Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr04 98600468 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 98600468 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Warning! 273 characters in sequence are not A, C, G, or T File 192 of 325 Found at i:58990248 original size:95 final size:96 Alignment explanation
Indices: 58990080--58990349 Score: 318 Period size: 95 Copynumber: 2.8 Consensus size: 96 58990070 CAAAGTACCA * * * ** 58990080 ATGCCATGACCCAGACATGGTCTTACATGAATCCACATATA--ATCGCCAATGCCATGTCCCAGA 1 ATGCCATGTCCCAAACATGGTCTTACA--CAGGCACATATATCATCGCCAATGCCATGTCCCAGA 58990143 CATGGTCTTACA-ATGGCACATATATCATCCCCG 64 CATGGTCTTACACA-GGCACATATATCATCCCCG * 58990176 ATGCCATGTCCCAAACATGGTCTTATACAGGCACATATATCATCGCC-ATGCCATGTCCCAGACA 1 ATGCCATGTCCCAAACATGGTCTTACACAGGCACATATATCATCGCCAATGCCATGTCCCAGACA * *** 58990240 TGGTCTTACACAGGTACATATATCATCGTTG 66 TGGTCTTACACAGGCACATATATCATCCCCG * * * * 58990271 ATGCCATGTCCTAGACATGGTCTTACACAGGCACACT-TCTCGGAT-GCCAATGCCATGTCCCAA 1 ATGCCATGTCCCAAACATGGTCTTACACAGGCACA-TATATC--ATCGCCAATGCCATGTCCCAG 58990334 ACATGGTCTTACACAG 63 ACATGGTCTTACACAG 58990350 AATCTCATTT Statistics Matches: 152, Mismatches: 15, Indels: 13 0.84 0.08 0.07 Matches are distributed among these distances: 94 9 0.06 95 77 0.51 96 35 0.23 97 31 0.20 ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25 Consensus pattern (96 bp): ATGCCATGTCCCAAACATGGTCTTACACAGGCACATATATCATCGCCAATGCCATGTCCCAGACA TGGTCTTACACAGGCACATATATCATCCCCG Found at i:59004299 original size:130 final size:129 Alignment explanation
Indices: 59004128--59004372 Score: 402 Period size: 130 Copynumber: 1.9 Consensus size: 129 59004118 GGAAAAAAAT 59004128 GCCGCTAAAGGTCAAGGCTTTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTT 1 GCCGCTAAAGGTCAAGGCTTTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTT * 59004193 AGCAGCGTTTGTG-GAAAAAGCGCAGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGC 66 AGCAGCGTTTGTGCG-AAAAGCGCAGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGC * * * 59004257 GCCGCTAAATGTCAAGGCTTTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCAAGGCTTT 1 GCCGCTAAAGGTCAAGGC-TTTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTT * * * 59004322 TAGCGGCGTTTGTGCGTAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCG 65 TAGCAGCGTTTGTGCGAAAAGCGCAGCTAAACGTCAAGGCTTTTAGCGGCG 59004373 CTTTTTTTAC Statistics Matches: 107, Mismatches: 7, Indels: 3 0.91 0.06 0.03 Matches are distributed among these distances: 129 17 0.16 130 89 0.83 131 1 0.01 ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25 Consensus pattern (129 bp): GCCGCTAAAGGTCAAGGCTTTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTT AGCAGCGTTTGTGCGAAAAGCGCAGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGC Found at i:59004324 original size:87 final size:86 Alignment explanation
Indices: 59004128--59004372 Score: 402 Period size: 87 Copynumber: 2.8 Consensus size: 86 59004118 GGAAAAAAAT * * * 59004128 GCCGCTAAAGGTCAAGGCTTTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTT 1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAACGTCAAGGCTTTT * 59004193 AGCAGCGTTTGTGGAAAAAGC 66 AGCGGCGTTTGTGGAAAAAGC * * 59004214 GCAGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAATGTCAAGGCTTTT 1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAACGTCAAGGC-TTT * 59004279 TAGCGGCGTTTGTGGTAAAAGC 65 TAGCGGCGTTTGTGGAAAAAGC 59004301 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGCGT-AAAGCGCCGCTAAACGTCAAGGCTTT 1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTG-GTAAAAGCGCCGCTAAACGTCAAGGCTTT 59004365 TAGCGGCG 65 TAGCGGCG 59004373 CTTTTTTTAC Statistics Matches: 149, Mismatches: 8, Indels: 4 0.93 0.05 0.02 Matches are distributed among these distances: 86 68 0.46 87 79 0.53 88 2 0.01 ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25 Consensus pattern (86 bp): GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAACGTCAAGGCTTTT AGCGGCGTTTGTGGAAAAAGC Found at i:59004395 original size:43 final size:43 Alignment explanation
Indices: 59004128--59004372 Score: 402 Period size: 43 Copynumber: 5.7 Consensus size: 43 59004118 GGAAAAAAAT * * 59004128 GCCGCTAAAGGTCAAGGCTTTTAGCAGCGTTTGTGGGAAAAGC 1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGC * * 59004171 GCCGCTAAAGGTCAAGGCTTTTAGCAGCGTTTGTGGAAAAAGC 1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGC * 59004214 GCAGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGC 1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGC * 59004257 GCCGCTAAATGTCAAGGCTTTTTAGCGGCGTTTGTGGTAAAAGC 1 GCCGCTAAAGGTCAAGGC-TTTTAGCGGCGTTTGTGGTAAAAGC 59004301 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGCGT-AAAGC 1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTG-GTAAAAGC * 59004344 GCCGCTAAACGTCAAGGCTTTTAGCGGCG 1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCG 59004373 CTTTTTTTAC Statistics Matches: 192, Mismatches: 8, Indels: 4 0.94 0.04 0.02 Matches are distributed among these distances: 43 148 0.77 44 44 0.23 ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25 Consensus pattern (43 bp): GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGC Found at i:59004818 original size:21 final size:21 Alignment explanation
Indices: 59004768--59004818 Score: 57 Period size: 21 Copynumber: 2.4 Consensus size: 21 59004758 CCATCGCTCG * 59004768 TGCCTCTGCCTCTCTCGCTAC 1 TGCCTCTGCCTCCCTCGCTAC * * * * 59004789 AGCCGCTGCCTCCCTCTCTGC 1 TGCCTCTGCCTCCCTCGCTAC 59004810 TGCCTCTGC 1 TGCCTCTGC 59004819 TCTAAGTTGT Statistics Matches: 23, Mismatches: 7, Indels: 0 0.77 0.23 0.00 Matches are distributed among these distances: 21 23 1.00 ACGTcount: A:0.04, C:0.49, G:0.18, T:0.29 Consensus pattern (21 bp): TGCCTCTGCCTCCCTCGCTAC Found at i:59010464 original size:9 final size:9 Alignment explanation
Indices: 59010452--59010668 Score: 184 Period size: 9 Copynumber: 23.4 Consensus size: 9 59010442 AATTATATAT * 59010452 TTATCTAAG 1 TTATATAAG 59010461 TTATATAAG 1 TTATATAAG * 59010470 TTATGTAAG 1 TTATATAAG * * 59010479 TTATGTAAAT 1 TTATAT-AAG * 59010489 TATGATATAAAA 1 T-T-ATAT-AAG * 59010501 TATATTTAAG 1 T-TATATAAG * 59010511 TATTATGTAAG 1 --TTATATAAG * 59010522 TTATGTAAG 1 TTATATAAG * 59010531 TTATAT-AT 1 TTATATAAG * 59010539 TTATCTAAG 1 TTATATAAG 59010548 TTATATAAG 1 TTATATAAG 59010557 TTATATAAG 1 TTATATAAG * * 59010566 TTATGTATG 1 TTATATAAG 59010575 TTATATAAG 1 TTATATAAG * 59010584 TTATGTAAG 1 TTATATAAG * 59010593 TTATATATG 1 TTATATAAG 59010602 TTATATAAG 1 TTATATAAG * 59010611 TTATGTAAG 1 TTATATAAG 59010620 TTATATAAG 1 TTATATAAG 59010629 TTATATAAG 1 TTATATAAG * * 59010638 TTATGTACG 1 TTATATAAG * * 59010647 TTTTGTAAG 1 TTATATAAG * 59010656 TTATATAAA 1 TTATATAAG 59010665 TTAT 1 TTAT 59010669 GATATCAAAT Statistics Matches: 172, Mismatches: 30, Indels: 12 0.80 0.14 0.06 Matches are distributed among these distances: 8 6 0.03 9 140 0.81 10 5 0.03 11 11 0.06 12 10 0.06 ACGTcount: A:0.38, C:0.01, G:0.13, T:0.47 Consensus pattern (9 bp): TTATATAAG Found at i:59010491 original size:27 final size:27 Alignment explanation
Indices: 59010452--59010669 Score: 222 Period size: 27 Copynumber: 7.9 Consensus size: 27 59010442 AATTATATAT * 59010452 TTATCTAAGTTATATAAGTTATGTAAG 1 TTATGTAAGTTATATAAGTTATGTAAG * * * 59010479 TTATGTAAATTATGATATAAAATATATTTAAG 1 TTATGT-AAGT-T-ATAT-AAGT-TATGTAAG * * * 59010511 TATTATGTAAGTTATGTAAGTTATAT-AT 1 --TTATGTAAGTTATATAAGTTATGTAAG * * 59010539 TTATCTAAGTTATATAAGTTATATAAG 1 TTATGTAAGTTATATAAGTTATGTAAG * 59010566 TTATGTATGTTATATAAGTTATGTAAG 1 TTATGTAAGTTATATAAGTTATGTAAG * * 59010593 TTATATATGTTATATAAGTTATGTAAG 1 TTATGTAAGTTATATAAGTTATGTAAG * * 59010620 TTATATAAGTTATATAAGTTATGTACG 1 TTATGTAAGTTATATAAGTTATGTAAG * * 59010647 TTTTGTAAGTTATATAAATTATG 1 TTATGTAAGTTATATAAGTTATG 59010670 ATATCAAATA Statistics Matches: 162, Mismatches: 21, Indels: 16 0.81 0.11 0.08 Matches are distributed among these distances: 26 22 0.14 27 101 0.62 28 4 0.02 29 5 0.03 30 7 0.04 31 6 0.04 32 8 0.05 33 3 0.02 34 6 0.04 ACGTcount: A:0.38, C:0.01, G:0.14, T:0.47 Consensus pattern (27 bp): TTATGTAAGTTATATAAGTTATGTAAG Found at i:59010794 original size:15 final size:15 Alignment explanation
Indices: 59010774--59010829 Score: 64 Period size: 15 Copynumber: 3.8 Consensus size: 15 59010764 AAGTAGCGGG 59010774 ATTAAATAATATTTA 1 ATTAAATAATATTTA 59010789 ATTAAATAATATTT- 1 ATTAAATAATATTTA 59010803 A-TAAA-AATTATTTTA 1 ATTAAATAA-TA-TTTA * 59010818 ATTAAGTAATAT 1 ATTAAATAATAT 59010830 ACATGTCGTT Statistics Matches: 35, Mismatches: 1, Indels: 10 0.76 0.02 0.22 Matches are distributed among these distances: 12 2 0.06 13 6 0.17 14 4 0.11 15 16 0.46 16 5 0.14 17 2 0.06 ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46 Consensus pattern (15 bp): ATTAAATAATATTTA Found at i:59015341 original size:10 final size:11 Alignment explanation
Indices: 59015320--59015370 Score: 57 Period size: 12 Copynumber: 4.3 Consensus size: 11 59015310 ACTAAACCAC 59015320 TTTTCATATATA 1 TTTT-ATATATA 59015332 TATTTATATATA 1 T-TTTATATATA * 59015344 TTTTAAAATAATA 1 TTTT-ATAT-ATA 59015357 TTTTATATATA 1 TTTTATATATA 59015368 TTT 1 TTT 59015371 ATCTTATATA Statistics Matches: 34, Mismatches: 2, Indels: 7 0.79 0.05 0.16 Matches are distributed among these distances: 11 9 0.26 12 15 0.44 13 10 0.29 ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59 Consensus pattern (11 bp): TTTTATATATA Found at i:59015379 original size:15 final size:15 Alignment explanation
Indices: 59015359--59015390 Score: 55 Period size: 15 Copynumber: 2.1 Consensus size: 15 59015349 AAATAATATT * 59015359 TTATATATATTTATC 1 TTATATACATTTATC 59015374 TTATATACATTTATC 1 TTATATACATTTATC 59015389 TT 1 TT 59015391 CTAAATTAAT Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 15 16 1.00 ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59 Consensus pattern (15 bp): TTATATACATTTATC Found at i:59016467 original size:41 final size:41 Alignment explanation
Indices: 59016410--59016604 Score: 278 Period size: 41 Copynumber: 4.9 Consensus size: 41 59016400 GTTATGAGAT 59016410 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGC 1 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGC * 59016451 TTTTAGCGGCGTTTTACCT-AAAGTGCCGCTAA-----T-GC 1 TTTTAGCGGCGTTTTA-CTGAAAGCGCCGCTAATGCTCTGGC * 59016486 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTTGC 1 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGC * 59016527 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGC 1 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGC * * * 59016568 TTTTAGCGGTGTTTTACAGAAAACGCCGCTAATGCTC 1 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTC 59016605 ATAGGGCGAA Statistics Matches: 140, Mismatches: 6, Indels: 16 0.86 0.04 0.10 Matches are distributed among these distances: 34 2 0.01 35 30 0.21 36 1 0.01 40 1 0.01 41 104 0.74 42 2 0.01 ACGTcount: A:0.19, C:0.24, G:0.25, T:0.32 Consensus pattern (41 bp): TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGC Found at i:59016536 original size:76 final size:78 Alignment explanation
Indices: 59016410--59016604 Score: 277 Period size: 76 Copynumber: 2.5 Consensus size: 78 59016400 GTTATGAGAT ** * 59016410 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGCTTTTAGCGGCGTTTTACCTAAAGT 1 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGCTTTTAGCGGCGTTTTACAGAAAGC 59016475 GCCGCTAA-T-GC 66 GCCGCTAACTGGC * 59016486 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTTGCTTTTAGCGGCGTTTTACAGAAAGC 1 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGCTTTTAGCGGCGTTTTACAGAAAGC 59016551 GCCGCTAATGCTCTGGC 66 GCCGCTAA----CTGGC * * * 59016568 TTTTAGCGGTGTTTTACAGAAAACGCCGCTAATGCTC 1 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTC 59016605 ATAGGGCGAA Statistics Matches: 106, Mismatches: 7, Indels: 6 0.89 0.06 0.05 Matches are distributed among these distances: 76 69 0.65 81 1 0.01 82 36 0.34 ACGTcount: A:0.19, C:0.24, G:0.25, T:0.32 Consensus pattern (78 bp): TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGCTTTTAGCGGCGTTTTACAGAAAGC GCCGCTAACTGGC Found at i:59019002 original size:18 final size:18 Alignment explanation
Indices: 59018923--59019016 Score: 131 Period size: 18 Copynumber: 5.4 Consensus size: 18 59018913 CAAGGTCCCG * 59018923 ATCAATAGCGTCACTATC 1 ATCAATATCGTCACTATC * * 59018941 ATCAATAGCGTCACTAGC 1 ATCAATATCGTCACTATC * 59018959 ATCAATATCGTCACTAGC 1 ATCAATATCGTCACTATC 59018977 ATCAATATCGTCACTATC 1 ATCAATATCGTCACTATC 59018995 ATCAATATCG--A-TATC 1 ATCAATATCGTCACTATC 59019010 ATCAATA 1 ATCAATA 59019017 AGAAAACCTT Statistics Matches: 73, Mismatches: 3, Indels: 3 0.92 0.04 0.04 Matches are distributed among these distances: 15 11 0.15 16 1 0.01 18 61 0.84 ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29 Consensus pattern (18 bp): ATCAATATCGTCACTATC Found at i:59019003 original size:9 final size:9 Alignment explanation
Indices: 59018923--59019003 Score: 54 Period size: 9 Copynumber: 9.0 Consensus size: 9 59018913 CAAGGTCCCG * 59018923 ATCAATAGC 1 ATCAATATC * * 59018932 GTCACTATC 1 ATCAATATC * 59018941 ATCAATAGC 1 ATCAATATC * * * 59018950 GTCACTAGC 1 ATCAATATC 59018959 ATCAATATC 1 ATCAATATC * * * 59018968 GTCACTAGC 1 ATCAATATC 59018977 ATCAATATC 1 ATCAATATC * * 59018986 GTCACTATC 1 ATCAATATC 59018995 ATCAATATC 1 ATCAATATC 59019004 GATATCATCA Statistics Matches: 51, Mismatches: 21, Indels: 0 0.71 0.29 0.00 Matches are distributed among these distances: 9 51 1.00 ACGTcount: A:0.35, C:0.27, G:0.10, T:0.28 Consensus pattern (9 bp): ATCAATATC Found at i:59021412 original size:21 final size:21 Alignment explanation
Indices: 59021382--59021470 Score: 90 Period size: 21 Copynumber: 4.1 Consensus size: 21 59021372 CTCACAAAGA * * 59021382 AAAAAG-GAAGTGAGTTAGAC 1 AAAAAGAGAAGTAACTTAGAC * * 59021402 AAAAAGAGAAGCAACTTGGAC 1 AAAAAGAGAAGTAACTTAGAC * 59021423 AAAAAGAGAAGTAACTTGGAC 1 AAAAAGAGAAGTAACTTAGAC * 59021444 AAAAAGAAACGAAGTGACTTAGAC 1 AAAAAG--A-GAAGTAACTTAGAC 59021468 AAA 1 AAA 59021471 TCTTTTTTGT Statistics Matches: 58, Mismatches: 7, Indels: 4 0.84 0.10 0.06 Matches are distributed among these distances: 20 6 0.10 21 36 0.62 23 1 0.02 24 15 0.26 ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12 Consensus pattern (21 bp): AAAAAGAGAAGTAACTTAGAC Found at i:59021463 original size:24 final size:21 Alignment explanation
Indices: 59021382--59021450 Score: 95 Period size: 21 Copynumber: 3.3 Consensus size: 21 59021372 CTCACAAAGA * * * 59021382 AAAAAG-GAAGTGAGTTAGAC 1 AAAAAGAGAAGTAACTTGGAC * 59021402 AAAAAGAGAAGCAACTTGGAC 1 AAAAAGAGAAGTAACTTGGAC 59021423 AAAAAGAGAAGTAACTTGGAC 1 AAAAAGAGAAGTAACTTGGAC 59021444 AAAAAGA 1 AAAAAGA 59021451 AACGAAGTGA Statistics Matches: 43, Mismatches: 5, Indels: 1 0.88 0.10 0.02 Matches are distributed among these distances: 20 6 0.14 21 37 0.86 ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12 Consensus pattern (21 bp): AAAAAGAGAAGTAACTTGGAC Found at i:59045206 original size:27 final size:27 Alignment explanation
Indices: 59045149--59045300 Score: 144 Period size: 27 Copynumber: 5.6 Consensus size: 27 59045139 CATGATAGCT ** * * * 59045149 AAAGAATAGCCTTTGTGGCAAATTTTG 1 AAAGAATAGCCTTTGTGGTGAACTCTA * 59045176 AAAGAATAGCCATTGTGGTGAACTCTA 1 AAAGAATAGCCTTTGTGGTGAACTCTA * * * 59045203 AAAGGATAGTCTTTGTGTTGAACTCTA 1 AAAGAATAGCCTTTGTGGTGAACTCTA * * * * 59045230 AAAGAATAACCTTTGTGATGAATTCTG 1 AAAGAATAGCCTTTGTGGTGAACTCTA * * * 59045257 AAAGAATAGTCTTTGTAGTGAACTTTA 1 AAAGAATAGCCTTTGTGGTGAACTCTA 59045284 AAAGAA-ATGCCTTTGTG 1 AAAGAATA-GCCTTTGTG 59045301 AAAAATTCTG Statistics Matches: 99, Mismatches: 25, Indels: 2 0.79 0.20 0.02 Matches are distributed among these distances: 26 1 0.01 27 98 0.99 ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33 Consensus pattern (27 bp): AAAGAATAGCCTTTGTGGTGAACTCTA Found at i:59045298 original size:81 final size:81 Alignment explanation
Indices: 59045149--59045300 Score: 189 Period size: 81 Copynumber: 1.9 Consensus size: 81 59045139 CATGATAGCT * * * * * * 59045149 AAAGAATAGCCTTTGTGGCAAATTTTGAAAGAATAGCCATTGTGGTGAACTCTAAAAGGATAGTC 1 AAAGAATAACCTTTGTGACAAATTCTGAAAGAATAGCCATTGTAGTGAACTCTAAAAGAATAGCC 59045214 TTTGTGTTGAACTCTA 66 TTTGTGTTGAACTCTA ** * * * 59045230 AAAGAATAACCTTTGTGATGAATTCTGAAAGAATAGTCTTTGTAGTGAACTTTAAAAGAA-ATGC 1 AAAGAATAACCTTTGTGACAAATTCTGAAAGAATAGCCATTGTAGTGAACTCTAAAAGAATA-GC 59045294 CTTTGTG 65 CTTTGTG 59045301 AAAAATTCTG Statistics Matches: 59, Mismatches: 11, Indels: 2 0.82 0.15 0.03 Matches are distributed among these distances: 80 1 0.02 81 58 0.98 ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33 Consensus pattern (81 bp): AAAGAATAACCTTTGTGACAAATTCTGAAAGAATAGCCATTGTAGTGAACTCTAAAAGAATAGCC TTTGTGTTGAACTCTA Found at i:59045441 original size:19 final size:19 Alignment explanation
Indices: 59045417--59045454 Score: 76 Period size: 19 Copynumber: 2.0 Consensus size: 19 59045407 TGAATATGAA 59045417 TGTCTATCTCTATGGTAAG 1 TGTCTATCTCTATGGTAAG 59045436 TGTCTATCTCTATGGTAAG 1 TGTCTATCTCTATGGTAAG 59045455 ATATGAGTAA Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 19 19 1.00 ACGTcount: A:0.21, C:0.16, G:0.21, T:0.42 Consensus pattern (19 bp): TGTCTATCTCTATGGTAAG Found at i:59049237 original size:39 final size:38 Alignment explanation
Indices: 59049057--59049259 Score: 183 Period size: 38 Copynumber: 5.2 Consensus size: 38 59049047 CTAACACTTG * * * * * 59049057 GCCTGCGAGGAATAAACCCAAACATAACACCAGCACGAA 1 GCCTGCG-GGATTTAACCCAGATATAATACCAGCACGAA * * * * 59049096 GCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAG 1 GCCTGCGGGA-TTT-AACCCAGATATAATACCAGCACGAA * * * 59049136 GCCTGTGGGATTTAACCCAGATAAAATACTAGCACGAA 1 GCCTGCGGGATTTAACCCAGATATAATACCAGCACGAA * * 59049174 GCCTGCGGGATTTAACCCGGATATATTACCAGCACGAA 1 GCCTGCGGGATTTAACCCAGATATAATACCAGCACGAA * * * * * 59049212 GCCTGCTGGGTTTTAACTCGGATATAATTCCAGCA-TATA 1 GCCTGC-GGGATTTAACCCAGATATAATACCAGCACGA-A 59049251 GCCTGCGGG 1 GCCTGCGGG 59049260 TCTTTAAGCC Statistics Matches: 134, Mismatches: 26, Indels: 9 0.79 0.15 0.05 Matches are distributed among these distances: 38 66 0.49 39 41 0.31 40 27 0.20 ACGTcount: A:0.33, C:0.25, G:0.22, T:0.21 Consensus pattern (38 bp): GCCTGCGGGATTTAACCCAGATATAATACCAGCACGAA Found at i:59053475 original size:57 final size:58 Alignment explanation
Indices: 59053397--59053505 Score: 148 Period size: 57 Copynumber: 1.9 Consensus size: 58 59053387 GCCCACTGAT * * 59053397 CGATCTCGCACACATAGTGCTCGGTTGAA-GAACTCGCACACATAGTGCCTCAATTAC 1 CGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTCAATTAC * * * * * 59053454 CGATTTCGTACACATTGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC 1 CGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTC 59053506 TAATCATTCG Statistics Matches: 44, Mismatches: 7, Indels: 1 0.85 0.13 0.02 Matches are distributed among these distances: 57 25 0.57 58 19 0.43 ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26 Consensus pattern (58 bp): CGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTCAATTAC Found at i:59053720 original size:43 final size:43 Alignment explanation
Indices: 59053659--59054009 Score: 479 Period size: 43 Copynumber: 8.2 Consensus size: 43 59053649 CCTTGCTCGA ** * * * 59053659 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCAAATACAC 1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC * * * * * 59053702 ATCACTGGCATGGAGCCTGCTAGGCACGAAGGCCCGAATACAT 1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC * * * 59053745 ATCACAGACACGAAGCCTGCTAGGCATGAAA-GCCCGAATACAC 1 ATCACCGGCACGAAGCCTGCTAGGCA-CAAAGGCCCGAATACAC * 59053788 ATCACCGGCACAAAGCCTGCTAGGCACAAAGGCCCGAATACAC 1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC * * * 59053831 ATCACTGGCACGAAGCCTGCTAGGCACAAATGCCCGAATACTC 1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC * * 59053874 ATCACCAGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACTC 1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC 59053917 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC 1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC * ** * 59053960 ATCATCGATACGAAGCCTGCAAGGCACAAAGGCCCGAATACAC 1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC 59054003 ATCACCG 1 ATCACCG 59054010 AGTATCATGC Statistics Matches: 275, Mismatches: 31, Indels: 4 0.89 0.10 0.01 Matches are distributed among these distances: 42 3 0.01 43 270 0.98 44 2 0.01 ACGTcount: A:0.33, C:0.32, G:0.22, T:0.13 Consensus pattern (43 bp): ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC Found at i:59055656 original size:38 final size:38 Alignment explanation
Indices: 59055582--59055732 Score: 185 Period size: 38 Copynumber: 3.9 Consensus size: 38 59055572 ACATAACACC * *** * 59055582 AGCACGAAGCCTACGGGACTTTAAACTAAGATATAATACC 1 AGCACGAAGCCTGCGGGA-TTT-AACCCGGATATAATACA * * * * 59055622 AGCACCAGGCCTGTGGGATTTAACCCGGATATAATACT 1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATACA * * 59055660 AGCATGAAGCCTGCGGGATTTAACCCGGATATATTACA 1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATACA 59055698 AGCACGAAGCCTGCGGGATTTAACCCGGATATAAT 1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAAT 59055733 TCCAACATAT Statistics Matches: 95, Mismatches: 16, Indels: 2 0.84 0.14 0.02 Matches are distributed among these distances: 38 78 0.82 39 3 0.03 40 14 0.15 ACGTcount: A:0.33, C:0.23, G:0.23, T:0.22 Consensus pattern (38 bp): AGCACGAAGCCTGCGGGATTTAACCCGGATATAATACA Found at i:59055716 original size:76 final size:78 Alignment explanation
Indices: 59055611--59055768 Score: 205 Period size: 76 Copynumber: 2.1 Consensus size: 78 59055601 TTTAAACTAA * * * * * 59055611 GATATAATACCAGCACCAGGCCTGTGGGATTTAACCCGGATATAATACTAGCATGA-AGCCTGCG 1 GATATAATACAAGCACCAAGCCTGCGGGATTTAACCCGGATATAATACCAACAT-ATAGCCTGCG 59055675 GG-ATTTAA-CCCG 65 GGTATTTAAGCCCG * * * 59055687 GATATATTACAAGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCCAACATATAGCCTGCGG 1 GATATAATACAAGCACCAAGCCTGCGGGATTTAACCCGGATATAATACCAACATATAGCCTGCGG * 59055752 GTCTTTAAGCCCG 66 GTATTTAAGCCCG 59055765 GATA 1 GATA 59055769 CACATCAAAT Statistics Matches: 70, Mismatches: 9, Indels: 4 0.84 0.11 0.05 Matches are distributed among these distances: 75 1 0.01 76 56 0.80 77 5 0.07 78 8 0.11 ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23 Consensus pattern (78 bp): GATATAATACAAGCACCAAGCCTGCGGGATTTAACCCGGATATAATACCAACATATAGCCTGCGG GTATTTAAGCCCG Found at i:59055747 original size:38 final size:37 Alignment explanation
Indices: 59055630--59055768 Score: 154 Period size: 38 Copynumber: 3.6 Consensus size: 37 59055620 CCAGCACCAG * * * * 59055630 GCCTGTGGGATTTAACCCGGATATAATACTAGCATGAA 1 GCCTGCGGGATTTAACCCGGATATAATTCCAACAT-AA * * 59055668 GCCTGCGGGATTTAACCCGGATAT-ATTACAAGCACGAA 1 GCCTGCGGGATTTAACCCGGATATAATTCCAA-CA-TAA 59055706 GCCTGCGGGATTTAACCCGGATATAATTCCAACATATA 1 GCCTGCGGGATTTAACCCGGATATAATTCCAACATA-A * 59055744 GCCTGCGGGTCTTTAAGCCCGGATA 1 GCCTGCGGG-ATTTAA-CCCGGATA 59055769 CACATCAAAT Statistics Matches: 86, Mismatches: 9, Indels: 10 0.82 0.09 0.10 Matches are distributed among these distances: 37 4 0.05 38 63 0.73 39 11 0.13 40 8 0.09 ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24 Consensus pattern (37 bp): GCCTGCGGGATTTAACCCGGATATAATTCCAACATAA Found at i:59058168 original size:2 final size:2 Alignment explanation
Indices: 59058161--59058191 Score: 62 Period size: 2 Copynumber: 15.5 Consensus size: 2 59058151 ACATTAAATG 59058161 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 59058192 TAACTCAGTT Statistics Matches: 29, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 29 1.00 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (2 bp): TA Found at i:59065989 original size:27 final size:28 Alignment explanation
Indices: 59065926--59065998 Score: 121 Period size: 27 Copynumber: 2.6 Consensus size: 28 59065916 TTAAAATTTG 59065926 TATAGCACTAAGTGTGCGAGTTTGATCA 1 TATAGCACTAAGTGTGCGAGTTTGATCA * * 59065954 TATAACACTAAGTGTGCGAG-TTGATTA 1 TATAGCACTAAGTGTGCGAGTTTGATCA 59065981 TATAGCACTAAGTGTGCG 1 TATAGCACTAAGTGTGCG 59065999 GACTCACTAT Statistics Matches: 42, Mismatches: 3, Indels: 1 0.91 0.07 0.02 Matches are distributed among these distances: 27 23 0.55 28 19 0.45 ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32 Consensus pattern (28 bp): TATAGCACTAAGTGTGCGAGTTTGATCA Found at i:59072036 original size:29 final size:29 Alignment explanation
Indices: 59071996--59072069 Score: 96 Period size: 29 Copynumber: 2.6 Consensus size: 29 59071986 GTTGAGAGAT * * 59071996 TGGCACTGAGTGTGCGAGCTTGAAA-TGCA 1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA * * 59072025 TGGCACTAAGTGTGCGAGTTTAAAGTATA 1 TGGCACTAAGTGTGCGAGTTGAAAGTACA 59072054 TGGCACTAAGTGTGCG 1 TGGCACTAAGTGTGCG 59072070 CGGCTGATTA Statistics Matches: 40, Mismatches: 4, Indels: 2 0.87 0.09 0.04 Matches are distributed among these distances: 28 5 0.12 29 35 0.88 ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27 Consensus pattern (29 bp): TGGCACTAAGTGTGCGAGTTGAAAGTACA Found at i:59080088 original size:29 final size:29 Alignment explanation
Indices: 59080048--59080121 Score: 96 Period size: 29 Copynumber: 2.6 Consensus size: 29 59080038 GTTGAGAGAT * * 59080048 TGGCACTGAGTGTGCGAGCTTGAAA-TGCA 1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA * * 59080077 TGGCACTAAGTGTGCGAGTTTAAAGTATA 1 TGGCACTAAGTGTGCGAGTTGAAAGTACA 59080106 TGGCACTAAGTGTGCG 1 TGGCACTAAGTGTGCG 59080122 CGGCTGATTA Statistics Matches: 40, Mismatches: 4, Indels: 2 0.87 0.09 0.04 Matches are distributed among these distances: 28 5 0.12 29 35 0.88 ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27 Consensus pattern (29 bp): TGGCACTAAGTGTGCGAGTTGAAAGTACA Found at i:59082693 original size:41 final size:40 Alignment explanation
Indices: 59082648--59082733 Score: 111 Period size: 40 Copynumber: 2.1 Consensus size: 40 59082638 GCTAGGTTTA * * 59082648 AAGCCCAAATCCAATCACCACCACAAAGCATGCGGGACTTT 1 AAGCCCAAATACAAT-ACCAACACAAAGCATGCGGGACTTT * * * 59082689 AAGCCCAGATATAATACCAACACAAAGCCTGCGGGACTTT 1 AAGCCCAAATACAATACCAACACAAAGCATGCGGGACTTT 59082729 -AGCCC 1 AAGCCC 59082734 GGATATAACA Statistics Matches: 40, Mismatches: 5, Indels: 2 0.85 0.11 0.04 Matches are distributed among these distances: 39 5 0.12 40 23 0.57 41 12 0.30 ACGTcount: A:0.36, C:0.33, G:0.16, T:0.15 Consensus pattern (40 bp): AAGCCCAAATACAATACCAACACAAAGCATGCGGGACTTT Found at i:59082715 original size:40 final size:39 Alignment explanation
Indices: 59082663--59082862 Score: 138 Period size: 39 Copynumber: 5.1 Consensus size: 39 59082653 CAAATCCAAT * 59082663 CACCACCACAAAGCATGCGGGACTTTAAGCCCAGATATAA 1 CACCAACACAAAGCATGCGGGACTTT-AGCCCAGATATAA * * * 59082703 TACCAACACAAAGCCTGCGGGACTTTAGCCCGGATATAA 1 CACCAACACAAAGCATGCGGGACTTTAGCCCAGATATAA * * * * * * 59082742 CACCAGCACGAATGCCTTCGGG-C-TTAACCCGGATATAA 1 CACCAACAC-AAAGCATGCGGGACTTTAGCCCAGATATAA * * * * * * 59082780 CACCAGCACGAATGCTTTCGAGAC-TTAGCCCGGATATAA 1 CACCAACAC-AAAGCATGCGGGACTTTAGCCCAGATATAA * * * * * * 59082819 CACCAGCATGAATGCCTTCGGGAC-TTAGCCCGGATATAA 1 CACCAACA-CAAAGCATGCGGGACTTTAGCCCAGATATAA 59082858 CACCA 1 CACCA 59082863 GCATGAATGC Statistics Matches: 142, Mismatches: 15, Indels: 7 0.87 0.09 0.04 Matches are distributed among these distances: 38 34 0.24 39 75 0.53 40 33 0.23 ACGTcount: A:0.32, C:0.30, G:0.20, T:0.18 Consensus pattern (39 bp): CACCAACACAAAGCATGCGGGACTTTAGCCCAGATATAA Found at i:59082823 original size:39 final size:38 Alignment explanation
Indices: 59082690--59082896 Score: 263 Period size: 39 Copynumber: 5.3 Consensus size: 38 59082680 CGGGACTTTA * * * * * 59082690 AGCCCAGATATAATACCAACAC-AAAGCCTGCGGGACTTT 1 AGCCCGGATATAACACCAGCACGAATGCCTTC-GGAC-TT * 59082729 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGCTT 1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGACTT * * 59082767 AACCCGGATATAACACCAGCACGAATGCTTTCGAGACTT 1 AGCCCGGATATAACACCAGCACGAATGCCTTCG-GACTT * 59082806 AGCCCGGATATAACACCAGCATGAATGCCTTCGGGACTT 1 AGCCCGGATATAACACCAGCACGAATGCCTTC-GGACTT * * 59082845 AGCCCGGATATAACACCAGCATGAATGCCTTTAGGACTT 1 AGCCCGGATATAACACCAGCACGAATGCC-TTCGGACTT 59082884 AGCCCGGATATAA 1 AGCCCGGATATAA 59082897 TTCTCCATTA Statistics Matches: 151, Mismatches: 13, Indels: 8 0.88 0.08 0.05 Matches are distributed among these distances: 38 33 0.22 39 108 0.72 40 10 0.07 ACGTcount: A:0.31, C:0.28, G:0.21, T:0.20 Consensus pattern (38 bp): AGCCCGGATATAACACCAGCACGAATGCCTTCGGACTT Found at i:59090220 original size:40 final size:40 Alignment explanation
Indices: 59090008--59090213 Score: 335 Period size: 40 Copynumber: 5.2 Consensus size: 40 59089998 AACCCAAGTA * * * 59090008 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACGAATG 1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG * * 59090047 CCTTCGGGTCTTAGCCCGAATATAGTCACTAGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG 59090087 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG * 59090127 CCTTCGGGACGTAGCCCGGATATAGTCACTAGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG 59090167 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG 59090207 CCTTCGG 1 CCTTCGG 59090214 ATCTTAGTCC Statistics Matches: 156, Mismatches: 9, Indels: 3 0.93 0.05 0.02 Matches are distributed among these distances: 39 12 0.08 40 143 0.92 41 1 0.01 ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23 Consensus pattern (40 bp): CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG Found at i:59096294 original size:40 final size:40 Alignment explanation
Indices: 59096250--59096480 Score: 363 Period size: 40 Copynumber: 5.8 Consensus size: 40 59096240 AAATCAACGT * ** 59096250 ATGCTCTTCGGGACTTAGCCTGGATGTAACACCAGCACGA 1 ATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGA * 59096290 ATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGA 1 ATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGA ** 59096330 ATGCTCTTCGGGACTTAGCCCGGATGTAACACCAGCACGA 1 ATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGA * 59096370 ATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGA 1 ATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGA * 59096410 ATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGA 1 ATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGA * * * 59096450 ATGCTCTTCGGGGCCTAGCCCGGATATAACA 1 ATGCTCTTCGGGACTTAGCCCGGATACAACA 59096481 TACTGAACTT Statistics Matches: 177, Mismatches: 14, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 40 177 1.00 ACGTcount: A:0.25, C:0.31, G:0.24, T:0.21 Consensus pattern (40 bp): ATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGA Found at i:59098550 original size:47 final size:47 Alignment explanation
Indices: 59098484--59098821 Score: 471 Period size: 47 Copynumber: 7.1 Consensus size: 47 59098474 TATCACAGTT * * * 59098484 ATACACTTCCAC-TTCCATCACATTGACCATTCGGCCTTATCATATAT 1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCATATAC * * 59098531 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC 1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAC * 59098578 ATACACTTGCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC 1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAT--CATATAC * ** * 59098627 ATATACCATCACATTCATCACATTGGCCATTCGGCCTTATCATATAT 1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAC * 59098674 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC 1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAT--CATATAC * * 59098723 ATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC 1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAC * * 59098770 ATACACTTTCACATTCATCACGTTGGTCATTCGGCCTTATCACATATAC 1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAT--CATATAC 59098819 ATA 1 ATA 59098822 TCATGTACAT Statistics Matches: 261, Mismatches: 23, Indels: 12 0.88 0.08 0.04 Matches are distributed among these distances: 47 164 0.63 48 2 0.01 49 95 0.36 ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33 Consensus pattern (47 bp): ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAC Found at i:59098668 original size:96 final size:96 Alignment explanation
Indices: 59098484--59098822 Score: 540 Period size: 96 Copynumber: 3.6 Consensus size: 96 59098474 TATCACAGTT * * * * 59098484 ATACACTTCCAC-TTCCATCACATTGACCATTCGGCCTTAT--CATATATATATACTTTCACATT 1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATATACATATACCTTCACATT 59098546 CATCACATTGGCCATTCGGCCTTATCACATAC 65 CATCACATTGGCCATTCGGCCTTATCACATAC * * 59098578 ATACACTTGCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATATACCATCACATTC 1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATATACCTTCACATTC * * 59098643 ATCACATTGGCCATTCGGCCTTATCATATAT 66 ATCACATTGGCCATTCGGCCTTATCACATAC * * 59098674 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACCTTCACATTC 1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATATACCTTCACATTC 59098739 ATCACATTGGCCATTCGGCCTTATCACATAC 66 ATCACATTGGCCATTCGGCCTTATCACATAC * * 59098770 ATACACTTTCACATTCATCACGTTGGTCATTCGGCCTTATCACATATACATAT 1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATAT 59098823 CATGTACATC Statistics Matches: 225, Mismatches: 17, Indels: 4 0.91 0.07 0.02 Matches are distributed among these distances: 94 35 0.16 95 2 0.01 96 188 0.84 ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33 Consensus pattern (96 bp): ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATATACCTTCACATTC ATCACATTGGCCATTCGGCCTTATCACATAC Found at i:59098770 original size:143 final size:142 Alignment explanation
Indices: 59098499--59098817 Score: 525 Period size: 143 Copynumber: 2.2 Consensus size: 142 59098489 CTTCCACTTC * 59098499 CATCACATTGACCATTCGGCCTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCG 1 CATCACATTGGCCATTCGGCCTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCG 59098564 GCCTTATCACATACATACACTTGCACATTCATCACATTGGCCATTCGGCCTTATCACATATACAT 66 GCCTTATCACATACATACACTTGCACATTCATCACATTGGCCATTCGGCCTTATCACA-ATACAT * 59098629 ATACCATCACATT 130 ACACCATCACATT 59098642 CATCACATTGGCCATTCGGCCTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCG 1 CATCACATTGGCCATTCGGCCTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCG 59098707 GCCTTATCACATATACATACACCTT-CACATTCATCACATTGGCCATTCGGCCTTATCAC-ATAC 66 GCCTTATCAC--ATACATACA-CTTGCACATTCATCACATTGGCCATTCGGCCTTATCACAATAC ** 59098770 ATACACTTTCACATT 128 ATACACCATCACATT * * * 59098785 CATCACGTTGGTCATTCGGCCTTATCACATATA 1 CATCACATTGGCCATTCGGCCTTATCATATATA 59098818 CATATCATGT Statistics Matches: 166, Mismatches: 7, Indels: 6 0.93 0.04 0.03 Matches are distributed among these distances: 143 120 0.72 145 43 0.26 146 3 0.02 ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33 Consensus pattern (142 bp): CATCACATTGGCCATTCGGCCTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCG GCCTTATCACATACATACACTTGCACATTCATCACATTGGCCATTCGGCCTTATCACAATACATA CACCATCACATT Found at i:59101958 original size:39 final size:39 Alignment explanation
Indices: 59101843--59102063 Score: 298 Period size: 39 Copynumber: 5.6 Consensus size: 39 59101833 TCGTTCAAAC * * ** * ** 59101843 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG 1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT * * * * 59101883 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT 1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT 59101923 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT 1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT 59101962 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT 1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT * * * 59102001 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT 1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT 59102040 GCCTTCGGGCTTAGCCCGGATATC 1 GCCTTCGGGCTTAGCCCGGATATC 59102064 CTCGAACATT Statistics Matches: 163, Mismatches: 18, Indels: 1 0.90 0.10 0.01 Matches are distributed among these distances: 39 125 0.77 40 38 0.23 ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25 Consensus pattern (39 bp): GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT Found at i:59102043 original size:117 final size:119 Alignment explanation
Indices: 59101843--59102063 Score: 356 Period size: 117 Copynumber: 1.9 Consensus size: 119 59101833 TCGTTCAAAC * ** 59101843 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC 1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC 59101908 ACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT 66 ACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT * * ** * 59101962 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATC 1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC 59102025 ACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATC 66 ACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATC 59102064 CTCGAACATT Statistics Matches: 94, Mismatches: 8, Indels: 2 0.90 0.08 0.02 Matches are distributed among these distances: 117 53 0.56 118 32 0.34 119 9 0.10 ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25 Consensus pattern (119 bp): GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC ACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT Found at i:59110068 original size:39 final size:39 Alignment explanation
Indices: 59109981--59110172 Score: 285 Period size: 39 Copynumber: 4.9 Consensus size: 39 59109971 TATGGTAACC ** * * 59109981 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT 1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT * * 59110021 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT * * 59110060 CGCCCAATTGCCTTCGGGCTTAGCCCGGATATCATAACT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT * 59110099 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT * 59110138 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC 59110173 TCGAACATTC Statistics Matches: 140, Mismatches: 12, Indels: 1 0.92 0.08 0.01 Matches are distributed among these distances: 39 125 0.89 40 15 0.11 ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25 Consensus pattern (39 bp): CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT Found at i:59110150 original size:117 final size:119 Alignment explanation
Indices: 59109950--59110171 Score: 358 Period size: 117 Copynumber: 1.9 Consensus size: 119 59109940 TCGTTCAAAC * ** 59109950 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC 1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC 59110015 ACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT 66 ACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT * * ** * 59110069 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATC 1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC 59110132 ACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCA 66 ACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCA 59110172 CTCGAACATT Statistics Matches: 95, Mismatches: 8, Indels: 2 0.90 0.08 0.02 Matches are distributed among these distances: 117 54 0.57 118 32 0.34 119 9 0.09 ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25 Consensus pattern (119 bp): GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC ACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT Found at i:59117294 original size:18 final size:18 Alignment explanation
Indices: 59117267--59117307 Score: 73 Period size: 18 Copynumber: 2.3 Consensus size: 18 59117257 TATCATATAC * 59117267 ATAAATATTATTCATCAT 1 ATAAAGATTATTCATCAT 59117285 ATAAAGATTATTCATCAT 1 ATAAAGATTATTCATCAT 59117303 ATAAA 1 ATAAA 59117308 CCTTTTGACT Statistics Matches: 22, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 18 22 1.00 ACGTcount: A:0.49, C:0.10, G:0.02, T:0.39 Consensus pattern (18 bp): ATAAAGATTATTCATCAT Found at i:59123941 original size:14 final size:15 Alignment explanation
Indices: 59123924--59123956 Score: 50 Period size: 14 Copynumber: 2.3 Consensus size: 15 59123914 TATTTATAGT 59123924 TTAATTGAACTTAA- 1 TTAATTGAACTTAAC * 59123938 TTAATTTAACTTAAC 1 TTAATTGAACTTAAC 59123953 TTAA 1 TTAA 59123957 ATTAATCTAG Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 14 13 0.76 15 4 0.24 ACGTcount: A:0.42, C:0.09, G:0.03, T:0.45 Consensus pattern (15 bp): TTAATTGAACTTAAC Found at i:59124776 original size:19 final size:19 Alignment explanation
Indices: 59124752--59124789 Score: 76 Period size: 19 Copynumber: 2.0 Consensus size: 19 59124742 AAGACAAGCC 59124752 CACCTTATATTATCTCAGT 1 CACCTTATATTATCTCAGT 59124771 CACCTTATATTATCTCAGT 1 CACCTTATATTATCTCAGT 59124790 TTCTCCCCGT Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 19 19 1.00 ACGTcount: A:0.26, C:0.26, G:0.05, T:0.42 Consensus pattern (19 bp): CACCTTATATTATCTCAGT Found at i:59137993 original size:44 final size:43 Alignment explanation
Indices: 59137925--59138126 Score: 141 Period size: 42 Copynumber: 4.8 Consensus size: 43 59137915 CCAATATGTG * 59137925 ATTTCGTGTAAGACCACGTCTGGGACGTTGGCATTGATTTGAT 1 ATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGAT * * * * * 59137968 ATTTACGTGTAATATCACGTTTGGGACGTTGGCATCGATTTAAG 1 ATTT-CGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGAT * * * * * * 59138012 A-TACGTGTAAGACCATGTCTGGGACATCGACATCG-TAT-AT 1 ATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGAT * * * 59138052 GATTTCATGTAAGACC-CTATTTGGGACAG-TGGCATCGA-TTG-- 1 -ATTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATTTGAT * * * * 59138093 ATTACATGTAAGACCACGTTTGGGACATTGGCAT 1 ATTTCGTGTAAGACCACGTCTGGGACGTTGGCAT 59138127 TGTACGAGCT Statistics Matches: 122, Mismatches: 28, Indels: 21 0.71 0.16 0.12 Matches are distributed among these distances: 40 29 0.24 41 4 0.03 42 50 0.41 43 5 0.04 44 34 0.28 ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32 Consensus pattern (43 bp): ATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGAT Found at i:59138035 original size:42 final size:44 Alignment explanation
Indices: 59137929--59138036 Score: 139 Period size: 44 Copynumber: 2.5 Consensus size: 44 59137919 TATGTGATTT * ** 59137929 CGTGTAAGACCACGTCTGGGACGTTGGCATTGATTTGATATTTA 1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGATAGATA * * * 59137973 CGTGTAATATCACGTTTGGGACGTTGGCATCGATTT-A-AGATA 1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGATAGATA * 59138015 CGTGTAAGACCATGTCTGGGAC 1 CGTGTAAGACCACGTCTGGGAC 59138037 ATCGACATCG Statistics Matches: 54, Mismatches: 10, Indels: 2 0.82 0.15 0.03 Matches are distributed among these distances: 42 21 0.39 43 1 0.02 44 32 0.59 ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31 Consensus pattern (44 bp): CGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGATAGATA Found at i:59138063 original size:42 final size:39 Alignment explanation
Indices: 59138017--59138120 Score: 118 Period size: 40 Copynumber: 2.6 Consensus size: 39 59138007 TTAAGATACG * * 59138017 TGTAAGACCATGTCTGGGACATCGACATCGTATATGATTTCA 1 TGTAAGACCATGTTTGGGACAT-GACATCG-AT-TGATTACA * * * 59138059 TGTAAGACCCTATTTGGGACAGTGGCATCGATTGATTACA 1 TGTAAGACCATGTTTGGGACA-TGACATCGATTGATTACA * 59138099 TGTAAGACCACGTTTGGGACAT 1 TGTAAGACCATGTTTGGGACAT 59138121 TGGCATTGTA Statistics Matches: 53, Mismatches: 8, Indels: 5 0.80 0.12 0.08 Matches are distributed among these distances: 39 1 0.02 40 25 0.47 41 2 0.04 42 24 0.45 43 1 0.02 ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30 Consensus pattern (39 bp): TGTAAGACCATGTTTGGGACATGACATCGATTGATTACA Found at i:59146728 original size:40 final size:40 Alignment explanation
Indices: 59146664--59146866 Score: 198 Period size: 40 Copynumber: 5.1 Consensus size: 40 59146654 CTAAGATCCA * * * 59146664 AAGGCATTTGTGCGAGTTG-CTATATCCGAGCTATGTCCCG 1 AAGGCATTTATGCGAG-CGACTATATCCGAGCTAAGTCCCG * * 59146704 AAGGCATTTATGCTAGCGATTATATCCGAGCTAAGTCCCG 1 AAGGCATTTATGCGAGCGACTATATCCGAGCTAAGTCCCG * ** * 59146744 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG 1 AAGGCATTTATGCGAGCGACTATATCCGAGCTAAGTCCCG * ** * * * 59146784 AAGGCATTTGTGCGAGTTACTGTAACCGGGCTAAGTCCCG 1 AAGGCATTTATGCGAGCGACTATATCCGAGCTAAGTCCCG * * 59146824 AAGGCATTTGA-GCGAG-TAGCTATATCCG-GCTAAATCCCG 1 AAGGCATTT-ATGCGAGCGA-CTATATCCGAGCTAAGTCCCG 59146863 AAGG 1 AAGG 59146867 TACTTGGTTT Statistics Matches: 143, Mismatches: 17, Indels: 7 0.86 0.10 0.04 Matches are distributed among these distances: 39 17 0.12 40 126 0.88 ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26 Consensus pattern (40 bp): AAGGCATTTATGCGAGCGACTATATCCGAGCTAAGTCCCG Found at i:59146787 original size:80 final size:80 Alignment explanation
Indices: 59146664--59146866 Score: 266 Period size: 80 Copynumber: 2.5 Consensus size: 80 59146654 CTAAGATCCA * * * * * * 59146664 AAGGCATTTGTGCGAGTTGCTATATCCGAGCTATGTCCCGAAGGCATTTATGCTAGCGATTATAT 1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGCGACTATAA 59146729 CCGAGCTAAGTCCCG 66 CCGAGCTAAGTCCCG * ** * 59146744 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTGTAA 1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGCGACTATAA * 59146809 CCGGGCTAAGTCCCG 66 CCGAGCTAAGTCCCG * * 59146824 AAGGCATTTGAGCGAG-TAGCTATATCC-GGCTAAATCCCGAAGG 1 AAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG 59146867 TACTTGGTTT Statistics Matches: 109, Mismatches: 13, Indels: 3 0.87 0.10 0.02 Matches are distributed among these distances: 79 17 0.16 80 92 0.84 ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26 Consensus pattern (80 bp): AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGCGACTATAA CCGAGCTAAGTCCCG Found at i:59154732 original size:40 final size:40 Alignment explanation
Indices: 59154665--59154870 Score: 290 Period size: 40 Copynumber: 5.2 Consensus size: 40 59154655 GGACTAAGAT * * 59154665 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTC 1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC * * ** * * 59154705 CCGAAGGCATTTATGCTAGCGATTATATCCGGGCTATGTC 1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC 59154745 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC 1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC * 59154785 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTC 1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC * * 59154825 CCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGCTAAATC 1 CCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTC 59154864 CCGAAGG 1 CCGAAGG 59154871 TACTTGGTTT Statistics Matches: 149, Mismatches: 16, Indels: 3 0.89 0.10 0.02 Matches are distributed among these distances: 39 17 0.11 40 132 0.89 ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26 Consensus pattern (40 bp): CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC Found at i:59160022 original size:40 final size:38 Alignment explanation
Indices: 59159973--59160080 Score: 128 Period size: 40 Copynumber: 2.7 Consensus size: 38 59159963 ATCACGATTT * 59159973 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC 1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA * 59160013 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA 1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA * 59160053 GCACAATTGCCTTCGGGTCTTAACCCGG 1 GCACAA-TGCCTTCGGGTCTTAGCCCGG 59160081 TTATAATTTC Statistics Matches: 61, Mismatches: 4, Indels: 6 0.86 0.06 0.08 Matches are distributed among these distances: 38 1 0.02 39 4 0.07 40 56 0.92 ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23 Consensus pattern (38 bp): GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA Found at i:59160040 original size:80 final size:80 Alignment explanation
Indices: 59159932--59160080 Score: 183 Period size: 80 Copynumber: 1.9 Consensus size: 80 59159922 TATGGTAACC * * * * 59159932 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG 1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA 59159996 CCCGGATAGAATGACT 65 CCCGGATAGAATGACT * * * * * * * 59160012 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC 59160077 CCGG 66 CCGG 59160081 TTATAATTTC Statistics Matches: 57, Mismatches: 11, Indels: 2 0.81 0.16 0.03 Matches are distributed among these distances: 79 1 0.02 80 56 0.98 ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22 Consensus pattern (80 bp): CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC CCGGATAGAATGACT Found at i:59164548 original size:40 final size:39 Alignment explanation
Indices: 59164503--59164710 Score: 218 Period size: 40 Copynumber: 5.2 Consensus size: 39 59164493 CGGAATACAA * 59164503 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC * * * 59164543 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC 1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC * * * 59164583 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC * ** * * 59164623 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC ** * * * 59164663 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC 1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC 59164703 CCGGATAT 1 CCGGATAT 59164711 CATTCAATTG Statistics Matches: 142, Mismatches: 25, Indels: 2 0.84 0.15 0.01 Matches are distributed among these distances: 39 1 0.01 40 141 0.99 ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26 Consensus pattern (39 bp): CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC Found at i:59164643 original size:80 final size:81 Alignment explanation
Indices: 59164503--59164708 Score: 247 Period size: 80 Copynumber: 2.6 Consensus size: 81 59164493 CGGAATACAA * * * 59164503 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT 1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT * 59164567 GCCTTCGGGTATTAGC 66 GCCTTCGGGTATTAAC * * * 59164583 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT 1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA * 59164646 TGCCTTCGGGTCTTAAC 65 TGCCTTCGGGTATTAAC ** * ** * * 59164663 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT 1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT 59164709 ATCATTCAAT Statistics Matches: 108, Mismatches: 16, Indels: 4 0.84 0.12 0.03 Matches are distributed among these distances: 80 104 0.96 81 1 0.01 82 3 0.03 ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26 Consensus pattern (81 bp): CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT GCCTTCGGGTATTAAC Found at i:59167348 original size:54 final size:54 Alignment explanation
Indices: 59167283--59167410 Score: 152 Period size: 54 Copynumber: 2.4 Consensus size: 54 59167273 TTAGTTTACC * * 59167283 AAATTACCAAAATA-CCCTCGATTAGAAAAATTACCAAAATACC-CTCGATTAGCA 1 AAATTATCAAAATACCCCT-GATTAGAAAAATTACCAAAATACCTCT-AATTAGCA * * * * * 59167337 AAATTATCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCTCTAATTTGTA 1 AAATTATCAAAATACCCCTGATTAGAAAAATTACCAAAATACCTCTAATTAGCA * 59167391 AAATTATCGAAATACCCCTG 1 AAATTATCAAAATACCCCTG 59167411 TAAGGTAGAA Statistics Matches: 64, Mismatches: 8, Indels: 4 0.84 0.11 0.05 Matches are distributed among these distances: 54 58 0.91 55 6 0.09 ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27 Consensus pattern (54 bp): AAATTATCAAAATACCCCTGATTAGAAAAATTACCAAAATACCTCTAATTAGCA Found at i:59167388 original size:27 final size:27 Alignment explanation
Indices: 59167283--59167407 Score: 137 Period size: 27 Copynumber: 4.6 Consensus size: 27 59167273 TTAGTTTACC * 59167283 AAATTACCAAAATACCCTCGATTAGAA 1 AAATTACCAAAATACCCTCGATTAGTA * 59167310 AAATTACCAAAATACCCTCGATTAGCA 1 AAATTACCAAAATACCCTCGATTAGTA * * * 59167337 AAATTATCAAAATACCC-CTGGTTTGTA 1 AAATTACCAAAATACCCTC-GATTAGTA * * 59167364 AAATTACCAAAATA-CCTCTAATTTGTA 1 AAATTACCAAAATACCCTC-GATTAGTA * * 59167391 AAATTATCGAAATACCC 1 AAATTACCAAAATACCC 59167408 CTGTAAGGTA Statistics Matches: 85, Mismatches: 10, Indels: 5 0.85 0.10 0.05 Matches are distributed among these distances: 26 3 0.04 27 80 0.94 28 2 0.02 ACGTcount: A:0.44, C:0.22, G:0.07, T:0.27 Consensus pattern (27 bp): AAATTACCAAAATACCCTCGATTAGTA Found at i:59167422 original size:27 final size:27 Alignment explanation
Indices: 59167392--59167596 Score: 234 Period size: 27 Copynumber: 7.6 Consensus size: 27 59167382 TAATTTGTAA * 59167392 AATTATCGAAATACCCCTGTAAGGTAG 1 AATTATCGAAATACCCCTGTAGGGTAG * * 59167419 AATTATCGAAATACCACTGTAGGGTGG 1 AATTATCGAAATACCCCTGTAGGGTAG * * * * 59167446 AATTA-CTAAAATACTCCTGTAAGGTAA 1 AATTATC-GAAATACCCCTGTAGGGTAG 59167473 AATTATCGAAATACCCCTGTAGGGTAG 1 AATTATCGAAATACCCCTGTAGGGTAG * * * 59167500 AATTATTGAAATACCCCTGTTGGATAG 1 AATTATCGAAATACCCCTGTAGGGTAG * * * 59167527 AATTACCGAAATACCCTTGTATGGTAG 1 AATTATCGAAATACCCCTGTAGGGTAG * 59167554 AAATA-CTGAAATACCCCTGTAGGGTAG 1 AATTATC-GAAATACCCCTGTAGGGTAG * * 59167581 AATTACCGAGATACCC 1 AATTATCGAAATACCC 59167597 TCGTGGGGTA Statistics Matches: 147, Mismatches: 27, Indels: 8 0.81 0.15 0.04 Matches are distributed among these distances: 26 2 0.01 27 143 0.97 28 2 0.01 ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27 Consensus pattern (27 bp): AATTATCGAAATACCCCTGTAGGGTAG Found at i:59167423 original size:54 final size:54 Alignment explanation
Indices: 59167309--59167433 Score: 137 Period size: 54 Copynumber: 2.3 Consensus size: 54 59167299 CTCGATTAGA * ** 59167309 AAAATTACCAAAATACCCTCGATTAGCAAAATTATCAAAATACCCCTGGTTTGT 1 AAAATTACCAAAATACCCTCAATTAGCAAAATTATCAAAATACCCCTGGTAGGT * * * 59167363 AAAATTACCAAAATA-CCTCTAATTTGTAAAATTATCGAAATACCCCT-GTAAGGT 1 AAAATTACCAAAATACCCTC-AATTAGCAAAATTATCAAAATACCCCTGGT-AGGT * * * 59167417 AGAATTATCGAAATACC 1 AAAATTACCAAAATACC 59167434 ACTGTAGGGT Statistics Matches: 59, Mismatches: 9, Indels: 5 0.81 0.12 0.07 Matches are distributed among these distances: 53 6 0.10 54 52 0.88 55 1 0.02 ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28 Consensus pattern (54 bp): AAAATTACCAAAATACCCTCAATTAGCAAAATTATCAAAATACCCCTGGTAGGT Found at i:59167423 original size:81 final size:80 Alignment explanation
Indices: 59167338--59167596 Score: 267 Period size: 81 Copynumber: 3.2 Consensus size: 80 59167328 CGATTAGCAA * * * * 59167338 AATTATCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCTCTAATTTGTAAAATTATCGAAA 1 AATTATCGAAATACCCCT-GTTGGTAGAATTACCAAAATACCTCTAATTGGTAAAATTATCGAAA * 59167403 TACCCCTGTAAGGTAG 65 TACCCCTGTAGGGTAG * * * * * 59167419 AATTATCGAAATACCACTGTAGGGTGGAATTACTAAAATACTCCTGTAA--GGTAAAATTATCGA 1 AATTATCGAAATACCCCTGT-TGGTAGAATTACCAAAATA--CCTCTAATTGGTAAAATTATCGA 59167482 AATACCCCTGTAGGGTAG 63 AATACCCCTGTAGGGTAG * * ** 59167500 AATTATTGAAATACCCCTGTTGGATAGAATTACCGAAATACC-CTTGTATGGTAGAAA-TA-CTG 1 AATTATCGAAATACCCCTGTTGG-TAGAATTACCAAAATACCTCTAAT-TGGTA-AAATTATC-G 59167562 AAATACCCCTGTAGGGTAG 62 AAATACCCCTGTAGGGTAG * * 59167581 AATTACCGAGATACCC 1 AATTATCGAAATACCC 59167597 TCGTGGGGTA Statistics Matches: 147, Mismatches: 22, Indels: 18 0.79 0.12 0.10 Matches are distributed among these distances: 78 1 0.01 79 2 0.01 80 5 0.03 81 130 0.88 82 3 0.02 83 6 0.04 ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28 Consensus pattern (80 bp): AATTATCGAAATACCCCTGTTGGTAGAATTACCAAAATACCTCTAATTGGTAAAATTATCGAAAT ACCCCTGTAGGGTAG Found at i:59167612 original size:81 final size:81 Alignment explanation
Indices: 59167388--59167615 Score: 268 Period size: 81 Copynumber: 2.8 Consensus size: 81 59167378 CCTCTAATTT * * 59167388 GTAAAATTATCGAAATACCCCTGTAAGGTAGAATTATCGAAATACCACT-GTAGGGTGGAATTAC 1 GTAAAATTATCGAAATACCCCTGTAGGGTAGAATTATCGAAATACC-CTCGTAGGGTAGAATTAC * 59167452 TAAAATACTCCTGTAAG 65 CAAAATACTCCTGTAAG * * * 59167469 GTAAAATTATCGAAATACCCCTGTAGGGTAGAATTATTGAAATACCC-CTGTTGGATAGAATTAC 1 GTAAAATTATCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTC-GTAGGGTAGAATTAC * * 59167533 CGAAATAC-CCTTGTATG 65 CAAAATACTCC-TGTAAG * * * * 59167550 GTAGAAA-TA-CTGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTCGTGGGGTAAAATTA 1 GTA-AAATTATC-GAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTCGTAGGGTAGAATTA 59167613 CCA 64 CCA 59167616 TTTTGCCCCT Statistics Matches: 126, Mismatches: 15, Indels: 12 0.82 0.10 0.08 Matches are distributed among these distances: 80 4 0.03 81 118 0.94 82 4 0.03 ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27 Consensus pattern (81 bp): GTAAAATTATCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTCGTAGGGTAGAATTACC AAAATACTCCTGTAAG Found at i:59167974 original size:22 final size:22 Alignment explanation
Indices: 59167942--59168000 Score: 64 Period size: 22 Copynumber: 2.7 Consensus size: 22 59167932 CCCGTTATCG * * 59167942 ATGGCTCTGTGCCAACCTAAAT 1 ATGGCTTTGTGCCAACATAAAT * * * 59167964 ATGGCTTTGTGCCATCATGACT 1 ATGGCTTTGTGCCAACATAAAT * 59167986 ATGGCTTCGTGCCAA 1 ATGGCTTTGTGCCAA 59168001 GCGTATTTAC Statistics Matches: 30, Mismatches: 7, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 22 30 1.00 ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31 Consensus pattern (22 bp): ATGGCTTTGTGCCAACATAAAT Found at i:59168211 original size:28 final size:28 Alignment explanation
Indices: 59168179--59168235 Score: 71 Period size: 28 Copynumber: 2.0 Consensus size: 28 59168169 CATTATCTGA * * 59168179 TTCTGATGGCTCTGTCAC-AATATTCTAT 1 TTCTGATGGCTATGCCACAAATA-TCTAT * 59168207 TTCTGGTGGCTATGCCACAAATATCTAT 1 TTCTGATGGCTATGCCACAAATATCTAT 59168235 T 1 T 59168236 CTGGTGTGAC Statistics Matches: 25, Mismatches: 3, Indels: 2 0.83 0.10 0.07 Matches are distributed among these distances: 28 21 0.84 29 4 0.16 ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40 Consensus pattern (28 bp): TTCTGATGGCTATGCCACAAATATCTAT Found at i:59169994 original size:40 final size:40 Alignment explanation
Indices: 59169928--59170077 Score: 155 Period size: 40 Copynumber: 3.8 Consensus size: 40 59169918 AAATTGAATG * * * 59169928 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT * * *** 59169967 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT * * 59170007 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT 1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT * 59170047 CTATCCGGGCTAAGACCCGAAGGC-ATTGTGC 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC 59170078 ACGTGGTTAT Statistics Matches: 92, Mismatches: 16, Indels: 6 0.81 0.14 0.05 Matches are distributed among these distances: 39 20 0.22 40 72 0.78 ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22 Consensus pattern (40 bp): ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT Found at i:59178023 original size:40 final size:40 Alignment explanation
Indices: 59177957--59178100 Score: 141 Period size: 40 Copynumber: 3.6 Consensus size: 40 59177947 AAATTGAATG * * * * 59177957 ATATCC-GGCTAAGCCCCGAAGACAATTATGCTGGAAATT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT * * *** 59177996 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT * * 59178036 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT 1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT * 59178076 CTATCCGGGCTAAGACCCGAAGGCA 1 ATATCCGGGCTAAGACCCGAAGGCA 59178101 TTCGTGCACG Statistics Matches: 84, Mismatches: 17, Indels: 6 0.79 0.16 0.06 Matches are distributed among these distances: 39 9 0.11 40 75 0.89 ACGTcount: A:0.28, C:0.25, G:0.26, T:0.21 Consensus pattern (40 bp): ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT Found at i:59178121 original size:40 final size:40 Alignment explanation
Indices: 59177994--59178123 Score: 165 Period size: 40 Copynumber: 3.2 Consensus size: 40 59177984 ATGCTGGAAA * * 59177994 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG 1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG * * ** 59178034 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA 1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG * 59178074 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG 1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG 59178114 TTATATCCGG 1 TTATATCCGG 59178124 TTGTATTCCG Statistics Matches: 76, Mismatches: 12, Indels: 4 0.83 0.13 0.04 Matches are distributed among these distances: 39 4 0.05 40 72 0.95 ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24 Consensus pattern (40 bp): TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG Found at i:59179517 original size:27 final size:27 Alignment explanation
Indices: 59179487--59179545 Score: 93 Period size: 27 Copynumber: 2.2 Consensus size: 27 59179477 GGGGTGTTAC * 59179487 ATCTGGTGGCTCTGCCACAATATCTGT 1 ATCTGGTGACTCTGCCACAATATCTGT * 59179514 ATCTGGTGACTCTGTCACAATATCTGT 1 ATCTGGTGACTCTGCCACAATATCTGT 59179541 -TCTGG 1 ATCTGG 59179546 CAGCCATGCT Statistics Matches: 30, Mismatches: 2, Indels: 1 0.91 0.06 0.03 Matches are distributed among these distances: 26 5 0.17 27 25 0.83 ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36 Consensus pattern (27 bp): ATCTGGTGACTCTGCCACAATATCTGT Found at i:59179672 original size:6 final size:6 Alignment explanation
Indices: 59179663--59179787 Score: 69 Period size: 6 Copynumber: 20.3 Consensus size: 6 59179653 TTGCATTCAC * * * * 59179663 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTA ATTCTG ATTCTG -TCACATA 1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT-TC-TG * * * * 59179713 ATTCTG ATTCTG ATTTTG ATTATG ATTCTG -TCACCTG ATTCTG ATTCTA 1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG * * 59179762 ATTCTC ATTTTG ATTCT- AGTTCTG AT 1 ATTCTG ATTCTG ATTCTG A-TTCTG AT 59179788 AATGTTTCTT Statistics Matches: 90, Mismatches: 18, Indels: 22 0.69 0.14 0.17 Matches are distributed among these distances: 5 5 0.06 6 73 0.81 7 9 0.10 8 3 0.03 ACGTcount: A:0.22, C:0.18, G:0.13, T:0.48 Consensus pattern (6 bp): ATTCTG Found at i:59179722 original size:25 final size:25 Alignment explanation
Indices: 59179663--59179727 Score: 85 Period size: 25 Copynumber: 2.6 Consensus size: 25 59179653 TTGCATTCAC * * * 59179663 ATTCTGATTCTGATTCTGTTACCTG 1 ATTCTGATTCTGATTCTGTCACATA * * 59179688 ATACTAATTCTGATTCTGTCACATA 1 ATTCTGATTCTGATTCTGTCACATA 59179713 ATTCTGATTCTGATT 1 ATTCTGATTCTGATT 59179728 TTGATTATGA Statistics Matches: 33, Mismatches: 7, Indels: 0 0.82 0.17 0.00 Matches are distributed among these distances: 25 33 1.00 ACGTcount: A:0.23, C:0.18, G:0.12, T:0.46 Consensus pattern (25 bp): ATTCTGATTCTGATTCTGTCACATA Found at i:59179726 original size:37 final size:37 Alignment explanation
Indices: 59179685--59179778 Score: 107 Period size: 37 Copynumber: 2.5 Consensus size: 37 59179675 ATTCTGTTAC * * 59179685 CTGATACTAATTCTGATTCTGTCACATAATTCTGATT 1 CTGATTCTAATTATGATTCTGTCACATAATTCTGATT * * * * 59179722 CTGATTTTGATTATGATTCTGTCACCTGATTCTGATT 1 CTGATTCTAATTATGATTCTGTCACATAATTCTGATT * * * 59179759 CTAATTCTCATTTTGATTCT 1 CTGATTCTAATTATGATTCT 59179779 AGTTCTGATA Statistics Matches: 47, Mismatches: 10, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 37 47 1.00 ACGTcount: A:0.22, C:0.18, G:0.12, T:0.48 Consensus pattern (37 bp): CTGATTCTAATTATGATTCTGTCACATAATTCTGATT Found at i:59179757 original size:19 final size:19 Alignment explanation
Indices: 59179694--59179760 Score: 66 Period size: 19 Copynumber: 3.6 Consensus size: 19 59179684 CCTGATACTA * 59179694 ATTCTGATTCTGTCACATA 1 ATTCTGATTCTGTCACATG ** 59179713 ATTCTGATTCTG--ATTTTG 1 ATTCTGATTCTGTCA-CATG * * 59179731 ATTATGATTCTGTCACCTG 1 ATTCTGATTCTGTCACATG 59179750 ATTCTGATTCT 1 ATTCTGATTCT 59179761 AATTCTCATT Statistics Matches: 38, Mismatches: 7, Indels: 6 0.75 0.14 0.12 Matches are distributed among these distances: 17 1 0.03 18 12 0.32 19 24 0.63 20 1 0.03 ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48 Consensus pattern (19 bp): ATTCTGATTCTGTCACATG Found at i:59193990 original size:20 final size:21 Alignment explanation
Indices: 59193965--59194003 Score: 62 Period size: 20 Copynumber: 1.9 Consensus size: 21 59193955 TTCAAACTTG * 59193965 TTTTATTTTTATTT-TTTTAC 1 TTTTATTTCTATTTATTTTAC 59193985 TTTTATTTCTATTTATTTT 1 TTTTATTTCTATTTATTTT 59194004 TGAAGACTCA Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 20 13 0.76 21 4 0.24 ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79 Consensus pattern (21 bp): TTTTATTTCTATTTATTTTAC Found at i:59199421 original size:47 final size:47 Alignment explanation
Indices: 59199347--59199439 Score: 150 Period size: 47 Copynumber: 2.0 Consensus size: 47 59199337 GGGTAAGAAG * * 59199347 CCTTATTTAGTATAGGAAAATTTTTCCCAGTTCTGTTTATATATTTC 1 CCTTATTTAGCATAGGAAAATTCTTCCCAGTTCTGTTTATATATTTC * * 59199394 CCTTATTTAGCATAGGAGAATTCTTCCCAGTTTTGTTTATATATTT 1 CCTTATTTAGCATAGGAAAATTCTTCCCAGTTCTGTTTATATATTT 59199440 TCTCAACTGC Statistics Matches: 42, Mismatches: 4, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 47 42 1.00 ACGTcount: A:0.25, C:0.15, G:0.12, T:0.48 Consensus pattern (47 bp): CCTTATTTAGCATAGGAAAATTCTTCCCAGTTCTGTTTATATATTTC Found at i:59203474 original size:2 final size:2 Alignment explanation
Indices: 59203467--59203496 Score: 60 Period size: 2 Copynumber: 15.0 Consensus size: 2 59203457 TGGTTGAGAC 59203467 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 59203497 GCACTATGTT Statistics Matches: 28, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 28 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:59211487 original size:21 final size:21 Alignment explanation
Indices: 59211440--59211487 Score: 60 Period size: 21 Copynumber: 2.3 Consensus size: 21 59211430 ATATGACATA * * * 59211440 ATATGCACATGATATGTTATG 1 ATATACACATGATATGCTAAG * 59211461 AGATACACATGATATGCTAAG 1 ATATACACATGATATGCTAAG 59211482 ATATAC 1 ATATAC 59211488 TTATTATATG Statistics Matches: 22, Mismatches: 5, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 21 22 1.00 ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31 Consensus pattern (21 bp): ATATACACATGATATGCTAAG Found at i:59211590 original size:24 final size:25 Alignment explanation
Indices: 59211533--59211590 Score: 68 Period size: 25 Copynumber: 2.4 Consensus size: 25 59211523 AAGAAGTGCG 59211533 AAAAG-GGCTTTGCCCCAGTTCACC 1 AAAAGAGGCTTTGCCCCAGTTCACC ** 59211557 AAAA-AGGGCTTTGCCCCAGTT-ATT 1 AAAAGA-GGCTTTGCCCCAGTTCACC 59211581 AAAAGAGGCT 1 AAAAGAGGCT 59211591 AGTCCTCCAG Statistics Matches: 29, Mismatches: 2, Indels: 6 0.78 0.05 0.16 Matches are distributed among these distances: 24 13 0.45 25 16 0.55 ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22 Consensus pattern (25 bp): AAAAGAGGCTTTGCCCCAGTTCACC Found at i:59219595 original size:10 final size:11 Alignment explanation
Indices: 59219577--59219651 Score: 57 Period size: 10 Copynumber: 7.1 Consensus size: 11 59219567 ATATTGTTAT 59219577 ACATGATATG- 1 ACATGATATGC * 59219587 ACATAATATGC 1 ACATGATATGC 59219598 ACATGATATG- 1 ACATGATATGC ** * 59219608 TTATGAGATGC 1 ACATGATATGC 59219619 ACATGATATGC 1 ACATGATATGC * * 59219630 -TATGATATAC 1 ACATGATATGC * * 59219640 TCATTATATGC 1 ACATGATATGC 59219651 A 1 A 59219652 TGGGTTGGGT Statistics Matches: 48, Mismatches: 14, Indels: 5 0.72 0.21 0.07 Matches are distributed among these distances: 10 24 0.50 11 24 0.50 ACGTcount: A:0.37, C:0.13, G:0.16, T:0.33 Consensus pattern (11 bp): ACATGATATGC Found at i:59219633 original size:21 final size:21 Alignment explanation
Indices: 59219577--59219634 Score: 73 Period size: 21 Copynumber: 2.8 Consensus size: 21 59219567 ATATTGTTAT * * 59219577 ACATGATATGAC-ATAATATGC 1 ACATGATATG-CTATGAGATGC * 59219598 ACATGATATGTTATGAGATGC 1 ACATGATATGCTATGAGATGC 59219619 ACATGATATGCTATGA 1 ACATGATATGCTATGA 59219635 TATACTCATT Statistics Matches: 32, Mismatches: 4, Indels: 2 0.84 0.11 0.05 Matches are distributed among these distances: 21 32 1.00 ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31 Consensus pattern (21 bp): ACATGATATGCTATGAGATGC Found at i:59221980 original size:39 final size:38 Alignment explanation
Indices: 59221937--59222020 Score: 114 Period size: 39 Copynumber: 2.2 Consensus size: 38 59221927 TGAAAACAAG 59221937 TATTAATGATGTTCAAACTATGACATAATCAAAGACCCA 1 TATTAATGATGTTCAAACTATGACATAATCAAA-ACCCA * * * * * 59221976 TATTAATGATGTTTAGATTATGACATAATTAAAACTCA 1 TATTAATGATGTTCAAACTATGACATAATCAAAACCCA 59222014 TATTAAT 1 TATTAAT 59222021 TGTAACACCC Statistics Matches: 40, Mismatches: 5, Indels: 1 0.87 0.11 0.02 Matches are distributed among these distances: 38 11 0.28 39 29 0.73 ACGTcount: A:0.43, C:0.12, G:0.10, T:0.36 Consensus pattern (38 bp): TATTAATGATGTTCAAACTATGACATAATCAAAACCCA Found at i:59223692 original size:49 final size:49 Alignment explanation
Indices: 59223621--59223748 Score: 168 Period size: 49 Copynumber: 2.6 Consensus size: 49 59223611 ACATCAAAGT * * * 59223621 CGATGCCATGTCTCAGGCAGGTCTTACACTAACTTTCATATATCGAG-GC 1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATATATCG-GTGC * * * * * 59223670 CGATGTCGTGTCCCAGACAGGTCTTACACTAGCTCTCATCTATCGGTGT 1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATATATCGGTGC 59223719 CGATGCCATGTCCCAGACAGGTCTTACACT 1 CGATGCCATGTCCCAGACAGGTCTTACACT 59223749 GACACACAAC Statistics Matches: 68, Mismatches: 10, Indels: 2 0.85 0.12 0.03 Matches are distributed among these distances: 48 1 0.01 49 67 0.99 ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28 Consensus pattern (49 bp): CGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATATATCGGTGC Found at i:59227086 original size:14 final size:16 Alignment explanation
Indices: 59227057--59227088 Score: 50 Period size: 14 Copynumber: 2.1 Consensus size: 16 59227047 CTCTTTTTGT 59227057 AGTAGTCTAGTCATCG 1 AGTAGTCTAGTCATCG 59227073 AGTAG-CTA-TCATCG 1 AGTAGTCTAGTCATCG 59227087 AG 1 AG 59227089 AATCCTTTAA Statistics Matches: 16, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 14 8 0.50 15 3 0.19 16 5 0.31 ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28 Consensus pattern (16 bp): AGTAGTCTAGTCATCG Found at i:59234616 original size:37 final size:37 Alignment explanation
Indices: 59234557--59234665 Score: 191 Period size: 37 Copynumber: 2.9 Consensus size: 37 59234547 AGCTCAGACG * * 59234557 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA 1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA 59234594 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA 1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA * 59234631 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA 1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA 59234666 ATATATTTCC Statistics Matches: 69, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 37 69 1.00 ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23 Consensus pattern (37 bp): AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA Found at i:59234950 original size:50 final size:50 Alignment explanation
Indices: 59234815--59234961 Score: 235 Period size: 50 Copynumber: 3.0 Consensus size: 50 59234805 CATCGCCTAC * * 59234815 ATATTTCACACT-AGCCATTCGGCTTTACCACATATACATATCTCATATAT 1 ATATTTCACATTGA-CCATTCGGCTTTACCACATATGCATATCTCATATAT * 59234865 ATATTTCATATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT 1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT * 59234915 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATGT-TCATAT 1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATAT 59234962 TCACCACATT Statistics Matches: 91, Mismatches: 5, Indels: 3 0.92 0.05 0.03 Matches are distributed among these distances: 49 6 0.07 50 84 0.92 51 1 0.01 ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38 Consensus pattern (50 bp): ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT Found at i:59235011 original size:47 final size:47 Alignment explanation
Indices: 59234920--59235064 Score: 222 Period size: 47 Copynumber: 3.1 Consensus size: 47 59234910 TATATATATT * * * 59234920 TCACATTGACCATTCGGCTTTA-C-CACATATGCATGTTCATATTCA 1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA * * 59234965 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA 1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA * 59235012 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA 1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA 59235059 TCACAT 1 TCACAT 59235065 AAAATCCTAA Statistics Matches: 90, Mismatches: 8, Indels: 2 0.90 0.08 0.02 Matches are distributed among these distances: 45 19 0.21 46 1 0.01 47 70 0.78 ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32 Consensus pattern (47 bp): TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA Found at i:59238671 original size:48 final size:47 Alignment explanation
Indices: 59238598--59238765 Score: 169 Period size: 48 Copynumber: 3.6 Consensus size: 47 59238588 AGCTGACACT * * 59238598 ATGTCCCAAACAGGTCTTACACTAGCTTGTATATCTCGAGGTCGGTGC 1 ATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCGAGG-CGATGC * * * * ** * 59238646 ACGTCCCAGACATGTCGTACACTAGC-TCTA-ATCTTAATGCCGATGC 1 ATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCGA-GGCGATGC * * * * 59238692 ATATCCCAAACATGTCTTACACTGGCTTGCATCTCTCGAGGCTGATGC 1 ATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCGAGGC-GATGC * 59238740 ATGTCCCAGACATGTCTTACACTAGC 1 ATGTCCCAAACATGTCTTACACTAGC 59238766 ACACATATCA Statistics Matches: 93, Mismatches: 23, Indels: 8 0.75 0.19 0.06 Matches are distributed among these distances: 46 31 0.33 47 8 0.09 48 54 0.58 ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28 Consensus pattern (47 bp): ATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCGAGGCGATGC Found at i:59242968 original size:29 final size:28 Alignment explanation
Indices: 59242934--59243036 Score: 116 Period size: 29 Copynumber: 3.6 Consensus size: 28 59242924 TACTCAATCA * 59242934 CGCACACTTAGTGCCATATGATTCAAGCC 1 CGCACACTTAGTGCCATAT-ATTCAAGCT * * * 59242963 CGCACACATAGTGCCATATAGTCCAAACT 1 CGCACACTTAGTGCCATATA-TTCAAGCT * * 59242992 CGCACACTTAGTGCCGTACATTACAAGCT 1 CGCACACTTAGTGCCATATATT-CAAGCT * 59243021 CGCACACTCAGTGCCA 1 CGCACACTTAGTGCCA 59243037 ATCTCGTCAC Statistics Matches: 61, Mismatches: 11, Indels: 4 0.80 0.14 0.05 Matches are distributed among these distances: 28 2 0.03 29 59 0.97 ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21 Consensus pattern (28 bp): CGCACACTTAGTGCCATATATTCAAGCT Found at i:59250981 original size:29 final size:28 Alignment explanation
Indices: 59250947--59251049 Score: 116 Period size: 29 Copynumber: 3.6 Consensus size: 28 59250937 TACTCAATCA * 59250947 CGCACACTTAGTGCCATATGATTCAAGCC 1 CGCACACTTAGTGCCATAT-ATTCAAGCT * * * 59250976 CGCACACATAGTGCCATATAGTCCAAACT 1 CGCACACTTAGTGCCATATA-TTCAAGCT * * 59251005 CGCACACTTAGTGCCGTACATTACAAGCT 1 CGCACACTTAGTGCCATATATT-CAAGCT * 59251034 CGCACACTCAGTGCCA 1 CGCACACTTAGTGCCA 59251050 ATCTCGTCAC Statistics Matches: 61, Mismatches: 11, Indels: 4 0.80 0.14 0.05 Matches are distributed among these distances: 28 2 0.03 29 59 0.97 ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21 Consensus pattern (28 bp): CGCACACTTAGTGCCATATATTCAAGCT Found at i:59255011 original size:29 final size:29 Alignment explanation
Indices: 59254978--59255033 Score: 78 Period size: 29 Copynumber: 1.9 Consensus size: 29 59254968 ATAATCATAT 59254978 TTTTA-AACAATAATTTTAATTTGATAAGC 1 TTTTATAAC-ATAATTTTAATTTGATAAGC * * 59255007 TTTTATAACATATTTTTAATTTTATAA 1 TTTTATAACATAATTTTAATTTGATAA 59255034 ATATTTTGCC Statistics Matches: 24, Mismatches: 2, Indels: 2 0.86 0.07 0.07 Matches are distributed among these distances: 29 21 0.88 30 3 0.12 ACGTcount: A:0.39, C:0.05, G:0.04, T:0.52 Consensus pattern (29 bp): TTTTATAACATAATTTTAATTTGATAAGC Found at i:59255298 original size:25 final size:25 Alignment explanation
Indices: 59255269--59255316 Score: 96 Period size: 25 Copynumber: 1.9 Consensus size: 25 59255259 TATTAGCTCA 59255269 ATTTTTATTATTTCATTTAACAATT 1 ATTTTTATTATTTCATTTAACAATT 59255294 ATTTTTATTATTTCATTTAACAA 1 ATTTTTATTATTTCATTTAACAA 59255317 AATCTTGTCC Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 25 23 1.00 ACGTcount: A:0.33, C:0.08, G:0.00, T:0.58 Consensus pattern (25 bp): ATTTTTATTATTTCATTTAACAATT Found at i:59256728 original size:19 final size:18 Alignment explanation
Indices: 59256702--59256765 Score: 60 Period size: 17 Copynumber: 3.6 Consensus size: 18 59256692 TATTGATATC 59256702 TTTATATTTAATTTATTT 1 TTTATATTTAATTTATTT * * 59256720 TTTATTATTTATTTTAGTT 1 TTTA-TATTTAATTTATTT * * * 59256739 TTGAT-TCTAATTTTTTT 1 TTTATATTTAATTTATTT 59256756 TTTAT-TTTAA 1 TTTATATTTAA 59256766 AATTTAAGAT Statistics Matches: 36, Mismatches: 9, Indels: 3 0.75 0.19 0.06 Matches are distributed among these distances: 17 16 0.44 18 5 0.14 19 15 0.42 ACGTcount: A:0.23, C:0.02, G:0.03, T:0.72 Consensus pattern (18 bp): TTTATATTTAATTTATTT Found at i:59256875 original size:34 final size:35 Alignment explanation
Indices: 59256810--59256875 Score: 91 Period size: 34 Copynumber: 1.9 Consensus size: 35 59256800 TTTAATTGTT * 59256810 ATTAATTTATTATTTTAAATTTTAAATTTAAATTC 1 ATTAATTTATTATTTTAAATTTTAAAGTTAAATTC * 59256845 ATTAATTT-TTATATTT-AGTTTTAAAGTTAAA 1 ATTAATTTATTAT-TTTAAATTTTAAAGTTAAA 59256876 ACTTTCATAG Statistics Matches: 28, Mismatches: 2, Indels: 3 0.85 0.06 0.09 Matches are distributed among these distances: 34 17 0.61 35 11 0.39 ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56 Consensus pattern (35 bp): ATTAATTTATTATTTTAAATTTTAAAGTTAAATTC Found at i:59256983 original size:24 final size:22 Alignment explanation
Indices: 59256956--59257011 Score: 62 Period size: 20 Copynumber: 2.5 Consensus size: 22 59256946 GATTTCAAAA 59256956 ATAAAACATAATATAATATTTATC 1 ATAAAA-ATAA-ATAATATTTATC * 59256980 ATAAAAATAAATATTATTTA-- 1 ATAAAAATAAATAATATTTATC * 59257000 ATTAAAATAAAT 1 ATAAAAATAAAT 59257012 TTTTAAAGGA Statistics Matches: 30, Mismatches: 2, Indels: 4 0.83 0.06 0.11 Matches are distributed among these distances: 20 11 0.37 22 9 0.30 23 4 0.13 24 6 0.20 ACGTcount: A:0.59, C:0.04, G:0.00, T:0.38 Consensus pattern (22 bp): ATAAAAATAAATAATATTTATC Found at i:59257282 original size:9 final size:9 Alignment explanation
Indices: 59257265--59257337 Score: 59 Period size: 9 Copynumber: 8.6 Consensus size: 9 59257255 AACTTTGGAT * 59257265 CATAGCTTA 1 CATAACTTA 59257274 CATAACTTA 1 CATAACTTA 59257283 CATAACTTA 1 CATAACTTA * 59257292 TATAA--TA 1 CATAACTTA * 59257299 CATAAATATA 1 CATAACT-TA 59257309 TCAT-A--T- 1 -CATAACTTA 59257315 CATAACTTA 1 CATAACTTA 59257324 CATAACTTA 1 CATAACTTA 59257333 CATAA 1 CATAA 59257338 ATATATATCA Statistics Matches: 53, Mismatches: 3, Indels: 16 0.74 0.04 0.22 Matches are distributed among these distances: 5 3 0.06 6 1 0.02 7 7 0.13 8 1 0.02 9 35 0.66 10 3 0.06 11 3 0.06 ACGTcount: A:0.47, C:0.18, G:0.01, T:0.34 Consensus pattern (9 bp): CATAACTTA Found at i:59257302 original size:16 final size:16 Alignment explanation
Indices: 59257281--59257328 Score: 53 Period size: 16 Copynumber: 3.0 Consensus size: 16 59257271 TTACATAACT 59257281 TACATAACTTATATAA 1 TACATAACTTATATAA * * 59257297 TACATAA-ATATATCA 1 TACATAACTTATATAA * 59257312 TATCATAACTTACATAA 1 TA-CATAACTTATATAA 59257329 CTTACATAAA Statistics Matches: 25, Mismatches: 5, Indels: 3 0.76 0.15 0.09 Matches are distributed among these distances: 15 8 0.32 16 12 0.48 17 5 0.20 ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35 Consensus pattern (16 bp): TACATAACTTATATAA Found at i:59257385 original size:41 final size:36 Alignment explanation
Indices: 59257283--59257364 Score: 118 Period size: 36 Copynumber: 2.4 Consensus size: 36 59257273 ACATAACTTA * 59257283 CATAACTTATATAA--TACAT-AA-ATATATCATAT 1 CATAACTTACATAACTTACATAAATATATATCATAT 59257315 CATAACTTACATAACTTACATAAATATATATCATAT 1 CATAACTTACATAACTTACATAAATATATATCATAT * 59257351 CATCACTTACATAA 1 CATAACTTACATAA 59257365 AACTTTGGAT Statistics Matches: 44, Mismatches: 2, Indels: 4 0.88 0.04 0.08 Matches are distributed among these distances: 32 13 0.30 34 5 0.11 35 2 0.05 36 24 0.55 ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35 Consensus pattern (36 bp): CATAACTTACATAACTTACATAAATATATATCATAT Found at i:59259909 original size:9 final size:9 Alignment explanation
Indices: 59259895--59259925 Score: 62 Period size: 9 Copynumber: 3.4 Consensus size: 9 59259885 CATATACATA 59259895 CAACTAATT 1 CAACTAATT 59259904 CAACTAATT 1 CAACTAATT 59259913 CAACTAATT 1 CAACTAATT 59259922 CAAC 1 CAAC 59259926 CACAACCAAG Statistics Matches: 22, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 22 1.00 ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29 Consensus pattern (9 bp): CAACTAATT Found at i:59260719 original size:53 final size:53 Alignment explanation
Indices: 59260653--59260765 Score: 147 Period size: 53 Copynumber: 2.1 Consensus size: 53 59260643 ACACATAATA * ** * 59260653 CCATACCAATGCCATATCTTAGATATGGTCTTACATG-GGATCTCAAATCGATG 1 CCATATCAATGCCATATCCCAGATATGGTCTTACATGAAG-TCTCAAATCGATG * * * 59260706 CCATATCAATGCCATGTCCCAGATATGGTCTTATATGAAGTCTCATATCGATG 1 CCATATCAATGCCATATCCCAGATATGGTCTTACATGAAGTCTCAAATCGATG 59260759 CCATATC 1 CCATATC 59260766 CCAGATATGG Statistics Matches: 52, Mismatches: 7, Indels: 2 0.85 0.11 0.03 Matches are distributed among these distances: 53 51 0.98 54 1 0.02 ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31 Consensus pattern (53 bp): CCATATCAATGCCATATCCCAGATATGGTCTTACATGAAGTCTCAAATCGATG Found at i:59260779 original size:30 final size:30 Alignment explanation
Indices: 59260745--59260808 Score: 128 Period size: 30 Copynumber: 2.1 Consensus size: 30 59260735 CTTATATGAA 59260745 GTCTCATATCGATGCCATATCCCAGATATG 1 GTCTCATATCGATGCCATATCCCAGATATG 59260775 GTCTCATATCGATGCCATATCCCAGATATG 1 GTCTCATATCGATGCCATATCCCAGATATG 59260805 GTCT 1 GTCT 59260809 TACACATAAA Statistics Matches: 34, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 30 34 1.00 ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31 Consensus pattern (30 bp): GTCTCATATCGATGCCATATCCCAGATATG Found at i:59264707 original size:21 final size:20 Alignment explanation
Indices: 59264679--59264718 Score: 71 Period size: 21 Copynumber: 1.9 Consensus size: 20 59264669 CAAAACTTGT 59264679 ATAACTATCATCAATCATTC 1 ATAACTATCATCAATCATTC 59264699 ATAATCTATCATCAATCATT 1 ATAA-CTATCATCAATCATT 59264719 AAAATACATG Statistics Matches: 19, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 20 4 0.21 21 15 0.79 ACGTcount: A:0.40, C:0.23, G:0.00, T:0.38 Consensus pattern (20 bp): ATAACTATCATCAATCATTC Found at i:59269519 original size:80 final size:80 Alignment explanation
Indices: 59269435--59269583 Score: 183 Period size: 80 Copynumber: 1.9 Consensus size: 80 59269425 TATGGTAACC * * * * 59269435 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG 1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA 59269499 CCCGGATAGAATGACT 65 CCCGGATAGAATGACT * * * * * * * 59269515 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC 59269580 CCGG 66 CCGG 59269584 TTATAATTTC Statistics Matches: 57, Mismatches: 11, Indels: 2 0.81 0.16 0.03 Matches are distributed among these distances: 79 1 0.02 80 56 0.98 ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22 Consensus pattern (80 bp): CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC CCGGATAGAATGACT Found at i:59269525 original size:40 final size:38 Alignment explanation
Indices: 59269476--59269583 Score: 128 Period size: 40 Copynumber: 2.7 Consensus size: 38 59269466 ATCACGATTT * 59269476 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC 1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA * 59269516 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA 1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA * 59269556 GCACAATTGCCTTCGGGTCTTAACCCGG 1 GCACAA-TGCCTTCGGGTCTTAGCCCGG 59269584 TTATAATTTC Statistics Matches: 61, Mismatches: 4, Indels: 6 0.86 0.06 0.08 Matches are distributed among these distances: 38 1 0.02 39 4 0.07 40 56 0.92 ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23 Consensus pattern (38 bp): GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA Found at i:59277510 original size:40 final size:41 Alignment explanation
Indices: 59277465--59277631 Score: 182 Period size: 40 Copynumber: 4.2 Consensus size: 41 59277455 CGGAATATAA * 59277465 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC * * * 59277505 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC * * * 59277545 CCGGATATAA-CCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC ** * * * * 59277585 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC 1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC 59277624 CCGGATAT 1 CCGGATAT 59277632 CATTCAATTT Statistics Matches: 109, Mismatches: 15, Indels: 7 0.83 0.11 0.05 Matches are distributed among these distances: 39 16 0.15 40 93 0.85 ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26 Consensus pattern (41 bp): CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC Found at i:59278480 original size:17 final size:19 Alignment explanation
Indices: 59278457--59278502 Score: 53 Period size: 17 Copynumber: 2.5 Consensus size: 19 59278447 AAGAAGCATG 59278457 AATCATGCTCAAGAATG-C 1 AATCATGCTCAAGAATGAC * 59278475 -ATCATGGC-CAAGTATGAC 1 AATCAT-GCTCAAGAATGAC 59278493 AATCATGCTC 1 AATCATGCTC 59278503 CTTTTCAACT Statistics Matches: 23, Mismatches: 1, Indels: 7 0.74 0.03 0.23 Matches are distributed among these distances: 17 12 0.52 18 5 0.22 19 6 0.26 ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24 Consensus pattern (19 bp): AATCATGCTCAAGAATGAC Found at i:59280536 original size:38 final size:38 Alignment explanation
Indices: 59280475--59280575 Score: 132 Period size: 38 Copynumber: 2.6 Consensus size: 38 59280465 ATTTGATGTG * 59280475 TATCCGGGCTTAAAAACCCGCAGGCTAT-ATGCTGGAATTA 1 TATCCGGG-TT-AAATCCCGCAGGCT-TCATGCTGGAATTA * * * 59280515 TATCCGGGTTAATTCCCGCAGGCTTCGTGCTGGTATTA 1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGAATTA 59280553 TATCCGGGTTAAATCCCGCAGGC 1 TATCCGGGTTAAATCCCGCAGGC 59280576 CTAGTGTTAG Statistics Matches: 55, Mismatches: 5, Indels: 4 0.86 0.08 0.06 Matches are distributed among these distances: 37 1 0.02 38 44 0.80 39 2 0.04 40 8 0.15 ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28 Consensus pattern (38 bp): TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGAATTA Found at i:59285180 original size:46 final size:47 Alignment explanation
Indices: 59285073--59285389 Score: 141 Period size: 46 Copynumber: 6.7 Consensus size: 47 59285063 ACCATATTTT * * 59285073 GAGAGCCAGTGTAAGACCATGTCTGTGACATGGCATCGGCATTGAGAC 1 GAGAGCCAGTGTAAGA-CATGTCTGGGACATGGAATCGGCATTGAGAC * * * * 59285121 GAGTGCTAGTGTAAGACATGTCTGGGACAT-GAATCGGCCTTGAGAT 1 GAGAGCCAGTGTAAGACATGTCTGGGACATGGAATCGGCATTGAGAC * * * * * 59285167 GTA-AGCCAATGTAAGACAT-ACTTGGGACAT-GCATTGGC-TACGAGA- 1 G-AGAGCCAGTGTAAGACATGTC-TGGGACATGGAATCGGCAT-TGAGAC * ** * * * ** * * 59285212 G-GTGTTAGTGTAAGACCATGTTTGGGACATGGCATTGGCACGGATATGT 1 GAGAGCCAGTGTAAGA-CATGTCTGGGACATGGAATCGGCATTGAGA--C ** * * * ** 59285261 GAGAGGTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTC 1 GAGAGCCAGTGTAAGA-CATGTCTGGGACATGGAATCGGCATTGA-GAC * * * * * 59285310 AATAGTCAATGTAAGACCATGTCTGGGACATGGAATCGAC-TTGATG-- 1 GAGAGCCAGTGTAAGA-CATGTCTGGGACATGGAATCGGCATTGA-GAC * 59285356 GATGAGCCAGTGTGAGACCATGTCTGGGACATGG 1 GA-GAGCCAGTGTAAGA-CATGTCTGGGACATGG 59285390 CATTGGCTTT Statistics Matches: 210, Mismatches: 45, Indels: 29 0.74 0.16 0.10 Matches are distributed among these distances: 44 9 0.04 45 14 0.07 46 57 0.27 47 41 0.20 48 18 0.09 49 34 0.16 50 36 0.17 51 1 0.00 ACGTcount: A:0.27, C:0.17, G:0.32, T:0.25 Consensus pattern (47 bp): GAGAGCCAGTGTAAGACATGTCTGGGACATGGAATCGGCATTGAGAC Found at i:59285971 original size:17 final size:18 Alignment explanation
Indices: 59285937--59285982 Score: 51 Period size: 17 Copynumber: 2.6 Consensus size: 18 59285927 GATATATGCA * 59285937 AATGATGAT-ATTTTCATG 1 AATGA-GATAATTTGCATG * 59285955 GATGAG-TAATTTGCATG 1 AATGAGATAATTTGCATG 59285972 AATGAGATAAT 1 AATGAGATAAT 59285983 GCCTTGTGTG Statistics Matches: 23, Mismatches: 3, Indels: 4 0.77 0.10 0.13 Matches are distributed among these distances: 16 1 0.04 17 14 0.61 18 8 0.35 ACGTcount: A:0.37, C:0.04, G:0.22, T:0.37 Consensus pattern (18 bp): AATGAGATAATTTGCATG Found at i:59286158 original size:42 final size:42 Alignment explanation
Indices: 59286098--59286178 Score: 144 Period size: 42 Copynumber: 1.9 Consensus size: 42 59286088 TTATTTTGTC * 59286098 CACACGGTCAGCCTCATGGGCGTGTTGCTAGGTCATGTGCGA 1 CACACGGTCAGCCCCATGGGCGTGTTGCTAGGTCATGTGCGA * 59286140 CACACGGTCAGCCCCATGGGCGTGTTGCTTGGTCATGTG 1 CACACGGTCAGCCCCATGGGCGTGTTGCTAGGTCATGTG 59286179 TCCCCTGTAC Statistics Matches: 37, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 42 37 1.00 ACGTcount: A:0.15, C:0.27, G:0.33, T:0.25 Consensus pattern (42 bp): CACACGGTCAGCCCCATGGGCGTGTTGCTAGGTCATGTGCGA Found at i:59293440 original size:16 final size:17 Alignment explanation
Indices: 59293419--59293457 Score: 71 Period size: 16 Copynumber: 2.4 Consensus size: 17 59293409 CTTGTAACGC 59293419 CCCAAAAATCCCGAAA- 1 CCCAAAAATCCCGAAAT 59293435 CCCAAAAATCCCGAAAT 1 CCCAAAAATCCCGAAAT 59293452 CCCAAA 1 CCCAAA 59293458 TTTTCTTAGT Statistics Matches: 22, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 16 16 0.73 17 6 0.27 ACGTcount: A:0.49, C:0.38, G:0.05, T:0.08 Consensus pattern (17 bp): CCCAAAAATCCCGAAAT Found at i:59295452 original size:40 final size:40 Alignment explanation
Indices: 59295382--59295584 Score: 257 Period size: 40 Copynumber: 5.1 Consensus size: 40 59295372 AAACCAAGTA * * * 59295382 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG 1 CCTTTGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG * 59295421 CCTTTGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG 1 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG * 59295461 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATA 1 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG * * * ** * * 59295501 CCTTCGGGACTTAGCTCGGATATAATCGCTAGCATAAATG 1 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG * * 59295541 CCTTTGGGACATAGCCCGGATATAGCAACTCGCACAAATG 1 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG 59295581 CCTT 1 CCTT 59295585 CGGATCTTAG Statistics Matches: 139, Mismatches: 23, Indels: 3 0.84 0.14 0.02 Matches are distributed among these distances: 39 13 0.09 40 126 0.91 ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26 Consensus pattern (40 bp): CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG Found at i:59298718 original size:28 final size:28 Alignment explanation
Indices: 59298687--59298785 Score: 112 Period size: 28 Copynumber: 3.5 Consensus size: 28 59298677 GACAAGATTG * 59298687 GCACTAAGTGTGCG-GTTTAAAATTGTCA 1 GCACTAAGTGTGCGAGTTTAAAATTAT-A * * 59298715 GCACTAAGTGTGCGAGTTT-GATTCTATA 1 GCACTAAGTGTGCGAGTTTAAAAT-TATA * * 59298743 GCACTAAGTGTGCGAGCTGAAAATATATA 1 GCACTAAGTGTGCGAGTTTAAAAT-TATA 59298772 GCACTAAGTGTGCG 1 GCACTAAGTGTGCG 59298786 GATTCACTAT Statistics Matches: 60, Mismatches: 8, Indels: 5 0.82 0.11 0.07 Matches are distributed among these distances: 28 34 0.57 29 26 0.43 ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29 Consensus pattern (28 bp): GCACTAAGTGTGCGAGTTTAAAATTATA Found at i:59306653 original size:29 final size:28 Alignment explanation
Indices: 59306586--59306657 Score: 92 Period size: 29 Copynumber: 2.5 Consensus size: 28 59306576 AAAATTGTTC * * * 59306586 AGCACTAAGTGTGCGAGTTTGATTCTAT 1 AGCACTAAGTGTGCGAGTCTGAATATAT 59306614 AGCACTAAGTGTGCGAG-CTGAAAATATAT 1 AGCACTAAGTGTGCGAGTCTG--AATATAT 59306643 AGCACTAAGTGTGCG 1 AGCACTAAGTGTGCG 59306658 GATTCACTAT Statistics Matches: 39, Mismatches: 3, Indels: 3 0.87 0.07 0.07 Matches are distributed among these distances: 27 2 0.05 28 17 0.44 29 20 0.51 ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28 Consensus pattern (28 bp): AGCACTAAGTGTGCGAGTCTGAATATAT Found at i:59312026 original size:29 final size:28 Alignment explanation
Indices: 59311967--59312081 Score: 95 Period size: 29 Copynumber: 4.0 Consensus size: 28 59311957 GTGAGCATGA * * * ** * 59311967 ATATGAATATGACTGGGCCTAACAGGAC 1 ATATGAATGTGATTTGGCCTAATGGGCC * 59311995 ATATAAATGTGATTTGGACCTAATGGGCC 1 ATATGAATGTGATTTGG-CCTAATGGGCC * * * 59312024 ATATGTAGGTGATTTAGGCCTAATGGGTC 1 ATATGAATGTGATTT-GGCCTAATGGGCC * * * 59312053 ATATGAATATGATTGGGCTTAATGGGCC 1 ATATGAATGTGATTTGGCCTAATGGGCC 59312081 A 1 A 59312082 GATACAAGTA Statistics Matches: 68, Mismatches: 17, Indels: 4 0.76 0.19 0.04 Matches are distributed among these distances: 28 25 0.37 29 41 0.60 30 2 0.03 ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30 Consensus pattern (28 bp): ATATGAATGTGATTTGGCCTAATGGGCC Found at i:59319539 original size:17 final size:18 Alignment explanation
Indices: 59319505--59319550 Score: 51 Period size: 17 Copynumber: 2.6 Consensus size: 18 59319495 GATATATGCA * 59319505 AATGATGAT-ATTTTCATG 1 AATGA-GATAATTTGCATG * 59319523 GATGAG-TAATTTGCATG 1 AATGAGATAATTTGCATG 59319540 AATGAGATAAT 1 AATGAGATAAT 59319551 GCCTTGTGTG Statistics Matches: 23, Mismatches: 3, Indels: 4 0.77 0.10 0.13 Matches are distributed among these distances: 16 1 0.04 17 14 0.61 18 8 0.35 ACGTcount: A:0.37, C:0.04, G:0.22, T:0.37 Consensus pattern (18 bp): AATGAGATAATTTGCATG Found at i:59319855 original size:70 final size:70 Alignment explanation
Indices: 59319742--59319881 Score: 253 Period size: 70 Copynumber: 2.0 Consensus size: 70 59319732 TGCTTGGTCG * * 59319742 TGTGTCCCCTGCACATAAAATTTGCAAGTCAGTATGCATGGTAGTAAACACACGGGTAGAGACAC 1 TGTGTCCCCTGCACATAAAATTTACAAGTCAGTATGCATGGTAGTAAACACACGGGAAGAGACAC 59319807 GACCA 66 GACCA * 59319812 TGTGTCCCCTGCACATAAAATTTACAAGTCAGTATGCATGGTAGTAAACGCACGGGAAGAGACAC 1 TGTGTCCCCTGCACATAAAATTTACAAGTCAGTATGCATGGTAGTAAACACACGGGAAGAGACAC 59319877 GACCA 66 GACCA 59319882 CGTATCTCAG Statistics Matches: 67, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 70 67 1.00 ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21 Consensus pattern (70 bp): TGTGTCCCCTGCACATAAAATTTACAAGTCAGTATGCATGGTAGTAAACACACGGGAAGAGACAC GACCA Found at i:59322323 original size:43 final size:41 Alignment explanation
Indices: 59322274--59322422 Score: 131 Period size: 44 Copynumber: 3.5 Consensus size: 41 59322264 CAATGCCAAC * 59322274 GTCCCAGACGTGGTCTTACATGTAATCAAACATCGATACCACT 1 GTCCCAGACGTGGTCTTACATGTAATCAAA-ATCGATGCCA-T * * * * 59322317 ATCCCAGACAG-AGTCTTACATGAAATC-AAATACGATGCTGAT 1 GTCCCAGAC-GTGGTCTTACATGTAATCAAAAT-CGATGC-CAT * * * * 59322359 GTCCCAGACATGGTCTTACACGTAAAACAGAAGTCGATGCCAAT 1 GTCCCAGACGTGGTCTTACATGT-AATCA-AAATCGATGCC-AT 59322403 GTCCCAGACGTGGTCTTACA 1 GTCCCAGACGTGGTCTTACA 59322423 CAAAACCACA Statistics Matches: 84, Mismatches: 14, Indels: 15 0.74 0.12 0.13 Matches are distributed among these distances: 41 2 0.02 42 25 0.30 43 26 0.31 44 28 0.33 45 3 0.04 ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23 Consensus pattern (41 bp): GTCCCAGACGTGGTCTTACATGTAATCAAAATCGATGCCAT Found at i:59322410 original size:44 final size:42 Alignment explanation
Indices: 59322266--59322423 Score: 142 Period size: 43 Copynumber: 3.7 Consensus size: 42 59322256 AACATATACA * * * 59322266 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAACATCG 1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATC-AA-ATCG * * * * 59322309 ATACCACTATCCCAGACA-GAGTCTTACATG-AAATCAAATACG 1 ATGCCAATGTCCCAGACATG-GTCTTACACGTAAATCAAAT-CG ** * 59322351 ATGCTGATGTCCCAGACATGGTCTTACACGTAAAACAGAAGTCG 1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCA-AA-TCG * 59322395 ATGCCAATGTCCCAGACGTGGTCTTACAC 1 ATGCCAATGTCCCAGACATGGTCTTACAC 59322424 AAAACCACAT Statistics Matches: 93, Mismatches: 15, Indels: 13 0.77 0.12 0.11 Matches are distributed among these distances: 41 2 0.02 42 27 0.29 43 33 0.35 44 30 0.32 45 1 0.01 ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23 Consensus pattern (42 bp): ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATCG Found at i:59324944 original size:40 final size:40 Alignment explanation
Indices: 59324874--59325079 Score: 254 Period size: 40 Copynumber: 5.2 Consensus size: 40 59324864 AAACCAAGTA * * 59324874 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG 1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG * * * 59324913 CCTTCGGGACTTATCCCGGTTATAGTAACTCGCACAAAGG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG * * 59324953 CCTTCGGGACTTAGCTCGGATATAGTAACTCACACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG * ** * * 59324993 CCTTCGGGACTTAGCCCGGATATAATTGCTAGCATAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG * * * 59325033 CCTTCGGGACATAGCCCAGATATAGCAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG 59325073 CCTTCGG 1 CCTTCGG 59325080 ATCTTAGTCC Statistics Matches: 140, Mismatches: 25, Indels: 3 0.83 0.15 0.02 Matches are distributed among these distances: 39 13 0.09 40 127 0.91 ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25 Consensus pattern (40 bp): CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG Found at i:59333002 original size:40 final size:40 Alignment explanation
Indices: 59332925--59333130 Score: 256 Period size: 40 Copynumber: 5.2 Consensus size: 40 59332915 AAACCAAGTA * * * 59332925 CCTTCGGGA-TTAAG-CCAGATATAGCT-ACCCGCTCAAATG 1 CCTTCGGGACTT-AGCCCGGATATAG-TAACTCGCACAAATG * 59332964 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG * 59333004 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATTG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG * * ** * * 59333044 CCTTTGGGACTTAGCCCGGATATAATCGCTAGCATAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG * * 59333084 CCTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG 59333124 CCTTCGG 1 CCTTCGG 59333131 ATCTTAGTCC Statistics Matches: 143, Mismatches: 21, Indels: 5 0.85 0.12 0.03 Matches are distributed among these distances: 39 12 0.08 40 131 0.92 ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24 Consensus pattern (40 bp): CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG Found at i:59337593 original size:24 final size:24 Alignment explanation
Indices: 59337566--59337638 Score: 64 Period size: 24 Copynumber: 3.2 Consensus size: 24 59337556 TGGTCTGAGT 59337566 TCATGATATATGTGCCATCTAAAC 1 TCATGATATATGTGCCATCTAAAC * * ** 59337590 TCATTAAATTATG-G---TCTAAGT 1 TCATGATA-TATGTGCCATCTAAAC * 59337611 TCATGATATATGTGCCATCTGAAC 1 TCATGATATATGTGCCATCTAAAC 59337635 TCAT 1 TCAT 59337639 TAAATTATGG Statistics Matches: 35, Mismatches: 9, Indels: 10 0.65 0.17 0.19 Matches are distributed among these distances: 20 4 0.11 21 12 0.34 24 15 0.43 25 4 0.11 ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37 Consensus pattern (24 bp): TCATGATATATGTGCCATCTAAAC Found at i:59337593 original size:45 final size:45 Alignment explanation
Indices: 59337537--59337669 Score: 212 Period size: 45 Copynumber: 3.0 Consensus size: 45 59337527 AAACTATGTG * * * 59337537 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGCC 1 ATCTGAACTCATTAAATTATGGTCTGAGTTCATGATATATGTGCC * * 59337582 ATCTAAACTCATTAAATTATGGTCTAAGTTCATGATATATGTGCC 1 ATCTGAACTCATTAAATTATGGTCTGAGTTCATGATATATGTGCC * 59337627 ATCTGAACTCATTAAATTATGGTCTGAGTTCATGATGTATGTG 1 ATCTGAACTCATTAAATTATGGTCTGAGTTCATGATATATGTG 59337670 ACACATGTTT Statistics Matches: 80, Mismatches: 8, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 45 80 1.00 ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38 Consensus pattern (45 bp): ATCTGAACTCATTAAATTATGGTCTGAGTTCATGATATATGTGCC Found at i:59337602 original size:25 final size:25 Alignment explanation
Indices: 59337574--59337647 Score: 68 Period size: 21 Copynumber: 3.2 Consensus size: 25 59337564 GTTCATGATA 59337574 TATGTGCCATCTAAACTCATTAAAT 1 TATGTGCCATCTAAACTCATTAAAT ** * * 59337599 TATG-G---TCTAAGTTCATGATA- 1 TATGTGCCATCTAAACTCATTAAAT * 59337619 TATGTGCCATCTGAACTCATTAAAT 1 TATGTGCCATCTAAACTCATTAAAT 59337644 TATG 1 TATG 59337648 GTCTGAGTTC Statistics Matches: 35, Mismatches: 9, Indels: 10 0.65 0.17 0.19 Matches are distributed among these distances: 20 4 0.11 21 12 0.34 24 11 0.31 25 8 0.23 ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38 Consensus pattern (25 bp): TATGTGCCATCTAAACTCATTAAAT Done.