Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 196 of 325
Found at i:60404871 original size:17 final size:17
Alignment explanation
Indices: 60404849--60404905 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
60404839 CGGCTTTACC
60404849 ACATATACATATCTCAT
1 ACATATACATATCTCAT
* * *
60404866 ACATATTTCACAT-T-AGC
1 ACATA-TACATATCTCA-T
60404883 ACATATACATATCTCAT
1 ACATATACATATCTCAT
60404900 ACATAT
1 ACATAT
60404906 TTCACATTAG
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
16 6 0.20
17 18 0.60
18 6 0.20
ACGTcount: A:0.40, C:0.23, G:0.02, T:0.35
Consensus pattern (17 bp):
ACATATACATATCTCAT
Found at i:60404887 original size:34 final size:34
Alignment explanation
Indices: 60404848--60404916 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
60404838 TCGGCTTTAC
60404848 CACATATACATATCTCATACATATTTCACATTAG
1 CACATATACATATCTCATACATATTTCACATTAG
60404882 CACATATACATATCTCATACATATTTCACATTAG
1 CACATATACATATCTCATACATATTTCACATTAG
60404916 C
1 C
60404917 CATTCGGCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.38, C:0.25, G:0.03, T:0.35
Consensus pattern (34 bp):
CACATATACATATCTCATACATATTTCACATTAG
Found at i:60404993 original size:96 final size:96
Alignment explanation
Indices: 60404882--60405338 Score: 842
Period size: 96 Copynumber: 4.8 Consensus size: 96
60404872 TTCACATTAG
*
60404882 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACCTCA
1 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
60404947 TACATATTTCACATTAGCCACTCGGCTTTAC
66 TACATATTTCACAGTAGCCATTCGGCTTTAC
60404978 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
60405043 TATATATTTCACAGTAGCCATTCGGCTTTAC
66 TACATATTTCACAGTAGCCATTCGGCTTTAC
* *
60405074 CACATATACATACCTCATACATATTTCACATTAGCCACTCGGCTTTACCACATATACATATCTCA
1 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
60405139 TACATATTTCACAGTAGCCATTCGGCTTTAC
66 TACATATTTCACAGTAGCCATTCGGCTTTAC
60405170 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
60405235 TATATATTTCACAGTAGCCATTCGGCTTTAC
66 TACATATTTCACAGTAGCCATTCGGCTTTAC
*
60405266 CACATATACATATCTCATACATATTTCACGTTAGCCATTCGGCTTTACCACATATACATATCTCA
1 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
60405331 TACATATT
66 TACATATT
60405339 AATCTTGTAC
Statistics
Matches: 349, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 349 1.00
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (96 bp):
CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
TACATATTTCACAGTAGCCATTCGGCTTTAC
Found at i:60405053 original size:144 final size:144
Alignment explanation
Indices: 60404882--60405338 Score: 842
Period size: 144 Copynumber: 3.2 Consensus size: 144
60404872 TTCACATTAG
60404882 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACCTCA
1 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACCTCA
60404947 TACATATTTCACATTAGCCACTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
66 TACATATTTCACATTAGCCACTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
60405012 CCATTCGGCTTTAC
131 CCATTCGGCTTTAC
* *
60405026 CACATATACATATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACATACCTCA
1 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACCTCA
*
60405091 TACATATTTCACATTAGCCACTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAG
66 TACATATTTCACATTAGCCACTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
60405156 CCATTCGGCTTTAC
131 CCATTCGGCTTTAC
*
60405170 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACCTCA
* * * *
60405235 TATATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACGTTAG
66 TACATATTTCACATTAGCCACTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
60405300 CCATTCGGCTTTAC
131 CCATTCGGCTTTAC
60405314 CACATATACATATCTCATACATATT
1 CACATATACATATCTCATACATATT
60405339 AATCTTGTAC
Statistics
Matches: 302, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
144 302 1.00
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (144 bp):
CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACCTCA
TACATATTTCACATTAGCCACTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTAC
Found at i:60408737 original size:32 final size:32
Alignment explanation
Indices: 60408692--60408770 Score: 113
Period size: 32 Copynumber: 2.5 Consensus size: 32
60408682 TGATGTTGAA
* * * *
60408692 ATGGGCTAAGCCCAACTGATACTGGTTCTGAT
1 ATGGGCTAGGCCCAACTGATACTGATTCTAAG
*
60408724 ATGGGCTAGGCCCAACTGATATTGATTCTAAG
1 ATGGGCTAGGCCCAACTGATACTGATTCTAAG
60408756 ATGGGCTAGGCCCAA
1 ATGGGCTAGGCCCAA
60408771 TTGGGACTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (32 bp):
ATGGGCTAGGCCCAACTGATACTGATTCTAAG
Found at i:60412926 original size:13 final size:13
Alignment explanation
Indices: 60412910--60412942 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
60412900 TTTGATTAAA
*
60412910 TTAGTTAATTAGT
1 TTAGATAATTAGT
60412923 TTAGATAATTAGT
1 TTAGATAATTAGT
60412936 TTA-ATAA
1 TTAGATAA
60412943 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:60414389 original size:18 final size:18
Alignment explanation
Indices: 60414353--60414387 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
60414343 GATAGGCCGA
60414353 AATGGGCCATGTGGGCCC
1 AATGGGCCATGTGGGCCC
*
60414371 AATGGGCTA-GTGGGCCC
1 AATGGGCCATGTGGGCCC
60414388 CACACATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.17, C:0.26, G:0.40, T:0.17
Consensus pattern (18 bp):
AATGGGCCATGTGGGCCC
Found at i:60415023 original size:32 final size:32
Alignment explanation
Indices: 60414978--60415061 Score: 98
Period size: 32 Copynumber: 2.6 Consensus size: 32
60414968 ATTGAAATGT
*
60414978 GCTAGGCCCAACTGATACTGGTTCTGAT-ATAG
1 GCTAGGCCCAACTGATACTGATTCTG-TGATAG
* * *
60415010 GCTAGGCCTAACTGATATTGATTCTGTGATGG
1 GCTAGGCCCAACTGATACTGATTCTGTGATAG
* *
60415042 GCTAGGCCCAATTGAGACTG
1 GCTAGGCCCAACTGATACTG
60415062 TGATGGGTTG
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 1 0.02
32 42 0.98
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (32 bp):
GCTAGGCCCAACTGATACTGATTCTGTGATAG
Found at i:60417003 original size:21 final size:23
Alignment explanation
Indices: 60416962--60417003 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
60416952 TCAAATTCCA
60416962 ACCATTTCATAACCAAAACATAC
1 ACCATTTCATAACCAAAACATAC
*
60416985 ACCATTT-AT-ACCAATACAT
1 ACCATTTCATAACCAAAACAT
60417004 TATCAACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 2 0.11
23 7 0.39
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (23 bp):
ACCATTTCATAACCAAAACATAC
Found at i:60419350 original size:68 final size:70
Alignment explanation
Indices: 60419278--60419475 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
60419268 ACACCCTGTA
* * * *
60419278 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
60419340 ATAAAT
65 ATAAAT
*
60419346 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
60419411 ATAAAT
65 ATAAAT
*
60419417 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
60419476 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:60419389 original size:41 final size:41
Alignment explanation
Indices: 60419344--60419461 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
60419334 TGAAAGATAA
60419344 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
60419385 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60419415 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60419456 ATGTAG
1 ATGTAG
60419462 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:60419401 original size:71 final size:71
Alignment explanation
Indices: 60419312--60419475 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
60419302 GAGATGTATC
60419312 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60419377 AGGACA
66 AGGACA
60419383 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60419448 AGGACA
66 AGGACA
60419454 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
60419476 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:60426904 original size:68 final size:70
Alignment explanation
Indices: 60426832--60427029 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
60426822 ACACCCTGTA
* * * *
60426832 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
60426894 ATAAAT
65 ATAAAT
*
60426900 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
60426965 ATAAAT
65 ATAAAT
*
60426971 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
60427030 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:60426943 original size:41 final size:41
Alignment explanation
Indices: 60426898--60427015 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
60426888 TGAAAGATAA
60426898 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
60426939 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60426969 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60427010 ATGTAG
1 ATGTAG
60427016 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:60426955 original size:71 final size:71
Alignment explanation
Indices: 60426866--60427029 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
60426856 GAGATGTATC
60426866 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60426931 AGGACA
66 AGGACA
60426937 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60427002 AGGACA
66 AGGACA
60427008 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
60427030 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:60432742 original size:21 final size:21
Alignment explanation
Indices: 60432718--60432758 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
60432708 CAACGGAGCA
*
60432718 AGTTTGCTAAAAATAGGAGTT
1 AGTTTGCTAAAAACAGGAGTT
60432739 AGTTTGCTAAAAACAGGAGT
1 AGTTTGCTAAAAACAGGAGT
60432759 GTCCATCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.29
Consensus pattern (21 bp):
AGTTTGCTAAAAACAGGAGTT
Found at i:60437018 original size:30 final size:30
Alignment explanation
Indices: 60436982--60437041 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
60436972 ATCTACTGAG
*
60436982 GCGATAATGTGTAAGAGATTTGAAGATGGT
1 GCGATAATGTCTAAGAGATTTGAAGATGGT
60437012 GCGATAATGTCTAAGAGATTTGAAGATGGT
1 GCGATAATGTCTAAGAGATTTGAAGATGGT
60437042 TTGAATAAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.33, C:0.05, G:0.32, T:0.30
Consensus pattern (30 bp):
GCGATAATGTCTAAGAGATTTGAAGATGGT
Found at i:60438203 original size:11 final size:12
Alignment explanation
Indices: 60438175--60438205 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
60438165 TAATGAAATG
60438175 GAAAAAAATGAA
1 GAAAAAAATGAA
*
60438187 GAAAAAGATGAA
1 GAAAAAAATGAA
60438199 GAAAAAA
1 GAAAAAA
60438206 GGGATTATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.06
Consensus pattern (12 bp):
GAAAAAAATGAA
Found at i:60439360 original size:27 final size:28
Alignment explanation
Indices: 60439300--60439369 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
60439290 AAATTTGTAC
60439300 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
* *
60439328 AACACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
60439355 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
60439370 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:60439380 original size:27 final size:27
Alignment explanation
Indices: 60439302--60439381 Score: 65
Period size: 27 Copynumber: 2.9 Consensus size: 27
60439292 ATTTGTACAG
* *
60439302 CACTAAGTGTGCGAGTTTGA-TCATATAA
1 CACTAAGTGTGCGAG-CTCACT-ATATAA
* * * *
60439330 CACTAAGTGTGCGAGTTGATTATATAG
1 CACTAAGTGTGCGAGCTCACTATATAA
60439357 CACTAAGTGTGCG-GACTCACTATAT
1 CACTAAGTGTGCGAG-CTCACTATAT
60439382 GCTTTTGAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.63
28 16 0.35
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (27 bp):
CACTAAGTGTGCGAGCTCACTATATAA
Found at i:60444894 original size:14 final size:14
Alignment explanation
Indices: 60444877--60444903 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
60444867 ATAAGAGTAT
60444877 GAAAAAAAAAAAGA
1 GAAAAAAAAAAAGA
60444891 GAAAAAAAAAAAG
1 GAAAAAAAAAAAG
60444904 TTCATTCTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (14 bp):
GAAAAAAAAAAAGA
Found at i:60445545 original size:40 final size:40
Alignment explanation
Indices: 60445380--60445546 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
60445370 AAATTGAATG
* * **
60445380 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * **
60445419 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
*
60445459 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
** *
60445499 CGATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
60445539 ATATCCGG
1 ATATCCGG
60445547 TTATATTCCG
Statistics
Matches: 104, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
39 17 0.16
40 85 0.82
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:60452750 original size:40 final size:40
Alignment explanation
Indices: 60452585--60452751 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
60452575 AAATTGAATG
* * **
60452585 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * **
60452624 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
*
60452664 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
** *
60452704 CGATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
60452744 ATATCCGG
1 ATATCCGG
60452752 TTATATTCCG
Statistics
Matches: 104, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
39 17 0.16
40 85 0.82
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:60463895 original size:10 final size:10
Alignment explanation
Indices: 60463880--60463906 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
60463870 TAAGTTGAAG
60463880 TTGAGCTGAT
1 TTGAGCTGAT
60463890 TTGAGCTGAT
1 TTGAGCTGAT
60463900 TTGAGCT
1 TTGAGCT
60463907 TGAAGGAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.11, G:0.30, T:0.41
Consensus pattern (10 bp):
TTGAGCTGAT
Found at i:60468712 original size:80 final size:80
Alignment explanation
Indices: 60468493--60468718 Score: 280
Period size: 80 Copynumber: 2.8 Consensus size: 80
60468483 TCGAATGATG
* * *
60468493 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCTGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACTGGACTAAGATCCGAAGGCATT
**
60468557 CCTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* * * *
60468573 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGATCTGAAGGTAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA-CTGGACTAAGATCCGAAGGCAT
60468636 TTGTGCGAGTTACTAAA
64 TTGTGCGAGTTACTAAA
* * *
60468653 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACTGGGCTATG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACTGGACTAAGAT-CCGAAGGCATT
60468717 TG
65 TG
60468719 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
79 3 0.02
80 111 0.90
81 10 0.08
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACTGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:60468718 original size:40 final size:40
Alignment explanation
Indices: 60468493--60468690 Score: 249
Period size: 40 Copynumber: 5.0 Consensus size: 40
60468483 TCGAATGATG
* * * *
60468493 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* **
60468533 TCTGGACTAAGATCCGAAGGCATTCCTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
60468573 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
* *
60468613 TCCGGACTAAGATCTGAAGGTATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
**
60468653 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
60468691 TAACTGGGCT
Statistics
Matches: 139, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 1 0.01
40 132 0.95
41 6 0.04
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60468725 original size:40 final size:40
Alignment explanation
Indices: 60468493--60468725 Score: 174
Period size: 40 Copynumber: 5.8 Consensus size: 40
60468483 TCGAATGATG
** * * *
60468493 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTTACTAAA
* *
60468533 TCTGGACTAAGAT-CCGAAGGCATTCCTG--CGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATT--TGAACGAGTTACTAAA
* **
60468573 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGAACGAGTTACTAAA
* * * **
60468613 TCCGGACTAAGAT-CTGAAGGTATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGAACGAGTTACTAAA
* **
60468653 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTA-AA
* *
60468694 -CTGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGT
60468726 AGCTATATCC
Statistics
Matches: 168, Mismatches: 17, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 1 0.01
40 157 0.93
41 6 0.04
43 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAA
Found at i:60474571 original size:30 final size:29
Alignment explanation
Indices: 60474477--60474578 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
60474467 TATAGTGAAT
* * *
60474477 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
60474506 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
60474534 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
60474564 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
60474579 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:60478108 original size:93 final size:90
Alignment explanation
Indices: 60477952--60478123 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 90
60477942 TGTGAGGTCG
60477952 TGTGTAGTACTAAGTGCAGGCTACGTGTACCGATAATTGGTCGCATGTGTAGTACTAAGTGCAGG
1 TGTGTAGTACTAAGTGCAGGCTACGTGTACCGATAATTGGTCGCATGTGTAGTACTAAGTGCAGG
60478017 CTACTATGCGTACCGAAAACTGTGA
66 CTACTATGCGTACCGAAAACTGTGA
60478042 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-ATTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGG---CTACGTGTACC-GATAATTGGTCGCATGTGTAGTACTAAGTG
60478106 CAGGCTACTATGCGTACC
62 CAGGCTACTATGCGTACC
60478124 AGATAGCTTC
Statistics
Matches: 78, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
90 20 0.26
93 55 0.71
94 3 0.04
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (90 bp):
TGTGTAGTACTAAGTGCAGGCTACGTGTACCGATAATTGGTCGCATGTGTAGTACTAAGTGCAGG
CTACTATGCGTACCGAAAACTGTGA
Found at i:60478112 original size:48 final size:47
Alignment explanation
Indices: 60477952--60478128 Score: 222
Period size: 45 Copynumber: 3.8 Consensus size: 47
60477942 TGTGAGGTCG
*
60477952 TGTGTAGTACTAAGTGCAGG---CTACGTGTACCGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGAT-ATTGGTCGCA
* * *
60477997 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGAAAACT-GT-G-A
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCG-ATATTGGTCGCA
*
60478042 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACC-GATATTGGTCGCA
*
60478090 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACC-GATA
60478129 GCTTCGGCTA
Statistics
Matches: 114, Mismatches: 10, Indels: 13
0.83 0.07 0.09
Matches are distributed among these distances:
45 56 0.49
46 4 0.04
47 3 0.03
48 50 0.44
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (47 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGATATTGGTCGCA
Found at i:60481118 original size:29 final size:27
Alignment explanation
Indices: 60481069--60481133 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
60481059 TATCGTATCT
*
60481069 TGGGTTTCTTTATCTGGTTTCTTTATTC
1 TGGGTTT-TCTATCTGGTTTCTTTATTC
60481097 TGGGTTTTCTATCTTGGATTTCTTTATTC
1 TGGGTTTTCTATC-TGG-TTTCTTTATTC
60481126 --GGTTTTCT
1 TGGGTTTTCT
60481134 TGTTATCTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
27 13 0.38
28 10 0.29
29 11 0.32
ACGTcount: A:0.08, C:0.14, G:0.18, T:0.60
Consensus pattern (27 bp):
TGGGTTTTCTATCTGGTTTCTTTATTC
Found at i:60481134 original size:14 final size:15
Alignment explanation
Indices: 60481073--60481134 Score: 55
Period size: 13 Copynumber: 4.4 Consensus size: 15
60481063 GTATCTTGGG
60481073 TTTCTTTA-TCTGG-
1 TTTCTTTATTCTGGT
60481086 TTTCTTTATTCTGGGT
1 TTTCTTTATTCT-GGT
*
60481102 TTTC--TA-TCTTGGA
1 TTTCTTTATTC-TGGT
60481115 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGT
60481129 TTTCTT
1 TTTCTT
60481135 GTTATCTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 13
0.73 0.04 0.24
Matches are distributed among these distances:
13 16 0.40
14 14 0.35
15 4 0.10
16 6 0.15
ACGTcount: A:0.08, C:0.15, G:0.15, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGT
Found at i:60483435 original size:49 final size:48
Alignment explanation
Indices: 60483263--60483447 Score: 239
Period size: 49 Copynumber: 3.8 Consensus size: 48
60483253 TGTGAGGTCG
* *
60483263 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAATTGGTCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGATAATTGGTCGCA
* * * *
60483311 TGTGTAGTACTAAGTGCAGGCTACTA--TGTACTCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-CGATAA-T-TGGTCGCA
*
60483360 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACC-GATAATTGGTCGCA
*
60483409 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACC-GATA
60483448 GCTTCGGCTA
Statistics
Matches: 119, Mismatches: 12, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
46 5 0.04
47 5 0.04
48 27 0.23
49 72 0.61
50 2 0.02
51 8 0.07
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGATAATTGGTCGCA
Found at i:60488730 original size:29 final size:28
Alignment explanation
Indices: 60488688--60488800 Score: 111
Period size: 28 Copynumber: 4.0 Consensus size: 28
60488678 CATGACTGTA
60488688 AATGTGATTTGGGCCTAATGGGCCATATG
1 AATGTGA-TTGGGCCTAATGGGCCATATG
* * * *
60488717 AATGTGATTTGGGCCTAATCGGCTACATA
1 AATGTGA-TTGGGCCTAATGGGCCATATG
*
60488746 AAT-TAGAATGGGCCTAATGGGCCATATG
1 AATGT-GATTGGGCCTAATGGGCCATATG
* * * *
60488774 AAAGAGATTGGGCCTAGTAGGCCATAT
1 AATGTGATTGGGCCTAATGGGCCATAT
60488801 ATATATAGGT
Statistics
Matches: 68, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
28 38 0.56
29 30 0.44
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.27
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATG
Found at i:60503478 original size:29 final size:28
Alignment explanation
Indices: 60503436--60503548 Score: 111
Period size: 28 Copynumber: 4.0 Consensus size: 28
60503426 CATGACTATA
60503436 AATGTGACTTGGGCCTAATGGGCCATATG
1 AATGTGA-TTGGGCCTAATGGGCCATATG
* * * *
60503465 AATGTGATTTGGGCCTAATCGGCTACATA
1 AATGTGA-TTGGGCCTAATGGGCCATATG
*
60503494 AAT-TAGAATGGGCCTAATGGGCCATATG
1 AATGT-GATTGGGCCTAATGGGCCATATG
*** *
60503522 AAACAGATTGGGCCTAGTGGGCCATAT
1 AATGTGATTGGGCCTAATGGGCCATAT
60503549 ATACATAGGT
Statistics
Matches: 68, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
28 39 0.57
29 29 0.43
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATG
Found at i:60511567 original size:24 final size:24
Alignment explanation
Indices: 60511540--60511625 Score: 91
Period size: 24 Copynumber: 3.5 Consensus size: 24
60511530 GCGTTTCCTT
*
60511540 GCACACATAGTGCTATATAATCTC
1 GCACACATAGTGCCATATAATCTC
* * * *
60511564 GCACACATAGTGCCATGTAGTTTTT
1 GCACACATAGTGCCATATA-ATCTC
** *
60511589 GCACACATAGTGCCGCATAACCTC
1 GCACACATAGTGCCATATAATCTC
60511613 GCACACATAGTGC
1 GCACACATAGTGC
60511626 TGAAATCTCT
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
24 31 0.63
25 18 0.37
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (24 bp):
GCACACATAGTGCCATATAATCTC
Found at i:60511591 original size:49 final size:47
Alignment explanation
Indices: 60511491--60511625 Score: 139
Period size: 49 Copynumber: 2.8 Consensus size: 47
60511481 TTAAAGGTCC
* * *
60511491 GCACACATAGTGCTCT-TACTCATTCGCACACATAGTGCCGCGTTTCCTT
1 GCACACATAGTGCTATATAATC--TCGCACACATAGTGCCGAGTTT-CTT
60511540 GCACACATAGTGCTATATAATCTCGCACACATAGTGCCATGTAGTTT-TT
1 GCACACATAGTGCTATATAATCTCGCACACATAGTGCC--G-AGTTTCTT
*** *
60511589 GCACACATAGTGCCGCATAACCTCGCACACATAGTGC
1 GCACACATAGTGCTATATAATCTCGCACACATAGTGC
60511626 TGAAATCTCT
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
48 16 0.21
49 50 0.67
50 5 0.07
51 4 0.05
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (47 bp):
GCACACATAGTGCTATATAATCTCGCACACATAGTGCCGAGTTTCTT
Found at i:60533028 original size:40 final size:40
Alignment explanation
Indices: 60532984--60533209 Score: 219
Period size: 40 Copynumber: 5.7 Consensus size: 40
60532974 GCTACTCGTT
* * * *
60532984 CAAATACCTTCGGGACATAGCTCGG-TTATAGTAGCTCGGA
1 CAAATGCCTTCGGGACATAGCCCGGATT-TAGTAACTCGCA
* * *
60533024 CAAATGCCTTCAGGACTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
* *
60533064 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CATAGCCCGGATTTAGTAACTCGCA
* *
60533104 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CATAGCCCGGATTTAGTAACTCGCA
* * * * *
60533144 CAATTGCCTTC-AGATCTTAGTCCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGA-CATAGCCCGGATTTAGTAAC-TCGCA
*
60533185 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGA
60533210 CATCATTCGA
Statistics
Matches: 167, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.02
40 153 0.92
41 11 0.07
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
Found at i:60533107 original size:80 final size:79
Alignment explanation
Indices: 60533012--60533209 Score: 283
Period size: 80 Copynumber: 2.5 Consensus size: 79
60533002 AGCTCGGTTA
* * *
60533012 TAGTAGCTCGGACAAATGCCTTCAGGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTC-GGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCAG
60533077 ATCTTAGTCCGGATT
65 ATCTTAGTCCGGATT
*
60533092 TAGTAACTCGCACAAATGCCTTCGGATCTTAGT-CCGGATTTAGTAACTCGCACAATTGCCTTCA
1 TAGTAACTCGCACAAATGCCTTCGGA-CTTA-TCCCGGATTTAGTAACTCGCACAAATGCCTTCA
60533156 GATCTTAGTCCGGATT
64 GATCTTAGTCCGGATT
* *
60533172 TAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTC-GGACTTATCCCGGA
60533210 CATCATTCGA
Statistics
Matches: 107, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
79 3 0.03
80 92 0.86
81 12 0.11
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (79 bp):
TAGTAACTCGCACAAATGCCTTCGGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCAGA
TCTTAGTCCGGATT
Found at i:60536067 original size:40 final size:39
Alignment explanation
Indices: 60535956--60536107 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
60535946 TATAACATGT
* ** *
60535956 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
60535996 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
60536036 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * *
60536076 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
60536108 CATTCAATTT
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 93 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:60536090 original size:80 final size:80
Alignment explanation
Indices: 60535956--60536107 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
60535946 TATAACATGT
* *
60535956 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
60536021 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
60536036 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
60536099 CCCGGATAT
64 CCCGGATAT
60536108 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:60537343 original size:54 final size:53
Alignment explanation
Indices: 60537285--60537389 Score: 131
Period size: 54 Copynumber: 2.0 Consensus size: 53
60537275 TCCCCTTTTC
* * *
60537285 CTTAGTATTTTCGGCCAAGAAGTGA-AAAGATGAACAAATTTTTTTCTTTTCTTT
1 CTTAGGATATTCGGCCAAG-AGGGAGAAAGATGAAC-AATTTTTTTCTTTTCTTT
* * *
60537339 CTTAGGATATTCGGCCAAGGGGGAGAAAGATGAACACTTTTTTTTTTTTCT
1 CTTAGGATATTCGGCCAAGAGGGAGAAAGATGAACAATTTTTTTCTTTTCT
60537390 CATCCTACTC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
53 17 0.39
54 27 0.61
ACGTcount: A:0.28, C:0.13, G:0.19, T:0.40
Consensus pattern (53 bp):
CTTAGGATATTCGGCCAAGAGGGAGAAAGATGAACAATTTTTTTCTTTTCTTT
Found at i:60544046 original size:40 final size:39
Alignment explanation
Indices: 60543935--60544086 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
60543925 TATAACATGT
* ** *
60543935 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
60543975 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
60544015 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * *
60544055 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
60544087 CATTCAATTT
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 93 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:60544069 original size:80 final size:80
Alignment explanation
Indices: 60543935--60544086 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
60543925 TATAACATGT
* *
60543935 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
60544000 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
60544015 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
60544078 CCCGGATAT
64 CCCGGATAT
60544087 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:60547500 original size:40 final size:40
Alignment explanation
Indices: 60547455--60547622 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
60547445 CGGAATATAA
*
60547455 CCGGATATAAGCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * *
60547495 CCGGATAGAATG-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
60547535 CCGGATAT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
60547575 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
60547615 CCGGATAT
1 CCGGATAT
60547623 CATTCAATTT
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 102 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60547605 original size:80 final size:80
Alignment explanation
Indices: 60547471--60547622 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
60547461 ATAAGCATGT
* *
60547471 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
60547536 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
60547551 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
60547614 CCCGGATAT
64 CCCGGATAT
60547623 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:60556051 original size:40 final size:40
Alignment explanation
Indices: 60556007--60556229 Score: 204
Period size: 40 Copynumber: 5.6 Consensus size: 40
60555997 GCTACTCGTT
* *
60556007 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCACA
1 CAAATGCCTTCGGGACATAGCCCGGATT-TAGTAACTCACA
* * * *
60556047 CAAATGCCTTCAGGACTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACA
* * **
60556087 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGA-CATAGCCCGGATTTAGTAACTCACA
* * *
60556127 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CATAGCCCGGATTTAGTAACTCACA
* * * *
60556167 CAATTGCCTTC-GGATCTTAGTCCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGA-CATAGCCCGGATTTAGTAACTCA-CA
*
60556208 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACATAGCCC
60556230 AGACATCATT
Statistics
Matches: 164, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.02
40 151 0.92
41 10 0.06
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACA
Found at i:60556129 original size:80 final size:80
Alignment explanation
Indices: 60556045--60556226 Score: 298
Period size: 80 Copynumber: 2.3 Consensus size: 80
60556035 TAGTAGCTCA
60556045 CACAAATGCCTTCAGGACTTA-TCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTC
1 CACAAATGCCTTC-GGACTTAGT-CCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTC
60556109 CGGATTTAGTAACTT-G
64 CGGATTTAGTAACTTAG
*
60556125 CACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAATTGCCTTCGGATCTTAGTCC
1 CACAAATGCCTTCGGA-CTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCC
60556190 GGATTTAGTAACTTAG
65 GGATTTAGTAACTTAG
60556206 CACAAA-GCCTTCGGGACTTAG
1 CACAAATGCCTTC-GGACTTAG
60556227 CCCAGACATC
Statistics
Matches: 97, Mismatches: 1, Indels: 8
0.92 0.01 0.08
Matches are distributed among these distances:
79 3 0.03
80 83 0.86
81 11 0.11
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (80 bp):
CACAAATGCCTTCGGACTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
GATTTAGTAACTTAG
Found at i:60561765 original size:40 final size:40
Alignment explanation
Indices: 60561692--60561888 Score: 267
Period size: 40 Copynumber: 5.0 Consensus size: 40
60561682 TCGAATGATG
* *
60561692 TCCGGGCTAAG-TCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTG-TGAGTTACTAAA
*
60561731 TCCGGACTAAGATCCGAAGGCAATTGTGTGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAA
60561771 TCCGGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAA
* *
60561811 TCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAA
* * *
60561851 TCCGGGA-GAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTA
60561889 TAACCGGGCT
Statistics
Matches: 145, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 11 0.08
40 127 0.88
41 7 0.05
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAA
Found at i:60561896 original size:40 final size:40
Alignment explanation
Indices: 60561700--60561916 Score: 155
Period size: 40 Copynumber: 5.5 Consensus size: 40
60561690 TGTCCGGGCT
* * *
60561700 AAGT-CCGAAGGC-TTTGTGCTAAGTTACTAAATCC-GGACT
1 AAGTCCCGAAGGCATTTGTGC-GAGCTACTAAATCCGGGA-G
* * * *
60561739 AAGAT-CCGAAGGCAATTGTGTGAGTTACTAAATCC-GGACT
1 AAG-TCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGGA-G
* * * *
60561779 AAGAT-CCGAAGGCATTTGTGTGAGTTACTAAATCC-AGACT
1 AAG-TCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGGA-G
*
60561819 AAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGAG
1 AAG-TCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGGAG
**
60561859 AAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCT
1 AAGTCCCGAAGGCATTTGTGCGAGCTACTA-AATCCGGGAG
* *
60561899 ATGTCCCGAAGGTATTTG
1 AAGTCCCGAAGGCATTTG
60561917 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 4 0.03
40 147 0.92
41 9 0.06
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (40 bp):
AAGTCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGGAG
Found at i:60561923 original size:80 final size:80
Alignment explanation
Indices: 60561703--60561923 Score: 218
Period size: 80 Copynumber: 2.8 Consensus size: 80
60561693 CCGGGCTAAG
* * * * ***
60561703 TCCGAAGGC-TTTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCAATTGTGTGAGTTAC
1 TCCGAAGGCATTTGTGC-GAGCTACTAAATCCAGACTAAGATCCGAAGGCATTTGAACGAGTTAC
*
60561767 TAAATCCGGACTAAGA
65 TAAATCCGGACGAAGA
* * **
60561783 TCCGAAGGCATTTGTGTGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 TCCGAAGGCATTTGTGCGAGCTACTAAATCCAGACTAAGATCCGAAGGCATTTGAACGAGTTACT
60561848 AAATCCGGGA-GAAG-
66 AAATCC-GGACGAAGA
* * * *
60561862 TCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGT
1 T-CCGAAGGCATTTGTGCGAGCTACTA-AATCCAGACTAAGAT-CCGAAGGCATTTGAACGAGT
60561924 AGCTATATCC
Statistics
Matches: 122, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
79 2 0.02
80 109 0.89
81 11 0.09
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGAAGGCATTTGTGCGAGCTACTAAATCCAGACTAAGATCCGAAGGCATTTGAACGAGTTACT
AAATCCGGACGAAGA
Found at i:60564490 original size:37 final size:37
Alignment explanation
Indices: 60564423--60564531 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
60564413 AGCTCAGACG
* * * *
60564423 AAATCTCCACACGAAGTTATCAGGTTTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
60564460 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
60564497 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
60564532 ATATATTTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:60564735 original size:50 final size:48
Alignment explanation
Indices: 60564677--60564820 Score: 182
Period size: 50 Copynumber: 2.9 Consensus size: 48
60564667 ACACATCGCC
60564677 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA-CATATCTCATA
1 TACATATTTCACA-TAGCCATTCGGCTTTACCACATATAGCATATCTC--A
* * *
60564727 TATATATTTCACATTGACCATTCGGCTTTACCATATATATGCATATCTCA
1 TACATATTTCACATAG-CCATTCGGCTTTACCACATATA-GCATATCTCA
*
60564777 TACATATTTCACATTCGCCATTCGGCTTTACCACATATATGCAT
1 TACATATTTCACA-TAGCCATTCGGCTTTACCACATATA-GCAT
60564821 GTTCATATTC
Statistics
Matches: 84, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
49 2 0.02
50 72 0.86
51 2 0.02
52 8 0.10
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATAGCCATTCGGCTTTACCACATATAGCATATCTCA
Found at i:60564859 original size:47 final size:47
Alignment explanation
Indices: 60564785--60564928 Score: 200
Period size: 47 Copynumber: 3.1 Consensus size: 47
60564775 CATACATATT
* * *
60564785 TCACATTC-GCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACA-TCGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
60564832 TCACATCGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATCGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
60564879 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATCGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
60564926 TCA
1 TCA
60564929 AATAAAATCC
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
46 2 0.02
47 86 0.98
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATCGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:60568438 original size:34 final size:33
Alignment explanation
Indices: 60568400--60568465 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
60568390 AGTAACAGTC
*
60568400 CAATAACAGT-TAGGGCTTTAGCCCAATACAGTAT
1 CAATAACAGTGT--GGCCTTAGCCCAATACAGTAT
* *
60568434 CAATAGCAGTGTGGCCTTAGCCCATTACAGTA
1 CAATAACAGTGTGGCCTTAGCCCAATACAGTA
60568466 ATAGTAACAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 18 0.64
34 9 0.32
35 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.26
Consensus pattern (33 bp):
CAATAACAGTGTGGCCTTAGCCCAATACAGTAT
Found at i:60576362 original size:22 final size:22
Alignment explanation
Indices: 60576326--60576390 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
60576316 GCAAATACGT
60576326 TTGGCACACAA-CCATAATCAGG
1 TTGGCACA-AAGCCATAATCAGG
* * *
60576348 TTGGCATAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
60576370 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
60576391 AATAATTGGC
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
21 3 0.09
22 28 0.85
23 2 0.06
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:60576591 original size:41 final size:40
Alignment explanation
Indices: 60576530--60576654 Score: 169
Period size: 41 Copynumber: 3.0 Consensus size: 40
60576520 CTTAAAAGCT
*
60576530 ATCGGTGGATCCACGATCGTCAAGCAACCATGAAATCCTTA
1 ATCGGTGGATCCACG-TCGTCAAGCAACCATGAAATCCTCA
* *
60576571 ATCGGTGGATCCACAGTCGTCAAGCAACCATGCAATTCTCA
1 ATCGGTGGATCCAC-GTCGTCAAGCAACCATGAAATCCTCA
* **
60576612 ATCAGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
1 ATCGGTGGATCCAC-GTCGTCAAGCAACCATGAAATCCTCA
60576653 AT
1 AT
60576655 TTCTTCCTCT
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
41 75 0.99
42 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (40 bp):
ATCGGTGGATCCACGTCGTCAAGCAACCATGAAATCCTCA
Found at i:60577079 original size:27 final size:27
Alignment explanation
Indices: 60576892--60577142 Score: 139
Period size: 27 Copynumber: 9.3 Consensus size: 27
60576882 TTTCACCCTA
* * * * *
60576892 CAAGGGTGTTTCGATAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
** * *
60576919 CAAGGGTATTTCAATAATTTTGCAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * *
60576946 CAATGGTATTTCTGTAACTTTTGA-AAGT
1 CAAGGGTATTTCGGTAA-TTTT-ACAAAT
* ** *
60576974 CCAGGGTATTTCTATAATTTTCCAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * *
60577001 CAAGGGTATATCAGTAATTTTCCAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
60577028 TAGGGGTATATT-GGTAATTTTACAAAT
1 CAAGGGTAT-TTCGGTAATTTTACAAAT
* * *
60577055 CGAGGGTATTTCGGTAATTTAACAAGT
1 CAAGGGTATTTCGGTAATTTTACAAAT
** * * ***
60577082 CAACAGTATTTAGGGAATTTTACAGGC
1 CAAGGGTATTTCGGTAATTTTACAAAT
* ** *
60577109 CAAGGATATTTCTATAATTTCACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
60577136 C-AGGGTA
1 CAAGGGTA
60577143 ATTTTGCTAA
Statistics
Matches: 169, Mismatches: 50, Indels: 11
0.73 0.22 0.05
Matches are distributed among these distances:
26 7 0.04
27 141 0.83
28 21 0.12
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.35
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAT
Found at i:60577164 original size:18 final size:19
Alignment explanation
Indices: 60577137--60577172 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
60577127 TTCACAAATC
60577137 AGGGTAATTTTGCTAATTG
1 AGGGTAATTTTGCTAATTG
*
60577156 AGGGT-ATTTTGGTAATT
1 AGGGTAATTTTGCTAATT
60577173 TTGTAAACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.25, C:0.03, G:0.28, T:0.44
Consensus pattern (19 bp):
AGGGTAATTTTGCTAATTG
Found at i:60577186 original size:27 final size:27
Alignment explanation
Indices: 60577156--60577225 Score: 115
Period size: 26 Copynumber: 2.6 Consensus size: 27
60577146 TTGCTAATTG
*
60577156 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTGTAAACCA
60577183 AGGGTA-TTTAGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTGTAAACCA
*
60577209 AGGGTATTTCAGTAATT
1 AGGGTATTTTAGTAATT
60577226 CTATCCTACA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
26 25 0.62
27 15 0.38
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTGTAAACCA
Found at i:60577244 original size:27 final size:27
Alignment explanation
Indices: 60577214--60577317 Score: 136
Period size: 27 Copynumber: 3.9 Consensus size: 27
60577204 AACCAAGGGT
60577214 ATTTCAGTAATTCTATCCTACAGGGGC
1 ATTTCAGTAATTCTATCCTACAGGGGC
*
60577241 ATTTCAGTAATTCTATCTTACAGGGGC
1 ATTTCAGTAATTCTATCCTACAGGGGC
* * * * *
60577268 ATTTCAGTAATTCGACCCTATAGAGGT
1 ATTTCAGTAATTCTATCCTACAGGGGC
* *
60577295 ATTTCAGTAATACTAGCCTACAG
1 ATTTCAGTAATTCTATCCTACAG
60577318 ATATGAGATT
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (27 bp):
ATTTCAGTAATTCTATCCTACAGGGGC
Found at i:60580316 original size:22 final size:22
Alignment explanation
Indices: 60580291--60580355 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
60580281 GTAAATACAT
* *
60580291 TTGGCACACAGCAATAATTAGG
1 TTGGCACAAAGCCATAATTAGG
*
60580313 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-TAGG
*
60580335 TTGGCGCAAAGCCATAATTAG
1 TTGGCACAAAGCCATAATTAG
60580356 AATAATTGGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.23
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATTAGG
Found at i:60580554 original size:41 final size:41
Alignment explanation
Indices: 60580497--60580619 Score: 192
Period size: 41 Copynumber: 3.0 Consensus size: 41
60580487 TAAAAGCCAC
* *
60580497 CGGTGGATCCAAGGTCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
60580538 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
* * **
60580579 CAGTGGATTCACGGTCACCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
60580620 TTCTTCCTCC
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
Found at i:60580895 original size:27 final size:27
Alignment explanation
Indices: 60580864--60580920 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
60580854 ACAAAGGTGT
*
60580864 TTTTGGTAAATCTACAAACCAAGGGTA
1 TTTTGATAAATCTACAAACCAAGGGTA
* * * *
60580891 TTTTGATAATTTTGCAAACCAATGGTA
1 TTTTGATAAATCTACAAACCAAGGGTA
60580918 TTT
1 TTT
60580921 CTGTAATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (27 bp):
TTTTGATAAATCTACAAACCAAGGGTA
Found at i:60581055 original size:27 final size:27
Alignment explanation
Indices: 60580876--60581145 Score: 147
Period size: 27 Copynumber: 10.0 Consensus size: 27
60580866 TTGGTAAATC
*
60580876 TACAAACCAAGGGTATTTTGATAATTT
1 TACAAATCAAGGGTATTTTGATAATTT
* * *
60580903 TGCAAACCAATGGTATTTCTG-TAATTT
1 TACAAATCAAGGGTATTT-TGATAATTT
** *
60580930 TTGAAAGTTAAGGGTATTTATG-TAATTT
1 TACAAA-TCAAGGGTATTT-TGATAATTT
** * * *
60580958 TGTAAGTTAGGGGTATTTTTG-TAAATTT
1 TACAAATCAAGGGTA-TTTTGAT-AATTT
* *
60580986 T-CAAATCAAGGGTATTTCGATATTTT
1 TACAAATCAAGGGTATTTTGATAATTT
* *
60581012 TCCAAAT-TAGGGTTATTTTGATAATTT
1 TACAAATCAAGGG-TATTTTGATAATTT
* * * *
60581039 TATAAATCGAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTTGATAATTT
* * * *
60581066 AACAAGTCGAGGGTGTTTCT-ATAATTT
1 TACAAATCAAGGGTATTT-TGATAATTT
** * *
60581093 TACAGGTCAAGGGTATTTAGGTAATTT
1 TACAAATCAAGGGTATTTTGATAATTT
* * * *
60581120 CACAAATTAGGGGTATTTTGCTAATT
1 TACAAATCAAGGGTATTTTGATAATT
60581146 AAGGGTATTT
Statistics
Matches: 188, Mismatches: 45, Indels: 20
0.74 0.18 0.08
Matches are distributed among these distances:
26 13 0.07
27 140 0.74
28 35 0.19
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTTGATAATTT
Found at i:60581145 original size:18 final size:18
Alignment explanation
Indices: 60581124--60581163 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
60581114 TAATTTCACA
*
60581124 AATTAGGGGTATTTTGCT
1 AATTAAGGGTATTTTGCT
*
60581142 AATTAAGGGTATTTTGGT
1 AATTAAGGGTATTTTGCT
60581160 AATT
1 AATT
60581164 TTGTAAATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.28, C:0.03, G:0.25, T:0.45
Consensus pattern (18 bp):
AATTAAGGGTATTTTGCT
Found at i:60581145 original size:54 final size:54
Alignment explanation
Indices: 60580939--60581145 Score: 163
Period size: 54 Copynumber: 3.8 Consensus size: 54
60580929 TTTGAAAGTT
* *** *
60580939 AAGGGTATTTATGTAATTTTGTAAGTTAGGGGTATTTTTG-TAAATTTT-CAAATC
1 AAGGGTATTTAGGTAATTTCACAAATTAGGGGTA-TTTTGAT-AATTTTACAAATC
* * * * *
60580993 AAGGGTATTTCGATATTTTTC-CAAATTAGGGTTATTTTGATAATTTTATAAATC
1 AAGGGTATTTAGGTA-ATTTCACAAATTAGGGGTATTTTGATAATTTTACAAATC
* * * * * * **
60581047 GAGGGTATTTCGGTAATTTAACAAGTCGAGGGTGT-TTCT-ATAATTTTACAGGTC
1 AAGGGTATTTAGGTAATTTCACAAAT-TAGGG-GTATTTTGATAATTTTACAAATC
*
60581101 AAGGGTATTTAGGTAATTTCACAAATTAGGGGTATTTTGCTAATT
1 AAGGGTATTTAGGTAATTTCACAAATTAGGGGTATTTTGATAATT
60581146 AAGGGTATTT
Statistics
Matches: 118, Mismatches: 27, Indels: 16
0.73 0.17 0.10
Matches are distributed among these distances:
52 2 0.02
53 21 0.18
54 84 0.71
55 10 0.08
56 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (54 bp):
AAGGGTATTTAGGTAATTTCACAAATTAGGGGTATTTTGATAATTTTACAAATC
Found at i:60581193 original size:26 final size:26
Alignment explanation
Indices: 60581146--60581208 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
60581136 TTTGCTAATT
* *
60581146 AAGGGTATTTTGGTAATTTTGTAAATC
1 AAGGGTA-TTTAGTAATTTTGTAAACC
60581173 AAGGGTATTTAGTAATTTTGTAAACC
1 AAGGGTATTTAGTAATTTTGTAAACC
60581199 AAGGGTATTT
1 AAGGGTATTT
60581209 CATAAATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 27 0.79
27 7 0.21
ACGTcount: A:0.32, C:0.05, G:0.22, T:0.41
Consensus pattern (26 bp):
AAGGGTATTTAGTAATTTTGTAAACC
Found at i:60581235 original size:27 final size:27
Alignment explanation
Indices: 60581205--60581308 Score: 129
Period size: 27 Copynumber: 3.9 Consensus size: 27
60581195 AACCAAGGGT
60581205 ATTTCA-TAAATTCTACCCTACAGGGGC
1 ATTTCAGT-AATTCTACCCTACAGGGGC
* * *
60581232 ATTTCAATAATTCTATCCTATAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
60581259 ATTTCAGTAATTTTACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
60581286 ATTTCAGTAATACTAGCCTACAG
1 ATTTCAGTAATTCTACCCTACAG
60581309 ATATGAGATT
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
27 65 0.98
28 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:60584270 original size:22 final size:23
Alignment explanation
Indices: 60584242--60584303 Score: 83
Period size: 22 Copynumber: 2.8 Consensus size: 23
60584232 GCAAATACGT
*
60584242 TTGGCACACAGCCATAAT-TAGG
1 TTGGCACAAAGCCATAATGTAGG
*
60584264 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGTAGG
*
60584286 TTGGCGCAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
60584304 CAGAATAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.23
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGTAGG
Found at i:60584505 original size:41 final size:41
Alignment explanation
Indices: 60584448--60584570 Score: 192
Period size: 41 Copynumber: 3.0 Consensus size: 41
60584438 AAAAATCCAC
*
60584448 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
60584489 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
* * * * *
60584530 CGGTAGATCCACAGTCTTTAAGCAACCATGTGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
60584571 TTCTTCCTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 76 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
Found at i:60584859 original size:27 final size:27
Alignment explanation
Indices: 60584826--60585061 Score: 190
Period size: 27 Copynumber: 8.7 Consensus size: 27
60584816 ATTACAAACT
*
60584826 AAGGGTATTTTGGTAATTTTGCAAACC
1 AAGGGTATTTTGGTAATTTTGCAAATC
* *
60584853 AATGGTATTTTTGTAATTTTTG-AAAGTC
1 AAGGGTATTTTGGTAA-TTTTGCAAA-TC
* *
60584881 AAGGGTATTTTTGTAATTTTGTAAATC
1 AAGGGTATTTTGGTAATTTTGCAAATC
*
60584908 AGGGGTATTTCT-GTAATTTT-CTAAATC
1 AAGGGTATTT-TGGTAATTTTGC-AAATC
* * * *
60584935 AAGGGTATTTCGATAATTTTCCAAATT
1 AAGGGTATTTTGGTAATTTTGCAAATC
* **
60584962 AGGGGTATTTTGGTAATTTTATAAATC
1 AAGGGTATTTTGGTAATTTTGCAAATC
* * ** * *
60584989 AAGGGTATTTCGATAATTTAACAAGTT
1 AAGGGTATTTTGGTAATTTTGCAAATC
** ** **
60585016 AAGGGTATTTCAGTAATTTAACAGGTC
1 AAGGGTATTTTGGTAATTTTGCAAATC
60585043 AAGGGTATTTTGGTAATTT
1 AAGGGTATTTTGGTAATTT
60585062 CACAATTTAA
Statistics
Matches: 173, Mismatches: 29, Indels: 14
0.80 0.13 0.06
Matches are distributed among these distances:
27 147 0.85
28 26 0.15
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTGCAAATC
Found at i:60584887 original size:55 final size:54
Alignment explanation
Indices: 60584826--60585007 Score: 215
Period size: 54 Copynumber: 3.4 Consensus size: 54
60584816 ATTACAAACT
* * * **
60584826 AAGGGTATTTTGGTAATTTTGCAAACCAATGGTATTTTTGTAATTTT-TGAAAGTC
1 AAGGGTATTTCGATAATTTTGCAAATCAGGGGTATTTTTGTAATTTTAT-AAA-TC
* * * *
60584881 AAGGGTATTTTTG-TAATTTTGTAAATCAGGGGTATTTCTGTAATTTTCTAAATC
1 AAGGGTA-TTTCGATAATTTTGCAAATCAGGGGTATTTTTGTAATTTTATAAATC
* * *
60584935 AAGGGTATTTCGATAATTTTCCAAATTAGGGGTATTTTGGTAATTTTATAAATC
1 AAGGGTATTTCGATAATTTTGCAAATCAGGGGTATTTTTGTAATTTTATAAATC
60584989 AAGGGTATTTCGATAATTT
1 AAGGGTATTTCGATAATTT
60585008 AACAAGTTAA
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
53 4 0.04
54 63 0.56
55 39 0.35
56 6 0.05
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (54 bp):
AAGGGTATTTCGATAATTTTGCAAATCAGGGGTATTTTTGTAATTTTATAAATC
Found at i:60585020 original size:81 final size:81
Alignment explanation
Indices: 60584879--60585061 Score: 210
Period size: 81 Copynumber: 2.3 Consensus size: 81
60584869 TTTTTGAAAG
* * * *
60584879 TCAAGGGTATTTTTGTAATTTTGTAAATCAGGGGTATTTCTGTAATTTTCTAAATCAAGGGTATT
1 TCAAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTCTGTAATTTACTAAATCAAGGGTATT
**
60584944 TC-GATAATTTTCCAAA
66 TCAG-TAATTTAACAAA
* * * *
60584960 TTAGGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTC-GATAATTTAAC-AAGTTAAGGGTA
1 TCAAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTCTG-TAATTT-ACTAAATCAAGGGTA
**
60585023 TTTCAGTAATTTAACAGG
64 TTTCAGTAATTTAACAAA
60585041 TCAAGGGTATTTTGGTAATTT
1 TCAAGGGTATTTTGGTAATTT
60585062 CACAATTTAA
Statistics
Matches: 85, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
80 1 0.01
81 82 0.96
82 2 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.42
Consensus pattern (81 bp):
TCAAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTCTGTAATTTACTAAATCAAGGGTATT
TCAGTAATTTAACAAA
Found at i:60585045 original size:54 final size:54
Alignment explanation
Indices: 60584910--60585078 Score: 171
Period size: 54 Copynumber: 3.1 Consensus size: 54
60584900 TGTAAATCAG
* * ** *
60584910 GGGTATTTCTGTAATTT-TCTAAATCAAGGGTATTTCGATAATTTTCCAAATTAG
1 GGGTATTTCAGTAATTTAAC-AAATCAAGGGTATTTCGATAATTTAACAAATTAA
** * * *
60584964 GGGTATTTTGGTAATTTTATAAATCAAGGGTATTTCGATAATTTAACAAGTTAA
1 GGGTATTTCAGTAATTTAACAAATCAAGGGTATTTCGATAATTTAACAAATTAA
** * * * *
60585018 GGGTATTTCAGTAATTTAACAGGTCAAGGGTATTTTGGTAATTTCACAATTTAA
1 GGGTATTTCAGTAATTTAACAAATCAAGGGTATTTCGATAATTTAACAAATTAA
60585072 -GGTATTT
1 GGGTATTT
60585079 TGCTAATCGA
Statistics
Matches: 96, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
53 7 0.07
54 89 0.93
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTAACAAATCAAGGGTATTTCGATAATTTAACAAATTAA
Found at i:60585073 original size:27 final size:27
Alignment explanation
Indices: 60584910--60585078 Score: 135
Period size: 27 Copynumber: 6.3 Consensus size: 27
60584900 TGTAAATCAG
* * *
60584910 GGGTATTTCTGTAATTT-TCTAAATCAA
1 GGGTATTTCGGTAATTTAAC-AAATTAA
* ** *
60584937 GGGTATTTCGATAATTTTCCAAATTAG
1 GGGTATTTCGGTAATTTAACAAATTAA
* * * *
60584964 GGGTATTTTGGTAATTTTATAAATCAA
1 GGGTATTTCGGTAATTTAACAAATTAA
* *
60584991 GGGTATTTCGATAATTTAACAAGTTAA
1 GGGTATTTCGGTAATTTAACAAATTAA
* ** *
60585018 GGGTATTTCAGTAATTTAACAGGTCAA
1 GGGTATTTCGGTAATTTAACAAATTAA
* * *
60585045 GGGTATTTTGGTAATTTCACAATTTAA
1 GGGTATTTCGGTAATTTAACAAATTAA
60585072 -GGTATTT
1 GGGTATTT
60585079 TGCTAATCGA
Statistics
Matches: 114, Mismatches: 27, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
26 7 0.06
27 106 0.93
28 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTAACAAATTAA
Found at i:60585119 original size:27 final size:26
Alignment explanation
Indices: 60585088--60585156 Score: 77
Period size: 25 Copynumber: 2.6 Consensus size: 26
60585078 TTGCTAATCG
60585088 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTT-GTAATTTTGTAAACCA
* * *
60585115 GGGGT-TTTAGTAATTTTTTAAACCA
1 AGGGTATTTTGTAATTTTGTAAACCA
*
60585140 AGAGTATTTCTGTAATT
1 AGGGTATTT-TGTAATT
60585157 CTACCCTACA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
25 18 0.53
26 6 0.18
27 10 0.29
ACGTcount: A:0.29, C:0.07, G:0.20, T:0.43
Consensus pattern (26 bp):
AGGGTATTTTGTAATTTTGTAAACCA
Found at i:60585175 original size:27 final size:27
Alignment explanation
Indices: 60585151--60585236 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 27
60585141 GAGTATTTCT
60585151 GTAATTCTACCCTACAGGGGCATTTTA
1 GTAATTCTACCCTACAGGGGCATTTTA
* *
60585178 GTAATTCTATCCTATAGGGGCATTTTA
1 GTAATTCTACCCTACAGGGGCATTTTA
* * * *
60585205 GTAATTCTACCATACAGGAGTATTTCA
1 GTAATTCTACCCTACAGGGGCATTTTA
60585232 GTAAT
1 GTAAT
60585237 ACTAGCTTAC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGCATTTTA
Found at i:60589122 original size:40 final size:40
Alignment explanation
Indices: 60589075--60589193 Score: 184
Period size: 40 Copynumber: 3.0 Consensus size: 40
60589065 CCGAATATAG
*
60589075 TACCAGCACTAAGCCTGCGGGATTTAACCCGGATATACTT
1 TACCAGCACTAAGCCTGCGGGATTTAACCCGGATATACAT
* * * *
60589115 TACCAGCACGAAGCTTGCGGGATCTAACCCGGATATGCAT
1 TACCAGCACTAAGCCTGCGGGATTTAACCCGGATATACAT
*
60589155 TACCAGCACTAAGCCTGCGGAATTTAACCCGGATATACA
1 TACCAGCACTAAGCCTGCGGGATTTAACCCGGATATACA
60589194 ATATATCGAG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 69 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (40 bp):
TACCAGCACTAAGCCTGCGGGATTTAACCCGGATATACAT
Found at i:60605581 original size:28 final size:27
Alignment explanation
Indices: 60605518--60605587 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
60605508 ATAGTGAGTC
*
60605518 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
60605545 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
60605573 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60605588 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:60607255 original size:46 final size:45
Alignment explanation
Indices: 60607188--60607362 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
60607178 TGTAACCCGC
* * *
60607188 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGGC-TTAGCAT
* *
60607234 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGG--GCTTAGCAT
* ** * * * *
60607280 ACATTTCACGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
1 CCA-TAAATGAACTCGGACTCAACTCAACGAGTTCGGGC-TTAGCAT
* *
60607327 CCATAAGTGAACTCGGACTCAACTCAACGCGTTCGG
1 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGG
60607363 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 66 0.64
47 34 0.33
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGGCTTAGCAT
Found at i:60607311 original size:93 final size:93
Alignment explanation
Indices: 60607196--60607366 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
60607186 GCCCATAAGT
* * *
60607196 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
60607261 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
60607289 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
60607354 CGCGTTCGGATGC
66 CGAGTTCGGATGC
60607367 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:60607820 original size:30 final size:30
Alignment explanation
Indices: 60607786--60607845 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
60607776 ATTTAATACG
60607786 AACTTTTAAAAAATTACACTTTTACCCCTA
1 AACTTTTAAAAAATTACACTTTTACCCCTA
** * *
60607816 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTTAAAAAATTACACTTTTACCCCTA
60607846 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.38
Consensus pattern (30 bp):
AACTTTTAAAAAATTACACTTTTACCCCTA
Found at i:60614743 original size:46 final size:46
Alignment explanation
Indices: 60614676--60614849 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 46
60614666 TGTAACCCGC
* *
60614676 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCATTCGAAT
1 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGAGCATTCGAAT
* * *
60614722 CCATAAATGAACTCGGACTCAACTCAACGAGTTCG-G-ATGCCTAGTT
1 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGAGCAT-TCGA-AT
* ** * * *
60614768 ACATTTCACGAACTCGGACTCAACTCAACGAGTTC-AGACATTTGCAT
1 CCA-TAAATGAACTCGGACTCAACTCAACGAGTTCGAG-CATTCGAAT
* *
60614815 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCG
1 CCATAAATGAACTCGGACTCAACTCAACGAGTTCG
60614850 GATGCTCAAC
Statistics
Matches: 101, Mismatches: 20, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
44 2 0.02
45 3 0.03
46 62 0.61
47 32 0.32
49 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (46 bp):
CCATAAATGAACTCGGACTCAACTCAACGAGTTCGAGCATTCGAAT
Found at i:60614793 original size:93 final size:93
Alignment explanation
Indices: 60614684--60614854 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
60614674 GCCCATAAGT
60614684 GAACTCGGACTCAACTCAACGAGCTC-GAGCATTCGAATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCAGA-CATTCGAATCCATAAATGAACTCGGACTCAACTCA
60614748 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
* * * *
60614777 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGAATCCATAAATGAACTCGGACTCAACTCAA
*
60614842 TGAGTTCGGATGC
66 CGAGTTCGGATGC
60614855 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 70 0.97
94 2 0.03
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGAATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:60615308 original size:30 final size:30
Alignment explanation
Indices: 60615274--60615333 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
60615264 ATTTAATACG
60615274 AACTTTTAAAAAATTACACTTTTGCCCCTA
1 AACTTTTAAAAAATTACACTTTTGCCCCTA
** *
60615304 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTTAAAAAATTACACTTTTGCCCCTA
60615334 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.38
Consensus pattern (30 bp):
AACTTTTAAAAAATTACACTTTTGCCCCTA
Found at i:60622444 original size:43 final size:43
Alignment explanation
Indices: 60622376--60622573 Score: 297
Period size: 43 Copynumber: 4.6 Consensus size: 43
60622366 CCGGCATTAC
* *
60622376 GCCTGCTAGGCACGAAGGTCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
**
60622419 GCCTGCTAGGCACGAAGGCTTGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
60622462 GCCTGCTATGCACGAAGGCCCGAATACACATCACAGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * * *
60622505 GCCTGTTAGGCACGAAGGCCCGAATGCACATCACCAGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
60622548 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
60622574 TAATACCAGC
Statistics
Matches: 139, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 139 1.00
ACGTcount: A:0.30, C:0.31, G:0.25, T:0.14
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:60622622 original size:38 final size:38
Alignment explanation
Indices: 60622566--60622640 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
60622556 GGCACGAAGG
* *
60622566 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAT
*
60622604 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTA
60622641 AGCCAAATAC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAT
Found at i:60626897 original size:43 final size:42
Alignment explanation
Indices: 60626849--60626979 Score: 176
Period size: 43 Copynumber: 3.1 Consensus size: 42
60626839 CCGGCATTAC
*
60626849 GCCTGCTAGGCACGAAGGCCAGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCC-GAATACACATCACCGACACGAA
*
60626892 GCCTGCTAGGCACGAAGGCTCGAATACACATCACCGACACTAA
1 GCCTGCTAGGCACGAAGGC-CGAATACACATCACCGACACGAA
* * *
60626935 GCCTGCTAGGCACGAAGGCCCAAATATA-AT-ACCAACACGAA
1 GCCTGCTAGGCACGAAGG-CCGAATACACATCACCGACACGAA
60626976 GCCT
1 GCCT
60626980 ACGGGATTTA
Statistics
Matches: 80, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
41 13 0.16
42 2 0.03
43 63 0.79
44 2 0.03
ACGTcount: A:0.34, C:0.32, G:0.22, T:0.12
Consensus pattern (42 bp):
GCCTGCTAGGCACGAAGGCCGAATACACATCACCGACACGAA
Found at i:60635793 original size:12 final size:12
Alignment explanation
Indices: 60635776--60635801 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
60635766 AAACATCAAG
60635776 TGCCTTCAGGTT
1 TGCCTTCAGGTT
60635788 TGCCTTCAGGTT
1 TGCCTTCAGGTT
60635800 TG
1 TG
60635802 TTATAGCCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.23, G:0.27, T:0.42
Consensus pattern (12 bp):
TGCCTTCAGGTT
Found at i:60644367 original size:29 final size:29
Alignment explanation
Indices: 60644332--60644405 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
60644322 GTTGTGAGAT
* *
60644332 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
60644361 TGGCACTAAATGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
60644390 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60644406 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:60649535 original size:13 final size:13
Alignment explanation
Indices: 60649519--60649551 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
60649509 TTTAATTAAA
*
60649519 TTAGTTAATTAGT
1 TTAGATAATTAGT
60649532 TTAGATAATTAGT
1 TTAGATAATTAGT
60649545 TTA-ATAA
1 TTAGATAA
60649552 ACGAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:60650501 original size:18 final size:16
Alignment explanation
Indices: 60650478--60650534 Score: 55
Period size: 18 Copynumber: 3.4 Consensus size: 16
60650468 TAAATCCTCC
60650478 TATTTTTTTATGTATTCT
1 TATTTTTTTAT-TATT-T
*
60650496 TATTTTTATTCTTATTT
1 TATTTTT-TTATTATTT
60650513 TATTTATTTTA-T-TTT
1 TATTT-TTTTATTATTT
60650528 TATTTTT
1 TATTTTT
60650535 CTTTTGATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
14 2 0.06
15 8 0.23
16 1 0.03
17 8 0.23
18 13 0.37
19 3 0.09
ACGTcount: A:0.18, C:0.04, G:0.02, T:0.77
Consensus pattern (16 bp):
TATTTTTTTATTATTT
Found at i:60650505 original size:12 final size:11
Alignment explanation
Indices: 60650490--60650576 Score: 63
Period size: 12 Copynumber: 7.5 Consensus size: 11
60650480 TTTTTTTATG
60650490 TATTCTTATTTT
1 TATT-TTATTTT
60650502 TATTCTTA-TTT
1 TATT-TTATTTT
60650513 TA-TTTA-TTT
1 TATTTTATTTT
60650522 TATTTTTATTTT
1 TA-TTTTATTTT
*
60650534 TCTTTTGATTTT
1 TATTTT-ATTTT
*
60650546 TATTTTCATTTC
1 TATTTT-ATTTT
*
60650558 AATTTTATTATTT
1 TATTTTA-T-TTT
60650571 TATTTT
1 TATTTT
60650577 GAAAGACATA
Statistics
Matches: 62, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
9 8 0.13
10 1 0.02
11 14 0.23
12 32 0.52
13 7 0.11
ACGTcount: A:0.18, C:0.06, G:0.01, T:0.75
Consensus pattern (11 bp):
TATTTTATTTT
Found at i:60650517 original size:5 final size:5
Alignment explanation
Indices: 60650499--60650576 Score: 54
Period size: 5 Copynumber: 14.8 Consensus size: 5
60650489 GTATTCTTAT
*
60650499 TTTTA TTCTTA TTTTA -TTTA TTTTA TTTTTA TTTTTC TTTTGA TTTTTA
1 TTTTA TT-TTA TTTTA TTTTA TTTTA -TTTTA -TTTTA TTTT-A -TTTTA
*
60650548 TTTTCA TTTCAA TTTTA --TTA TTTTA TTTT
1 TTTT-A TTT-TA TTTTA TTTTA TTTTA TTTT
60650577 GAAAGACATA
Statistics
Matches: 60, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
3 3 0.05
4 4 0.07
5 25 0.42
6 24 0.40
7 4 0.07
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:60650546 original size:7 final size:6
Alignment explanation
Indices: 60650490--60650556 Score: 62
Period size: 6 Copynumber: 10.8 Consensus size: 6
60650480 TTTTTTTATG
* * * *
60650490 TATTCT TATTTT TATTCT TATTTT ATTTATTT TATTTT TATTTT TCTTTT
1 TATTTT TATTTT TATTTT TATTTT -TAT-TTT TATTTT TATTTT TATTTT
* *
60650540 GATTTT TATTTT CATTT
1 TATTTT TATTTT TATTT
60650557 CAATTTTATT
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
6 42 0.86
7 4 0.08
8 3 0.06
ACGTcount: A:0.16, C:0.06, G:0.01, T:0.76
Consensus pattern (6 bp):
TATTTT
Found at i:60654326 original size:29 final size:29
Alignment explanation
Indices: 60654235--60654337 Score: 134
Period size: 29 Copynumber: 3.6 Consensus size: 29
60654225 GTGACGAGAT
*
60654235 TGGCACTAAGTGTGCGTGCTAGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
60654264 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
60654293 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
60654322 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
60654338 AGTTCGGAGG
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:60662687 original size:71 final size:71
Alignment explanation
Indices: 60662603--60662766 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
60662593 CGATTTGTCT
60662603 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
60662668 CTTTCA
66 CTTTCA
60662674 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
60662739 CTTTCA
66 CTTTCA
60662745 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
60662767 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:60662804 original size:71 final size:70
Alignment explanation
Indices: 60662603--60662800 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
60662593 CGATTTGTCT
* * * *
60662603 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
60662668 CTTTCA
65 CTTTCA
* * * *
60662674 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
60662739 CTTTCA
65 CTTTCA
* *
60662745 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
60662801 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:60667240 original size:24 final size:24
Alignment explanation
Indices: 60667213--60667373 Score: 234
Period size: 24 Copynumber: 6.6 Consensus size: 24
60667203 CTTATTATGT
* * *
60667213 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
60667237 TCGCACACGTAATAGTG-CATAGTAAA
1 TCGCACAC---ATAGTGCCATAGTAAA
60667263 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
60667287 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
60667311 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
60667335 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
60667359 TCGCACACATAGTGC
1 TCGCACACATAGTGC
60667374 ATTTGAGATA
Statistics
Matches: 129, Mismatches: 4, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
23 6 0.05
24 103 0.80
26 15 0.12
27 5 0.04
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:60674930 original size:24 final size:24
Alignment explanation
Indices: 60674903--60675061 Score: 228
Period size: 24 Copynumber: 6.6 Consensus size: 24
60674893 CTTATTATGT
* * *
60674903 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
60674927 TCGCACACGTAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
60674951 TCGCACACTTAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
60674975 TCGCACACTTAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
60674999 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
60675023 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
60675047 TCGCACACATAGTGC
1 TCGCACACATAGTGC
60675062 ACTTGAGATA
Statistics
Matches: 128, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 128 1.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.22
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:60674940 original size:48 final size:47
Alignment explanation
Indices: 60674881--60675061 Score: 179
Period size: 48 Copynumber: 3.8 Consensus size: 47
60674871 ACCGAATGTG
* * * *
60674881 GCACACATAGTGCTTATTATGTTCGCACACATAGAGCTATAGCAAATC
1 GCACACATAGTGCTTA-TATGATCGCACACATAGTGCCATAGTAAATC
* * *
60674929 GCACACGTAGTGC-TATAGTAAATCGCACACTTAGTGCCATAGTAAATC
1 GCACACATAGTGCTTATA-T-GATCGCACACATAGTGCCATAGTAAATC
* * *
60674977 GCACACTTAGTGC-CATAGTGAATCGCACACATAGTGCCATAGTGAATC
1 GCACACATAGTGCTTATA-TG-ATCGCACACATAGTGCCATAGTAAATC
*
60675025 GCACACATAGTGC-CATAGTGAATCGCACACATAGTGC
1 GCACACATAGTGCTTATA-TG-ATCGCACACATAGTGC
60675062 ACTTGAGATA
Statistics
Matches: 117, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
46 2 0.02
47 3 0.03
48 112 0.96
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (47 bp):
GCACACATAGTGCTTATATGATCGCACACATAGTGCCATAGTAAATC
Found at i:60676551 original size:28 final size:28
Alignment explanation
Indices: 60676486--60676586 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
60676476 ATAGTGAATC
*
60676486 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
60676515 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
60676543 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
60676573 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60676587 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:60680616 original size:29 final size:28
Alignment explanation
Indices: 60680574--60680634 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
60680564 GTGAGCATGA
* *
60680574 ATATAAGGTGATTTGGGTCTAACGGGCC
1 ATATAAGGTGATTTGGGCCTAACAGGCC
*
60680602 ATATAAAGGTGATTTGGGCCTAATAGGCC
1 ATAT-AAGGTGATTTGGGCCTAACAGGCC
60680631 ATAT
1 ATAT
60680635 GAATATGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 4 0.14
29 25 0.86
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.30
Consensus pattern (28 bp):
ATATAAGGTGATTTGGGCCTAACAGGCC
Found at i:60680697 original size:29 final size:29
Alignment explanation
Indices: 60680600--60680697 Score: 99
Period size: 29 Copynumber: 3.4 Consensus size: 29
60680590 GTCTAACGGG
* * * *
60680600 CCATATAAAGGTGATTTGGGCCTAATAGG-
1 CCATATGAATGTGAATTGGGCCTGAT-GGA
* *
60680629 CCATATGAATATGAATTGGGCCTGATGGG
1 CCATATGAATGTGAATTGGGCCTGATGGA
* * *
60680658 CTATATGAATGTGACTTGGGCTTGATGGA
1 CCATATGAATGTGAATTGGGCCTGATGGA
60680687 CCATATGAATG
1 CCATATGAATG
60680698 AGATGGGCCA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.04
29 55 0.96
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.30
Consensus pattern (29 bp):
CCATATGAATGTGAATTGGGCCTGATGGA
Found at i:60682827 original size:15 final size:15
Alignment explanation
Indices: 60682803--60682834 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
60682793 CTAATTAGCA
60682803 TAAAAAGTTTAGACT
1 TAAAAAGTTTAGACT
*
60682818 TAAAATGTTTAGACT
1 TAAAAAGTTTAGACT
60682833 TA
1 TA
60682835 GTCTTTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (15 bp):
TAAAAAGTTTAGACT
Found at i:60683010 original size:29 final size:29
Alignment explanation
Indices: 60682975--60683035 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
60682965 GTTTTTATAT
60682975 TTTGATTTTCAATTATTTCTAAACCATAG
1 TTTGATTTTCAATTATTTCTAAACCATAG
60683004 TTTGATTTTCAATTATTTCTAAACCATAG
1 TTTGATTTTCAATTATTTCTAAACCATAG
60683033 TTT
1 TTT
60683036 TTATATACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.30, C:0.13, G:0.07, T:0.51
Consensus pattern (29 bp):
TTTGATTTTCAATTATTTCTAAACCATAG
Found at i:60688398 original size:10 final size:10
Alignment explanation
Indices: 60688362--60688404 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
60688352 CAAAATTTTG
60688362 TATCATCTTC
1 TATCATCTTC
*
60688372 TATTATCCTTC
1 TATCAT-CTTC
60688383 -ATCATCTTC
1 TATCATCTTC
60688392 TATCATCTTC
1 TATCATCTTC
60688402 TAT
1 TAT
60688405 TTTGAAGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 4 0.14
10 21 0.72
11 4 0.14
ACGTcount: A:0.21, C:0.28, G:0.00, T:0.51
Consensus pattern (10 bp):
TATCATCTTC
Found at i:60690335 original size:40 final size:39
Alignment explanation
Indices: 60690167--60690337 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
60690157 AGAAATCGAA
* *
60690167 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
60690207 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
60690247 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
60690287 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
60690327 TGATATCCGGG
1 TGATATCCGGG
60690338 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:60696362 original size:25 final size:24
Alignment explanation
Indices: 60696320--60696389 Score: 61
Period size: 25 Copynumber: 2.8 Consensus size: 24
60696310 TTTTCTCAAA
*
60696320 AATTTAATTAATATAAAATTTTA-AT
1 AATTTAA-TAATATAAAA-ATTAGAT
*
60696345 AATTTAATAATTTGAAAAATTAGAT
1 AATTTAATAATAT-AAAAATTAGAT
* * *
60696370 AATTGAATAAAATTAAAATT
1 AATTTAATAATATAAAAATT
60696390 TAGGAGAAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
24 14 0.38
25 23 0.62
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.41
Consensus pattern (24 bp):
AATTTAATAATATAAAAATTAGAT
Found at i:60696365 original size:17 final size:17
Alignment explanation
Indices: 60696336--60696390 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
60696326 ATTAATATAA
* *
60696336 AATTTTAATAATTTAAT
1 AATTTGAATAAATTAAT
60696353 AATTTGAA-AAATTAGAT
1 AATTTGAATAAATTA-AT
60696370 AA-TTGAATAAAATTAA-
1 AATTTGAAT-AAATTAAT
60696386 AATTT
1 AATTT
60696391 AGGAGAAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
16 12 0.38
17 14 0.44
18 6 0.19
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (17 bp):
AATTTGAATAAATTAAT
Found at i:60702914 original size:26 final size:26
Alignment explanation
Indices: 60702884--60702938 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
60702874 CTACGTCCTT
60702884 CATGATGGGGTTTAGTCTTCGTTGTC
1 CATGATGGGGTTTAGTCTTCGTTGTC
60702910 CATGATGGGGTTTAGTCTTCGTTGTC
1 CATGATGGGGTTTAGTCTTCGTTGTC
60702936 CAT
1 CAT
60702939 CAATCGTTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.13, C:0.16, G:0.29, T:0.42
Consensus pattern (26 bp):
CATGATGGGGTTTAGTCTTCGTTGTC
Found at i:60707099 original size:30 final size:29
Alignment explanation
Indices: 60707044--60707107 Score: 83
Period size: 30 Copynumber: 2.2 Consensus size: 29
60707034 ATGAATCGGA
***
60707044 AGCTTTGGCACTAAGTGTGTGATTTAAACT
1 AGCTTTGGCACTAAGTGTCCAATTT-AACT
*
60707074 AGCTTTGGCAGTAAGTGTCCAATTTAACT
1 AGCTTTGGCACTAAGTGTCCAATTTAACT
60707103 AGCTT
1 AGCTT
60707108 CGGCTGCTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 9 0.30
30 21 0.70
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.36
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTCCAATTTAACT
Found at i:60715384 original size:39 final size:39
Alignment explanation
Indices: 60715323--60715597 Score: 444
Period size: 39 Copynumber: 7.1 Consensus size: 39
60715313 GAAATGTGTA
*
60715323 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * * *
60715362 TAGAAATATATCCGGGCCAAAGACCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
60715401 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
60715440 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * *
60715479 TGGAAATATATCTGGGC-AAAGACCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
60715517 TGGAAATGTATCCGGGCTAAAGACCCGCAAGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
60715556 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
60715595 TGG
1 TGG
60715598 TAATAAAATT
Statistics
Matches: 217, Mismatches: 18, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
38 34 0.16
39 183 0.84
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (39 bp):
TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
Found at i:60715542 original size:116 final size:117
Alignment explanation
Indices: 60715323--60715602 Score: 499
Period size: 116 Copynumber: 2.4 Consensus size: 117
60715313 GAAATGTGTA
* * *
60715323 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGCTAGAAATATATCCGGGCCAAAGACCC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAAGACCC
*
60715388 GCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
66 GCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAAGCTTTGTGC
*
60715440 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATATATCTGGG-CAAAGACCC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAAGACCC
60715504 GCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAAGCTTTGTGC
66 GCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAAGCTTTGTGC
*
60715556 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTAATA
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATA
60715603 AAATTTTGGG
Statistics
Matches: 157, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
116 106 0.68
117 51 0.32
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (117 bp):
TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAAGACCC
GCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAAGCTTTGTGC
Found at i:60717796 original size:21 final size:21
Alignment explanation
Indices: 60717772--60717813 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
60717762 TGTATATGAA
60717772 TCTCTTTGAGTTGATATAGTT
1 TCTCTTTGAGTTGATATAGTT
60717793 TCTCTTTGAGTTGATATAGTT
1 TCTCTTTGAGTTGATATAGTT
60717814 ATATGGATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.10, G:0.19, T:0.52
Consensus pattern (21 bp):
TCTCTTTGAGTTGATATAGTT
Found at i:60721441 original size:14 final size:14
Alignment explanation
Indices: 60721422--60721451 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
60721412 ATGAGCTACA
60721422 ATTTCAAGGTATAT
1 ATTTCAAGGTATAT
60721436 ATTTCAAGGTATAT
1 ATTTCAAGGTATAT
60721450 AT
1 AT
60721452 GAGCTACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.43
Consensus pattern (14 bp):
ATTTCAAGGTATAT
Found at i:60722183 original size:40 final size:39
Alignment explanation
Indices: 60722033--60722185 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
60722023 AAATGTTCGA
* * ** *
60722033 GTGATATTCGGGCTAAGCTCGAAGGCAATTGTGTAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
60722072 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
60722111 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
60722150 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
60722186 GGTTACCATA
Statistics
Matches: 102, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 85 0.83
40 17 0.17
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:60722201 original size:40 final size:39
Alignment explanation
Indices: 60722034--60722216 Score: 213
Period size: 39 Copynumber: 4.6 Consensus size: 39
60722024 AATGTTCGAG
* * ** * *
60722034 TGATATTCGGGCTAAGCTCGAAGGCAATTGTGTAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
60722073 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
60722112 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
60722151 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
60722191 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
60722217 GTTTGAACGA
Statistics
Matches: 125, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 84 0.67
40 41 0.33
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.25
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:60725019 original size:2 final size:2
Alignment explanation
Indices: 60725012--60725038 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
60725002 GAGACTAGTC
60725012 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
60725039 CATGTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.