Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 165 of 325
Found at i:50991876 original size:31 final size:31
Alignment explanation
Indices: 50991838--50991932 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
50991828 CCGTTACAGT
50991838 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50991869 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
50991900 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50991931 AA
1 AA
50991933 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:50998022 original size:25 final size:25
Alignment explanation
Indices: 50997993--50998040 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
50997983 TTATAATATG
* * *
50997993 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
50998018 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
50998041 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:50998109 original size:20 final size:20
Alignment explanation
Indices: 50998084--50998142 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
50998074 TAAATATGGT
50998084 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
50998104 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
50998124 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
50998143 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:50998124 original size:11 final size:11
Alignment explanation
Indices: 50998088--50998142 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
50998078 TATGGTATGT
50998088 ATGATATGCAC
1 ATGATATGCAC
* *
50998099 ATGAAATG--T
1 ATGATATGCAC
50998108 ATGATATGCAC
1 ATGATATGCAC
*
50998119 ATGATATG--T
1 ATGATATGCAC
50998128 ATGATATGCAC
1 ATGATATGCAC
50998139 ATGA
1 ATGA
50998143 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:50998220 original size:24 final size:24
Alignment explanation
Indices: 50998193--50998311 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
50998183 GAGGAAGTGA
*
50998193 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
50998217 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
50998240 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
50998264 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
50998288 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
50998312 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:50998262 original size:47 final size:48
Alignment explanation
Indices: 50998193--50998311 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
50998183 GAGGAAGTGA
50998193 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
50998240 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
50998288 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
50998312 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:50998537 original size:31 final size:31
Alignment explanation
Indices: 50998502--50998596 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
50998492 CGTTTACAGT
50998502 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50998533 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
50998564 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50998595 AA
1 AA
50998597 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:51002860 original size:25 final size:25
Alignment explanation
Indices: 51002831--51002878 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
51002821 TTATAATATG
* * *
51002831 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
51002856 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
51002879 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:51002947 original size:20 final size:20
Alignment explanation
Indices: 51002922--51002980 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
51002912 TAAATATGGT
51002922 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
51002942 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
51002962 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
51002981 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:51002962 original size:11 final size:11
Alignment explanation
Indices: 51002926--51002980 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
51002916 TATGGTATGT
51002926 ATGATATGCAC
1 ATGATATGCAC
* *
51002937 ATGAAATG--T
1 ATGATATGCAC
51002946 ATGATATGCAC
1 ATGATATGCAC
*
51002957 ATGATATG--T
1 ATGATATGCAC
51002966 ATGATATGCAC
1 ATGATATGCAC
51002977 ATGA
1 ATGA
51002981 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:51003058 original size:24 final size:24
Alignment explanation
Indices: 51003031--51003149 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
51003021 GAGGAAGTGA
*
51003031 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
51003055 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
51003078 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
51003102 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
51003126 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
51003150 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:51003100 original size:47 final size:48
Alignment explanation
Indices: 51003031--51003149 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
51003021 GAGGAAGTGA
51003031 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
51003078 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
51003126 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
51003150 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:51003377 original size:31 final size:31
Alignment explanation
Indices: 51003339--51003433 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
51003329 CCGTTACAGT
51003339 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
51003370 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
51003401 AAAGGCTTCAGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
51003432 AA
1 AA
51003434 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:51006234 original size:73 final size:72
Alignment explanation
Indices: 51006149--51006358 Score: 314
Period size: 72 Copynumber: 2.9 Consensus size: 72
51006139 CTAATTTAGT
* *
51006149 ATAAATAAGTAGAACATAAATTCAATATCCCAAAGACCAAACATAAACAACTATTAATAAAAGTA
1 ATAAATAAGTAGAACATAAATTCAATAT-CCAAAAACCAAACATAAACAACTATTAATAAAACTA
51006214 GATTACAC
65 GATTACAC
* * *
51006222 ATAAATAAGTAGAACATAAATTCAATATTCAAAAACCAAACATAAACAACCATTGATAAAACTAG
1 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTAATAAAACTAG
51006287 ATTACAC
66 ATTACAC
* * * *
51006294 ATAAATAAGTAGAACATAAGTTCAATATCCAAAAACGAAACACAAATAACTA-TAGATAAAACTA
1 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTA-ATAAAACTA
51006358 G
65 G
51006359 TTTAGAATTT
Statistics
Matches: 124, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
71 1 0.01
72 95 0.77
73 28 0.23
ACGTcount: A:0.56, C:0.16, G:0.07, T:0.21
Consensus pattern (72 bp):
ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTAATAAAACTAG
ATTACAC
Found at i:51006806 original size:18 final size:18
Alignment explanation
Indices: 51006785--51006832 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
51006775 TCCATCAATT
*
51006785 TGAACGTCATTTGAAATG
1 TGAACATCATTTGAAATG
51006803 TGAACATCATTTGAAATG
1 TGAACATCATTTGAAATG
51006821 TGAACATCATTT
1 TGAACATCATTT
51006833 CTCACATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.35
Consensus pattern (18 bp):
TGAACATCATTTGAAATG
Found at i:51012947 original size:26 final size:26
Alignment explanation
Indices: 51012918--51012970 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
51012908 TTTACAGTTT
51012918 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
51012944 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
51012970 T
1 T
51012971 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:51015063 original size:2 final size:2
Alignment explanation
Indices: 51015056--51015095 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
51015046 GCAATTGGCT
51015056 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51015096 AACTTCTCTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:51018957 original size:21 final size:21
Alignment explanation
Indices: 51018933--51018995 Score: 63
Period size: 25 Copynumber: 2.8 Consensus size: 21
51018923 GTCTTGAATT
51018933 TGTTAGATATTGAATTTATTA
1 TGTTAGATATTGAATTTATTA
* *
51018954 TGTTTTAAGCTTGTTGAATTTATTA
1 TG--TT-AG-ATATTGAATTTATTA
*
51018979 TATTAGATATTGAATTT
1 TGTTAGATATTGAATTT
51018996 GTTTGGTTGG
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
21 11 0.33
22 2 0.06
23 4 0.12
24 2 0.06
25 14 0.42
ACGTcount: A:0.30, C:0.02, G:0.14, T:0.54
Consensus pattern (21 bp):
TGTTAGATATTGAATTTATTA
Found at i:51020244 original size:29 final size:29
Alignment explanation
Indices: 51020212--51020269 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
51020202 CAATATATGT
* * *
51020212 AAAAATAATTTAAAGTATAAATTTATTAA
1 AAAAACAATTTAAAATACAAATTTATTAA
51020241 AAAAACAATTTAAAATACAAATTTATTAA
1 AAAAACAATTTAAAATACAAATTTATTAA
51020270 TATATGTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.34
Consensus pattern (29 bp):
AAAAACAATTTAAAATACAAATTTATTAA
Found at i:51020379 original size:19 final size:20
Alignment explanation
Indices: 51020355--51020400 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
51020345 CATCCAAACA
51020355 CCAGAAAAGTAAATCA-TTT
1 CCAGAAAAGTAAATCATTTT
51020374 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
51020394 CCAGAAA
1 CCAGAAA
51020401 TCATTTTCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.48, C:0.17, G:0.11, T:0.24
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:51020403 original size:14 final size:14
Alignment explanation
Indices: 51020384--51020421 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
51020374 CCAGAAAAGT
51020384 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
51020398 AAATCATTTTCCGG
1 AAATCATTTTCCAG
*
51020412 AAAACATTTT
1 AAATCATTTT
51020422 ACTCGCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.37
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:51026524 original size:25 final size:25
Alignment explanation
Indices: 51026496--51026544 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
51026486 TTTAAGTGAC
51026496 TGATTGGGGTTTTAATTAATCAATT
1 TGATTGGGGTTTTAATTAATCAATT
*
51026521 TGATTGGGGTTTTAATTGATCAAT
1 TGATTGGGGTTTTAATTAATCAAT
51026545 ATTAGGTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.04, G:0.22, T:0.47
Consensus pattern (25 bp):
TGATTGGGGTTTTAATTAATCAATT
Found at i:51030866 original size:68 final size:70
Alignment explanation
Indices: 51030794--51030991 Score: 285
Period size: 71 Copynumber: 2.8 Consensus size: 70
51030784 ACACCCTGTA
* * * *
51030794 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
51030856 ATAAAT
65 ATAAAT
*
51030862 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
*
51030927 GTAAAT
65 ATAAAT
*
51030933 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
51030992 AGACAAATCG
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.03
70 1 0.01
71 92 0.77
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:51030917 original size:71 final size:71
Alignment explanation
Indices: 51030828--51030991 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
51030818 GAGATGTATC
51030828 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51030893 AGGACA
66 AGGACA
*
51030899 CCATGTAGACAAGAGAGCTACGTGAAAGGTAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51030964 AGGACA
66 AGGACA
51030970 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
51030992 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:51055075 original size:40 final size:40
Alignment explanation
Indices: 51054997--51055180 Score: 241
Period size: 40 Copynumber: 4.5 Consensus size: 40
51054987 ACCCAAGTAT
* *
51054997 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
* **
51055036 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
51055076 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
51055116 CTTCGGGACTTAGCCCGTG-TATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCG-GATATAGCAACTA---GCACAAATGC
51055159 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
51055181 CATCCGAATA
Statistics
Matches: 129, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
39 12 0.09
40 84 0.65
41 2 0.02
42 1 0.01
43 30 0.23
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:51060077 original size:40 final size:40
Alignment explanation
Indices: 51060028--51060195 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
51060018 TCTTCGGAAT
* * *
51060028 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
51060067 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
51060107 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
51060147 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
51060187 TTAGCCCGG
1 TTAGCCCGG
51060196 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:51073984 original size:17 final size:17
Alignment explanation
Indices: 51073940--51073984 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
51073930 GATTTGTACA
*
51073940 AAGATCTTCTATTTTGAT
1 AAGAT-TTCTATTTTCAT
51073958 AAGA-TTCTATTTTCAT
1 AAGATTTCTATTTTCAT
*
51073974 GAGATTTCTAT
1 AAGATTTCTAT
51073985 GAAGTATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 14 0.58
17 6 0.25
18 4 0.17
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.49
Consensus pattern (17 bp):
AAGATTTCTATTTTCAT
Found at i:51078908 original size:13 final size:13
Alignment explanation
Indices: 51078886--51078916 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
51078876 TGACTTATGC
*
51078886 CACACGTCCAAGT
1 CACACATCCAAGT
51078899 CACACATCCAAGT
1 CACACATCCAAGT
51078912 CACAC
1 CACAC
51078917 GCCCGTGTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.42, G:0.10, T:0.13
Consensus pattern (13 bp):
CACACATCCAAGT
Found at i:51081793 original size:40 final size:40
Alignment explanation
Indices: 51081749--51081896 Score: 212
Period size: 40 Copynumber: 3.7 Consensus size: 40
51081739 GAAATTATAA
* * *
51081749 CCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGC-TAC-AT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT--CATTCTAT
51081789 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
51081829 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
*
51081869 CCGGGCTAAGACCCGAAGGCATTTGTGC
1 CCGGGCTAAGACCCGAAGGCATTCGTGC
51081897 AAATCGTGAT
Statistics
Matches: 101, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 95 0.94
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
Found at i:51081910 original size:40 final size:39
Alignment explanation
Indices: 51081705--51081928 Score: 175
Period size: 40 Copynumber: 5.6 Consensus size: 39
51081695 AAATTGAATG
* * * *
51081705 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAGTCAT
* * * *
51081745 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT--CAT
* * *
51081785 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCA-T
* * *
51081825 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCA-T
* * *
51081865 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCAT
* * *
51081904 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
51081929 CTTGGTGCGG
Statistics
Matches: 154, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
37 4 0.03
38 3 0.02
39 3 0.02
40 144 0.94
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCAT
Found at i:51081910 original size:80 final size:77
Alignment explanation
Indices: 51081706--51081937 Score: 209
Period size: 80 Copynumber: 2.9 Consensus size: 77
51081696 AATTGAATGA
* * * *
51081706 TATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT-TATAACCGGGTTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCTATATCCGGGTTAAGACCCGAAGGC-
*
51081770 ATTGTGCTAGTGGCTAC
62 ATTGTGCGAGT-GCTAC
* * * * *
51081787 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC--TATATCCGGGTTAAGACCCGAAGGCAT
*
51081851 TCGTGCGAGT-CATTC
64 T-GTGCGAGTGC-TAC
* * *
51081866 TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGATATCCGGGTTAAGTCCCGTAGGCCT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-T-ATATCCGGGTTAAGACCCGAAGGCAT
51081931 TGGTGCG
64 T-GTGCG
51081938 GGTTACCATA
Statistics
Matches: 123, Mismatches: 21, Indels: 15
0.77 0.13 0.09
Matches are distributed among these distances:
77 4 0.03
78 2 0.02
79 9 0.07
80 108 0.88
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (77 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCTATATCCGGGTTAAGACCCGAAGGCATTG
TGCGAGTGCTAC
Found at i:51081953 original size:80 final size:80
Alignment explanation
Indices: 51081789--51081968 Score: 191
Period size: 80 Copynumber: 2.2 Consensus size: 80
51081779 GTGGCTACAT
* * **
51081789 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGATATCCGGGCTAAGACCCGAAGGCATTCG
* *
51081854 TGCGAGTCATTCTAT
66 TGCGAGTCATCCTAA
* * * * * * *
51081869 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGATATCCGGGTTAAGTCCCGTAGGCCTTGG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGATATCCGGGCTAAGACCCGAAGGCATTCG
* *
51081934 TGCGGGTTA-CCATAA
66 TGCGAGTCATCC-TAA
* *
51081949 CCGGGCTATGTCCCGAAGGC
1 CCGGGCTAAGACCCGAAGGC
51081969 GATTGATCGA
Statistics
Matches: 82, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
79 1 0.01
80 81 0.99
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGATATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATCCTAA
Found at i:51089935 original size:39 final size:36
Alignment explanation
Indices: 51089892--51090032 Score: 169
Period size: 39 Copynumber: 3.8 Consensus size: 36
51089882 GGAAATTATA
* *
51089892 CCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGCTAAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT--CT-AT
*
51089931 CCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCTAT
51089966 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTATTCTAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAG---TCTAT
*
51090005 CCGGGCTAAGACCCGAAGGCATTTGTGC
1 CCGGGCTAAGACCCGAAGGCATTCGTGC
51090033 AAATCGTGAT
Statistics
Matches: 92, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
35 13 0.14
36 20 0.22
37 3 0.03
38 15 0.16
39 41 0.45
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.21
Consensus pattern (36 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCTAT
Found at i:51089984 original size:74 final size:74
Alignment explanation
Indices: 51089888--51090032 Score: 197
Period size: 74 Copynumber: 2.0 Consensus size: 74
51089878 TGCTGGAAAT
* *
51089888 TATACCGGGTTAAGACCCGAAGGCAATT-GTGCTAGT-GGCTAATCCGGGCTAAGA-CCGAAGGC
1 TATACCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTAGGCT-ATCCGGGCTAAGACCCGAAGGC
51089950 ATTCGTGCGAG
64 ATTCGTGCGAG
**
51089961 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTATTCTATCCGGGCTAAGACCCGAAGGCA
1 TATA-CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTAGGCTATCCGGGCTAAGACCCGAAGGCA
*
51090026 TTTGTGC
65 TTCGTGC
51090033 AAATCGTGAT
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
73 7 0.11
74 39 0.62
75 17 0.27
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.22
Consensus pattern (74 bp):
TATACCGGGCTAAGACCCGAAGGCATTCGTGCGAGTAGGCTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCGAG
Found at i:51097774 original size:40 final size:40
Alignment explanation
Indices: 51097689--51097839 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
51097679 AATTGAATGA
* * *
51097689 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
51097729 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
51097770 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
51097809 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
51097840 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:51097853 original size:40 final size:40
Alignment explanation
Indices: 51097725--51097855 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
51097715 TATGCTGGAA
* * *
51097725 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
51097765 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
51097805 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
51097845 ATTATATCCGG
1 ATTATATCCGG
51097856 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:51100849 original size:46 final size:46
Alignment explanation
Indices: 51100797--51100972 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
51100787 TGGTTGAGCA
51100797 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
51100843 TTCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
51100888 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
51100936 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51100973 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 26 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51100953 original size:93 final size:93
Alignment explanation
Indices: 51100794--51100964 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
51100784 GGATGGTTGA
* **
51100794 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
51100859 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
51100887 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51100952 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
51100965 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51103588 original size:46 final size:44
Alignment explanation
Indices: 51103484--51103701 Score: 179
Period size: 46 Copynumber: 4.8 Consensus size: 44
51103474 AGATTTGTGT
* * ** * *
51103484 GCCAGTGTAAGACCATGTATGGGACATGGCATCGGCATTGAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC--CCAGATGAGA
*
51103532 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCC-CAG-ATGAGA
* **
51103578 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCC-C-AGATGAGA
* * * * * *
51103624 GCCAATGTCAGACATGTCTGGGACATGCGTC-GGCTAGGA-GATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCCA-GATGA-GA
*
51103668 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGC
51103702 ACGGTTACAT
Statistics
Matches: 139, Mismatches: 25, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
43 2 0.01
44 29 0.21
45 5 0.04
46 77 0.55
47 15 0.11
48 11 0.08
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCCAGATGAGA
Found at i:51103638 original size:92 final size:90
Alignment explanation
Indices: 51103484--51103698 Score: 234
Period size: 92 Copynumber: 2.3 Consensus size: 90
51103474 AGATTTGTGT
* * * * *
51103484 GCCAGTGTAAGACCATGTATGGGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACGAGAGCCAATGTAAGACATGT
*
51103549 CTGGGACATGCATCAGCCACAGTATGA-GA
64 CTGGGACATGCATC-GCC-CAGGA-GATGA
* * ** *
51103578 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTAGCCAATGTCAGACATGTCT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAGAGCCAATGTAAGACATGTCT
* * * *
51103643 GGGACATGCGTCGGCTAGGAGATGT
66 GGGACATGCATCGCCCAGGAGATGA
*
51103668 GCTAGTGTAAGACATGTCTGGGACATGCATC
1 GCCAGTGTAAGACATGTCTGGGACATGCATC
51103699 AGCACGGTTA
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
89 2 0.02
90 34 0.33
91 2 0.02
92 41 0.39
93 13 0.12
94 12 0.12
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (90 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAGAGCCAATGTAAGACATGTCT
GGGACATGCATCGCCCAGGAGATGA
Found at i:51120661 original size:25 final size:25
Alignment explanation
Indices: 51120632--51120679 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
51120622 TTATAATATG
* * *
51120632 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
51120657 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
51120680 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:51120748 original size:20 final size:20
Alignment explanation
Indices: 51120723--51120781 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
51120713 TAAATATGGT
51120723 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
51120743 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
51120763 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
51120782 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:51120763 original size:11 final size:11
Alignment explanation
Indices: 51120727--51120781 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
51120717 TATGGTATGT
51120727 ATGATATGCAC
1 ATGATATGCAC
* *
51120738 ATGAAATG--T
1 ATGATATGCAC
51120747 ATGATATGCAC
1 ATGATATGCAC
*
51120758 ATGATATG--T
1 ATGATATGCAC
51120767 ATGATATGCAC
1 ATGATATGCAC
51120778 ATGA
1 ATGA
51120782 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:51120859 original size:24 final size:24
Alignment explanation
Indices: 51120832--51120937 Score: 167
Period size: 24 Copynumber: 4.4 Consensus size: 24
51120822 GAGGAAGTGA
51120832 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
51120856 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
51120880 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
51120904 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
51120928 AAAAGAGGCT
1 AAAAG-GGCT
51120938 AGGCCTCTAG
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
24 73 0.95
25 4 0.05
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:51121178 original size:31 final size:31
Alignment explanation
Indices: 51121143--51121237 Score: 138
Period size: 31 Copynumber: 3.1 Consensus size: 31
51121133 CGTTTACAGT
*
51121143 AAAGGCTTCGGCCCAGTAGTAGGAAACT-TGA
1 AAAGGCTTCGGCCCAGTAATAGGAAA-TATGA
*
51121174 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATAGGAAATATGA
* *
51121205 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATAGGAAATATGA
51121236 AA
1 AA
51121238 TATGAAAAGG
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
30 1 0.02
31 59 0.98
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATAGGAAATATGA
Found at i:51131384 original size:40 final size:40
Alignment explanation
Indices: 51131276--51131519 Score: 331
Period size: 40 Copynumber: 6.2 Consensus size: 40
51131266 CGGGATTTAA
* * * * *
51131276 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
51131316 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51131356 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51131396 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51131436 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51131476 CCGG--ATAT--A-TC-CACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51131510 CCGGATATAT
1 CCGGATATAT
51131520 TTCCAATGTT
Statistics
Matches: 185, Mismatches: 15, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
34 27 0.15
35 2 0.01
36 5 0.03
38 4 0.02
39 1 0.01
40 146 0.79
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:51139541 original size:40 final size:40
Alignment explanation
Indices: 51139433--51139682 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
51139423 CGGGATTTAA
* * * * *
51139433 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
51139473 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51139513 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51139553 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51139593 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51139633 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51139673 CCGGATATAT
1 CCGGATATAT
51139683 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:51142686 original size:50 final size:50
Alignment explanation
Indices: 51142592--51142688 Score: 131
Period size: 50 Copynumber: 1.9 Consensus size: 50
51142582 CCGTGTCATC
* * * * **
51142592 GGCCGTGTGCTAGACCGTGTAAAACCTGTACTAAAATTTCCAAGACATAT
1 GGCCATGTGATAGACCGTGTAAAACCTGCACTAAAAATGACAAGACATAT
*
51142642 GGCCATGTGATAGACCGTGTGAAACCTGCACTAAAAATGACAAGACA
1 GGCCATGTGATAGACCGTGTAAAACCTGCACTAAAAATGACAAGACA
51142689 CACGGCTGTG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (50 bp):
GGCCATGTGATAGACCGTGTAAAACCTGCACTAAAAATGACAAGACATAT
Found at i:51146888 original size:47 final size:47
Alignment explanation
Indices: 51146769--51147039 Score: 243
Period size: 46 Copynumber: 5.8 Consensus size: 47
51146759 TAACTTATGT
* * *** *
51146769 GAGCCAGTGTAAGAAC-TGTCTGGGACAT-GCATCGGCCACTTTATGA
1 GAGCCAGTGTAAGACCGTGTCTGGGACATGGCATCGG-CTCGAGACGA
* *
51146815 GAGCCAGTATAAGACCGTGTCTGGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGACCGTGTCTGGGACATGGCATCGGC-TCGAGACGA
* * *
51146863 GAGCTAGTGTAAGA-CATGTCAGGGACAT-GCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACCGTGTCTGGGACATGGCATCGG-CTCGAGACG-A
* * *
51146910 -AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCTACGAGATGA
1 GAGCCAGTGTAAGACCGTGTCTGGGACATGGCATCGGCT-CGAGACGA
* * * * * *
51146955 TAGTCAGTGTAAGACCGTGTCTGGGACAGGGCATCGACTTGAGA-TA
1 GAGCCAGTGTAAGACCGTGTCTGGGACATGGCATCGGCTCGAGACGA
*
51147001 TGAGCCAGTGTAAGACCGTGTCTAGGACATGGCATCGGC
1 -GAGCCAGTGTAAGACCGTGTCTGGGACATGGCATCGGC
51147040 ACCTTACCCA
Statistics
Matches: 186, Mismatches: 29, Indels: 19
0.79 0.12 0.08
Matches are distributed among these distances:
45 3 0.02
46 78 0.42
47 76 0.41
48 29 0.16
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCGTGTCTGGGACATGGCATCGGCTCGAGACGA
Found at i:51147029 original size:140 final size:141
Alignment explanation
Indices: 51146770--51147039 Score: 352
Period size: 140 Copynumber: 1.9 Consensus size: 141
51146760 AACTTATGTG
* ***
51146770 AGCCAGTGTAAGAACTGTCTGGGACATGCATCGGCCACTTTATGAGAGCCAGTATAAGACCGTGT
1 AGCCAGTGTAAGAACTGTCTGGGACATGCATCAGCCACGAGATGAGAGCCAGTATAAGACCGTGT
* * *
51146835 CTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCAGGGACAT-GCATCGGC
66 CTGGGACAGGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCAGGGACATGGCATCGGC
51146899 CTCGAGACGTA
131 CTCGAGACGTA
* * * *
51146910 AGCCAGTGTAAG-ACATGTCTGGGACATGCATCAGCTACGAGATGATAGTCAGTGTAAGACCGTG
1 AGCCAGTGTAAGAAC-TGTCTGGGACATGCATCAGCCACGAGATGAGAGCCAGTATAAGACCGTG
* *
51146974 TCTGGGACAGGGCATCGAC-TTGAGA-TATGAGCCAGTGTAAGACCGTGTCTA-GGACATGGCAT
65 TCTGGGACAGGGCATCGACATTGAGACGA-GAGCCAGTGTAAGA-CATGTC-AGGGACATGGCAT
51147036 CGGC
127 CGGC
51147040 ACCTTACCCA
Statistics
Matches: 112, Mismatches: 13, Indels: 9
0.84 0.10 0.07
Matches are distributed among these distances:
138 1 0.01
139 21 0.19
140 81 0.72
141 9 0.08
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (141 bp):
AGCCAGTGTAAGAACTGTCTGGGACATGCATCAGCCACGAGATGAGAGCCAGTATAAGACCGTGT
CTGGGACAGGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCAGGGACATGGCATCGGC
CTCGAGACGTA
Found at i:51155458 original size:2 final size:2
Alignment explanation
Indices: 51155451--51155479 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
51155441 CTCCAATGCC
51155451 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51155480 GGGCTTACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:51168181 original size:46 final size:47
Alignment explanation
Indices: 51168023--51168297 Score: 185
Period size: 46 Copynumber: 5.9 Consensus size: 47
51168013 TGGGTCACTT
** * *
51168023 ACGT-GAGCCAGTGTAAGACATGTCTAAGACATGCATCGACCACTT--T
1 ACGTAGAGCCAGTGTAAGACATGTCTGGGACATGCATCG-GC-CTTGAG
* * * **
51168069 ATG-AGAGCCAGTATAAGACCATGTCTGGGACATGGCGTCGGTATTGAG
1 ACGTAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGAG
* * *
51168117 AC-AAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAG
1 ACGTAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAG
* *
51168163 ACGTA-AGCCAGTGTAAGACATGTCTAGGAAATGCATCGG-CTATGAG
1 ACGTAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-TGAG
* * ** * *
51168209 ATG-ATAGTTAGTGTAAGACCGTGTCTGGGACATGGCATC-GACTTGAG
1 ACGTAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGAG
**
51168256 A--TATGAGCCAGTGTAAGACTATGTCTGTAACATGCCATCGGC
1 ACGTA-GAGCCAGTGTAAGAC-ATGTCTGGGACATG-CATCGGC
51168298 ATCTTACCCA
Statistics
Matches: 178, Mismatches: 34, Indels: 32
0.73 0.14 0.13
Matches are distributed among these distances:
45 3 0.02
46 79 0.44
47 69 0.39
48 27 0.15
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
ACGTAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAG
Found at i:51168280 original size:140 final size:141
Alignment explanation
Indices: 51168023--51168297 Score: 333
Period size: 140 Copynumber: 2.0 Consensus size: 141
51168013 TGGGTCACTT
* * **
51168023 ACGTGAGCCAGTGTAAGACATGTCTAAGACATGCATCGACCACTTTATGAGAGCCAGTATAAGAC
1 ACGTAAGCCAGTGTAAGACATGTCTAAGAAATGCATCGACCACTAGATGAGAGCCAGTATAAGAC
* * *
51168088 CATGTCTGGGACATGGCGTCGGTATTGAGACAAGAGCTAGTGTAAGACATGTCTGGGACATG-CA
66 CATGTCTGGGACATGGCATCGGTATTGAGACAAGAGCCAGTGTAAGACATGTCTGGAACATGCCA
51168152 TCGGCCTCGAG
131 TCGGCCTCGAG
* * * * ** *
51168163 ACGTAAGCCAGTGTAAGACATGTCTAGGAAATGCATCGGCTA-TGAGATGATAGTTAGTGTAAGA
1 ACGTAAGCCAGTGTAAGACATGTCTAAGAAATGCATCGACCACT-AGATGAGAGCCAGTATAAGA
* * * *
51168227 CCGTGTCTGGGACATGGCATC-G-ACTTGAGATATGAGCCAGTGTAAGACTATGTCTGTAACATG
65 CCATGTCTGGGACATGGCATCGGTA-TTGAGACAAGAGCCAGTGTAAGAC-ATGTCTGGAACATG
51168290 CCATCGGC
128 CCATCGGC
51168298 ATCTTACCCA
Statistics
Matches: 113, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
138 1 0.01
139 23 0.20
140 82 0.73
141 7 0.06
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (141 bp):
ACGTAAGCCAGTGTAAGACATGTCTAAGAAATGCATCGACCACTAGATGAGAGCCAGTATAAGAC
CATGTCTGGGACATGGCATCGGTATTGAGACAAGAGCCAGTGTAAGACATGTCTGGAACATGCCA
TCGGCCTCGAG
Found at i:51170649 original size:40 final size:40
Alignment explanation
Indices: 51170605--51170809 Score: 340
Period size: 40 Copynumber: 5.1 Consensus size: 40
51170595 CAGGATTTAA
* * *
51170605 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
51170645 CCGGATGTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51170685 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51170725 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
51170765 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
51170805 CCGGA
1 CCGGA
51170810 ACTAGTCACT
Statistics
Matches: 157, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 1 0.01
40 156 0.99
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51172314 original size:28 final size:27
Alignment explanation
Indices: 51172251--51172320 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
51172241 ATAGTGAGTC
51172251 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
51172278 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
51172306 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51172321 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:51180130 original size:28 final size:27
Alignment explanation
Indices: 51180067--51180136 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
51180057 ATAGTGAGTC
51180067 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
51180094 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
51180122 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51180137 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:51183102 original size:28 final size:27
Alignment explanation
Indices: 51183039--51183108 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
51183029 ATAGTGAGTC
51183039 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
51183066 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
51183094 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51183109 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:51192965 original size:40 final size:40
Alignment explanation
Indices: 51192886--51193143 Score: 360
Period size: 40 Copynumber: 6.5 Consensus size: 40
51192876 AAGCCAGGTA
* * * * *
51192886 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
51192925 CCTTCGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51192965 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
51193005 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
51193045 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
51193085 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
51193125 CCTTGGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
51193144 TTATCATCCG
Statistics
Matches: 201, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 13 0.06
40 188 0.94
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51199794 original size:30 final size:30
Alignment explanation
Indices: 51199733--51199794 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
51199723 TAAGATTCAT
* * *
51199733 ACTTTGATAAAATGATCGTTTTGCCCCTAG
1 ACTTTCATAAAATGATCATTTTACCCCTAG
*
51199763 ACTTTCATAAAATG-TCCATTTTACCCTTAG
1 ACTTTCATAAAATGAT-CATTTTACCCCTAG
51199793 AC
1 AC
51199795 CCGAAAATTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (30 bp):
ACTTTCATAAAATGATCATTTTACCCCTAG
Found at i:51201200 original size:24 final size:24
Alignment explanation
Indices: 51201172--51201219 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
51201162 TGTTAAAAGT
51201172 ATGAATTGTTAATGCTCATATGTG
1 ATGAATTGTTAATGCTCATATGTG
51201196 ATGAATTGTTAATGCTCATATGTG
1 ATGAATTGTTAATGCTCATATGTG
51201220 TAATAGCCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (24 bp):
ATGAATTGTTAATGCTCATATGTG
Found at i:51202494 original size:40 final size:40
Alignment explanation
Indices: 51202450--51202596 Score: 199
Period size: 40 Copynumber: 3.7 Consensus size: 40
51202440 ATTTGATGTG
* *
51202450 TGTATCCGGGCTTAAAGACCCGCAGACTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
*
51202490 TGTATCTGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
* *
51202530 TGTATCCGGGTTTAAAGACCCGCAGGCT-TCGTGCTAGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTAT-ATGCTGGAAT
* * *
51202570 GGAATCCGGG-TTAAAGACCCGTAGGCT
1 TGTATCCGGGTTTAAAGACCCGCAGGCT
51202597 CGTGTTAGAA
Statistics
Matches: 97, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 17 0.18
40 80 0.82
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
Found at i:51210232 original size:40 final size:40
Alignment explanation
Indices: 51210188--51210374 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
51210178 ATTTGATGTG
* *
51210188 TGTATCCGGGCTTAAAGACCCGCAGGCTATATGTTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
51210228 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
*
51210268 TGTATCTGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
* *
51210308 TGTATCCAGGTTTAAAGACCCGCAGGCT-TCGTGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTAT-ATGCTGGAAT
* * ** *
51210348 GGAATCTAGG-TTAAAGACCCGTAGGCT
1 TGTATCCGGGTTTAAAGACCCGCAGGCT
51210375 CGTGTTAGAA
Statistics
Matches: 136, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 17 0.12
40 119 0.88
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
Found at i:51213942 original size:27 final size:27
Alignment explanation
Indices: 51213901--51213991 Score: 101
Period size: 27 Copynumber: 3.4 Consensus size: 27
51213891 CCCAAAATAA
* * * *
51213901 GTAAAATGACTGTAATGCTCTTGTAGG
1 GTAAAATGACCGTAATACCCTTATAGG
*
51213928 GTAAAATGACCGTAATACCCCTATAGG
1 GTAAAATGACCGTAATACCCTTATAGG
* * * *
51213955 GTAAAATGATCATAATACCCTTCTATG
1 GTAAAATGACCGTAATACCCTTATAGG
51213982 GTAAAATGAC
1 GTAAAATGAC
51213992 GATTATGCCC
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCTTATAGG
Found at i:51214360 original size:28 final size:28
Alignment explanation
Indices: 51214324--51214429 Score: 113
Period size: 28 Copynumber: 3.6 Consensus size: 28
51214314 TACTGATACT
* *
51214324 GTATTGGGCTTAGGCCCACACTGTTATC
1 GTATAGGGCTAAGGCCCACACTGTTATC
*
51214352 GTATAGGGCTAAGGCCCAGACTGTACTGATAC
1 GTATAGGGCTAAGGCCCACACTGT--T-AT-C
* * *
51214384 TGTATTGGGCTTAGGCCCACACTGTTATT
1 -GTATAGGGCTAAGGCCCACACTGTTATC
51214413 GTATAGGGCTAAGGCCC
1 GTATAGGGCTAAGGCCC
51214430 TAGACTGTAC
Statistics
Matches: 64, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
28 36 0.56
30 3 0.05
31 3 0.05
32 1 0.02
33 21 0.33
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (28 bp):
GTATAGGGCTAAGGCCCACACTGTTATC
Found at i:51214409 original size:61 final size:62
Alignment explanation
Indices: 51214314--51214472 Score: 239
Period size: 61 Copynumber: 2.6 Consensus size: 62
51214304 CATTACACTA
51214314 TACTGATACTGTATTGGGCTTAGGCCCACACTGTTATCGTATAGGGCTAAGGCCC-AGACTG
1 TACTGATACTGTATTGGGCTTAGGCCCACACTGTTATCGTATAGGGCTAAGGCCCTAGACTG
*
51214375 TACTGATACTGTATTGGGCTTAGGCCCACACTGTTATTGTATAGGGCTAAGGCCCTAGACTG
1 TACTGATACTGTATTGGGCTTAGGCCCACACTGTTATCGTATAGGGCTAAGGCCCTAGACTG
* * ** * * *
51214437 TACCGATCCTAAATAGGGCTCAGGCCCAGACTGTTA
1 TACTGATACTGTATTGGGCTTAGGCCCACACTGTTA
51214473 CTGCATGCAC
Statistics
Matches: 89, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
61 54 0.61
62 35 0.39
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (62 bp):
TACTGATACTGTATTGGGCTTAGGCCCACACTGTTATCGTATAGGGCTAAGGCCCTAGACTG
Found at i:51219443 original size:39 final size:40
Alignment explanation
Indices: 51219353--51219527 Score: 223
Period size: 39 Copynumber: 4.3 Consensus size: 40
51219343 ACCCAAGTAT
* *
51219353 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
51219392 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
51219432 CTT-GGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
51219471 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
51219514 CTTCGGGACTTAGC
1 CTTCGGGACTTAGC
51219528 GGATATCATC
Statistics
Matches: 120, Mismatches: 9, Indels: 10
0.86 0.06 0.07
Matches are distributed among these distances:
39 48 0.40
40 47 0.39
41 1 0.01
43 24 0.20
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:51227087 original size:40 final size:39
Alignment explanation
Indices: 51227009--51227230 Score: 268
Period size: 40 Copynumber: 5.5 Consensus size: 39
51226999 ACCCAAGTAT
* *
51227009 CTTCGGGATTTAGCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCGGATATAGTC-ACTAGCACAAATGC
* **
51227048 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAATGC
51227088 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAATGC
* *
51227128 CTTTGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAG-CCGGATATAGTC-ACTA---GCACAAATGC
* * *
51227171 CATCGGGACTTAGCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCGGATATAGTCACTAGCACAAATGC
51227210 CTTCGGGACTTAGCCGGATAT
1 CTTCGGGACTTAGCCGGATAT
51227231 CATCCGAATA
Statistics
Matches: 160, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
39 42 0.26
40 84 0.52
41 1 0.01
42 12 0.08
43 21 0.13
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (39 bp):
CTTCGGGACTTAGCCGGATATAGTCACTAGCACAAATGC
Found at i:51230530 original size:40 final size:40
Alignment explanation
Indices: 51230475--51230695 Score: 347
Period size: 40 Copynumber: 5.5 Consensus size: 40
51230465 CATTTGAATG
*
51230475 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGCTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
51230515 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
51230555 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
51230595 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
51230635 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
51230675 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
51230696 AAACTTGGGT
Statistics
Matches: 169, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.07
40 156 0.92
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:51238583 original size:40 final size:40
Alignment explanation
Indices: 51238528--51238747 Score: 329
Period size: 40 Copynumber: 5.5 Consensus size: 40
51238518 CATTTGAATG
*
51238528 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
51238568 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
51238608 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
51238648 ATATCCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
51238687 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
51238727 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
51238748 AAACTTGGGT
Statistics
Matches: 165, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 48 0.29
40 116 0.70
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:51238728 original size:79 final size:80
Alignment explanation
Indices: 51238528--51238747 Score: 329
Period size: 79 Copynumber: 2.8 Consensus size: 80
51238518 CATTTGAATG
* *
51238528 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCTGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
*
51238593 TTTGTGCGAGTTGTT
66 TTTGTGCGAGTTGCT
51238608 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGA-CCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
51238672 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * * * * *
51238687 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGA-CCCGAAG
51238748 AAACTTGGGT
Statistics
Matches: 129, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
77 1 0.01
78 6 0.05
79 69 0.53
80 53 0.41
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:51246121 original size:40 final size:40
Alignment explanation
Indices: 51246021--51246241 Score: 290
Period size: 40 Copynumber: 5.5 Consensus size: 40
51246011 ACCCAAGTAT
* *
51246021 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
51246060 CTTC-GGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
51246099 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
51246139 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA-GC-ACAAATGC
* *
51246181 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
51246221 CTTCGGGACTTAG-CCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
51246242 CATCCGAATA
Statistics
Matches: 161, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
38 6 0.04
39 38 0.24
40 81 0.50
41 2 0.01
42 34 0.21
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:51246201 original size:82 final size:80
Alignment explanation
Indices: 51246021--51246241 Score: 290
Period size: 82 Copynumber: 2.8 Consensus size: 80
51246011 ACCCAAGTAT
* * *
51246021 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTC-GGTCTTAGCCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
**
51246083 TCACTAGCATGAATGC
65 TCACTAGCACAAATGC
*
51246099 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
51246163 CAACTACTCGACAAATGC
66 C-ACTA-GC-ACAAATGC
* *
51246181 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAG-CCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
51246242 CATCCGAATA
Statistics
Matches: 127, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
78 12 0.09
79 28 0.22
80 22 0.17
81 8 0.06
82 57 0.45
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:51246234 original size:122 final size:117
Alignment explanation
Indices: 51246021--51246241 Score: 325
Period size: 122 Copynumber: 1.8 Consensus size: 117
51246011 ACCCAAGTAT
* * *
51246021 CTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGTCTTAGCCCGGATATAGTCA
1 CTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGACTTAGCCCGGATATAGTAA
**
51246086 CTAGCATGAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
66 CTAGCACAAATGCCTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAATGC
* *
51246139 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CTTCGGGACTTAG-CCGGATATAGCAACT-CGC-ACAAATGCCTTC-GGACTTAGCCCGGATATA
*
51246204 GTAACTTGCACAAATGCCTTCGGGACTTAGCCGGATAT
62 GTAACTAGCACAAATGCCTTCGGGACTTAGCCGGATAT
51246242 CATCCGAATA
Statistics
Matches: 91, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
118 12 0.13
119 14 0.15
120 2 0.02
121 20 0.22
122 43 0.47
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (117 bp):
CTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGACTTAGCCCGGATATAGTAA
CTAGCACAAATGCCTTCGGGACTTAGCCGGATATAGTCACTAGCACAAATGC
Found at i:51252297 original size:27 final size:27
Alignment explanation
Indices: 51252267--51252407 Score: 201
Period size: 27 Copynumber: 5.2 Consensus size: 27
51252257 CCCCAAAATA
*
51252267 GGTAAAATGACCATAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
51252294 GGTAAAATGATCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
51252321 GGTAAAATGACTGTAATGCTCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
51252348 GGTAAAATGACCGTAATGCTCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
51252375 GGTAAAATGACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATGCCCCTGTAG
51252402 GGTAAA
1 GGTAAA
51252408 GTGAAGATTA
Statistics
Matches: 103, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:51253763 original size:29 final size:29
Alignment explanation
Indices: 51253689--51253807 Score: 102
Period size: 29 Copynumber: 4.2 Consensus size: 29
51253679 TATATACATG
* *
51253689 CATATGGCCCACTAGGCCC-AATCTTATT
1 CATATGGCCCATTAGGCCCAAATCATATT
* **
51253717 CAAATGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCAT-TAGGCCCAAATCATATT
* * *
51253746 CTTATGGCCCATTAGGCCTAATTCA-ATTT
1 CATATGGCCCATTAGGCCCAAATCATA-TT
* *
51253775 CATATGGCTCATTAGACCCAAATCATATT
1 CATATGGCCCATTAGGCCCAAATCATATT
51253804 -ATAT
1 CATAT
51253808 TCATGCTCAC
Statistics
Matches: 72, Mismatches: 14, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
28 21 0.29
29 50 0.69
30 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCATATT
Found at i:51255599 original size:61 final size:61
Alignment explanation
Indices: 51255499--51255623 Score: 196
Period size: 61 Copynumber: 2.0 Consensus size: 61
51255489 ATTGCATTAC
* * *
51255499 ACTGTACTGATACTGTATTGGGCTTAGGCCCATATTGTTATTGTATAGGGCTAAGGCCCAG
1 ACTGTACTGATACTGTATTGGGCTTAGGCCCACACTGTTACTGTATAGGGCTAAGGCCCAG
* * *
51255560 ACTGTACTGATACTGTATTGGGTTTAGGCCTACACTGTTACTGTATAGGGCTAAGGTCCAG
1 ACTGTACTGATACTGTATTGGGCTTAGGCCCACACTGTTACTGTATAGGGCTAAGGCCCAG
51255621 ACT
1 ACT
51255624 ATCCCGATCC
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (61 bp):
ACTGTACTGATACTGTATTGGGCTTAGGCCCACACTGTTACTGTATAGGGCTAAGGCCCAG
Found at i:51255658 original size:61 final size:61
Alignment explanation
Indices: 51255507--51255663 Score: 143
Period size: 61 Copynumber: 2.6 Consensus size: 61
51255497 ACACTGTACT
* * * * * * * *
51255507 GATACTGTATTGGGCTTAGGCCCATATTGTTATTGTATAGGGCTAAGGCCCAGACTGTACT
1 GATACTGAATAGGGCTCAGGCCCACACTGTTACTGTATAGGGCTAAGGCCCAGACTATACC
* * * * * * *
51255568 GATACTGTATTGGGTTTAGGCCTACACTGTTACTGTATAGGGCTAAGGTCCAGACTATCCC
1 GATACTGAATAGGGCTCAGGCCCACACTGTTACTGTATAGGGCTAAGGCCCAGACTATACC
* * * *
51255629 GATCCTGAATAGGGCTCGGGCCCAGACTGTAACTG
1 GATACTGAATAGGGCTCAGGCCCACACTGTTACTG
51255664 CATGCACTAT
Statistics
Matches: 78, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
61 78 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (61 bp):
GATACTGAATAGGGCTCAGGCCCACACTGTTACTGTATAGGGCTAAGGCCCAGACTATACC
Found at i:51259434 original size:39 final size:41
Alignment explanation
Indices: 51259333--51259516 Score: 213
Period size: 39 Copynumber: 4.6 Consensus size: 41
51259323 TCGAATGATG
* * *
51259333 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGA-TTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
*
51259373 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
* * *
51259413 TCCGGGCTAAG-CCCGAAGGCATTGGTGCTAGTCACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
51259452 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
51259491 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51259517 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
38 1 0.01
39 66 0.53
40 46 0.37
41 11 0.09
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:51259510 original size:79 final size:81
Alignment explanation
Indices: 51259334--51259514 Score: 246
Period size: 79 Copynumber: 2.3 Consensus size: 81
51259324 CGAATGATGT
* * * * *
51259334 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGATTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGACCCGAAGGCATTT
*
51259398 GTGCGAGTTACTAATT
66 GTGCGAGTTACTAATA
*
51259414 CCGGGCTAAG-CCCGAAGGCATTGGTGCT-AGTCACTAAATCCGGGCTAAG-CCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGACCCGAAGGCATTT
51259476 GTGCGAGTTACT-ATAA
66 GTGCGAGTTACTAAT-A
*
51259492 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
51259515 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
77 2 0.02
78 33 0.37
79 38 0.42
80 17 0.19
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGACCCGAAGGCATTT
GTGCGAGTTACTAATA
Found at i:51262453 original size:38 final size:38
Alignment explanation
Indices: 51262408--51262506 Score: 99
Period size: 38 Copynumber: 2.6 Consensus size: 38
51262398 AAAGTCCTTG
** *
51262408 TTATAATTATTGTAATTATAATTTAGGATTGAATATTA
1 TTATAATTATTGTAATTATAATTTAGGATCAAAAATTA
* * * ***
51262446 TTATAATTACTATAATTGTAATTTTTTATCAAAAATTA
1 TTATAATTATTGTAATTATAATTTAGGATCAAAAATTA
*
51262484 TTATAAATTATGGTAATTATAAT
1 TTAT-AATTATTGTAATTATAAT
51262507 ATTTGGTTAA
Statistics
Matches: 47, Mismatches: 13, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
38 33 0.70
39 14 0.30
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.49
Consensus pattern (38 bp):
TTATAATTATTGTAATTATAATTTAGGATCAAAAATTA
Found at i:51262504 original size:16 final size:17
Alignment explanation
Indices: 51262483--51262520 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
51262473 ATCAAAAATT
51262483 ATTATAA-ATTATGG-TA
1 ATTATAATATT-TGGTTA
51262499 ATTATAATATTTGGTTA
1 ATTATAATATTTGGTTA
51262516 ATTAT
1 ATTAT
51262521 TATGATTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (17 bp):
ATTATAATATTTGGTTA
Found at i:51266830 original size:40 final size:40
Alignment explanation
Indices: 51266704--51266869 Score: 194
Period size: 40 Copynumber: 4.2 Consensus size: 40
51266694 CGGAATATAA
* *
51266704 CCGGATATAATCAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
* * *
51266743 CCGGATAGAATAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCAC-AATTGCCTTCGGGTCTTAGC
* *
51266783 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
** * * *
51266823 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
51266862 CCGGATAT
1 CCGGATAT
51266870 CATTCAATTT
Statistics
Matches: 109, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
39 27 0.25
40 80 0.73
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:51267714 original size:17 final size:19
Alignment explanation
Indices: 51267691--51267736 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
51267681 AAGAAGCATG
51267691 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
51267709 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
51267727 AATCATGCTC
1 AATCATGCTC
51267737 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:51274750 original size:40 final size:41
Alignment explanation
Indices: 51274705--51274871 Score: 182
Period size: 40 Copynumber: 4.2 Consensus size: 41
51274695 CGGAATATAA
*
51274705 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
51274745 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
51274785 CCGGATATAA-CCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
51274825 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
51274864 CCGGATAT
1 CCGGATAT
51274872 CATTCAATTT
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
39 16 0.15
40 93 0.85
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:51275718 original size:17 final size:19
Alignment explanation
Indices: 51275695--51275740 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
51275685 AAGAAGCATG
51275695 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
51275713 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
51275731 AATCATGCTC
1 AATCATGCTC
51275741 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:51276840 original size:20 final size:20
Alignment explanation
Indices: 51276797--51276838 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
51276787 TAAAGAAAGT
51276797 AAATGCAATGGAAATTAATG
1 AAATGCAATGGAAATTAATG
51276817 AAATGCAAAT-GAAATTAA-G
1 AAATGC-AATGGAAATTAATG
51276836 AAA
1 AAA
51276839 ATTTGAAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 14 0.67
21 3 0.14
ACGTcount: A:0.57, C:0.05, G:0.17, T:0.21
Consensus pattern (20 bp):
AAATGCAATGGAAATTAATG
Found at i:51277308 original size:15 final size:16
Alignment explanation
Indices: 51277288--51277317 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51277278 TAGTGCCTTA
51277288 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
51277303 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
51277318 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:51277597 original size:2 final size:2
Alignment explanation
Indices: 51277590--51277627 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
51277580 TGACATGTGC
51277590 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51277628 GTGGCTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51282201 original size:16 final size:16
Alignment explanation
Indices: 51282162--51282203 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
51282152 AAAAGTAGTT
*
51282162 GGTCAGAAATTTGATC
1 GGTCATAAATTTGATC
*
51282178 GAAT-ATAAATTTGATC
1 G-GTCATAAATTTGATC
51282194 GGTCATAAAT
1 GGTCATAAAT
51282204 GGTCTAGCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
15 1 0.05
16 19 0.90
17 1 0.05
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (16 bp):
GGTCATAAATTTGATC
Found at i:51285481 original size:28 final size:28
Alignment explanation
Indices: 51285378--51285483 Score: 106
Period size: 28 Copynumber: 3.8 Consensus size: 28
51285368 CAGCTAAATT
** * *
51285378 TGGCACTTAGTGTGCGGGACA-TCAAATA
1 TGGCACTTAGTGTGCGAAATATTGAAA-A
* *
51285406 TGGCACTTAGTGTGTGAAACATTGAAAA
1 TGGCACTTAGTGTGCGAAATATTGAAAA
* *
51285434 TGGCACTTTGTGTGCGAAATATTGAGAA
1 TGGCACTTAGTGTGCGAAATATTGAAAA
* *
51285462 TGGCACTCAGTGTGCAAAATAT
1 TGGCACTTAGTGTGCGAAATAT
51285484 CGAATGATTC
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
28 62 0.94
29 4 0.06
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.28
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAAATATTGAAAA
Found at i:51287709 original size:26 final size:26
Alignment explanation
Indices: 51287646--51287778 Score: 115
Period size: 26 Copynumber: 5.1 Consensus size: 26
51287636 CTCATGGTCT
* **
51287646 TCCGGCCAACTCAAACTCAAGGTTCC
1 TCCGACCAACTCAAACTCAAGGGACC
** *
51287672 TTGGACCCACTCAAACTCAAGGGACC
1 TCCGACCAACTCAAACTCAAGGGACC
* *
51287698 TCCGACTAACTCAAACTCAAGAG-CTC
1 TCCGACCAACTCAAACTCAAGGGAC-C
* **
51287724 TCTGACCAGTTCAAACTCAAGGGACC
1 TCCGACCAACTCAAACTCAAGGGACC
* * *
51287750 TCCAACCCATCTCAAACTCAAGGGTCC
1 TCCGA-CCAACTCAAACTCAAGGGACC
51287777 TC
1 TC
51287779 GGAACCACTC
Statistics
Matches: 83, Mismatches: 21, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
25 1 0.01
26 61 0.73
27 21 0.25
ACGTcount: A:0.30, C:0.36, G:0.15, T:0.19
Consensus pattern (26 bp):
TCCGACCAACTCAAACTCAAGGGACC
Found at i:51289976 original size:40 final size:40
Alignment explanation
Indices: 51289921--51290128 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
51289911 TGAATGATAC
* * *
51289921 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
51289961 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
51290001 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
51290041 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
51290081 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
51290121 CC-GGCTAA
1 CCGGGCTAA
51290129 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 5 0.03
40 147 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:51295704 original size:87 final size:87
Alignment explanation
Indices: 51295558--51295734 Score: 354
Period size: 87 Copynumber: 2.0 Consensus size: 87
51295548 TCGATCACAC
51295558 TATCCAAAGGACTTTCATCTGGGTAAATGGCTTGTAAAACTTAAGTATGGCATGTATAGCAATAT
1 TATCCAAAGGACTTTCATCTGGGTAAATGGCTTGTAAAACTTAAGTATGGCATGTATAGCAATAT
51295623 ATTTATTTTGTGTAAATAATTT
66 ATTTATTTTGTGTAAATAATTT
51295645 TATCCAAAGGACTTTCATCTGGGTAAATGGCTTGTAAAACTTAAGTATGGCATGTATAGCAATAT
1 TATCCAAAGGACTTTCATCTGGGTAAATGGCTTGTAAAACTTAAGTATGGCATGTATAGCAATAT
51295710 ATTTATTTTGTGTAAATAATTT
66 ATTTATTTTGTGTAAATAATTT
51295732 TAT
1 TAT
51295735 GATATGGCCA
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 90 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (87 bp):
TATCCAAAGGACTTTCATCTGGGTAAATGGCTTGTAAAACTTAAGTATGGCATGTATAGCAATAT
ATTTATTTTGTGTAAATAATTT
Found at i:51298204 original size:14 final size:15
Alignment explanation
Indices: 51298185--51298237 Score: 74
Period size: 15 Copynumber: 3.6 Consensus size: 15
51298175 ATCTTGGGTG
51298185 TCTTTATTCTGGA-T
1 TCTTTATTCTGGATT
51298199 TCTTTATTCTGGATT
1 TCTTTATTCTGGATT
*
51298214 TCTCTA-TCTTGGATT
1 TCTTTATTC-TGGATT
51298229 TCTTTATTC
1 TCTTTATTC
51298238 GGTTTCCTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
14 15 0.44
15 17 0.50
16 2 0.06
ACGTcount: A:0.13, C:0.17, G:0.11, T:0.58
Consensus pattern (15 bp):
TCTTTATTCTGGATT
Found at i:51300571 original size:46 final size:46
Alignment explanation
Indices: 51300515--51300687 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
51300505 TGGTTGAGCA
*
51300515 TCCGAACTCGTTGAGTTGAGTCCGAGTACACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51300561 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
51300606 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51300654 -CTCGAGCTCGTTGAGTTGTGTCGGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51300688 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 57 0.53
47 29 0.27
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51300671 original size:93 final size:93
Alignment explanation
Indices: 51300512--51300682 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
51300502 GGATGGTTGA
51300512 GCATCCGAACTCGTTGAGTTGAGTCCGAGTACACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTACACTTATGGATGCGAATGTCCGAACTCGTTGAGT
51300577 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
51300605 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTACACTTATGGATGCGAATGTC-CGAACTCGTTGAG
* *
51300669 TTGTGTCGGAGTTC
65 TTGAGTCCGAGTTC
51300683 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTACACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51312737 original size:55 final size:54
Alignment explanation
Indices: 51312629--51312836 Score: 226
Period size: 55 Copynumber: 3.8 Consensus size: 54
51312619 ATTAGGGTTT
* * *
51312629 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTATGGTT-TCTAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTA-AGTTCTATAAGGA
* * *
51312684 AAGGATACCATGTAAGACCATGTCAAGACATGTCATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGG-A
* * * *
51312740 AAGG-T-CTCATGTAAGACTATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATAC-CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGA
* * *
51312792 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
51312837 TCAAAAGGAT
Statistics
Matches: 128, Mismatches: 19, Indels: 14
0.80 0.12 0.09
Matches are distributed among these distances:
52 4 0.03
53 41 0.32
54 9 0.07
55 69 0.54
56 5 0.04
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.24
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGA
Found at i:51312835 original size:108 final size:109
Alignment explanation
Indices: 51312637--51312836 Score: 298
Period size: 108 Copynumber: 1.8 Consensus size: 109
51312627 TTAAGGATAC
51312637 CATGTAAGACCATGCCAAGGCATGGCAATTGGTATGGTTTCTAAGGAAAGGATACCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGTA-GGTTTCTAAGGAAAGGATACCATGTAAGAC
* *
51312702 CATGTCAAGACATGTCATTGATAAGTTACTATAAGGCAAAGGTCT
65 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
* *
51312747 CATGTAAGACTATGCCAAGGCATGGC-ATTGGT-GAG-TTCATAAGGCAAGGATACCATGTAAGA
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAG-GTTTC-TAAGGAAAGGATACCATGTAAGA
* *
51312809 CCATGTCGAGACATGGCAATGGTAAGTT
64 CCATGTCAAGACATGGCAATGATAAGTT
51312837 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
107 4 0.05
108 47 0.57
109 6 0.07
110 25 0.30
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.24
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCAATTGGTAGGTTTCTAAGGAAAGGATACCATGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
Found at i:51316829 original size:40 final size:40
Alignment explanation
Indices: 51316734--51316951 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
51316724 TGGATGATAA
* *
51316734 CCGGGCTAAGTCCCGAAGGCATTTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCA-TTTGCGCGAGTTACTA-TAT
* * * *
51316775 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
*
51316815 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
*
51316855 CCGGGCTAAGTCCCGAAGGCATTGGCGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
* *
51316895 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTA-CTATAT
* *
51316934 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
51316952 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
38 15 0.09
39 15 0.09
40 108 0.68
41 21 0.13
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
Found at i:51329989 original size:49 final size:48
Alignment explanation
Indices: 51329903--51330268 Score: 503
Period size: 47 Copynumber: 7.7 Consensus size: 48
51329893 GATTTTACGC
51329903 GATGAATGTGAA-TGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
*
51329950 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
*
51329999 GATGAATGTGAAG-GTGTATATATGTGATAAGG-CTGAATGGCCAATGT
1 GATGAATGTGAAGTGTGTATATATGTGATAAGGCCT-AATGGCCGATGT
51330046 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* *
51330095 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCAGATGT
1 GATGAATGTG-AAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* *
51330144 GATGAATGTGAAG-GTGTATATATGTGATAAGG-CTGAATAGCCAATGT
1 GATGAATGTGAAGTGTGTATATATGTGATAAGGCCT-AATGGCCGATGT
* * * * * *
51330191 GATGAATGTGAAG-GTGTATATATGTGACAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * *
51330238 GATGGATGTGAA-AGTGTATAAATGTGATAAG
1 GATGAATGTGAAGTGTGTATATATGTGATAAG
51330269 TCCCGAAGGG
Statistics
Matches: 290, Mismatches: 20, Indels: 18
0.88 0.06 0.05
Matches are distributed among these distances:
46 4 0.01
47 141 0.49
48 12 0.04
49 131 0.45
50 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.30
Consensus pattern (48 bp):
GATGAATGTGAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:51330016 original size:96 final size:96
Alignment explanation
Indices: 51329903--51330268 Score: 521
Period size: 96 Copynumber: 3.8 Consensus size: 96
51329893 GATTTTACGC
* *
51329903 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
51329968 TATATATGTGATAAGGCCTAATGGCCGATGT
66 TATATATGTGATAAGGCCTAATGGCCGATGT
51329999 GATGAATGTGAAGGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTGT
*
51330063 GTATATATGTGATAAGGCCTAATGGCCGATGT
65 ATATATATGTGATAAGGCCTAATGGCCGATGT
*
51330095 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGTGATGAATGTG-AAG-
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCTAATGGCCA-ATGTGATGAATGTGAAAGT
* * *
51330157 GTGTATATATGTGATAAGG-CTGAATAGCCAATGT
63 GTATATATATGTGATAAGGCCT-AATGGCCGATGT
* * * * * *
51330191 GATGAATGTGAAGGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
51330256 TA-A-ATGTGATAAG
66 TATATATGTGATAAG
51330269 TCCCGAAGGG
Statistics
Matches: 247, Mismatches: 14, Indels: 20
0.88 0.05 0.07
Matches are distributed among these distances:
94 44 0.18
95 13 0.05
96 143 0.58
97 8 0.03
98 37 0.15
99 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.30
Consensus pattern (96 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
TATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:51330086 original size:145 final size:144
Alignment explanation
Indices: 51329903--51330268 Score: 614
Period size: 145 Copynumber: 2.6 Consensus size: 144
51329893 GATTTTACGC
51329903 GATGAATGTGAA-TGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 GATGAATGTGAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
51329967 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGATAAGGC
66 ATATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAGGTGTATATATGTGATAAGGC
*
51330032 TGAATGGCCAATGT
131 TGAATAGCCAATGT
51330046 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
51330111 TATATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAGGTGTATATATGTGATAAGG
65 TATATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAGGTGTATATATGTGATAAGG
51330176 CTGAATAGCCAATGT
130 CTGAATAGCCAATGT
* * * * * * *
51330191 GATGAATGTGAAG-GTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGT
1 GATGAATGTGAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
51330255 ATA-A-ATGTGATAAG
66 ATATATATGTGATAAG
51330269 TCCCGAAGGG
Statistics
Matches: 212, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
141 10 0.05
142 1 0.00
143 57 0.27
144 5 0.02
145 139 0.66
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.30
Consensus pattern (144 bp):
GATGAATGTGAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
ATATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAGGTGTATATATGTGATAAGGC
TGAATAGCCAATGT
Found at i:51340880 original size:54 final size:54
Alignment explanation
Indices: 51340814--51340963 Score: 228
Period size: 54 Copynumber: 2.8 Consensus size: 54
51340804 ACCCTACAAG
* * *
51340814 GGTATTTCGGTAATTTTATAAACAAAAGGTATTTTAGTAATTTTACAAACCAGA
1 GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGA
* * *
51340868 GGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGA
* *
51340922 GGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATT
51340964 CTGTAAATTG
Statistics
Matches: 87, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 87 1.00
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGA
Found at i:51340929 original size:81 final size:81
Alignment explanation
Indices: 51340810--51340970 Score: 216
Period size: 81 Copynumber: 2.0 Consensus size: 81
51340800 TTCTACCCTA
* *
51340810 CAAGGGTATTTCGGTAATTTTATAAACAAAAGGTATTTTAGTAATTTTACAAACC-AGAGGTATT
1 CAAGGGTATTTCAGTAATTTTACAAACAAAAGGTATTTTAGTAATTTTACAAACCAAG-GGTATT
*
51340874 TTGGTAATTTTGTAAAC
65 TTGGTAATTCTGTAAAC
* * ** * * *
51340891 CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAACAAAAGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
51340956 TGGTAATTCTGTAAA
66 TGGTAATTCTGTAAA
51340971 TTGAAGGTAA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
81 67 0.97
82 2 0.03
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.39
Consensus pattern (81 bp):
CAAGGGTATTTCAGTAATTTTACAAACAAAAGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
TGGTAATTCTGTAAAC
Found at i:51340970 original size:27 final size:27
Alignment explanation
Indices: 51340810--51340963 Score: 193
Period size: 27 Copynumber: 5.7 Consensus size: 27
51340800 TTCTACCCTA
*
51340810 CAAGGGTATTTCGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
51340837 AAAAGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
51340864 C-AGAGGTATTTTGGTAATTTTGTAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* *
51340891 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
51340918 TAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
51340945 CAAGGGTATTTTGGTAATT
1 CAAGGGTATTTTGGTAATT
51340964 CTGTAAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 1 0.01
27 101 0.97
28 2 0.02
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:51341220 original size:27 final size:27
Alignment explanation
Indices: 51340958--51341206 Score: 299
Period size: 27 Copynumber: 9.2 Consensus size: 27
51340948 GGGTATTTTG
* * **
51340958 GTAATTCTGTAAATTGAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATA
**
51340985 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAATA
*
51341012 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* *
51341039 GTAATTCTGTAAA-CTGAGGGGAAAACA
1 GTAATTCTGTAAATC-GAGGGTAAAATA
*
51341066 GTAATTCTGTAAATCGAGGATAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATA
**
51341093 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAATA
51341120 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* *
51341147 GTGATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTGTAAATC-GAGGGTAAAATA
*
51341174 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATA
51341201 GTAATT
1 GTAATT
51341207 TTACAAGTCG
Statistics
Matches: 195, Mismatches: 19, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
26 3 0.02
27 188 0.96
28 4 0.02
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATA
Found at i:51341220 original size:54 final size:54
Alignment explanation
Indices: 51340957--51341206 Score: 401
Period size: 54 Copynumber: 4.6 Consensus size: 54
51340947 AGGGTATTTT
* * **
51340957 GGTAATTCTGTAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
51341011 GGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGGAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
51341065 AGTAATTCTGTAAATCGAGGATAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
51341119 GGTAATTCTGTAAATCGAGGGTAAAATAGTGATTCTGTAAACTGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
*
51341173 GGTAATTCTGTAAATCGAGGGTAAAATGGTAATT
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATT
51341207 TTACAAGTCG
Statistics
Matches: 180, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 180 1.00
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.28
Consensus pattern (54 bp):
GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
Found at i:51341220 original size:81 final size:81
Alignment explanation
Indices: 51340956--51341206 Score: 337
Period size: 81 Copynumber: 3.1 Consensus size: 81
51340946 AAGGGTATTT
* * * * * *
51340956 TGGTAATTCTGTAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTA
1 TGGTAATTCTGTAAATCGAGGGGAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
51341021 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * *
51341037 TAGTAATTCTGTAAA-CTGAGGGGAAAACAGTAATTCTGTAAA-TCGAGGATAAAATAGTAATTC
1 TGGTAATTCTGTAAATC-GAGGGGAAAACAGTAATTCTGTAAACT-GAGGGTAAAATGGTAATTC
51341100 TGTAAA-CTGAGGGTAAAA
64 TGTAAATC-GAGGGTAAAA
* * * *
51341118 CGGTAATTCTGTAAATCGAGGGTAAAATAGTGATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
1 TGGTAATTCTGTAAATCGAGGGGAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
51341183 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
51341199 TGGTAATT
1 TGGTAATT
51341207 TTACAAGTCG
Statistics
Matches: 147, Mismatches: 17, Indels: 12
0.84 0.10 0.07
Matches are distributed among these distances:
80 2 0.01
81 142 0.97
82 3 0.02
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (81 bp):
TGGTAATTCTGTAAATCGAGGGGAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTG
TAAATCGAGGGTAAAA
Found at i:51343486 original size:20 final size:20
Alignment explanation
Indices: 51343463--51343512 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
51343453 CAGCTCGAAC
*
51343463 CAGCTCACTTGAGCTTAATT
1 CAGCTCACTTGAGCCTAATT
*
51343483 CAGCTCATTTGAGCCTAATT
1 CAGCTCACTTGAGCCTAATT
* *
51343503 TAGCTTACTT
1 CAGCTCACTT
51343513 TCAGCTCGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (20 bp):
CAGCTCACTTGAGCCTAATT
Found at i:51346107 original size:14 final size:14
Alignment explanation
Indices: 51346088--51346116 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
51346078 AAATTAAATG
51346088 AGAAAAGAAAAAGA
1 AGAAAAGAAAAAGA
51346102 AGAAAAGAAAAAGA
1 AGAAAAGAAAAAGA
51346116 A
1 A
51346117 AAAGTACGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (14 bp):
AGAAAAGAAAAAGA
Found at i:51346120 original size:50 final size:48
Alignment explanation
Indices: 51346012--51346118 Score: 119
Period size: 50 Copynumber: 2.2 Consensus size: 48
51346002 ATTGTGAAAT
*
51346012 AAAGAAATGAAAATGAAAATGAAACGAAAAATGAAAAAAAGAAAGCAA
1 AAAGAAAAGAAAATGAAAATGAAACGAAAAATGAAAAAAAGAAAGCAA
* * *
51346060 AATAGCAAAAGAAAGTGAAAATTAAATGAGAAAA-GAAAAAGAAGAAAAG-AA
1 AA-AG-AAAAGAAAATGAAAATGAAACGA-AAAATGAAAAA-AAG-AAAGCAA
51346111 AAAGAAAA
1 AAAGAAAA
51346119 AGTACGTCTA
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
48 2 0.04
49 6 0.12
50 27 0.54
51 11 0.22
52 4 0.08
ACGTcount: A:0.71, C:0.03, G:0.18, T:0.08
Consensus pattern (48 bp):
AAAGAAAAGAAAATGAAAATGAAACGAAAAATGAAAAAAAGAAAGCAA
Found at i:51349126 original size:20 final size:20
Alignment explanation
Indices: 51349087--51349131 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
51349077 CAGCTTGAAC
**
51349087 CAGCTCATTTGAGCTTAATT
1 CAGCTCATTTGAGCCCAATT
51349107 CAGCTCATTTGAGCCCAATT
1 CAGCTCATTTGAGCCCAATT
*
51349127 TAGCT
1 CAGCT
51349132 TACTTTCAGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (20 bp):
CAGCTCATTTGAGCCCAATT
Found at i:51351445 original size:26 final size:26
Alignment explanation
Indices: 51351416--51351498 Score: 69
Period size: 26 Copynumber: 3.1 Consensus size: 26
51351406 AACTTATTTG
*
51351416 AAATACTGATATCATGGCCCGAAGCC
1 AAATACCGATATCATGGCCCGAAGCC
* *
51351442 AAATTAGCCAATATGCATGGCCCAAAGCC
1 AAA-TA-CCGATAT-CATGGCCCGAAGCC
* * *
51351471 AAAT-CGGTTTAACATGGCCCGAAGCC
1 AAATACCG-ATATCATGGCCCGAAGCC
51351497 AA
1 AA
51351499 CTCAAAGTAT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
26 19 0.42
27 4 0.09
28 6 0.13
29 16 0.36
ACGTcount: A:0.36, C:0.27, G:0.19, T:0.18
Consensus pattern (26 bp):
AAATACCGATATCATGGCCCGAAGCC
Found at i:51357909 original size:29 final size:29
Alignment explanation
Indices: 51357808--51357901 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
51357798 GTGACGAGAT
51357808 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
51357837 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
51357866 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
51357895 CGGCACT
1 TGGCACT
51357902 GGGTGTGCGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:51357926 original size:58 final size:58
Alignment explanation
Indices: 51357804--51357938 Score: 175
Period size: 58 Copynumber: 2.3 Consensus size: 58
51357794 TACGGTGACG
* *
51357804 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
51357861 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
51357919 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
51357939 GGGCTTAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 3 0.04
58 63 0.94
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:51365761 original size:29 final size:29
Alignment explanation
Indices: 51365728--51365821 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
51365718 GTGACGAGAT
51365728 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
51365757 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
51365786 TGGCACTAAGTCTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
51365815 CGGCACT
1 TGGCACT
51365822 GGGTGTGCGA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:51365846 original size:58 final size:58
Alignment explanation
Indices: 51365724--51365851 Score: 161
Period size: 58 Copynumber: 2.2 Consensus size: 58
51365714 TACGGTGACG
* * *
51365724 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTCTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
51365781 ATATATGGCACTAAGTCTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTCTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* *
51365839 GGGTATGGCACTA
1 AGATATGGCACTA
51365852 TGTGTGCGGG
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
57 3 0.05
58 56 0.93
59 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTCTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:51367198 original size:46 final size:46
Alignment explanation
Indices: 51367148--51367323 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
51367138 TATTTGGGCA
51367148 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51367194 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
51367239 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
51367287 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51367324 GCGGTTACAT
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51367260 original size:93 final size:93
Alignment explanation
Indices: 51367144--51367315 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
51367134 TGGATATTTG
* *
51367144 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
51367209 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
51367237 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
51367302 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
51367316 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:51370316 original size:15 final size:15
Alignment explanation
Indices: 51370245--51370321 Score: 68
Period size: 15 Copynumber: 5.2 Consensus size: 15
51370235 CATAGTATCG
*
51370245 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTT
* *
51370260 TATCCTGGATCTCTT
1 TATCTTGGATTTCTT
*
51370275 TTTC-TGGATTTCTT
1 TATCTTGGATTTCTT
* * *
51370289 TAT-TCCGGGTTTCTC
1 TATCT-TGGATTTCTT
51370304 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
51370319 TAT
1 TAT
51370322 TCGGTTTTCT
Statistics
Matches: 47, Mismatches: 12, Indels: 6
0.72 0.18 0.09
Matches are distributed among these distances:
14 11 0.23
15 35 0.74
16 1 0.02
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Done.