Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 157 of 325
Found at i:48073029 original size:58 final size:58
Alignment explanation
Indices: 48072929--48073061 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
48072919 GTGACGAGAT
* * * * * *
48072929 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
48072987 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
48073045 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
48073062 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:48080835 original size:29 final size:29
Alignment explanation
Indices: 48080802--48080875 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
48080792 GTGACGAGAT
48080802 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
48080831 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
48080860 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
48080876 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:48080891 original size:29 final size:29
Alignment explanation
Indices: 48080859--48080934 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
48080849 CTGGAAATAT
* *
48080859 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
48080888 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
48080917 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
48080935 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:48080902 original size:58 final size:58
Alignment explanation
Indices: 48080802--48080934 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
48080792 GTGACGAGAT
* * * * * *
48080802 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
48080860 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
48080918 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
48080935 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:48085044 original size:9 final size:9
Alignment explanation
Indices: 48085032--48085088 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
48085022 TTTGATAAAC
48085032 ATGATATGT
1 ATGATATGT
*
48085041 ATGATATGCAC
1 ATGATATG--T
*
48085052 ATGACATGT
1 ATGATATGT
*
48085061 ATGATATGCAC
1 ATGATATG--T
48085072 ATGATATGT
1 ATGATATGT
48085081 ATGATATG
1 ATGATATG
48085089 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:48085055 original size:20 final size:20
Alignment explanation
Indices: 48085030--48085092 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
48085020 ATTTTGATAA
48085030 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
48085050 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
48085070 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
48085090 ACA
1 ACA
48085093 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:48085172 original size:24 final size:24
Alignment explanation
Indices: 48085145--48085216 Score: 110
Period size: 24 Copynumber: 3.0 Consensus size: 24
48085135 GAGGAAGTGC
48085145 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
48085169 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
48085193 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
48085217 ATGATAAAGC
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
24 34 0.76
25 11 0.24
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:48085444 original size:31 final size:31
Alignment explanation
Indices: 48085409--48085472 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
48085399 CGTTTACAGT
48085409 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
48085440 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
48085471 AA
1 AA
48085473 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:48088078 original size:24 final size:24
Alignment explanation
Indices: 48088047--48088115 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 24
48088037 TACCAATATA
* *
48088047 TCAGCTCGTAAGAGTTTACTGTTT
1 TCAGCTCGTAAGAGCTTACTGTTC
* *
48088071 TCATCTCGTTAA-AGCTTATTGTTC
1 TCAGCTCG-TAAGAGCTTACTGTTC
*
48088095 TCAGCTCGTATGAGCTTACTG
1 TCAGCTCGTAAGAGCTTACTG
48088116 GTTTAGCTTA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
23 2 0.06
24 31 0.86
25 3 0.08
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (24 bp):
TCAGCTCGTAAGAGCTTACTGTTC
Found at i:48088218 original size:26 final size:26
Alignment explanation
Indices: 48088145--48088223 Score: 103
Period size: 25 Copynumber: 3.2 Consensus size: 26
48088135 ACCGTTTCAC
48088145 CTCA-ATAGAGCTTACTGTCCATAAG
1 CTCAGATAGAGCTTACTGTCCATAAG
*
48088170 CTC-GATAGAGCTTACAGTCCATAAG
1 CTCAGATAGAGCTTACTGTCCATAAG
*
48088195 CTCAGA-AGGAGCTTACTGTTCAT-AG
1 CTCAGATA-GAGCTTACTGTCCATAAG
48088220 CTCA
1 CTCA
48088224 AAAGAGTGGA
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
25 33 0.69
26 15 0.31
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (26 bp):
CTCAGATAGAGCTTACTGTCCATAAG
Found at i:48088293 original size:27 final size:27
Alignment explanation
Indices: 48088255--48088307 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
48088245 AATTGACAGA
* *
48088255 GTACTGATGTATATCACCCGAGTATCT
1 GTACTAATGTATATCACCCAAGTATCT
48088282 GTACTAATGTATATCACCCAAGTATC
1 GTACTAATGTATATCACCCAAGTATC
48088308 CTTTGAAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (27 bp):
GTACTAATGTATATCACCCAAGTATCT
Found at i:48097714 original size:43 final size:43
Alignment explanation
Indices: 48097664--48097811 Score: 169
Period size: 43 Copynumber: 3.5 Consensus size: 43
48097654 TGAGACATCG
* *
48097664 TGTAAGACCGTGTCTGGGACACAGGCTTCG-ATTGAGATTTACA
1 TGTAAGACCATGTCTGGGACACAGGCATCGTATTGA-ATTTACA
* **
48097707 TATAAGACCATGTCTGGGACATCA-GCATCGTATTTTATTT-CA
1 TGTAAGACCATGTCTGGGACA-CAGGCATCGTATTGAATTTACA
* *
48097749 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAA-TTACA
1 TGTAAGACCATGTCTGGGACACAGGCATCG-TATTGAATTTACA
*
48097792 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCATGTCTGGGAC
48097812 GTCGACATTG
Statistics
Matches: 88, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 29 0.33
43 53 0.60
44 5 0.06
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACACAGGCATCGTATTGAATTTACA
Found at i:48104633 original size:40 final size:40
Alignment explanation
Indices: 48104578--48104785 Score: 242
Period size: 40 Copynumber: 5.2 Consensus size: 40
48104568 TGAATGATAC
* * *
48104578 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATAT
*
48104618 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATAT
*
48104658 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGA-TATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATAT
* * ** *
48104698 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATAT
* * ** *
48104738 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATAT
48104778 CC-GGCTAA
1 CCGGGCTAA
48104786 ATTCCGAAGA
Statistics
Matches: 146, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 7 0.05
40 137 0.94
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATAT
Found at i:48105029 original size:24 final size:24
Alignment explanation
Indices: 48105002--48105048 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
48104992 AAGTAAGTAT
48105002 GATTATGAGAATGTGTATTAATAC
1 GATTATGAGAATGTGTATTAATAC
*
48105026 GATTGTGAGAATGTGTATTAATA
1 GATTATGAGAATGTGTATTAATA
48105049 AAGTGATTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.36, C:0.02, G:0.23, T:0.38
Consensus pattern (24 bp):
GATTATGAGAATGTGTATTAATAC
Found at i:48107531 original size:25 final size:25
Alignment explanation
Indices: 48107458--48107532 Score: 66
Period size: 25 Copynumber: 3.0 Consensus size: 25
48107448 GTACATGTAT
* *
48107458 GCTCATATGAGCT-ATGAATAGGTAT
1 GCTCATACGAGCTGA-GAATAGGTAA
*
48107483 GCTC-TCACGAGCTGTA-AATCGGTAA
1 GCTCAT-ACGAGCTG-AGAATAGGTAA
*
48107508 GCTCATACGAGCTGAGAATTGGTAA
1 GCTCATACGAGCTGAGAATAGGTAA
48107533 CCCTAATGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
24 2 0.05
25 37 0.90
26 1 0.02
27 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (25 bp):
GCTCATACGAGCTGAGAATAGGTAA
Found at i:48108663 original size:27 final size:27
Alignment explanation
Indices: 48108568--48108671 Score: 102
Period size: 27 Copynumber: 3.9 Consensus size: 27
48108558 TGGCTGCTAG
** * *
48108568 AACAGATATTGTAACAGAGTCACCAGA
1 AACAGATATTGTGGCAAAGCCACCAGA
* *
48108595 TACAGATATTGTGGCAGAGCCACCAG-
1 AACAGATATTGTGGCAAAGCCACCAGA
* *
48108621 AACAGATATTTCTGGCATAGCCACCAGA
1 AACAGATA-TTGTGGCAAAGCCACCAGA
* *
48108649 AATAGATAATGTGGCAAAGCCAC
1 AACAGATATTGTGGCAAAGCCAC
48108672 TTAACAGAAT
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 7 0.11
27 50 0.78
28 7 0.11
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.19
Consensus pattern (27 bp):
AACAGATATTGTGGCAAAGCCACCAGA
Found at i:48109027 original size:27 final size:26
Alignment explanation
Indices: 48108975--48109053 Score: 86
Period size: 27 Copynumber: 3.0 Consensus size: 26
48108965 TCGATCGGTC
* *
48108975 AACAGATATTGTGACAAAGTCACCAG
1 AACAGATATTGTGGCAAAGCCACCAG
* * *
48109001 ATATAGATATTGTGGCAGAGCCCCCAG
1 A-ACAGATATTGTGGCAAAGCCACCAG
*
48109028 AACAGATATTTGTGGCATAGCCACCA
1 AACAGATA-TTGTGGCAAAGCCACCA
48109054 AAACGCTTCC
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
26 7 0.16
27 36 0.84
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (26 bp):
AACAGATATTGTGGCAAAGCCACCAG
Found at i:48109395 original size:27 final size:27
Alignment explanation
Indices: 48109281--48109387 Score: 160
Period size: 27 Copynumber: 4.0 Consensus size: 27
48109271 GGGGTAAAAT
* * *
48109281 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
48109308 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
48109335 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
48109362 GGTAATTCTACCCTATAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
48109388 TAGTAATTTG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:48113347 original size:71 final size:71
Alignment explanation
Indices: 48113263--48113426 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
48113253 CGATTTGTCT
48113263 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48113328 CTTTCA
66 CTTTCA
48113334 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48113399 CTTTCA
66 CTTTCA
48113405 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
48113427 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:48113464 original size:71 final size:70
Alignment explanation
Indices: 48113263--48113460 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
48113253 CGATTTGTCT
* * * *
48113263 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
48113328 CTTTCA
65 CTTTCA
* * * *
48113334 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
48113399 CTTTCA
65 CTTTCA
* *
48113405 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
48113461 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:48120921 original size:71 final size:71
Alignment explanation
Indices: 48120837--48121000 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
48120827 CGATTTGTCT
48120837 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48120902 CTTTCA
66 CTTTCA
48120908 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48120973 CTTTCA
66 CTTTCA
48120979 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
48121001 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:48121038 original size:71 final size:70
Alignment explanation
Indices: 48120837--48121034 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
48120827 CGATTTGTCT
* * * *
48120837 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
48120902 CTTTCA
65 CTTTCA
* * * *
48120908 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
48120973 CTTTCA
65 CTTTCA
* *
48120979 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
48121035 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:48123425 original size:28 final size:29
Alignment explanation
Indices: 48123363--48123426 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
48123353 GTGACGAGAT
** *
48123363 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCAAGCTGGAAAAATA
*
48123392 TGGCACTAAGTGTGCAAGCT-GAAAAATA
1 CGGCACTAAGTGTGCAAGCTGGAAAAATA
48123420 CGGCACT
1 CGGCACT
48123427 GGGTGTGCGA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 13 0.43
29 17 0.57
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCAAGCTGGAAAAATA
Found at i:48130809 original size:24 final size:24
Alignment explanation
Indices: 48130782--48130964 Score: 276
Period size: 24 Copynumber: 7.6 Consensus size: 24
48130772 CTTATTATGT
* * *
48130782 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
48130806 TCGCACACGTAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
48130830 TCGCACACTTAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
48130854 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
48130878 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
48130902 TCGCACACATAGTGCCATAGTAAG
1 TCGCACACATAGTGCCATAGTAAA
*
48130926 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
48130950 TCGCACACATAGTGC
1 TCGCACACATAGTGC
48130965 ATTTGAGATA
Statistics
Matches: 148, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 148 1.00
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:48130819 original size:48 final size:48
Alignment explanation
Indices: 48130760--48130964 Score: 229
Period size: 48 Copynumber: 4.3 Consensus size: 48
48130750 ACCGAATGTG
* * * * *
48130760 GCACACATAGTGCTTATTATGTTCGCACACATAGAGCTATAGCAAATC
1 GCACACATAGTGCTTAGTATGATCGCACACATAGTGCCATAGTAAATC
* * *
48130808 GCACACGTAGTGCTATAGTA-AATCGCACACTTAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATGATCGCACACATAGTGCCATAGTAAATC
* *
48130856 GCACACATAGTGC-CA-TAGTGAATCGCACACATAGTGCCATAGTGAATC
1 GCACACATAGTGCTTAGTA-TG-ATCGCACACATAGTGCCATAGTAAATC
* * *
48130904 GCACACATAGTGCCATAGTAAG-TCGCACACATAGTGCCATAGTGAATC
1 GCACACATAGTG-CTTAGTATGATCGCACACATAGTGCCATAGTAAATC
48130952 GCACACATAGTGC
1 GCACACATAGTGC
48130965 ATTTGAGATA
Statistics
Matches: 135, Mismatches: 15, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
45 2 0.01
46 1 0.01
47 1 0.01
48 122 0.90
49 5 0.04
50 2 0.01
51 2 0.01
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATGATCGCACACATAGTGCCATAGTAAATC
Found at i:48137810 original size:28 final size:28
Alignment explanation
Indices: 48137778--48137857 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
48137768 CATACATGCT
* *
48137778 TATGGCCCACTAGGCCCAATCTCAT-TCA
1 TATGGCCCAATAGGCCCAATCACATCT-A
* * *
48137806 TATGGACCATTAGGCCTAAATCACATCTA
1 TATGGCCCAATAGGCC-CAATCACATCTA
*
48137835 TATGGCACAATAGGCCCAATCAC
1 TATGGCCCAATAGGCCCAATCAC
48137858 TTTTACAGTA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
28 20 0.48
29 21 0.50
30 1 0.02
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (28 bp):
TATGGCCCAATAGGCCCAATCACATCTA
Found at i:48143562 original size:22 final size:21
Alignment explanation
Indices: 48143533--48143573 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
48143523 GTTACAACCC
*
48143533 AAATAAAATAGTAATAATTTA
1 AAATAAAATAGTAAAAATTTA
*
48143554 AAATCAAAATATTAAAAATT
1 AAAT-AAAATAGTAAAAATT
48143574 ACATAAAGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.32
Consensus pattern (21 bp):
AAATAAAATAGTAAAAATTTA
Found at i:48144552 original size:28 final size:28
Alignment explanation
Indices: 48144516--48144595 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
48144506 CATACATGCT
* *
48144516 TATGACCCACTAGGCCCAATCTCAT-TCA
1 TATGGCCCACTAGGCCCAATCACATCT-A
* **
48144544 TATGGCCCATTAGGTCAAAATCACATCTA
1 TATGGCCCACTAGG-CCCAATCACATCTA
*
48144573 TATGGCCCACTAGGACCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
48144596 TTTTACAGTC
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
28 18 0.44
29 22 0.54
30 1 0.02
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.24
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATCTA
Found at i:48144850 original size:8 final size:8
Alignment explanation
Indices: 48144823--48144865 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
48144813 AATTTTGGCT
*
48144823 TTTCGACA
1 TTTCGGCA
* *
48144831 TTTCAGCT
1 TTTCGGCA
48144839 TTTCGGCA
1 TTTCGGCA
48144847 TTTCGGCA
1 TTTCGGCA
*
48144855 TTTCGGGA
1 TTTCGGCA
48144863 TTT
1 TTT
48144866 ACCGATCTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.44
Consensus pattern (8 bp):
TTTCGGCA
Found at i:48151288 original size:40 final size:40
Alignment explanation
Indices: 48151228--48151448 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
48151218 TATTCGAATG
* *
48151228 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * *
48151268 ATATCTGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
*
48151308 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
48151348 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
48151388 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
48151428 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
48151449 ATACTTGGGT
Statistics
Matches: 159, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.09
40 140 0.88
41 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:48151716 original size:22 final size:22
Alignment explanation
Indices: 48151676--48151717 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
48151666 GAATGTGCAT
*
48151676 ATATGAAGTTATTCATTTAGAC
1 ATATGAAGTTATACATTTAGAC
48151698 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
48151718 TCGAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGAC
Found at i:48153100 original size:19 final size:20
Alignment explanation
Indices: 48153076--48153113 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
48153066 CAAGCATATA
48153076 AAAGAAAA-GAAAAAAAATC
1 AAAGAAAATGAAAAAAAATC
*
48153095 AAAGAAAATGTAAAAAAAT
1 AAAGAAAATGAAAAAAAAT
48153114 TAGGCAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.76, C:0.03, G:0.11, T:0.11
Consensus pattern (20 bp):
AAAGAAAATGAAAAAAAATC
Found at i:48155824 original size:46 final size:46
Alignment explanation
Indices: 48155683--48155854 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
48155673 GGTTGAGCAT
* *
48155683 CCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * * *
48155728 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTA-AC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATGGATGCGAACGC
*
48155772 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
48155820 CCGAGCTCGTTGAGTTGAGT-CGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48155855 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
44 2 0.02
45 44 0.42
46 55 0.52
47 2 0.02
48 3 0.03
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:48155844 original size:91 final size:91
Alignment explanation
Indices: 48155679--48155847 Score: 286
Period size: 91 Copynumber: 1.9 Consensus size: 91
48155669 GGATGGTTGA
* *
48155679 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAACGCCCGAACTCGTTGAGTT
48155744 GAGTCCGAGTTCGTGAATGTAACTAG
66 GAGTCCGAGTTCGTGAATGTAACTAG
* *
48155770 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAACGCCCGAACTCGTTGAGT
48155835 TGAGT-CGAGTTCG
65 TGAGTCCGAGTTCG
48155848 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 40 0.55
92 33 0.45
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (91 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAATGTAACTAG
Found at i:48163400 original size:93 final size:93
Alignment explanation
Indices: 48163241--48163412 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
48163231 GGATGGTTGA
* * * *
48163241 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
48163306 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
48163334 GCATCCGAGCTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
48163399 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
48163413 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:48163417 original size:46 final size:46
Alignment explanation
Indices: 48163245--48163419 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
48163235 GGTTGAGCAT
* * *
48163245 CCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
48163291 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
* *
48163336 ATCCGAGCTCGTTGAGTTGAGTCCGACTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
48163384 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48163420 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 3 0.03
46 62 0.58
47 26 0.25
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:48165142 original size:23 final size:23
Alignment explanation
Indices: 48165116--48165174 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 23
48165106 GGAATTATGG
48165116 GTTAATAGGTGTTTTAA-TTAGAA
1 GTTAATAGG-GTTTTAAGTTAGAA
* *
48165139 GTTAGTATGGTTTTAAGTTAGAA
1 GTTAATAGGGTTTTAAGTTAGAA
48165162 ---AATAGGGTTTTAA
1 GTTAATAGGGTTTTAA
48165175 AGGGTTAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
20 11 0.35
22 7 0.23
23 13 0.42
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.42
Consensus pattern (23 bp):
GTTAATAGGGTTTTAAGTTAGAA
Found at i:48169757 original size:50 final size:47
Alignment explanation
Indices: 48169588--48169758 Score: 180
Period size: 47 Copynumber: 3.6 Consensus size: 47
48169578 GGTATAATGC
* * * * **
48169588 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCACGCTAAGT
1 CGATGCCATGTCCTAGACATGGTCTTACACTGACTCCCACATTAAGT
* * * * *
48169635 CAACGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTTAAGT
1 CGATGCCATGTCCTAGACATGGTCTTACACTGACTCCCACATTAAGT
* * **
48169682 CGATTCCATGTCCTAAACATGGTCTTACACTGACTCCCACATATCTGT
1 CGATGCCATGTCCTAGACATGGTCTTACACTGACTCCCACAT-TAAGT
48169730 GCCGATGCCATGTCCTAGACATGGTCTTA
1 --CGATGCCATGTCCTAGACATGGTCTTA
48169759 TACTAACACA
Statistics
Matches: 105, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
47 77 0.73
48 3 0.03
50 25 0.24
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTGACTCCCACATTAAGT
Found at i:48169834 original size:46 final size:45
Alignment explanation
Indices: 48169779--48169946 Score: 142
Period size: 46 Copynumber: 3.6 Consensus size: 45
48169769 TCATGTAGCT
*
48169779 GATGCATGTCCCAAACATGTCTTACAGTGGCTTACATCTCGAGGCC
1 GATGCATGTCCCAAACATGTCTTACACTGGCTT-CATCTCGAGGCC
* * * * * ** *
48169825 GATGTATGTCCTAGACATGTCTTACATTAGCTCTTGTCTCAATGG-C
1 GATGCATGTCCCAAACATGTCTTACACTGGCT-TCATCTCGA-GGCC
* *
48169871 GATGCCATGTCCCAAACATGGTCTTACACTGGCTTTCATAAT-GTGGCC
1 GATG-CATGTCCCAAACAT-GTCTTACACTGGC-TTCAT-CTCGAGGCC
* *
48169919 GATGCATGTCCTAGACATGTCTTACACT
1 GATGCATGTCCCAAACATGTCTTACACT
48169947 AGCACACAAA
Statistics
Matches: 95, Mismatches: 20, Indels: 14
0.74 0.16 0.11
Matches are distributed among these distances:
46 47 0.49
47 28 0.29
48 18 0.19
49 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (45 bp):
GATGCATGTCCCAAACATGTCTTACACTGGCTTCATCTCGAGGCC
Found at i:48169897 original size:94 final size:92
Alignment explanation
Indices: 48169779--48169949 Score: 254
Period size: 94 Copynumber: 1.8 Consensus size: 92
48169769 TCATGTAGCT
* * *
48169779 GATGCATGTCCCAAACATGTCTTACAGTGGCTTACAT-CTCGAGGCCGATGTATGTCCTAGACAT
1 GATGCATGTCCCAAACATGTCTTACACTGGCTTACATAAT-GAGGCCGATGCATGTCCTAGACAT
*
48169843 GTCTTACATTAGCTCTTGTCTCAATGGC
65 GTCTTACACTAGCTCTTGTCTCAATGGC
* *
48169871 GATGCCATGTCCCAAACATGGTCTTACACTGGCTTTCATAATGTGGCCGATGCATGTCCTAGACA
1 GATG-CATGTCCCAAACAT-GTCTTACACTGGCTTACATAATGAGGCCGATGCATGTCCTAGACA
48169936 TGTCTTACACTAGC
64 TGTCTTACACTAGC
48169950 ACACAAATAA
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
92 4 0.06
93 14 0.20
94 51 0.73
95 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (92 bp):
GATGCATGTCCCAAACATGTCTTACACTGGCTTACATAATGAGGCCGATGCATGTCCTAGACATG
TCTTACACTAGCTCTTGTCTCAATGGC
Found at i:48173460 original size:40 final size:40
Alignment explanation
Indices: 48173405--48173572 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
48173395 TGAATGATAC
* *
48173405 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
48173445 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * ** *
48173485 CTGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
48173525 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
48173565 CC-GGCTAA
1 CCGGGCTAA
48173573 ATTCCAAAGA
Statistics
Matches: 104, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
39 6 0.06
40 96 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:48178623 original size:43 final size:43
Alignment explanation
Indices: 48178575--48178661 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
48178565 TGTTAGAGTG
48178575 AGAATTTGATGTTGCAATAGAAGGGAAAAGTGATCAAGATGTC
1 AGAATTTGATGTTGCAATAGAAGGGAAAAGTGATCAAGATGTC
48178618 AGAATTTGATGTTGCAATAGAAGGGAAAAGTGATCAAGATGTC
1 AGAATTTGATGTTGCAATAGAAGGGAAAAGTGATCAAGATGTC
48178661 A
1 A
48178662 TAAAACATAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.40, C:0.07, G:0.28, T:0.25
Consensus pattern (43 bp):
AGAATTTGATGTTGCAATAGAAGGGAAAAGTGATCAAGATGTC
Found at i:48184764 original size:28 final size:29
Alignment explanation
Indices: 48184722--48184836 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
48184712 TACCTGTATC
48184722 TGGCCCATTAAGCCC-AATCACATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
* *
48184750 TGGCCCATTAGGCCCAAATCAC-TTGTATA
1 TGGCCCATTAAGCCCAAATCACATT-CATA
*
48184779 TGGCCCATTAAGCCCAAATCACATTTATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
* * * *
48184808 TGGCCCGTTAGGCCC-AGTTACATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
48184836 T
1 T
48184837 TCATCCTCAC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 27 0.36
29 47 0.62
30 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAAGCCCAAATCACATTCATA
Found at i:48184779 original size:29 final size:29
Alignment explanation
Indices: 48184722--48184823 Score: 145
Period size: 29 Copynumber: 3.6 Consensus size: 29
48184712 TACCTGTATC
*
48184722 TGGCCCATTAAGCCC-AATCACATTCATA
1 TGGCCCATTAAGCCCAAATCACATTTATA
*
48184750 TGGCCCATTAGGCCCAAATCAC-TTGTATA
1 TGGCCCATTAAGCCCAAATCACATT-TATA
48184779 TGGCCCATTAAGCCCAAATCACATTTATA
1 TGGCCCATTAAGCCCAAATCACATTTATA
* *
48184808 TGGCCCGTTAGGCCCA
1 TGGCCCATTAAGCCCA
48184824 GTTACATTCA
Statistics
Matches: 66, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
28 16 0.24
29 48 0.73
30 2 0.03
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.25
Consensus pattern (29 bp):
TGGCCCATTAAGCCCAAATCACATTTATA
Found at i:48186498 original size:40 final size:40
Alignment explanation
Indices: 48186453--48186616 Score: 195
Period size: 40 Copynumber: 4.1 Consensus size: 40
48186443 CGGAATTTAT
* * * *
48186453 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* *** *
48186493 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* *
48186533 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* *
48186573 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTAGCACAAATGCCTTCGGGTCTTAGC
48186613 CCGG
1 CCGG
48186617 GTATCATTCA
Statistics
Matches: 104, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 103 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48190286 original size:28 final size:29
Alignment explanation
Indices: 48190244--48190358 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
48190234 TACCTGTATC
48190244 TGGCCCATTAAGCCC-AATCACATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
* *
48190272 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAAGCCCAAATCACAT-TCATA
*
48190301 TGGCCCATTAAGCCCAAATCACATTTATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
* * * *
48190330 TGGCCCGTTAGGCCC-AGTTACATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
48190358 T
1 T
48190359 TCATCCTCAC
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 26 0.35
29 48 0.64
30 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAAGCCCAAATCACATTCATA
Found at i:48190298 original size:57 final size:58
Alignment explanation
Indices: 48190235--48190345 Score: 188
Period size: 58 Copynumber: 1.9 Consensus size: 58
48190225 AAATTCACAT
*
48190235 ACCTGTATCTGGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* *
48190292 ACCTGTATATGGCCCATTAAGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCA
48190346 GTTACATTCA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
57 23 0.46
58 27 0.54
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:48190301 original size:29 final size:29
Alignment explanation
Indices: 48190238--48190345 Score: 139
Period size: 29 Copynumber: 3.8 Consensus size: 29
48190228 TTCACATACC
*
48190238 TGTATCTGGCCCATTAAGCCC-AATCACA
1 TGTATATGGCCCATTAAGCCCAAATCACA
* *
48190266 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAAGCCCAAATCACA
48190295 TGTATATGGCCCATTAAGCCCAAATCACA
1 TGTATATGGCCCATTAAGCCCAAATCACA
* * *
48190324 TTTATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAAGCCCA
48190346 GTTACATTCA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.01
28 17 0.25
29 50 0.72
30 1 0.01
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
TGTATATGGCCCATTAAGCCCAAATCACA
Found at i:48191243 original size:40 final size:40
Alignment explanation
Indices: 48191188--48191286 Score: 146
Period size: 40 Copynumber: 2.5 Consensus size: 40
48191178 CTATTTAATT
* *
48191188 CCTTCGGGACTTAGCCCGGATATAA-CAGCTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAATCA-CTAGCACAAATG
* *
48191228 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
48191268 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
48191287 GTATCATTCA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
40 51 0.96
41 2 0.04
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
Found at i:48197298 original size:29 final size:29
Alignment explanation
Indices: 48197232--48197369 Score: 199
Period size: 29 Copynumber: 4.8 Consensus size: 29
48197222 AAATTCACAT
*
48197232 ACCTGTATTTGGCCCATTAAGCCC-AATC
1 ACCTGTATATGGCCCATTAAGCCCAAATC
* *
48197260 ACAT-TCATATGGCCCATTAGGCCCAAATC
1 ACCTGT-ATATGGCCCATTAAGCCCAAATC
48197289 ACCTGTATATGGCCCATTAAGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATC
48197318 ACCTGTATATGGCCCATTAAGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATC
* * *
48197347 ACATTTATATGGCCCGTTAAGCC
1 ACCTGTATATGGCCCATTAAGCC
48197370 TAGTCAAATT
Statistics
Matches: 99, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
27 1 0.01
28 19 0.19
29 78 0.79
30 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.26
Consensus pattern (29 bp):
ACCTGTATATGGCCCATTAAGCCCAAATC
Found at i:48202359 original size:17 final size:17
Alignment explanation
Indices: 48202339--48202371 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
48202329 AAAATTGGGT
48202339 TGAGAAAAAAATTTAAA
1 TGAGAAAAAAATTTAAA
*
48202356 TGAGAAAATAATTTAA
1 TGAGAAAAAAATTTAA
48202372 TTAAACTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (17 bp):
TGAGAAAAAAATTTAAA
Found at i:48208449 original size:46 final size:48
Alignment explanation
Indices: 48208392--48208522 Score: 139
Period size: 47 Copynumber: 2.8 Consensus size: 48
48208382 ATGTTTGGGC
*
48208392 ATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACTAG
* * * * *
48208439 -TCCGAACTCGTTGAGTTAAGTCTGAGTTC-GTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTA-G
48208484 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48208523 GCGGGTTACA
Statistics
Matches: 66, Mismatches: 10, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
42 2 0.03
43 5 0.08
45 3 0.05
46 26 0.39
47 27 0.41
48 2 0.03
50 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.31
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTAG
Found at i:48211486 original size:15 final size:15
Alignment explanation
Indices: 48211466--48211534 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
48211456 ATATCTTGGG
48211466 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
48211481 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
48211496 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
48211511 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
48211526 TTTCTTTAT
1 TTTCTTTAT
48211535 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:48211535 original size:30 final size:30
Alignment explanation
Indices: 48211457--48211544 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
48211447 CATAATATCA
* * * *
48211457 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
48211487 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
48211517 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
48211545 TATTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:48213259 original size:40 final size:40
Alignment explanation
Indices: 48213152--48213281 Score: 131
Period size: 40 Copynumber: 3.2 Consensus size: 40
48213142 CGGAATATAA
* *
48213152 CCGGATATAATC-ACGT-GCACAAATGCCTTTGGGTCTTAGC
1 CCGGATATAA-CAAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
48213192 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
48213232 CCGGATATAGCCACTAGCAC-ATTTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACGA-ATGCCTTCGGGTCTTAGC
48213272 CCGGATATAA
1 CCGGATATAA
48213282 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
39 2 0.03
40 73 0.97
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:48217129 original size:46 final size:46
Alignment explanation
Indices: 48217079--48217254 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
48217069 TGTTTGGGCA
48217079 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
48217125 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
48217170 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
48217218 CCCGAGCTCGTTGAGTTGAGTCCGAATTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48217255 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:48229213 original size:16 final size:16
Alignment explanation
Indices: 48229192--48229223 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
48229182 TCAACACAAG
48229192 TATATTCACATACATA
1 TATATTCACATACATA
*
48229208 TATATTTACATACATA
1 TATATTCACATACATA
48229224 CCAAATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.41
Consensus pattern (16 bp):
TATATTCACATACATA
Found at i:48232077 original size:40 final size:40
Alignment explanation
Indices: 48232018--48232210 Score: 224
Period size: 40 Copynumber: 4.8 Consensus size: 40
48232008 CAATTGAATG
* * * *
48232018 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
48232058 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* **
48232098 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
48232138 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* *
48232178 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
48232211 TGTGGTTATA
Statistics
Matches: 131, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 131 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:48242335 original size:28 final size:28
Alignment explanation
Indices: 48242270--48242370 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
48242260 ATAGTGAATC
*
48242270 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
48242299 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
48242327 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
48242357 CGCACACTTAGTGC
1 CGCACACTTAGTGC
48242371 CATACCCTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:48242419 original size:29 final size:29
Alignment explanation
Indices: 48242358--48242488 Score: 165
Period size: 29 Copynumber: 4.5 Consensus size: 29
48242348 TTTTAAACCC
*** *
48242358 GCACACTTAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
48242386 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
*
48242416 GCACACTTAGTGCCACATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
48242445 GCACACTTAGTGCCATATATTTTCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
48242474 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
48242489 ATCTCGTCAC
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
29 87 0.99
30 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:48248707 original size:16 final size:17
Alignment explanation
Indices: 48248686--48248718 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
48248676 AATTGTGTTT
*
48248686 AATGAATTG-ATGTGTA
1 AATGAAATGTATGTGTA
48248702 AATGAAATGTATGTGTA
1 AATGAAATGTATGTGTA
48248719 TGGAATGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.36
Consensus pattern (17 bp):
AATGAAATGTATGTGTA
Found at i:48248916 original size:29 final size:28
Alignment explanation
Indices: 48248849--48248920 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
48248839 AAAATTGTAC
* * *
48248849 AGCACTAAGTGTGCAAGCTTGATTCTAT
1 AGCACTAAGTGTGCGAGCTTGAATATAT
48248877 AGCACTAAGTGTGCGAGC-TGAAAATATAT
1 AGCACTAAGTGTGCGAGCTTG--AATATAT
48248906 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
48248921 GATTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 17 0.44
29 20 0.51
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTTGAATATAT
Found at i:48252238 original size:21 final size:21
Alignment explanation
Indices: 48252213--48252256 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
48252203 TATCCAGATT
48252213 TTTCCGGAGGAGTTACCGGGA
1 TTTCCGGAGGAGTTACCGGGA
48252234 TTTCCGGAGGAGTTACCGGGA
1 TTTCCGGAGGAGTTACCGGGA
48252255 TT
1 TT
48252257 GCCACCGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.27
Consensus pattern (21 bp):
TTTCCGGAGGAGTTACCGGGA
Found at i:48257789 original size:80 final size:80
Alignment explanation
Indices: 48257705--48257853 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
48257695 TATGGTAACC
* * * *
48257705 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
48257769 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
48257785 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
48257850 CCGG
66 CCGG
48257854 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:48257795 original size:40 final size:38
Alignment explanation
Indices: 48257746--48257853 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
48257736 ATCACGATTT
*
48257746 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
48257786 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
48257826 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
48257854 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:48266614 original size:40 final size:40
Alignment explanation
Indices: 48266556--48266739 Score: 205
Period size: 39 Copynumber: 4.7 Consensus size: 40
48266546 CGTTCAAACA
* * ***
48266556 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * *
48266596 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * * *
48266636 CCTTCGGG-CTTAGCCCGGATATCATAGCTCGCAC-ATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
** *
48266674 CCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
48266713 CCTTCGGG-CTTAGCCCGGATATCACAA
1 CCTTCGGGACTTAGCCCGGATATCACAA
48266740 TTCGCACATT
Statistics
Matches: 129, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 35 0.27
39 54 0.42
40 40 0.31
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
Found at i:48266683 original size:38 final size:39
Alignment explanation
Indices: 48266586--48266747 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
48266576 TATGGTAACC
* *
48266586 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
48266626 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
48266665 CGCAC-ATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
48266703 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
48266742 CGCACA
1 CGCACA
48266748 TTCATACACA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 35 0.31
39 62 0.54
40 17 0.15
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:48266745 original size:77 final size:78
Alignment explanation
Indices: 48266594--48266749 Score: 260
Period size: 77 Copynumber: 2.0 Consensus size: 78
48266584 CCCGCACAAA
48266594 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
* *
48266659 ATAGCTCGCACAT
66 ACAACTCGCACAT
* *
48266672 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
*
48266736 ACAATTCGCACAT
66 ACAACTCGCACAT
48266749 T
1 T
48266750 CATACACATC
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
77 63 0.86
78 10 0.14
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (78 bp):
TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
ACAACTCGCACAT
Found at i:48274728 original size:40 final size:40
Alignment explanation
Indices: 48274664--48274852 Score: 199
Period size: 38 Copynumber: 4.8 Consensus size: 40
48274654 GCTACTCGTT
* * * ***
48274664 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
48274704 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
48274744 CAATTGCCTTCGGG-CTTAGCCCGGATATCATATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* **
48274783 C-ATTGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
48274821 C-ATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
48274853 TTCGCACATT
Statistics
Matches: 134, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
38 66 0.49
39 23 0.17
40 45 0.34
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:48274797 original size:38 final size:38
Alignment explanation
Indices: 48274708--48274862 Score: 249
Period size: 38 Copynumber: 4.0 Consensus size: 38
48274698 CCCGCACAAA
* *
48274708 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCAC-AT
*
48274748 TGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACAT
48274786 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAT
48274824 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAT
48274862 T
1 T
48274863 CATACACATC
Statistics
Matches: 109, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
38 76 0.70
39 23 0.21
40 10 0.09
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (38 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAT
Found at i:48280130 original size:34 final size:35
Alignment explanation
Indices: 48280074--48280158 Score: 111
Period size: 34 Copynumber: 2.5 Consensus size: 35
48280064 GCGAATACAT
* *
48280074 TCTGGGCCTAAGCCTATATTAGTAAT-AGT-AATAG
1 TCTGGGCCTAAGCCCATATTAGT-ATCAGTAAACAG
* *
48280108 TCTGGGCCTTAGCCCATTTTAGTATCAGTAAACAG
1 TCTGGGCCTAAGCCCATATTAGTATCAGTAAACAG
48280143 TCTGGGCCTAAGCCCA
1 TCTGGGCCTAAGCCCA
48280159 CCTCAATACA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
33 2 0.05
34 23 0.52
35 19 0.43
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (35 bp):
TCTGGGCCTAAGCCCATATTAGTATCAGTAAACAG
Found at i:48280387 original size:21 final size:21
Alignment explanation
Indices: 48280361--48280431 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
48280351 GCGGCACTAA
48280361 CAGTATTTACAGCAGAGCTGC
1 CAGTATTTACAGCAGAGCTGC
* * ***
48280382 CAGTA-TAATCGGCTTAGAGCCAT
1 CAGTATTTA-CAGC--AGAGCTGC
48280405 CAGTGATTTACAGCAGAGCTGC
1 CAGT-ATTTACAGCAGAGCTGC
48280427 CAGTA
1 CAGTA
48280432 CAGTACACTT
Statistics
Matches: 35, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
20 2 0.06
21 9 0.26
22 9 0.26
23 9 0.26
24 4 0.11
25 2 0.06
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.24
Consensus pattern (21 bp):
CAGTATTTACAGCAGAGCTGC
Found at i:48280624 original size:27 final size:27
Alignment explanation
Indices: 48280594--48280667 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
48280584 CTTACCATAT
48280594 AAGGGCAAAACAGTCATTTTGCCTCAC
1 AAGGGCAAAACAGTCATTTTGCCTCAC
* * *
48280621 AAGGGAAAAACAATCATTTTGCCTCAG
1 AAGGGCAAAACAGTCATTTTGCCTCAC
*
48280648 AAGGGCAAAATAGTCATTTT
1 AAGGGCAAAACAGTCATTTT
48280668 ACCCTACAGG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (27 bp):
AAGGGCAAAACAGTCATTTTGCCTCAC
Found at i:48280728 original size:27 final size:27
Alignment explanation
Indices: 48280659--48280806 Score: 163
Period size: 27 Copynumber: 5.5 Consensus size: 27
48280649 AGGGCAAAAT
** * *
48280659 AGTCATTTTACCCTACAGGGGAATTAC
1 AGTCATTTTACCCTATGGGGGTATTTC
48280686 AGTCATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTATGGGGGTATTTC
*
48280713 AGTCATTTTACCCTATGGGGGTATTTG
1 AGTCATTTTACCCTATGGGGGTATTTC
* * * *
48280740 GGTGATTTGACCCTATGGCGGTATTTC
1 AGTCATTTTACCCTATGGGGGTATTTC
* *
48280767 -GATCATTTTACCATATGGGGATATTTC
1 AG-TCATTTTACCCTATGGGGGTATTTC
* *
48280794 GGTTATTTTACCC
1 AGTCATTTTACCC
48280807 GATTAAGGGT
Statistics
Matches: 102, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 100 0.98
28 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.39
Consensus pattern (27 bp):
AGTCATTTTACCCTATGGGGGTATTTC
Found at i:48304009 original size:40 final size:39
Alignment explanation
Indices: 48303964--48304093 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
48303954 CGGAACATAA
48303964 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
48304004 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
48304044 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
48304084 CCGGATATAA
1 CCGGATATAA
48304094 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:48310755 original size:24 final size:24
Alignment explanation
Indices: 48310723--48310769 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
48310713 CTGTCAGGAG
*
48310723 AGGATTTAGGAGTTCATAAGGGAT
1 AGGATTTAGGAGTACATAAGGGAT
*
48310747 AGGATTTAGGAGTAGATAAGGGA
1 AGGATTTAGGAGTACATAAGGGA
48310770 GGAAATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.02, G:0.36, T:0.26
Consensus pattern (24 bp):
AGGATTTAGGAGTACATAAGGGAT
Found at i:48312230 original size:27 final size:28
Alignment explanation
Indices: 48312172--48312282 Score: 117
Period size: 27 Copynumber: 4.1 Consensus size: 28
48312162 AGGAAGCGTC
* *
48312172 CTGGTGGCTATGCCA-A-ATTATCTGAT
1 CTGGTGGCTCTGCCACATATTATCTGTT
48312198 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACATATTATCTGTT
*
48312225 CTGGTGGCTCTGCCAC-GATTATCTGTAT
1 CTGGTGGCTCTGCCACATATTATCTGT-T
* * *
48312253 CTAGTGACTCTG--TCATATTATCTGTT
1 CTGGTGGCTCTGCCACATATTATCTGTT
48312279 CTGG
1 CTGG
48312283 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
26 22 0.31
27 36 0.50
28 14 0.19
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.39
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACATATTATCTGTT
Found at i:48312270 original size:53 final size:53
Alignment explanation
Indices: 48312172--48312282 Score: 136
Period size: 53 Copynumber: 2.1 Consensus size: 53
48312162 AGGAAGCGTC
* *
48312172 CTGGTGGCTATGCCAAATTATCTGATCTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTATGCCAAATTATCTGATCTAGTGACTCTG-CACATATTATCTGTT
* * *
48312225 CTGGTGGCTCTGCCACGATTATCTGTATCTAGTGACTCTG-TCATATTATCTGTT
1 CTGGTGGCTATGCCA-AATTATCTG-ATCTAGTGACTCTGCACATATTATCTGTT
48312279 CTGG
1 CTGG
48312283 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
53 20 0.40
54 18 0.36
55 12 0.24
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.39
Consensus pattern (53 bp):
CTGGTGGCTATGCCAAATTATCTGATCTAGTGACTCTGCACATATTATCTGTT
Found at i:48313587 original size:28 final size:29
Alignment explanation
Indices: 48313554--48313660 Score: 112
Period size: 29 Copynumber: 3.7 Consensus size: 29
48313544 TACATACATG
*
48313554 CATATGGCCCACTT-GGCCCAA-TCTTATT
1 CATATGGCCCA-TTAGGCCCAATTCTCATT
*
48313582 TATATGGCCCATTAGGCCCAATTCTCATT
1 CATATGGCCCATTAGGCCCAATTCTCATT
* * *
48313611 CATAAGGCCCATCAGGACCAATTCAT-ATT
1 CATATGGCCCATTAGGCCCAATTC-TCATT
* *
48313640 CATATGGCCCCTTAAGCCCAA
1 CATATGGCCCATTAGGCCCAA
48313661 ATCACATGCA
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
27 2 0.03
28 17 0.26
29 45 0.69
30 1 0.02
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.28
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAATTCTCATT
Found at i:48315074 original size:27 final size:27
Alignment explanation
Indices: 48315012--48315091 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
48315002 AGGAAGCGTC
*
48315012 CTGGTGGCTATGCCACAAATTATCTGA
1 CTGGTGGCTCTGCCACAAATTATCTGA
* * *
48315039 CTTGCTGGCTCTGCCACATATT-TCTGTT
1 C-TGGTGGCTCTGCCACAAATTATCTG-A
*
48315067 CTGGTGGCTCTGCCAC-GATTATCTG
1 CTGGTGGCTCTGCCACAAATTATCTG
48315092 TATCTAGTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
26 3 0.07
27 23 0.52
28 18 0.41
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATTATCTGA
Found at i:48315092 original size:27 final size:26
Alignment explanation
Indices: 48315012--48315106 Score: 75
Period size: 28 Copynumber: 3.5 Consensus size: 26
48315002 AGGAAGCGTC
* *
48315012 CTGGTGGCTATGCCACAAATTATCTG-A
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
* *
48315039 CTTGCTGGCTCTGCCACATATTTCTGTT
1 C-TGGTGGCTCTGCCACAT-TATCTGTT
48315067 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
48315095 CTAGTGACTCTG
1 CTGGTGGCTCTG
48315107 TAGTAAATTC
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
26 2 0.04
27 26 0.47
28 27 0.49
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:48320557 original size:40 final size:40
Alignment explanation
Indices: 48320512--48320641 Score: 151
Period size: 40 Copynumber: 3.2 Consensus size: 40
48320502 CGGAATACAA
48320512 CCGGATATAACCATGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCATGTGCACGAATGCCTTCGGGTCTTAGC
* *
48320552 CCGGATAGAACGACT-TGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCA-TGTGCACGAATGCCTTCGGGTCTTAGC
* * *
48320592 CCGGATGTAGCC--GCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCATG-T-GCACGAA-TGCCTTCGGGTCTTAGC
48320632 CCGGATATAA
1 CCGGATATAA
48320642 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 9, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
39 3 0.04
40 72 0.95
41 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCATGTGCACGAATGCCTTCGGGTCTTAGC
Found at i:48329295 original size:24 final size:24
Alignment explanation
Indices: 48329265--48329507 Score: 414
Period size: 24 Copynumber: 10.1 Consensus size: 24
48329255 GAATGTGACT
* *
48329265 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
48329289 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48329313 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
48329337 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
48329361 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48329385 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
48329409 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
48329433 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48329457 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
48329481 ATAGTAAACCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
48329505 ATA
1 ATA
48329508 TGGTCTTTGC
Statistics
Matches: 212, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 212 1.00
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:48331813 original size:40 final size:39
Alignment explanation
Indices: 48331768--48331897 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
48331758 CGGAATACAA
48331768 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
48331808 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
48331848 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
48331888 CCGGATATAA
1 CCGGATATAA
48331898 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:48333784 original size:48 final size:48
Alignment explanation
Indices: 48333713--48334292 Score: 899
Period size: 48 Copynumber: 12.0 Consensus size: 48
48333703 CAAGATAAAT
*
48333713 AAATATATGCGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
* * * * *
48333761 AAATATGTATGAGATATGAATATGTGGTAAAGCCTAATGGCGAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
*
48333809 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
*
48333857 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGTGAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
* * * *
48333905 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
*
48333953 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAGTGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
*
48334001 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
48334049 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
* * * *
48334097 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
*
48334145 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
* * *
48334193 AAATATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAATGTG
1 -AA-ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
* * * * *
48334243 AAATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
48334291 AA
1 AA
48334293 TGTTGTAACA
Statistics
Matches: 488, Mismatches: 42, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
48 442 0.91
49 4 0.01
50 42 0.09
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
Found at i:48334378 original size:37 final size:37
Alignment explanation
Indices: 48334337--48334444 Score: 189
Period size: 37 Copynumber: 2.9 Consensus size: 37
48334327 GGAAATATAT
* *
48334337 TCCGGGTGAGACCCGATGACTACTTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
48334374 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
48334411 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
48334445 TCGTCTGAGC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:48339560 original size:31 final size:31
Alignment explanation
Indices: 48339522--48339585 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
48339512 CCTTTTCATA
48339522 TTTCATATTTCATAACACTGGGCCGAAACCT
1 TTTCATATTTCATAACACTGGGCCGAAACCT
** *
48339553 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAACCT
48339584 TT
1 TT
48339586 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAACCT
Found at i:48339843 original size:23 final size:24
Alignment explanation
Indices: 48339779--48339895 Score: 152
Period size: 23 Copynumber: 5.0 Consensus size: 24
48339769 GCTTTATCAT
*
48339779 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
48339804 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
48339828 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
48339850 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
48339873 AAAACTGGGGCATTAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
48339896 TCACTTCCTC
Statistics
Matches: 84, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
22 10 0.12
23 44 0.52
24 18 0.21
25 12 0.14
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:48339970 original size:20 final size:20
Alignment explanation
Indices: 48339945--48340011 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
48339935 TTCTGATTAC
*
48339945 ATCATGTGCACATCATACAT
1 ATCATGTGCATATCATACAT
48339965 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
48339985 GTCATGTGTATATCATACAT
1 ATCATGTGCATATCATACAT
*
48340005 ACCATGT
1 ATCATGT
48340012 CTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:48347857 original size:31 final size:31
Alignment explanation
Indices: 48347814--48347877 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
48347804 CCTTTTCATA
*
48347814 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
**
48347845 TTTCATAATTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
48347876 TT
1 TT
48347878 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:48348131 original size:23 final size:24
Alignment explanation
Indices: 48348067--48348183 Score: 170
Period size: 23 Copynumber: 5.0 Consensus size: 24
48348057 ACTTTATCAT
*
48348067 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
48348092 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
48348116 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
48348138 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
48348161 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
48348184 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
22 10 0.12
23 46 0.53
24 18 0.21
25 12 0.14
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:48348257 original size:18 final size:18
Alignment explanation
Indices: 48348230--48348270 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
48348220 CATTTATGAT
48348230 TACATCATGTGCATATCA
1 TACATCATGTGCATATCA
*
48348248 TACATTATGTGCATATCA
1 TACATCATGTGCATATCA
48348266 TACAT
1 TACAT
48348271 AGCATATCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.37
Consensus pattern (18 bp):
TACATCATGTGCATATCA
Found at i:48359508 original size:57 final size:58
Alignment explanation
Indices: 48359418--48359541 Score: 144
Period size: 57 Copynumber: 2.2 Consensus size: 58
48359408 TATTGTATTA
* * ** *
48359418 CAGGATTACTAGTCCAGGCTCAATCCTTTTTGTAACGTATGCTC-AGAAGAACTTA-AT
1 CAGGATTACCAGTCCAGCCTCAATCCTAATTGTAACATATGCTCGAGAAGAA-TTATAT
* * * *
48359475 TAGGATTACCAGTCCAGCCTTAATCCTAATTGTATCATATGCTCGAGAGGAATTATAT
1 CAGGATTACCAGTCCAGCCTCAATCCTAATTGTAACATATGCTCGAGAAGAATTATAT
48359533 CAGGATTAC
1 CAGGATTAC
48359542 TCGTCTGGGC
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
57 39 0.71
58 16 0.29
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (58 bp):
CAGGATTACCAGTCCAGCCTCAATCCTAATTGTAACATATGCTCGAGAAGAATTATAT
Found at i:48364011 original size:260 final size:261
Alignment explanation
Indices: 48363545--48364069 Score: 1016
Period size: 260 Copynumber: 2.0 Consensus size: 261
48363535 TTTCATTGAA
48363545 AAATGGGCTATTACAAGTTTTGTTATTGTCTTGTAGGTACCAAAGTGACTGTCGATACGGACCAC
1 AAATGGGCTATTACAAGTTTTGTTATTGTCTTGTAGGTACCAAAGTGACTGTCGATACGGACCAC
48363610 TCGACAATTAAGTACTTACTTGACAAGAAAGAAGTTAAGTCGAGACTGATCCGATGGGTACTTCT
66 TCGACAATTAAGTACTTACTTGACAAGAAAGAAGTTAAGTCGAGACTGATCCGATGGGTACTTCT
48363675 ACTTCAAGAGTTTGATCTAGAAATCCAAGATCAAAAGGGAGTAGAAAACCAAGTAGTAGACCAAT
131 ACTTCAAGAGTTTGATCTAGAAATCCAAGATCAAAAGGGAGTAGAAAACCAAGTAGTAGACCAAT
*
48363740 TGTCTAGATTGGAGCCGCAAGAAGGGAATTCCTGGAGACATTTCCATATGAATATATACTAAAGG
196 TGTCTAGATTGGAGCCGCAAGAAGGGAATTCCTGGAGACATTTCCAGATGAATATATACTAAAGG
48363805 T
261 T
48363806 AAAT-GGCTATTACAAGTTTTGTTATTGTCTTGTAGGTACCAAAGTGACTGTCGATACGGACCAC
1 AAATGGGCTATTACAAGTTTTGTTATTGTCTTGTAGGTACCAAAGTGACTGTCGATACGGACCAC
*
48363870 TCGACAATTAAGTACTTACTTGACAAGAAAGACGTTAAGTCGAGACTGATCCGATGGGTACTTCT
66 TCGACAATTAAGTACTTACTTGACAAGAAAGAAGTTAAGTCGAGACTGATCCGATGGGTACTTCT
48363935 ACTTCAAGAGTTTGATCTAGAAATCCAAGATCAAAAGGGAGTAGAAAACCAAGTAGTAGACCAAT
131 ACTTCAAGAGTTTGATCTAGAAATCCAAGATCAAAAGGGAGTAGAAAACCAAGTAGTAGACCAAT
*
48364000 TGTCTAGATTGGAGCCGCAAGAAGGGAATTCCTGGAGACATTTCCAGATGAATATATACTGAAGG
196 TGTCTAGATTGGAGCCGCAAGAAGGGAATTCCTGGAGACATTTCCAGATGAATATATACTAAAGG
48364065 T
261 T
48364066 AAAT
1 AAAT
48364070 CATGTTCATA
Statistics
Matches: 261, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
260 257 0.98
261 4 0.02
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (261 bp):
AAATGGGCTATTACAAGTTTTGTTATTGTCTTGTAGGTACCAAAGTGACTGTCGATACGGACCAC
TCGACAATTAAGTACTTACTTGACAAGAAAGAAGTTAAGTCGAGACTGATCCGATGGGTACTTCT
ACTTCAAGAGTTTGATCTAGAAATCCAAGATCAAAAGGGAGTAGAAAACCAAGTAGTAGACCAAT
TGTCTAGATTGGAGCCGCAAGAAGGGAATTCCTGGAGACATTTCCAGATGAATATATACTAAAGG
T
Found at i:48367673 original size:20 final size:20
Alignment explanation
Indices: 48367648--48367695 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
48367638 ATTAGGTTAT
48367648 ATTTTGTTCAAAAATTTGAA
1 ATTTTGTTCAAAAATTTGAA
48367668 ATTTTGTTCAAAAATTTGAA
1 ATTTTGTTCAAAAATTTGAA
48367688 ATTTTGTT
1 ATTTTGTT
48367696 AAGTATGCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.50
Consensus pattern (20 bp):
ATTTTGTTCAAAAATTTGAA
Found at i:48371251 original size:25 final size:25
Alignment explanation
Indices: 48371223--48371270 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
48371213 TTATACCATG
* * *
48371223 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
48371248 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
48371271 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:48371373 original size:20 final size:20
Alignment explanation
Indices: 48371313--48371373 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
48371303 ATAAATATGG
*
48371313 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
48371333 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
48371353 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
48371373 T
1 T
48371374 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:48371450 original size:24 final size:24
Alignment explanation
Indices: 48371423--48371563 Score: 182
Period size: 24 Copynumber: 6.0 Consensus size: 24
48371413 GAGGAAGTGA
48371423 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
48371447 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
48371471 AAAAGGGCTTATG-CCCAGATAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
48371493 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
48371516 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
48371540 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
48371564 ATGATAAAGC
Statistics
Matches: 106, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
21 12 0.11
22 8 0.08
23 8 0.08
24 67 0.63
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:48371508 original size:45 final size:46
Alignment explanation
Indices: 48371423--48371563 Score: 160
Period size: 45 Copynumber: 3.0 Consensus size: 46
48371413 GAGGAAGTGA
*
48371423 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATG-CCCAGATAT-AAAAGGGCTTATGCCCCAGTTATC
*
48371471 AAAAGGGCTTATGCCCAGATAT-AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCAGATATAAAAGGGCTTATGCCCCAGTTATC
* * * *
48371516 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATG-CCCAGATA-TAAAAG-GGCTTATGCC-CCAGTTAT
48371564 ATGATAAAGC
Statistics
Matches: 82, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
45 33 0.40
46 7 0.09
47 9 0.11
48 22 0.27
49 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCAGATATAAAAGGGCTTATGCCCCAGTTATC
Found at i:48371790 original size:31 final size:31
Alignment explanation
Indices: 48371755--48371818 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
48371745 CGTTTACAGT
*
48371755 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
48371786 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
48371817 AA
1 AA
48371819 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:48372873 original size:40 final size:40
Alignment explanation
Indices: 48372813--48373119 Score: 409
Period size: 40 Copynumber: 7.5 Consensus size: 40
48372803 TATTCGGATG
*
48372813 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
48372853 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
*
48372896 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
48372936 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
48372979 ATACCCGGGCTAAGTTCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
48373019 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
48373059 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
48373099 ATATCC-GACTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
48373120 ATACTTGGGT
Statistics
Matches: 239, Mismatches: 22, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
39 12 0.05
40 151 0.63
41 2 0.01
42 1 0.00
43 73 0.31
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:48372957 original size:83 final size:83
Alignment explanation
Indices: 48372818--48373119 Score: 470
Period size: 83 Copynumber: 3.7 Consensus size: 83
48372808 GGATGATATT
48372818 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
48372883 GCGAGTAGTTGCTATACC
66 GCGAGTAGTTGCTATACC
48372901 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
48372966 GCGAGTAGTTGCTATACC
66 GCGAGTAGTTGCTATACC
* * * *
48372984 CGGGCTAAGTTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
*
48373049 GC---TAG-TGACTATATC
66 GCGAGTAGTTG-CTATACC
* * * * *
48373064 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GACTAAATCCCGAAG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAG
48373120 ATACTTGGGT
Statistics
Matches: 206, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
79 15 0.07
80 45 0.22
83 146 0.71
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (83 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTAGTTGCTATACC
Found at i:48373037 original size:123 final size:124
Alignment explanation
Indices: 48372813--48373094 Score: 421
Period size: 123 Copynumber: 2.3 Consensus size: 124
48372803 TATTCGGATG
* *
48372813 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACTATATCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACTATACCCGGGCTAAGTCCCGAAG
* *
48372875 GCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
66 GCATTTGTGC--GTAGTTGCTATACCCGGGCTAAGTCCCGAAGGCATTTATGCAAGTGACT
* *
48372936 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTTCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACTATACCCGGGCTAAGTCCCGAAG
* *
48373001 GCATTTGTGC-TAG-TGACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
66 GCATTTGTGCGTAGTTG-CTATACCCGGGCTAAGTCCCGAAGGCATTTATGCAAGTGACT
*
48373059 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
48373095 TGCTATATCC
Statistics
Matches: 146, Mismatches: 9, Indels: 8
0.90 0.06 0.05
Matches are distributed among these distances:
122 2 0.01
123 107 0.73
124 1 0.01
126 36 0.25
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (124 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACTATACCCGGGCTAAGTCCCGAAG
GCATTTGTGCGTAGTTGCTATACCCGGGCTAAGTCCCGAAGGCATTTATGCAAGTGACT
Found at i:48380657 original size:40 final size:40
Alignment explanation
Indices: 48380602--48380867 Score: 320
Period size: 40 Copynumber: 6.5 Consensus size: 40
48380592 TATTCGGATG
48380602 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
48380642 ATATCCGGGCTAAGTCCCAAAGGCATTTGTACGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* *
48380685 ATA-CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
48380727 ATACCCAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
48380767 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
48380807 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
48380847 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
48380868 ATACTTGGGT
Statistics
Matches: 201, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 13 0.06
40 113 0.56
41 1 0.00
42 39 0.19
43 35 0.17
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:48382731 original size:9 final size:9
Alignment explanation
Indices: 48382719--48382745 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
48382709 CGATGGGAAA
48382719 AATGGGCCC
1 AATGGGCCC
48382728 AATGGGCCC
1 AATGGGCCC
48382737 AATGGGCCC
1 AATGGGCCC
48382746 CGTGGGCCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.33, G:0.33, T:0.11
Consensus pattern (9 bp):
AATGGGCCC
Found at i:48386527 original size:23 final size:23
Alignment explanation
Indices: 48386500--48386563 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
48386490 ACATTTACCG
*
48386500 CTATTAGCAGCTTTGCTGCGTTA
1 CTATTAGCAGCTTTGCTGCGTCA
* *
48386523 CTATTAGTAGCTTTGCTTCGTCA
1 CTATTAGCAGCTTTGCTGCGTCA
* *
48386546 CTATTAGCAACTATGCTG
1 CTATTAGCAGCTTTGCTG
48386564 TGATATTGGT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (23 bp):
CTATTAGCAGCTTTGCTGCGTCA
Found at i:48389861 original size:33 final size:34
Alignment explanation
Indices: 48389804--48389875 Score: 92
Period size: 33 Copynumber: 2.1 Consensus size: 34
48389794 ATAGGCCCAC
* * * * *
48389804 ACTGTTACTGCATAGGGCTTAGGCCCAGACTG-T
1 ACTGTTAATGAATAAGGCTCAGGCCCAGACCGTT
48389837 ACTGTTAATGAATAAGGCTCAGGCCCAGACCGTT
1 ACTGTTAATGAATAAGGCTCAGGCCCAGACCGTT
48389871 ACTGT
1 ACTGT
48389876 ATGCACTGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
33 27 0.82
34 6 0.18
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (34 bp):
ACTGTTAATGAATAAGGCTCAGGCCCAGACCGTT
Found at i:48393192 original size:40 final size:40
Alignment explanation
Indices: 48393126--48393292 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
48393116 AAATTGAATG
* * *
48393126 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
48393165 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
48393205 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
48393245 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
48393285 ATATCCGG
1 ATATCCGG
48393293 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:48401150 original size:40 final size:40
Alignment explanation
Indices: 48401084--48401250 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
48401074 AAATTGAATG
* * *
48401084 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
48401123 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
48401163 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
48401203 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
48401243 ATATCCGG
1 ATATCCGG
48401251 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:48406595 original size:28 final size:28
Alignment explanation
Indices: 48406549--48406617 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
48406539 TTTAAAACCC
*
48406549 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
48406576 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
48406604 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
48406618 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:48408265 original size:20 final size:20
Alignment explanation
Indices: 48408242--48408279 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
48408232 CACATCCAAA
*
48408242 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
48408262 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
48408280 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:48414592 original size:28 final size:28
Alignment explanation
Indices: 48414546--48414614 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
48414536 TTTAAAACCC
*
48414546 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
48414573 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
48414601 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
48414615 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:48416264 original size:20 final size:20
Alignment explanation
Indices: 48416241--48416278 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
48416231 CACATCCAAA
*
48416241 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
48416261 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
48416279 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:48420998 original size:10 final size:10
Alignment explanation
Indices: 48420983--48421011 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
48420973 TGGGCAAAGA
48420983 AAACATGTTG
1 AAACATGTTG
48420993 AAACATGTTG
1 AAACATGTTG
48421003 AAACATGTT
1 AAACATGTT
48421012 TTGTTAATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.31
Consensus pattern (10 bp):
AAACATGTTG
Found at i:48422277 original size:39 final size:39
Alignment explanation
Indices: 48422223--48422346 Score: 176
Period size: 39 Copynumber: 3.2 Consensus size: 39
48422213 TGTGTATGAA
* *
48422223 TGTGCGAATTGTGATATCCGGGCTAAGCCAGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
48422262 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * * *
48422301 GGTGCGAGCTATGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
48422341 TGTGCG
1 TGTGCG
48422347 GGTTACCATA
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
39 60 0.79
40 16 0.21
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:48422346 original size:40 final size:39
Alignment explanation
Indices: 48422223--48422377 Score: 175
Period size: 39 Copynumber: 3.9 Consensus size: 39
48422213 TGTGTATGAA
* * *
48422223 TGTGCGAATTGTGATATCCGGGCTAAGCCAGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
48422262 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
48422301 GGTGCGAGCTATGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
48422341 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
48422378 GTTTGAACGA
Statistics
Matches: 100, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 60 0.60
40 40 0.40
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:48427516 original size:43 final size:43
Alignment explanation
Indices: 48427460--48427574 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 43
48427450 ATATCGTACA
** * *
48427460 ATGCCAACGTCCTAAACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAATATCCTAGACGTGGTCTTACATGTAATCACATAACG
* *
48427503 ATGCCATTATCCTAGACAG-GGTCTTACACGTAATCACATAACG
1 ATGCCAATATCCTAGAC-GTGGTCTTACATGTAATCACATAACG
* *
48427546 ATGCCAATGTCCCAGACGTGGTCTTACAT
1 ATGCCAATATCCTAGACGTGGTCTTACAT
48427575 AAATACACAT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
42 1 0.02
43 58 0.97
44 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGCCAATATCCTAGACGTGGTCTTACATGTAATCACATAACG
Found at i:48431124 original size:40 final size:40
Alignment explanation
Indices: 48431038--48431132 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 40
48431028 CAACTATGTT
*
48431038 TGGCACTTAGTGTGCATTTCGAGATAGCTTCGACTATATA
1 TGGCACTTAGTGTGCAATTCGAGATAGCTTCGACTATATA
** * * *
48431078 AAGCACTTAGTGTGTGAATTGGA-ATAGCTTCGACTATATG
1 TGGCACTTAGTGTG-CAATTCGAGATAGCTTCGACTATATA
*
48431118 TGGCACTAAGTGTGC
1 TGGCACTTAGTGTGC
48431133 GATACTGGGA
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
40 39 0.89
41 5 0.11
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCAATTCGAGATAGCTTCGACTATATA
Found at i:48436323 original size:44 final size:44
Alignment explanation
Indices: 48436184--48436340 Score: 151
Period size: 43 Copynumber: 3.6 Consensus size: 44
48436174 AACATATACA
* *
48436184 ATGCCAATGTCCCAAACGTGGTCTTACATGT-AATCAAATGTCG
1 ATGCCAATGTCCCAAACATGGTCTTACATGTAAATAAAATGTCG
* * * * *
48436227 ATGCCACTGTCCCAGATAGGGTCTTACATG-AAATAAAAT-ACG
1 ATGCCAATGTCCCAAACATGGTCTTACATGTAAATAAAATGTCG
*** * * *
48436269 ATGTTGATGTCCCAGACATAGTCTTACATGTAAA-ATAGATGTCG
1 ATGCCAATGTCCCAAACATGGTCTTACATGTAAATA-AAATGTCG
*
48436313 ATGCCAATGTCTCAAACATGGTCTTACA
1 ATGCCAATGTCCCAAACATGGTCTTACA
48436341 CGAAATCACA
Statistics
Matches: 88, Mismatches: 22, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
42 26 0.30
43 38 0.43
44 24 0.27
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.28
Consensus pattern (44 bp):
ATGCCAATGTCCCAAACATGGTCTTACATGTAAATAAAATGTCG
Found at i:48436340 original size:86 final size:85
Alignment explanation
Indices: 48436190--48436346 Score: 199
Period size: 86 Copynumber: 1.8 Consensus size: 85
48436180 TACAATGCCA
* * * * *
48436190 ATGTCCCAAACGTGGTCTTACATGTAATCAAATGTCGATGCCACTGTCCCAGATAGGGTCTTACA
1 ATGTCCCAAACATAGTCTTACATGTAATCAAATGTCGATGCCAATGTCCCAAACAGGGTCTTACA
*
48436255 TGAAATAAAATACGATGTTG
66 CGAAATAAAATACGATGTTG
* * * *
48436275 ATGTCCCAGACATAGTCTTACATGTAAAAT-AGATGTCGATGCCAATGTCTCAAACATGGTCTTA
1 ATGTCCCAAACATAGTCTTACATGT--AATCAAATGTCGATGCCAATGTCCCAAACAGGGTCTTA
48436339 CACGAAAT
64 CACGAAAT
48436347 CACATAACAG
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
85 22 0.37
86 35 0.58
87 3 0.05
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.28
Consensus pattern (85 bp):
ATGTCCCAAACATAGTCTTACATGTAATCAAATGTCGATGCCAATGTCCCAAACAGGGTCTTACA
CGAAATAAAATACGATGTTG
Done.