCA-ACAGAGATAGCCAGTGTAAGACC
48032224 ATGTCTGGGACATGGCATCGGCA
62 ATGTCTGGGACATGGCATCGGCA
48032247 ATATATCCCA
Statistics
Matches: 318, Mismatches: 34, Indels: 27
0.84 0.09 0.07
Matches are distributed among these distances:
91 30 0.09
92 16 0.05
93 30 0.09
94 131 0.41
95 108 0.34
96 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (95 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCAACAGAGATAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCGGCACAGAGATGAGT
Found at i:48034258 original size:40 final size:39
Alignment explanation
Indices: 48034213--48034420 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 39
48034203 CGGAATACAA
*
48034213 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
48034253 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
48034293 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
48034333 CCGGATGTAGTCGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* ** * * *
48034373 TCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
48034413 CCGGATAT
1 CCGGATAT
48034421 CATTCAATTG
Statistics
Matches: 138, Mismatches: 29, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 1 0.01
40 137 0.99
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:48034353 original size:80 final size:81
Alignment explanation
Indices: 48034213--48034418 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 81
48034203 CGGAATACAA
* * *
48034213 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
48034277 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
48034293 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TCG-CTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
48034356 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* ** * ** * *
48034373 TCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
48034419 ATCATTCAAT
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 102 0.95
81 2 0.02
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:48042205 original size:19 final size:19
Alignment explanation
Indices: 48042181--48042236 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
48042171 GTATTCGATT
48042181 ACATGTGAATTTATATTGA
1 ACATGTGAATTTATATTGA
* *
48042200 ACATGTGTATTTA-GTT--
1 ACATGTGAATTTATATTGA
*
48042216 ACATGTGAGTTTATATTGA
1 ACATGTGAATTTATATTGA
48042235 AC
1 AC
48042237 TTATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 11 0.38
17 2 0.07
18 2 0.07
19 14 0.48
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (19 bp):
ACATGTGAATTTATATTGA
Found at i:48042252 original size:33 final size:35
Alignment explanation
Indices: 48042179--48042245 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
48042169 GAGTATTCGA
*
48042179 TTACATGTGAATTTATATTGAACATGTGTATTTAG
1 TTACATGTGAATTTATATTGAACATGTATATTTAG
*
48042214 TTACATGTGAGTTTATATTGAAC-T-TATATTTA
1 TTACATGTGAATTTATATTGAACATGTATATTTA
48042246 TATACATTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 7 0.23
34 1 0.03
35 22 0.73
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.48
Consensus pattern (35 bp):
TTACATGTGAATTTATATTGAACATGTATATTTAG
Found at i:48043046 original size:40 final size:40
Alignment explanation
Indices: 48042998--48043244 Score: 404
Period size: 40 Copynumber: 6.2 Consensus size: 40
48042988 GAACTAAGAT
* * *
48042998 CCGAAGGCATTTGTGCTAGTTACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
48043038 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
* *
48043078 CCGAAGGCATTTGTGCTAGTCGCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
* *
48043118 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
*
48043158 CCGAAGGCATTTGTGCTAGTTGCTAAATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
* *
48043198 CCAAAGGCATTTGTACTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
48043238 CCGAAGG
1 CCGAAGG
48043245 TACTTGGGTT
Statistics
Matches: 193, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 193 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
Found at i:48045520 original size:79 final size:82
Alignment explanation
Indices: 48045380--48045564 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
48045370 TCGAATGATG
* * *
48045380 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
48045444 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
48045460 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
48045522 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
48045540 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
48045565 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:48045572 original size:40 final size:40
Alignment explanation
Indices: 48045381--48045572 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
48045371 CGAATGATGT
* * * * *
48045381 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
48045421 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
48045461 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
48045500 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
48045540 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
48045573 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:48045595 original size:79 final size:79
Alignment explanation
Indices: 48045380--48045597 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
48045370 TCGAATGATG
* * * * ** *
48045380 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
48045443 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
48045460 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
48045525 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
48045540 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
48045598 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:48053222 original size:19 final size:19
Alignment explanation
Indices: 48053198--48053253 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
48053188 GTAATCGATT
48053198 ACATGTGAATTTATATTGA
1 ACATGTGAATTTATATTGA
* *
48053217 ACATGTGTATTTA-GTT--
1 ACATGTGAATTTATATTGA
*
48053233 ACATGTGAGTTTATATTGA
1 ACATGTGAATTTATATTGA
48053252 AC
1 AC
48053254 TTATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 11 0.38
17 2 0.07
18 2 0.07
19 14 0.48
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (19 bp):
ACATGTGAATTTATATTGA
Found at i:48053269 original size:33 final size:35
Alignment explanation
Indices: 48053196--48053262 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
48053186 GAGTAATCGA
*
48053196 TTACATGTGAATTTATATTGAACATGTGTATTTAG
1 TTACATGTGAATTTATATTGAACATGTATATTTAG
*
48053231 TTACATGTGAGTTTATATTGAAC-T-TATATTTA
1 TTACATGTGAATTTATATTGAACATGTATATTTA
48053263 TATACATTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 7 0.23
34 1 0.03
35 22 0.73
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.48
Consensus pattern (35 bp):
TTACATGTGAATTTATATTGAACATGTATATTTAG
Found at i:48054061 original size:40 final size:40
Alignment explanation
Indices: 48054013--48054258 Score: 413
Period size: 40 Copynumber: 6.2 Consensus size: 40
48054003 GAACTAAGAT
* *
48054013 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
48054053 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
* *
48054093 CCGAAGGCATTTGTGATAGTTGCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
* * *
48054133 CCGAAGGCATTTGTGCTAGTTACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
*
48054173 CCAAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
48054213 CCGAA-GCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
48054252 CCGAAGG
1 CCGAAGG
48054259 TACTTGGGTT
Statistics
Matches: 193, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 39 0.20
40 154 0.80
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
Found at i:48059596 original size:40 final size:39
Alignment explanation
Indices: 48059428--48059598 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
48059418 AGAAATTGAA
* *
48059428 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
48059468 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
48059508 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
48059548 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
48059588 TGATATCCGGG
1 TGATATCCGGG
48059599 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:48067619 original size:40 final size:39
Alignment explanation
Indices: 48067451--48067630 Score: 161
Period size: 40 Copynumber: 4.5 Consensus size: 39
48067441 AGAAATTGAA
* *
48067451 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
48067491 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
48067531 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
48067571 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
*
48067611 TGATATCCGGG-TAAGTCCCG
1 TGATATCCGGGCTAAGACCCG
48067631 TTGGCCTTGG
Statistics
Matches: 115, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.03
39 12 0.10
40 95 0.83
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:48070991 original size:46 final size:46
Alignment explanation
Indices: 48070843--48071203 Score: 262
Period size: 47 Copynumber: 7.7 Consensus size: 46
48070833 CGATTTGTGC
* * *
48070843 GCCAGTGTAAGACATGTCTGGGACATCCATCGGCCACATTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATACTATGATA
* * *
48070889 GCCAGTGTAAGACCATATCTGGGACATGGCATC-GACAT-CTA-GACGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATACTATGA-TA
* *
48070935 GGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATA
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATACTATGATA
* *
48070983 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGA-GATGAGT-
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CATACTATGA-TA
*
48071031 GCCAGTGTAAGACATGTCT-GGACATGCATCGGCC-TCGAC-AGAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAT--ACTA-TGATA
** * * ** *
48071077 GCCAGTGTAAGATGTGTC-GTTGACATGCGTCGG-C-TAAGA-GATGT
1 GCCAGTGTAAGACATGTCTG-GGACATGCATCGGCCATACTATGAT-A
* * *
48071121 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCATA-TATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-G-GC-CATACTATGATA
*
48071169 GCCAGTTTAAGACCATGTCTGGGACATGGCATCGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
48071204 TAATATATCC
Statistics
Matches: 251, Mismatches: 34, Indels: 58
0.73 0.10 0.17
Matches are distributed among these distances:
43 3 0.01
44 26 0.10
45 16 0.06
46 57 0.23
47 65 0.26
48 54 0.22
49 25 0.10
50 5 0.02
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATACTATGATA
Found at i:48071007 original size:94 final size:93
Alignment explanation
Indices: 48070846--48071203 Score: 394
Period size: 94 Copynumber: 3.8 Consensus size: 93
48070836 TTTGTGCGCC
* * * * *
48070846 AGTGTAAGACATGTCTGGGACATCCATCGGCCACATTATGATAGCCAGTGTAAGACCATATCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
* * *
48070911 GACATGGCATCGACATCTAGACGAGGGCT
66 GACATGGCATCGGCATCAAGA-GAGTGCT
48070940 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
*
48071005 GACATGGCATCGGCA-CAGAGATGAGTGCC
66 GACATGGCATCGGCATCA-AGA-GAGTGCT
* * **
48071034 AGTGTAAGACATGTCT-GGACATGCATCGGCC-TCGAC-AGAGATAGCCAGTGTAAGA-TGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTA-TGATAGCCAGTGTAAGACCATGTC
* *
48071095 -GTTGACAT-GCGTCGGC-T-AAGAGATGTGCT
63 TG-GGACATGGCATCGGCATCAAGAGA-GTGCT
* *
48071124 AGTGTAAGACATGTCTGGGACATGCATCAGCACGCATA-TATGAGAGCCAGTTTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGATAGCCAGTGTAAGACCATGTC
48071188 TGGGACATGGCATCGG
63 TGGGACATGGCATCGG
48071204 TAATATATCC
Statistics
Matches: 223, Mismatches: 25, Indels: 32
0.80 0.09 0.11
Matches are distributed among these distances:
89 2 0.01
90 23 0.10
91 13 0.06
92 23 0.10
93 37 0.17
94 124 0.56
95 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATCAAGAGAGTGCT
Found at i:48072962 original size:29 final size:29
Alignment explanation
Indices: 48072929--48073002 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
48072919 GTGACGAGAT
48072929 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
48072958 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
48072987 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
48073003 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:48073018 original size:29 final size:29
Alignment explanation
Indices: 48072986--48073061 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
48072976 CTGGAAATAT
* *
48072986 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
48073015 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
48073044 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
48073062 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Done.