Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 198 of 325
Found at i:61079581 original size:80 final size:80
Alignment explanation
Indices: 61079436--61079622 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
61079426 GCTACACATT
* * *
61079436 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
61079500 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
61079516 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
61079579 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
61079597 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
61079623 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:61087614 original size:40 final size:39
Alignment explanation
Indices: 61087570--61087695 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
61087560 GGGACTCAAC
*
61087570 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
61087610 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
61087650 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
61087690 CCGGAT
1 CCGGAT
61087696 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:61087654 original size:80 final size:80
Alignment explanation
Indices: 61087509--61087695 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
61087499 GCTACACATT
* * *
61087509 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
61087573 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
61087589 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
61087652 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
61087670 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
61087696 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:61100790 original size:27 final size:26
Alignment explanation
Indices: 61100751--61100810 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
61100741 CCACATATAT
* *
61100751 ATATCGGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
61100777 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
61100804 ATATCTG
1 ATATCTG
61100811 GCAGCTTCAC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:61108034 original size:81 final size:81
Alignment explanation
Indices: 61107897--61108091 Score: 293
Period size: 81 Copynumber: 2.4 Consensus size: 81
61107887 TTATTCAGAT
* *
61107897 GATATCCGGGCTAAGACTCGAAGGCATTTTGTGCTAGTGACTATAACCGGGTTAAGTCCCAAAGG
1 GATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATAACCGGGCTAAGTCCCAAAGG
*
61107962 CATTTGCGCTAGTGAC
66 CATTTGCGCGAGTGAC
* * *
61107978 GATATTCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATAACCGGGCTAAGTCCCAAAGG
* *
61108043 CATTTGTGCGAGTTAC
66 CATTTGCGCGAGTGAC
* *
61108059 TATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGC
1 GATATCCGGGCTAAGACCCGAAGGCATTTTGTGC
61108092 GATTTGCTAT
Statistics
Matches: 103, Mismatches: 11, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
80 7 0.07
81 96 0.93
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
GATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATAACCGGGCTAAGTCCCAAAGG
CATTTGCGCGAGTGAC
Found at i:61108106 original size:40 final size:40
Alignment explanation
Indices: 61107898--61108091 Score: 271
Period size: 40 Copynumber: 4.8 Consensus size: 40
61107888 TATTCAGATG
* *
61107898 ATATCCGGGCTAAGACTCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* * * * *
61107939 ATAACCGGGTTAAGTCCCAAAGGCATTTGCGCTAGTGACG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
61107979 ATATTCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* *
61108020 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
61108060 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
61108092 GATTTGCTAT
Statistics
Matches: 134, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
40 78 0.58
41 56 0.42
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:61115976 original size:18 final size:19
Alignment explanation
Indices: 61115949--61115990 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
61115939 GCAGTTATAA
*
61115949 CCAAAGT-AAATTAAAATC
1 CCAAAGTAAAAATAAAATC
*
61115967 CCAAATTAAAAATAAAAT-
1 CCAAAGTAAAAATAAAATC
61115985 CCAAAG
1 CCAAAG
61115991 AGGCCTTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.60, C:0.17, G:0.05, T:0.19
Consensus pattern (19 bp):
CCAAAGTAAAAATAAAATC
Found at i:61120635 original size:45 final size:45
Alignment explanation
Indices: 61120511--61120676 Score: 206
Period size: 45 Copynumber: 3.6 Consensus size: 45
61120501 GTGAATTGCT
* * * *
61120511 GATGCCATCTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCC
1 GATGCCATGT-CCA-ACATGGTCTTACACTGGCTCACA-ATCAACGCC
*
61120559 GATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAACGCT
1 GATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAACGCC
* * * * *
61120604 GATTCCTTGACCAACATGGTCTTACATTGGCTCACAATCCACGCC
1 GATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAACGCC
*
61120649 GATGGCATGTCCAACATGGTCTTACACT
1 GATGCCATGTCCAACATGGTCTTACACT
61120677 AGCACACACA
Statistics
Matches: 102, Mismatches: 16, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
45 67 0.66
46 23 0.23
47 3 0.03
48 9 0.09
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.25
Consensus pattern (45 bp):
GATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAACGCC
Found at i:61125954 original size:40 final size:40
Alignment explanation
Indices: 61125869--61126019 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
61125859 AATTGAATGA
* * * *
61125869 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
61125909 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
61125950 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
61125989 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
61126020 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:61126033 original size:40 final size:40
Alignment explanation
Indices: 61125906--61126035 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
61125896 ATGCTGGAAA
* * *
61125906 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
61125946 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
61125986 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
61126026 TTATATCCGG
1 TTATATCCGG
61126036 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:61126034 original size:80 final size:80
Alignment explanation
Indices: 61125868--61126035 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
61125858 AAATTGAATG
* *
61125868 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
61125933 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
61125948 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
61126011 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
61126028 ATATCCGG
1 ATATCCGG
61126036 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:61134019 original size:78 final size:79
Alignment explanation
Indices: 61133855--61134020 Score: 203
Period size: 78 Copynumber: 2.1 Consensus size: 79
61133845 AAATTGAATG
* *
61133855 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCA
61133920 ATTGTGCTAGTGGCT
65 ATTGTGCTAGTGGCT
* * * * *
61133935 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
* *
61133998 TTTGTGC-ACGTGGTT
65 ATTGTGCTA-GTGGCT
61134013 ATATCCGG
1 ATATCCGG
61134021 TTATATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.62
79 3 0.04
80 24 0.32
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:61136384 original size:32 final size:32
Alignment explanation
Indices: 61136338--61136404 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
61136328 ATAACTTAGG
* *
61136338 AAACTTTTTGAACACTTAGAAAATTTTTCTTA
1 AAACTTTTTAAACACTTAGAAAATTTTTCTCA
61136370 AAACTTTTTAAACACTTAGAAAATTTTTCTCA
1 AAACTTTTTAAACACTTAGAAAATTTTTCTCA
61136402 AAA
1 AAA
61136405 TAAGAGACAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.42, C:0.13, G:0.04, T:0.40
Consensus pattern (32 bp):
AAACTTTTTAAACACTTAGAAAATTTTTCTCA
Found at i:61146218 original size:16 final size:16
Alignment explanation
Indices: 61146197--61146228 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
61146187 TTCACAGTTT
61146197 ATGCAATATCAAAGCA
1 ATGCAATATCAAAGCA
61146213 ATGCAATATCAAAGCA
1 ATGCAATATCAAAGCA
61146229 TTTAAATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.19, G:0.12, T:0.19
Consensus pattern (16 bp):
ATGCAATATCAAAGCA
Found at i:61149798 original size:40 final size:40
Alignment explanation
Indices: 61149742--61149959 Score: 244
Period size: 40 Copynumber: 5.5 Consensus size: 40
61149732 CATGAGCATT
* * * *
61149742 TGATTGATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGATT-ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
61149783 TGATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
61149823 TTG-TTATATCCGAGCTAAGACCCGAAGGCATTTGTGCGAG
1 -TGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
61149863 TTG-TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG
1 -TGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* ** * * * **
61149903 TTACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTG
1 TGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
61149943 TGCTTATATCC-GGCTAA
1 TGATTATATCCGGGCTAA
61149960 ATTCCGAAGA
Statistics
Matches: 152, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
39 6 0.04
40 139 0.91
41 7 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
Found at i:61158014 original size:40 final size:40
Alignment explanation
Indices: 61157959--61158174 Score: 244
Period size: 40 Copynumber: 5.5 Consensus size: 40
61157949 CATGAGCATT
* * *
61157959 TGATTGATA-CCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGATT-ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
61157999 TGATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
61158039 TTG-TTATATCC-GGCTAAGACCCGAAGGCATTTGTGCGAG
1 -TGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
61158078 TTG-TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG
1 -TGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* ** * * * **
61158118 TTACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTG
1 TGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
61158158 TGGTTATATCC-GGCTAA
1 TGATTATATCCGGGCTAA
61158175 ATTCCGAAGA
Statistics
Matches: 152, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 47 0.31
40 103 0.68
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
Found at i:61158183 original size:79 final size:80
Alignment explanation
Indices: 61157968--61158174 Score: 274
Period size: 79 Copynumber: 2.6 Consensus size: 80
61157958 TTGATTGATA
* * *
61157968 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
* *** *
61158033 TGCGAGTTGTTATAT
66 TGCAAGTTACCAAAT
* * *
61158048 CC-GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
61158112 TGCAAGTTACCAAAT
66 TGCAAGTTACCAAAT
* * *
61158127 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAA
61158175 ATTCCGAAGA
Statistics
Matches: 110, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
79 74 0.67
80 36 0.33
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTTACCAAAT
Found at i:61165420 original size:39 final size:40
Alignment explanation
Indices: 61165243--61165424 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
61165233 CCGCACCAAG
* * * * * * *
61165243 GCCTACGGGACTTA-CCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
61165282 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
61165322 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
61165362 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
61165401 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
61165425 CATTCAATTT
Statistics
Matches: 122, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 43 0.35
40 77 0.63
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:61168472 original size:40 final size:40
Alignment explanation
Indices: 61168253--61168450 Score: 278
Period size: 40 Copynumber: 5.0 Consensus size: 40
61168243 TCGAATGATG
* *
61168253 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
61168293 TCTGGACTAAGATCCGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
61168333 TCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
61168373 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
61168413 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
61168451 TAACCGGGCT
Statistics
Matches: 145, Mismatches: 9, Indels: 8
0.90 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 134 0.92
41 10 0.07
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61168478 original size:40 final size:40
Alignment explanation
Indices: 61168253--61168478 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
61168243 TCGAATGATG
*
61168253 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
61168293 TCTGGACTAAGAT-CCGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
61168333 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61168373 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
61168413 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
61168454 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61168479 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 158 0.94
41 9 0.05
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61168492 original size:40 final size:40
Alignment explanation
Indices: 61168346--61168497 Score: 116
Period size: 40 Copynumber: 3.8 Consensus size: 40
61168336 AGACTAAGAT
** *
61168346 CCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGACTAAGAT-
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGA-TAAG-TC
** *
61168386 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGATAAGTC
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGATAAGTC
** * *
61168426 CCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
* *
61168466 CCGAAGGTATTTGAACGAG-TAGCTATATCCGG
1 CCGAAGGCATTTGAACGAGCTA-CTATAACCGG
61168498 TTAAACTCCG
Statistics
Matches: 101, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
39 3 0.03
40 93 0.92
41 5 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
Found at i:61174866 original size:40 final size:39
Alignment explanation
Indices: 61174822--61175000 Score: 146
Period size: 40 Copynumber: 4.5 Consensus size: 39
61174812 GCTCGATTAT
* * *
61174822 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGACATAGCCCGGTT-TAGTAACTCGCACAAATGC
* *
61174862 CTTCGGGA-ATTAGCCCGAATTTAGTAACTCGCATAAATGC
1 CTTCGGGACA-TAGCCCG-GTTTAGTAACTCGCACAAATGC
* * * *
61174902 CTTCGGGACTTAACCCGGTTTTGGTAACTCACACAAATGC
1 CTTCGGGACATAGCCCGG-TTTAGTAACTCGCACAAATGC
* * * * *
61174942 CTTCGGGA-ATTGACCCAGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAG-CCC-GGTTTAGTAAC-TCGCACAAATGC
*
61174983 CTTCGGGACTTAGCCCGG
1 CTTCGGGACATAGCCCGG
61175001 ATACCATTCG
Statistics
Matches: 108, Mismatches: 23, Indels: 16
0.73 0.16 0.11
Matches are distributed among these distances:
39 2 0.02
40 81 0.75
41 23 0.21
42 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CTTCGGGACATAGCCCGGTTTAGTAACTCGCACAAATGC
Found at i:61174920 original size:80 final size:81
Alignment explanation
Indices: 61174822--61175000 Score: 211
Period size: 80 Copynumber: 2.2 Consensus size: 81
61174812 GCTCGATTAT
* * * * *
61174822 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCC-GAATTTA
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGAATTGA-CCCAG-ATTTA
* * *
61174885 GTAAC-TCGCATAAATGC
64 GTAACTTAGCACAAAAGC
* * *
61174902 CTTCGGGACTTAACCCGGTTTTGGTAACTCACACAAATGCCTTCGGGAATTGACCCAGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGAATTGACCCAGATTTAGT
*
61174967 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
61174983 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
61175001 ATACCATTCG
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
80 55 0.66
81 28 0.34
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGAATTGACCCAGATTTAGT
AACTTAGCACAAAAGC
Found at i:61179556 original size:40 final size:40
Alignment explanation
Indices: 61179502--61179653 Score: 220
Period size: 40 Copynumber: 3.8 Consensus size: 40
61179492 GTGCTAAGTT
61179502 ACTAA-ATCCGAAGGCAATTGTACGAGTTACTAAATCCGG
1 ACTAAGATCCGAAGGCAATTGTACGAGTTACTAAATCCGG
61179541 ACTAAGATCCGAAGGCAATTGTACGAGTTACTAAATCCGG
1 ACTAAGATCCGAAGGCAATTGTACGAGTTACTAAATCCGG
* *
61179581 ACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGG
1 ACTAAGATCCGAAGGCAATTGTACGAGTTACTAAATCC-GG
* * *
61179622 A-TAAG-TCCTGAAGGCATTTGTGCGAGCTACTA
1 ACTAAGATCC-GAAGGCAATTGTACGAGTTACTA
61179654 TACCCGAGCT
Statistics
Matches: 107, Mismatches: 3, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
39 8 0.07
40 96 0.90
41 3 0.03
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (40 bp):
ACTAAGATCCGAAGGCAATTGTACGAGTTACTAAATCCGG
Found at i:61179675 original size:40 final size:40
Alignment explanation
Indices: 61179509--61179681 Score: 138
Period size: 40 Copynumber: 4.3 Consensus size: 40
61179499 GTTACTAAAT
* * * *
61179509 CCGAAGGCAATTGTACGAGTTACTAAATCCG-GACTAAGAT-
1 CCGAAGGCATTTGTGCGAGCTACTAAACCCGAGA-TAAG-TC
* * * *
61179549 CCGAAGGCAATTGTACGAGTTACTAAATCCG-GACTAAGAT-
1 CCGAAGGCATTTGTGCGAGCTACTAAACCCGAGA-TAAG-TC
* * *
61179589 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGATAAGTC
1 CCGAAGGCATTTGTGCGAGCTACTAAACCCGAGATAAGTC
* * * *
61179629 CTGAAGGCATTTGTGCGAGCTACTATACCCGAGCTATGTC
1 CCGAAGGCATTTGTGCGAGCTACTAAACCCGAGATAAGTC
*
61179669 CCGAAGGTATTTG
1 CCGAAGGCATTTG
61179682 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 117 0.98
41 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGCTACTAAACCCGAGATAAGTC
Found at i:61181779 original size:12 final size:12
Alignment explanation
Indices: 61181762--61181787 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
61181752 TGGTTTATTA
61181762 TTGATATATAAT
1 TTGATATATAAT
61181774 TTGATATATAAT
1 TTGATATATAAT
61181786 TT
1 TT
61181788 TTTGTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (12 bp):
TTGATATATAAT
Found at i:61190954 original size:46 final size:46
Alignment explanation
Indices: 61190898--61191070 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
61190888 TGGTTGAGCA
*
61190898 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
61190944 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
61190991 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
61191037 CCCGAGCTCATTGATTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
61191071 GGGGTGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 28 0.26
48 3 0.03
50 6 0.06
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:61191056 original size:93 final size:93
Alignment explanation
Indices: 61190895--61191065 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
61190885 TGATGGTTGA
*** * *
61190895 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCATTGAGT
61190960 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
61190988 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAGCTCATTGATT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCATTGAGT
61191053 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
61191066 ACTTAGGGGT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61202789 original size:19 final size:18
Alignment explanation
Indices: 61202750--61202788 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
61202740 GTTGCTTGGC
61202750 TTTGGATAAAAACATCAT
1 TTTGGATAAAAACATCAT
* *
61202768 TTTGGATCAAAACGTCAT
1 TTTGGATAAAAACATCAT
61202786 TTT
1 TTT
61202789 TTGCCATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (18 bp):
TTTGGATAAAAACATCAT
Found at i:61227491 original size:48 final size:48
Alignment explanation
Indices: 61227418--61227596 Score: 182
Period size: 48 Copynumber: 3.7 Consensus size: 48
61227408 GTAAATTGCC
* * * * *
61227418 GATGCCATGTCCGAGACATGGTCTTACGCTGGCTCACATGTCGAGGCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGGCA
* * *
61227466 TG-TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTTAATGCA
1 -GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGGCA
* * * * **
61227514 GATGCCATGTCCCAGGCATGGTCTTACACCAGCACACATATCAACACCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAA-GGCA
* *
61227563 -ATGCCATGTCCCAGACATGGTCCTACACTGGCTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC
61227597 TCATAATGTG
Statistics
Matches: 107, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
47 1 0.01
48 103 0.96
49 3 0.03
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGGCA
Found at i:61227618 original size:96 final size:96
Alignment explanation
Indices: 61227468--61227652 Score: 246
Period size: 96 Copynumber: 1.9 Consensus size: 96
61227458 TCGAGGCATG
* ** * **
61227468 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTTAATGCAGATGCCATGTCCCAGGCAT
1 TGCCATGTCCCAGACATGGTCCTACACTAGCTCTCATAATAATGCAGATACCATGTCCCAAACAT
*
61227533 GGTCTTACACCAGCACACATATCAACACCAA
66 AGTCTTACACCAGCACACATATCAACACCAA
* * **
61227564 TGCCATGTCCCAGACATGGTCCTACACTGGCTCTCATAAT-GTGTTTGATACCATGTCCCAAACA
1 TGCCATGTCCCAGACATGGTCCTACACTAGCTCTCATAATAATG-CAGATACCATGTCCCAAACA
*
61227628 TAGTCTTACACTAGCACACATATCA
65 TAGTCTTACACCAGCACACATATCA
61227653 CCCAAATGTC
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
95 2 0.03
96 74 0.97
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (96 bp):
TGCCATGTCCCAGACATGGTCCTACACTAGCTCTCATAATAATGCAGATACCATGTCCCAAACAT
AGTCTTACACCAGCACACATATCAACACCAA
Found at i:61231821 original size:40 final size:39
Alignment explanation
Indices: 61231777--61231958 Score: 220
Period size: 39 Copynumber: 4.6 Consensus size: 39
61231767 GTTCAAAACA
* * ** * *
61231777 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACACGCACAATTG
* *
61231817 CCTTCGGGACTTAACCCGGATATCACAACACGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACACGCACAATTG
* *
61231857 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACACGCACAATTG
* **
61231896 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACACGCACAATTG
*
61231935 CCTTCGGGCTTAGCCTGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
61231959 CTCTAACATT
Statistics
Matches: 126, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 86 0.68
40 40 0.32
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACACGCACAATTG
Found at i:61231890 original size:39 final size:39
Alignment explanation
Indices: 61231807--61231959 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
61231797 TATGGTAACC
* * *
61231807 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACA
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
61231847 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
61231886 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
61231925 CGCACAATTGCCTTCGGGCTTAGCCTGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
61231960 TCTAACATTC
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 87 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:61234086 original size:39 final size:39
Alignment explanation
Indices: 61234034--61234235 Score: 314
Period size: 39 Copynumber: 5.2 Consensus size: 39
61234024 TGTGAATGAA
* *
61234034 TGTGCGAATTGTGATATCCGGGCTAAGCTCGAAGGCAAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
61234073 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
61234112 TATGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
61234151 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
61234190 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
61234230 TGTGCG
1 TGTGCG
61234236 GGTTACCATA
Statistics
Matches: 151, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 134 0.89
40 17 0.11
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:61242221 original size:39 final size:39
Alignment explanation
Indices: 61242127--61242322 Score: 287
Period size: 39 Copynumber: 5.2 Consensus size: 39
61242117 ATGTGATGAA
61242127 TGTGCGAATTGTGATATCCGGGCTAAG-CCGAA-GCAA-
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
61242163 TGTGCG-ATTGTG--ATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
61242199 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
61242238 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
61242277 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
61242317 TGTGCG
1 TGTGCG
61242323 GGTTACCATA
Statistics
Matches: 146, Mismatches: 7, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
33 12 0.08
34 5 0.03
35 10 0.07
36 12 0.08
37 6 0.04
39 84 0.58
40 17 0.12
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:61242338 original size:40 final size:39
Alignment explanation
Indices: 61242127--61242352 Score: 266
Period size: 39 Copynumber: 5.9 Consensus size: 39
61242117 ATGTGATGAA
* *
61242127 TGTGCGAATTGTGATATCCGGGCTAAG-CCGAA-GCAA-
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
61242163 TGTGCGA-TTGTG--ATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
61242199 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
61242238 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
61242277 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
61242317 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
61242353 TGTTTTGAAC
Statistics
Matches: 169, Mismatches: 14, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
33 12 0.07
34 5 0.03
35 9 0.05
36 14 0.08
37 5 0.03
39 84 0.50
40 40 0.24
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:61250518 original size:40 final size:39
Alignment explanation
Indices: 61250474--61250655 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
61250464 GTTCAAAACA
* * ** * *
61250474 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
61250514 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
61250554 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
61250593 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
61250632 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
61250656 CTCGAACATT
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:61250585 original size:39 final size:39
Alignment explanation
Indices: 61250504--61250656 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
61250494 TATGGTAACC
* *
61250504 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
61250544 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
61250583 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
61250622 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
61250657 TCGAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:61258589 original size:40 final size:39
Alignment explanation
Indices: 61258545--61258726 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
61258535 GTTCAAAACA
* * ** * *
61258545 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
61258585 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
61258625 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
61258664 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
61258703 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
61258727 CTCGAACATT
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:61258656 original size:39 final size:39
Alignment explanation
Indices: 61258575--61258727 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
61258565 TATGGTAACC
* *
61258575 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
61258615 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
61258654 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
61258693 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
61258728 TCGAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:61263053 original size:43 final size:43
Alignment explanation
Indices: 61263006--61263118 Score: 122
Period size: 42 Copynumber: 2.7 Consensus size: 43
61262996 TCTCGATTGA
* **
61263006 GATTTACGTATAAGACCATGTCTGGGACATTGGCATCG-TATTT
1 GATTTACGTGTAAGACCATGTCTGGGACAGAGGCATCGATA-TT
* *
61263049 GATTT-CGTGTAAGACCCTGTCTGGGATAGAGGCATCGATATT
1 GATTTACGTGTAAGACCATGTCTGGGACAGAGGCATCGATATT
* * * *
61263091 GAATTACATGTAAGACCACGTCCGGGAC
1 GATTTACGTGTAAGACCATGTCTGGGAC
61263119 GTCGGCATTG
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 33 0.58
43 24 0.42
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (43 bp):
GATTTACGTGTAAGACCATGTCTGGGACAGAGGCATCGATATT
Found at i:61275184 original size:27 final size:29
Alignment explanation
Indices: 61275125--61275194 Score: 110
Period size: 27 Copynumber: 2.5 Consensus size: 29
61275115 AAATTTGTAC
61275125 AGCACTAAGTGTGCGAGTTTGATCATACT
1 AGCACTAAGTGTGCGAGTTTGATCATACT
*
61275154 -GCACTAAGTGTGCGAG-TTGATTATA-T
1 AGCACTAAGTGTGCGAGTTTGATCATACT
61275180 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
61275195 GACTCACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
26 1 0.03
27 22 0.56
28 16 0.41
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGTTTGATCATACT
Found at i:61282985 original size:27 final size:28
Alignment explanation
Indices: 61282929--61282998 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
61282919 AAATTTGTAC
61282929 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
61282957 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
61282984 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
61282999 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:61283009 original size:27 final size:27
Alignment explanation
Indices: 61282929--61283010 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
61282919 AAATTTGTAC
* *
61282929 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
61282957 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
61282984 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
61283011 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:61298245 original size:11 final size:11
Alignment explanation
Indices: 61298229--61298253 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
61298219 TTATATATAC
61298229 TAATAAAATAA
1 TAATAAAATAA
61298240 TAATAAAATAA
1 TAATAAAATAA
61298251 TAA
1 TAA
61298254 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:61299674 original size:47 final size:47
Alignment explanation
Indices: 61299615--61299737 Score: 174
Period size: 47 Copynumber: 2.6 Consensus size: 47
61299605 GCCCATAAGT
* * *
61299615 GAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGCTACATCTAAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATACCTAACTACATCTAAC
* * * * *
61299662 GAACTCGAACTCAACTTAACGAGTTCGGATACCTAATTATATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATACCTAACTACATCTAAC
61299709 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
61299738 ACTCAAATAT
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.24
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATACCTAACTACATCTAAC
Found at i:61302529 original size:11 final size:11
Alignment explanation
Indices: 61302513--61302537 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
61302503 TTATATATAC
61302513 TAATAAAATAA
1 TAATAAAATAA
61302524 TAATAAAATAA
1 TAATAAAATAA
61302535 TAA
1 TAA
61302538 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:61304426 original size:40 final size:40
Alignment explanation
Indices: 61304352--61304509 Score: 198
Period size: 40 Copynumber: 4.0 Consensus size: 40
61304342 TCAAATGATG
* *
61304352 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
** *
61304392 TCTAGACTAAGATCCGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
61304432 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
61304472 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
61304510 TAACCGGGCT
Statistics
Matches: 105, Mismatches: 9, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
39 1 0.01
40 94 0.90
41 10 0.10
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61304517 original size:40 final size:40
Alignment explanation
Indices: 61304352--61304537 Score: 195
Period size: 40 Copynumber: 4.7 Consensus size: 40
61304342 TCAAATGATG
* *
61304352 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGGATAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
61304392 T-CTAGACTAAGAT-CCGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
61304432 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61304472 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
61304513 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGATAAGTCCCGAAGGCATTTG
61304538 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
39 3 0.02
40 112 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61304551 original size:40 final size:40
Alignment explanation
Indices: 61304445--61304556 Score: 111
Period size: 40 Copynumber: 2.8 Consensus size: 40
61304435 GGACTAAGAT
** *
61304445 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGATAAGTC
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGATAAGTC
** * *
61304485 CCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
* *
61304525 CCGAAGGTATTTGAACGAG-TAGCTATATCCGG
1 CCGAAGGCATTTGAACGAGCTA-CTATAACCGG
61304557 TTAAACTCTG
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
39 2 0.03
40 59 0.94
41 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
Found at i:61312167 original size:27 final size:28
Alignment explanation
Indices: 61312137--61312206 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
61312127 ATAATAAGTC
*
61312137 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
61312164 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
61312192 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61312207 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:61320106 original size:29 final size:28
Alignment explanation
Indices: 61320071--61320202 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 28
61320061 CTACTCGATT
*
61320071 TCGCACACTTAGTGCCACGTAATTT-AAGC
1 TCGCACACTTAGTGCCA--TAATTTCCAGC
** *
61320100 TCGCACACACAGTGCCATATTTTCCAGC
1 TCGCACACTTAGTGCCATAATTTCCAGC
* *
61320128 TTGCACACTTAGTGCCAAATATTTCCAGC
1 TCGCACACTTAGTGCCATA-ATTTCCAGC
*
61320157 ACGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATA-ATTTCCAGC
*
61320186 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
61320203 ATCTCGACAC
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
27 5 0.06
28 18 0.20
29 66 0.74
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATAATTTCCAGC
Found at i:61320134 original size:57 final size:58
Alignment explanation
Indices: 61320072--61320203 Score: 169
Period size: 57 Copynumber: 2.3 Consensus size: 58
61320062 TACTCGATTT
** * *
61320072 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAGTGCCATAT-TTTCCAGCT
1 CGCACACTTAGTGCCAAAT-ATTTCAAGCACGCACACACAGTGCCATATATTTCCAGCA
* * **
61320129 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCAAATATTTCAAGCACGCACACACAGTGCCATATATTTCCAGCA
61320187 CGCACACTTAGTGCCAA
1 CGCACACTTAGTGCCAA
61320204 TCTCGACACC
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
56 4 0.06
57 36 0.56
58 24 0.38
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCAAATATTTCAAGCACGCACACACAGTGCCATATATTTCCAGCA
Found at i:61322563 original size:39 final size:39
Alignment explanation
Indices: 61322520--61322626 Score: 130
Period size: 39 Copynumber: 2.7 Consensus size: 39
61322510 GGAAATTATA
*
61322520 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-T-GGCTAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGC-AGTTAGGCT-AT
**
61322559 CCGGGCTAAGACCCGAAGGC-ATTCGTGCAGTTATTCTAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCAGTTAGGCTAT
*
61322598 CCGGGCTAAGACCCGAAGGCATTTGTGCA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCA
61322627 AATCGTGATT
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
38 5 0.08
39 51 0.85
40 4 0.07
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.22
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAGTTAGGCTAT
Found at i:61328436 original size:40 final size:38
Alignment explanation
Indices: 61328339--61328445 Score: 119
Period size: 39 Copynumber: 2.7 Consensus size: 38
61328329 GAAATTATAA
* *
61328339 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCGAGT-GCTACAT
*
61328379 CC-GGCTAAGACCCGAAGGCATTCGTGCGAGT-CATTCTAT
1 CCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGC-TAC-AT
61328418 CCGGGCTAAGACCCGAAGGCATTTGTGC
1 CCGGGCTAAGACCCGAAGGCA-TTGTGC
61328446 AAATCGTGAT
Statistics
Matches: 59, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
37 1 0.02
38 5 0.08
39 27 0.46
40 24 0.41
41 2 0.03
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.21
Consensus pattern (38 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCGAGTGCTACAT
Found at i:61328459 original size:40 final size:39
Alignment explanation
Indices: 61328295--61328477 Score: 129
Period size: 40 Copynumber: 4.6 Consensus size: 39
61328285 AAATTGAATG
* * *
61328295 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
61328335 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
61328375 ACATCC-GGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
61328414 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
61328453 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
61328478 CTTGGTGCGG
Statistics
Matches: 111, Mismatches: 26, Indels: 12
0.74 0.17 0.08
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 33 0.30
40 72 0.65
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:61336571 original size:40 final size:39
Alignment explanation
Indices: 61336406--61336589 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
61336396 AAATTGAATG
* * *
61336406 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
61336446 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
61336486 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
61336526 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
61336565 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
61336590 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:61336614 original size:80 final size:81
Alignment explanation
Indices: 61336446--61336634 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
61336436 GCTGGAAATT
* * * *
61336446 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
61336511 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
61336527 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
61336590 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
61336606 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
61336635 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:61338800 original size:43 final size:43
Alignment explanation
Indices: 61338752--61338889 Score: 131
Period size: 43 Copynumber: 3.2 Consensus size: 43
61338742 GTCCCAAATG
* * *
61338752 TGGTCTTACATGTAAATCAATATCGATGCCTCTGTCCTAGACA
1 TGGTCTTACAAGTAAATCAATATCGATGCCTATGTCCCAGACA
* *
61338795 AGGTCTTACAAG-AAATTAGATA-CGATG-CTGATGTCCCAGACA
1 TGGTCTTACAAGTAAATCA-ATATCGATGCCT-ATGTCCCAGACA
* * * * *
61338837 TGGTCTTATACGTAAATCTCA-ATCGAGGCCTGTGTCCCAGACA
1 TGGTCTTACAAGTAAATC-AATATCGATGCCTATGTCCCAGACA
61338880 TGGTCTTACA
1 TGGTCTTACA
61338890 CGATGTCATA
Statistics
Matches: 76, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
41 2 0.03
42 30 0.39
43 42 0.55
44 2 0.03
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (43 bp):
TGGTCTTACAAGTAAATCAATATCGATGCCTATGTCCCAGACA
Found at i:61342315 original size:27 final size:27
Alignment explanation
Indices: 61342274--61342466 Score: 151
Period size: 27 Copynumber: 7.1 Consensus size: 27
61342264 GGTCGTTAGG
61342274 CCCTCAGTTTG-AAAATTACCGAAATAC
1 CCCT-AGTTTGTAAAATTACCGAAATAC
*
61342301 CCCTAGTTTGTAAAATTATCGAAATAC
1 CCCTAGTTTGTAAAATTACCGAAATAC
* *
61342328 CCC-CGATTTGTAAAATTACTGAAATAC
1 CCCTAG-TTTGTAAAATTACCGAAATAC
* * * * *
61342355 CCTTGGTTTGAAAAATTATCAAAATAC
1 CCCTAGTTTGTAAAATTACCGAAATAC
* * * *
61342382 CCCCAATTTATAAAATTATCGAAATAC
1 CCCTAGTTTGTAAAATTACCGAAATAC
* * *
61342409 CCAT-GTAGTGTAAAAGTACCGAAATA-
1 CCCTAGT-TTGTAAAATTACCGAAATAC
* ** *
61342435 CCCTTGTAGCGTAAAATTACAGAAATAC
1 CCCTAGT-TTGTAAAATTACCGAAATAC
61342463 CCCT
1 CCCT
61342467 GTAGGGAAAA
Statistics
Matches: 132, Mismatches: 28, Indels: 11
0.77 0.16 0.06
Matches are distributed among these distances:
26 11 0.08
27 116 0.88
28 5 0.04
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
CCCTAGTTTGTAAAATTACCGAAATAC
Found at i:61342370 original size:54 final size:54
Alignment explanation
Indices: 61342281--61342410 Score: 174
Period size: 54 Copynumber: 2.4 Consensus size: 54
61342271 AGGCCCTCAG
* * * *
61342281 TTTG-AAAATTACCGAAATACCCCTAGTTTGTAAAATTATCGAAATACCCCCGA
1 TTTGTAAAATTACTGAAATACCCCTAGTTTGAAAAATTATCAAAATACCCCCAA
* *
61342334 TTTGTAAAATTACTGAAATACCCTTGGTTTGAAAAATTATCAAAATACCCCCAA
1 TTTGTAAAATTACTGAAATACCCCTAGTTTGAAAAATTATCAAAATACCCCCAA
*
61342388 TTTATAAAATTA-TCGAAATACCC
1 TTTGTAAAATTACT-GAAATACCC
61342411 ATGTAGTGTA
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
53 5 0.07
54 63 0.93
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
TTTGTAAAATTACTGAAATACCCCTAGTTTGAAAAATTATCAAAATACCCCCAA
Found at i:61342421 original size:81 final size:80
Alignment explanation
Indices: 61342280--61342440 Score: 207
Period size: 81 Copynumber: 2.0 Consensus size: 80
61342270 TAGGCCCTCA
* * * * * * *
61342280 GTTTGAAAATTACCGAAATACCCCTAGTTTGTAAAATTATCGAAATACCCCCGATTTGTAAAATT
1 GTTTGAAAATTACCAAAATACCCCCAATTTATAAAATTATCGAAATACCCACGATGTGTAAAAGT
*
61342345 ACTGAAATACCCTTG
66 ACCGAAATACCCTTG
* *
61342360 GTTTGAAAAATTATCAAAATACCCCCAATTTATAAAATTATCGAAATACCCATG-TAGTGTAAAA
1 GTTTG-AAAATTACCAAAATACCCCCAATTTATAAAATTATCGAAATACCCACGAT-GTGTAAAA
61342424 GTACCGAAATACCCTTG
64 GTACCGAAATACCCTTG
61342441 TAGCGTAAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
80 6 0.09
81 63 0.91
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (80 bp):
GTTTGAAAATTACCAAAATACCCCCAATTTATAAAATTATCGAAATACCCACGATGTGTAAAAGT
ACCGAAATACCCTTG
Found at i:61342434 original size:54 final size:53
Alignment explanation
Indices: 61342285--61342437 Score: 173
Period size: 54 Copynumber: 2.8 Consensus size: 53
61342275 CCTCAGTTTG
* * *
61342285 AAAATTACCGAAATACCCCTAGTTTGTAAAATTATCGAAATACCCCCGATTTGT
1 AAAATTA-CGAAATACCCATAGTTTGTAAAATTATCGAAATACCCCCAATTTAT
* * * *
61342339 AAAATTACTGAAATACCCTTGGTTTGAAAAATTATCAAAATACCCCCAATTTAT
1 AAAATTAC-GAAATACCCATAGTTTGTAAAATTATCGAAATACCCCCAATTTAT
* * *
61342393 AAAATTATCGAAATACCCAT-GTAGTGTAAAAGTACCGAAATACCC
1 AAAATTA-CGAAATACCCATAGT-TTGTAAAATTATCGAAATACCC
61342438 TTGTAGCGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
53 3 0.04
54 80 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.28
Consensus pattern (53 bp):
AAAATTACGAAATACCCATAGTTTGTAAAATTATCGAAATACCCCCAATTTAT
Found at i:61342451 original size:81 final size:80
Alignment explanation
Indices: 61342285--61342465 Score: 195
Period size: 81 Copynumber: 2.2 Consensus size: 80
61342275 CCTCAGTTTG
* * * * * * * *
61342285 AAAATTACCGAAATACCCCTAGTTTGTAAAATTATCGAAATACCCCCGATTTGTAAAATTACTGA
1 AAAATTA-CAAAATACCCCCAATTTATAAAATTATCGAAATACCCACGATGTGTAAAAGTACCGA
**
61342350 AATACCCTTGGTTTGA
65 AATACCCTTGGTGCGA
*
61342366 AAAATTATCAAAATACCCCCAATTTATAAAATTATCGAAATACCCATG-TAGTGTAAAAGTACCG
1 AAAATTA-CAAAATACCCCCAATTTATAAAATTATCGAAATACCCACGAT-GTGTAAAAGTACCG
*
61342430 AAATACCCTT-GTAGCGT
64 AAATACCCTTGGT-GCGA
61342447 AAAATTACAGAAATACCCC
1 AAAATTACA-AAATACCCC
61342466 TGTAGGGAAA
Statistics
Matches: 84, Mismatches: 13, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
80 5 0.06
81 79 0.94
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (80 bp):
AAAATTACAAAATACCCCCAATTTATAAAATTATCGAAATACCCACGATGTGTAAAAGTACCGAA
ATACCCTTGGTGCGA
Found at i:61343030 original size:32 final size:32
Alignment explanation
Indices: 61342989--61343050 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
61342979 TATATTACCG
*
61342989 TTACTGATGGCTATGTACCAAACATAATACAA
1 TTACCGATGGCTATGTACCAAACATAATACAA
* * **
61343021 TTACCGATGGCTTTGTTCCAATTATAATAC
1 TTACCGATGGCTATGTACCAAACATAATAC
61343051 CGCTACTGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (32 bp):
TTACCGATGGCTATGTACCAAACATAATACAA
Found at i:61348856 original size:43 final size:43
Alignment explanation
Indices: 61348790--61348948 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 43
61348780 AGCTCGTATA
** *
61348790 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATATCCCAGACAG-GGTCTTACACGTAATCAAATATCG
* * ** **
61348833 ATGCCATTATCCTAGACAGGGTCTTACACAAAATCATTTAT-G
1 ATGCCAATATCCCAGACAGGGTCTTACACGTAATCAAATATCG
* * * *
61348875 ATGACAATGTCCCAGACATGGTCTTACACGTAAATCAAAAATCG
1 ATGCCAATATCCCAGACAGGGTCTTACACGT-AATCAAATATCG
** * *
61348919 ATGCCAACGTCCAAGACATGGTCTTACACG
1 ATGCCAATATCCCAGACAGGGTCTTACACG
61348949 ATAACACATA
Statistics
Matches: 91, Mismatches: 22, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
42 25 0.27
43 37 0.41
44 29 0.32
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAATATCCCAGACAGGGTCTTACACGTAATCAAATATCG
Found at i:61352383 original size:43 final size:42
Alignment explanation
Indices: 61352251--61352409 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 42
61352241 TTCTGATATG
* ** *
61352251 TGATTTTGTGTAAGACCACATCTAGGAC-GTTGTGCATCA-ATCT
1 TGATTTCGTGTAAGACCATGTCTGGGACAG-TG-GCATCACAT-T
*
61352294 TAGATTTACGTGTAAGACCATGTCTGGGACATTGGCATCACATT
1 T-GATTT-CGTGTAAGACCATGTCTGGGACAGTGGCATCACATT
* * *
61352338 TGATTTCGTGTAAGACCCTGTTTAGGG-CAGTGGCATCGATATT
1 TGATTTCGTGTAAGACCATGTCT-GGGACAGTGGCATC-ACATT
* * * *
61352381 TGATTACATGTAAGACCACGTCTAGGACA
1 TGATTTCGTGTAAGACCATGTCTGGGACA
61352410 TTGGTATTGT
Statistics
Matches: 94, Mismatches: 15, Indels: 14
0.76 0.12 0.11
Matches are distributed among these distances:
42 26 0.28
43 33 0.35
44 13 0.14
45 22 0.23
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.32
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTGGGACAGTGGCATCACATT
Found at i:61354044 original size:30 final size:31
Alignment explanation
Indices: 61354000--61354059 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
61353990 AGCTTCAACC
*
61354000 AGCTCACTTGAGC-TTGTTTCAACTCGTTTG
1 AGCTCAATTGAGCTTTGTTTCAACTCGTTTG
* * *
61354030 AGCTCAATTTAGCTTTTTTTCAGCTCGTTT
1 AGCTCAATTGAGCTTTGTTTCAACTCGTTT
61354060 CTTTTACTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.45
Consensus pattern (31 bp):
AGCTCAATTGAGCTTTGTTTCAACTCGTTTG
Found at i:61363847 original size:30 final size:31
Alignment explanation
Indices: 61363813--61363871 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
61363803 AGCTCCAACC
* *
61363813 AGCTCACTTGAGCTTGTTTT-AGCTCGTTTG
1 AGCTCAATTGAGCTTCTTTTCAGCTCGTTTG
*
61363843 AGCTCAATTTAGCTTCTTTTCAGCTCGTT
1 AGCTCAATTGAGCTTCTTTTCAGCTCGTT
61363872 CCTTTTACTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 17 0.68
31 8 0.32
ACGTcount: A:0.15, C:0.22, G:0.19, T:0.44
Consensus pattern (31 bp):
AGCTCAATTGAGCTTCTTTTCAGCTCGTTTG
Found at i:61367312 original size:43 final size:43
Alignment explanation
Indices: 61367246--61367403 Score: 137
Period size: 43 Copynumber: 3.7 Consensus size: 43
61367236 AACAAGTACA
* * ** *
61367246 ATGCCAATGTCCCGGACGTGGTCTTACATGTAACTCAATATCG
1 ATGCCTATGTCCCAGACAAGGTCTTACACGTAACTCAATATCG
* *
61367289 ATGCCTCTGTCCCAGACAAGGTCTTACACG-AAATCAGATA-CG
1 ATGCCTATGTCCCAGACAAGGTCTTACACGTAACTCA-ATATCG
* *
61367331 ATG-CTGATGTCCCAGACATGGTCTTATACGTAAATCTC-A-ATCG
1 ATGCCT-ATGTCCCAGACAAGGTCTTACACGT-AA-CTCAATATCG
* * *
61367374 AGGCCTGTGTCCCAGACACGGTCTTACACG
1 ATGCCTATGTCCCAGACAAGGTCTTACACG
61367404 ATGTCTCAGA
Statistics
Matches: 93, Mismatches: 15, Indels: 14
0.76 0.12 0.11
Matches are distributed among these distances:
41 2 0.02
42 32 0.34
43 53 0.57
44 4 0.04
45 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (43 bp):
ATGCCTATGTCCCAGACAAGGTCTTACACGTAACTCAATATCG
Found at i:61371804 original size:17 final size:17
Alignment explanation
Indices: 61371777--61371817 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
61371767 ACAATTGTAT
*
61371777 TGAAA-TTGATGTTAATA
1 TGAAATTTGATG-GAATA
61371794 -GAAATTTGATGGAATA
1 TGAAATTTGATGGAATA
61371810 TGAAATTT
1 TGAAATTT
61371818 AAAAGAAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (17 bp):
TGAAATTTGATGGAATA
Found at i:61372173 original size:38 final size:38
Alignment explanation
Indices: 61372085--61372185 Score: 112
Period size: 38 Copynumber: 2.7 Consensus size: 38
61372075 AAAAAAGGTG
* * * ** *
61372085 GTGCTAAGTGGATATACCATGGTTATACGTGTAATGTG
1 GTGCTAAGTGGATATACCACGGTTAAACATGTAACATA
* * *
61372123 GTGCGAAATGGATATACCACGGTTAAACATTTAACATA
1 GTGCTAAGTGGATATACCACGGTTAAACATGTAACATA
*
61372161 GTGCTAAGTGGATATGCCACGGTTA
1 GTGCTAAGTGGATATACCACGGTTA
61372186 CATATATTGA
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
38 51 1.00
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.30
Consensus pattern (38 bp):
GTGCTAAGTGGATATACCACGGTTAAACATGTAACATA
Found at i:61378291 original size:34 final size:36
Alignment explanation
Indices: 61378245--61378320 Score: 93
Period size: 38 Copynumber: 2.1 Consensus size: 36
61378235 TGCCACAGTT
* *
61378245 ATATAAATTGGTT-CA-TTACCATGGTGCTAAGTGG
1 ATATAAAATGGTTACATTTAACATGGTGCTAAGTGG
*
61378279 ATATAAAATGGTTAAACATTTAACGTGGTGCTAAGTGG
1 ATATAAAATGGTT--ACATTTAACATGGTGCTAAGTGG
61378317 ATAT
1 ATAT
61378321 GCCATGGTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
34 12 0.34
37 2 0.06
38 21 0.60
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.34
Consensus pattern (36 bp):
ATATAAAATGGTTACATTTAACATGGTGCTAAGTGG
Found at i:61378313 original size:133 final size:132
Alignment explanation
Indices: 61378131--61378377 Score: 296
Period size: 133 Copynumber: 1.9 Consensus size: 132
61378121 AATGAAAAAA
** * *
61378131 CATGGTGCTAAGTGGATATACCACGGTTATACGTGGAACGTGAAACTAAGTGGATATACCACAAT
1 CATGGTGCTAAGTGGATATAAAACGGTTAAACATGGAACGTGAAACTAAGTGGATATACCACAAT
* *
61378196 TACACATAATGATACATGTAACGTGGTGCTAAGTGGATATGCCACAGTTATATAAATTGGTTCAT
66 TACACATAATGATACAT-TAACGTGGTGCTAAGTAGATATACCACAGTTATATAAATTGGTTCAT
61378261 TAC
130 TAC
* ** *** * ***
61378264 CATGGTGCTAAGTGGATATAAAATGGTTAAACATTTAACGTGGTGCTAAGTGGATATGCCATGGT
1 CATGGTGCTAAGTGGATATAAAACGGTTAAACATGGAACGTGAAACTAAGTGGATATACCACAAT
** * * *
61378329 TACATGTATTGATTCATTAACGTGGTGCTAAGTAGATATACCACGGTTA
66 TACACATAATGATACATTAACGTGGTGCTAAGTAGATATACCACAGTTA
61378378 AACATGTAAC
Statistics
Matches: 93, Mismatches: 21, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
132 29 0.31
133 64 0.69
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.30
Consensus pattern (132 bp):
CATGGTGCTAAGTGGATATAAAACGGTTAAACATGGAACGTGAAACTAAGTGGATATACCACAAT
TACACATAATGATACATTAACGTGGTGCTAAGTAGATATACCACAGTTATATAAATTGGTTCATT
AC
Found at i:61378328 original size:38 final size:39
Alignment explanation
Indices: 61378266--61378425 Score: 117
Period size: 38 Copynumber: 3.9 Consensus size: 39
61378256 TTCATTACCA
** *
61378266 TGGTGCTAAGTGGATATAAAATGGTTAAACAT-TTAACG
1 TGGTGCTAAGTGGATATACCACGGTTAAACATATTAACG
* * *
61378304 TGGTGCTAAGTGGATATGCCATGGTTACATGTATTGATTCATTAACG
1 TGGTGCTAAGTGGATATACCACGGTTA-A---A--CA-T-ATTAACG
* *
61378351 TGGTGCTAAGTAGATATACCACGGTTAAACAT-GTAACG
1 TGGTGCTAAGTGGATATACCACGGTTAAACATATTAACG
* * * * *
61378389 TTGTTCTAAGTGGATATGCCACGGTTATACATGTTAA
1 TGGTGCTAAGTGGATATACCACGGTTAAACATATTAA
61378426 TTTGAAAAGT
Statistics
Matches: 97, Mismatches: 15, Indels: 19
0.74 0.11 0.15
Matches are distributed among these distances:
38 56 0.58
39 4 0.04
40 1 0.01
41 1 0.01
42 1 0.01
43 1 0.01
44 1 0.01
45 1 0.01
46 1 0.01
47 30 0.31
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (39 bp):
TGGTGCTAAGTGGATATACCACGGTTAAACATATTAACG
Found at i:61378357 original size:85 final size:85
Alignment explanation
Indices: 61378209--61378415 Score: 279
Period size: 85 Copynumber: 2.4 Consensus size: 85
61378199 ACATAATGAT
* * * *
61378209 ACATGTAACGTGGTGCTAAGTGGATATGCCACAGTTATATAAATTGGTTCATTACCATGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATAAATTGATTCATTAACATGGTGCTA
* *
61378274 AGTGGATATAAAATGGTTAA
66 AGTAGATATAAAACGGTTAA
* * ** *
61378294 ACATTTAACGTGGTGCTAAGTGGATATGCCATGGTTACATGTATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATAAATTGATTCATTAACATGGTGCTA
**
61378359 AGTAGATATACCACGGTTAA
66 AGTAGATATAAAACGGTTAA
* *
61378379 ACATGTAACGTTGTTCTAAGTGGATATGCCACGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
61378416 TACATGTTAA
Statistics
Matches: 105, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
85 105 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATAAATTGATTCATTAACATGGTGCTA
AGTAGATATAAAACGGTTAA
Found at i:61382999 original size:46 final size:45
Alignment explanation
Indices: 61382949--61383121 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
61382939 TGGTTGAGCA
61382949 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
61382995 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
61383040 CATCCGAACTCGTTGAGTTGAGTCCGAG-TCAACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATG-GAATG
*
61383088 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
61383122 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 10, Indels: 24
0.76 0.07 0.17
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 7 0.07
46 56 0.53
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:61383105 original size:93 final size:93
Alignment explanation
Indices: 61382946--61383116 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
61382936 GGATGGTTGA
* *
61382946 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
61383011 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
61383039 GCATCCGAACTCGTTGAGTTGAGTCCGAG-TCAACTTATGGATGTGAACG-CCCAAGCTCGTTGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAACGTCCCAA-CTCGTTGA
61383102 GTTGAGTCCGAGTTC
64 GTTGAGTCCGAGTTC
61383117 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
92 6 0.08
93 67 0.92
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:61389690 original size:40 final size:39
Alignment explanation
Indices: 61389646--61389770 Score: 137
Period size: 40 Copynumber: 3.1 Consensus size: 39
61389636 GGACTCAACT
*
61389646 CGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGTC
1 CGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGTC
* * * *
61389686 CGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGTC
1 CGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGTC
*
61389726 CGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGCC
1 CGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGTC
61389766 CGGAT
1 CGGAT
61389771 ATCATTCGAA
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 63 0.89
41 8 0.11
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGTC
Found at i:61397747 original size:40 final size:39
Alignment explanation
Indices: 61397703--61397828 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
61397693 GGGACTCAAC
*
61397703 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
61397743 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
61397783 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
61397823 CCGGAT
1 CCGGAT
61397829 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:61397787 original size:80 final size:80
Alignment explanation
Indices: 61397642--61397828 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
61397632 GCTACACATT
* * *
61397642 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
61397706 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
61397722 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
61397785 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
61397803 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
61397829 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:61412071 original size:46 final size:45
Alignment explanation
Indices: 61412021--61412193 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
61412011 TGGTTGAGCA
*
61412021 TCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
61412067 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* *
61412112 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
61412160 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
61412194 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.56
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:61412177 original size:93 final size:93
Alignment explanation
Indices: 61412018--61412188 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
61412008 GGATGGTTGA
* *
61412018 GCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61412083 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * *
61412111 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
61412176 TGAGTTCGAGTTC
66 TGAGTCCGAGTTC
61412189 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:61428399 original size:20 final size:20
Alignment explanation
Indices: 61428353--61428399 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
61428343 ATTTTGATAT
*
61428353 ACATGATTGATATGATATGT
1 ACATGATTGATATGATATGC
*
61428373 ACTTGATATG-TATGATATGC
1 ACATGAT-TGATATGATATGC
61428393 ACATGAT
1 ACATGAT
61428400 GTATTCATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (20 bp):
ACATGATTGATATGATATGC
Found at i:61428512 original size:26 final size:26
Alignment explanation
Indices: 61428451--61428572 Score: 185
Period size: 26 Copynumber: 4.7 Consensus size: 26
61428441 GGAAGTGCAT
*
61428451 AAGGGTTTATGCCCCAGTTTATTGAAA
1 AAGGGCTTATGCCCCAGTTTATTG-AA
61428478 AAGGGCTTATGCCCCAGTTTATTGAA
1 AAGGGCTTATGCCCCAGTTTATTGAA
61428504 AAGGGCTTATGCCCCAGTTTATTGAA
1 AAGGGCTTATGCCCCAGTTTATTGAA
* **
61428530 AAGGG-TTTTGCCCCAGTTTACCGAA
1 AAGGGCTTATGCCCCAGTTTATTGAA
61428555 AAGGGCTT-TGCCCCAGTT
1 AAGGGCTTATGCCCCAGTT
61428573 ATTAAAGAGG
Statistics
Matches: 90, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
25 32 0.36
26 35 0.39
27 23 0.26
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.30
Consensus pattern (26 bp):
AAGGGCTTATGCCCCAGTTTATTGAA
Found at i:61428547 original size:25 final size:25
Alignment explanation
Indices: 61428451--61428572 Score: 163
Period size: 25 Copynumber: 4.7 Consensus size: 25
61428441 GGAAGTGCAT
61428451 AAGGGTTTATGCCCCAGTTTATTGAAA
1 AAGGGTTT-TGCCCCAGTTTATTG-AA
*
61428478 AAGGGCTTATGCCCCAGTTTATTGAA
1 AAGGG-TTTTGCCCCAGTTTATTGAA
*
61428504 AAGGGCTTATGCCCCAGTTTATTGAA
1 AAGGG-TTTTGCCCCAGTTTATTGAA
**
61428530 AAGGGTTTTGCCCCAGTTTACCGAA
1 AAGGGTTTTGCCCCAGTTTATTGAA
*
61428555 AAGGGCTTTGCCCCAGTT
1 AAGGGTTTTGCCCCAGTT
61428573 ATTAAAGAGG
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
25 34 0.38
26 33 0.37
27 20 0.22
28 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.30
Consensus pattern (25 bp):
AAGGGTTTTGCCCCAGTTTATTGAA
Found at i:61439569 original size:37 final size:37
Alignment explanation
Indices: 61439519--61439589 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
61439509 TTTAGCTCGA
*
61439519 ATAATCCCCACACGTAGTCATCGGGTCTTACCCGGGC
1 ATAATCCCCACACGTAGCCATCGGGTCTTACCCGGGC
*
61439556 ATAATCTCCACACGTAGCCATCGGGTCTTACCCG
1 ATAATCCCCACACGTAGCCATCGGGTCTTACCCG
61439590 AATATATTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.23, C:0.35, G:0.20, T:0.23
Consensus pattern (37 bp):
ATAATCCCCACACGTAGCCATCGGGTCTTACCCGGGC
Found at i:61439782 original size:48 final size:48
Alignment explanation
Indices: 61439716--61439817 Score: 161
Period size: 48 Copynumber: 2.1 Consensus size: 48
61439706 GGTCATTCGG
*
61439716 CCACAATATTACACATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCAC-ATATTACACATCTCATACATATTTCACACTAGCCATT-GGCTTTA
*
61439766 CCACATA-TACATATCTCATACATATTTCACACTAGCCATTGGCTTTA
1 CCACATATTACACATCTCATACATATTTCACACTAGCCATTGGCTTTA
61439813 CCACA
1 CCACA
61439818 CACATATATA
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
47 12 0.24
48 31 0.62
49 3 0.06
50 4 0.08
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.32
Consensus pattern (48 bp):
CCACATATTACACATCTCATACATATTTCACACTAGCCATTGGCTTTA
Found at i:61443253 original size:28 final size:27
Alignment explanation
Indices: 61443222--61443321 Score: 85
Period size: 28 Copynumber: 3.6 Consensus size: 27
61443212 ACTGACCGAT
*
61443222 CTCGCACACATAGTGCTCGGTTGAAGAA
1 CTCGCACACACAGTGCTCGGTT-AAGAA
** * *
61443250 CTCGCACACACA-TGCCTCAATTACTGAT
1 CTCGCACACACAGTG-CTCGGTTA-AGAA
*
61443278 CTCGCACACATAGTGCTCGGTTAACGAA
1 CTCGCACACACAGTGCTCGGTTAA-GAA
* *
61443306 TTTGCACACACAGTGC
1 CTCGCACACACAGTGC
61443322 CTCTAATCAT
Statistics
Matches: 55, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
27 3 0.05
28 50 0.91
29 2 0.04
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (27 bp):
CTCGCACACACAGTGCTCGGTTAAGAA
Found at i:61443539 original size:43 final size:43
Alignment explanation
Indices: 61443478--61443655 Score: 304
Period size: 43 Copynumber: 4.2 Consensus size: 43
61443468 CCTTGCTCGA
** *
61443478 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
61443521 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
61443564 ATCACCGGCACGAAGCCTGCTAGGCACGAAGG-CCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
61443606 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
61443649 ATCACCG
1 ATCACCG
61443656 AGTTTCATGC
Statistics
Matches: 129, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
42 42 0.33
43 87 0.67
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.12
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:61443625 original size:85 final size:86
Alignment explanation
Indices: 61443478--61443655 Score: 304
Period size: 85 Copynumber: 2.1 Consensus size: 86
61443468 CCTTGCTCGA
**
61443478 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACAAAGCCTGCTA
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACAAAGCCTGCTA
*
61443543 GGCACGAAGGCCCGAATACAT
66 GGCACGAAGGCCCGAATACAC
* *
61443564 ATCACCGGCACGAAGCCTGCTAGGCACGAAG-GCCGAATACATATCACCGGCACGAAGCCTGCTA
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACAAAGCCTGCTA
61443628 GGCACGAAGGCCCGAATACAC
66 GGCACGAAGGCCCGAATACAC
61443649 ATCACCG
1 ATCACCG
61443656 AGTTTCATGC
Statistics
Matches: 87, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
85 58 0.67
86 29 0.33
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.12
Consensus pattern (86 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACAAAGCCTGCTA
GGCACGAAGGCCCGAATACAC
Found at i:61445395 original size:37 final size:36
Alignment explanation
Indices: 61445346--61445416 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 36
61445336 TTTAGCTCGA
*
61445346 ATAATCCCACACGTAGTCATCGGGTCTTACCCGGGC
1 ATAATCCCACACGTAGCCATCGGGTCTTACCCGGGC
61445382 ATAATCTCCACACGTAGCCATCGGGTCTTACCCGG
1 ATAATC-CCACACGTAGCCATCGGGTCTTACCCGG
61445417 AATATATTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 6 0.18
37 27 0.82
ACGTcount: A:0.23, C:0.34, G:0.21, T:0.23
Consensus pattern (36 bp):
ATAATCCCACACGTAGCCATCGGGTCTTACCCGGGC
Found at i:61445610 original size:48 final size:48
Alignment explanation
Indices: 61445550--61445655 Score: 176
Period size: 48 Copynumber: 2.2 Consensus size: 48
61445540 CGGCCACAAT
* *
61445550 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
61445598 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
* *
61445646 ACATATATAT
1 ATATACATAT
61445656 ATTTATCTTG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
Found at i:61449343 original size:28 final size:27
Alignment explanation
Indices: 61449280--61449349 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
61449270 ATAGTGAGTC
*
61449280 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
61449307 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
61449335 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61449350 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:61452223 original size:28 final size:28
Alignment explanation
Indices: 61452192--61452271 Score: 72
Period size: 28 Copynumber: 2.8 Consensus size: 28
61452182 ACTGACCGAT
61452192 CTCGCACACATAGTGCTCGGTTGA-AGAA
1 CTCGCACACATAGTGCTCGGTT-ACAGAA
* * * ** * *
61452220 CTCGAACACACAATGCCTCAATTACTGAT
1 CTCGCACACATAGTG-CTCGGTTACAGAA
61452249 CTCGCACACATAGTGCTCGGTTA
1 CTCGCACACATAGTGCTCGGTTA
61452272 ACGAAATTTG
Statistics
Matches: 38, Mismatches: 12, Indels: 4
0.70 0.22 0.07
Matches are distributed among these distances:
28 19 0.50
29 19 0.50
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.24
Consensus pattern (28 bp):
CTCGCACACATAGTGCTCGGTTACAGAA
Found at i:61452502 original size:27 final size:27
Alignment explanation
Indices: 61452472--61452530 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
61452462 AAGCCTGCTA
61452472 GGCACGAAGACCCGAATACATATCACC
1 GGCACGAAGACCCGAATACATATCACC
*
61452499 GGCACGAAGGCCCGAATACATATCACC
1 GGCACGAAGACCCGAATACATATCACC
61452526 GGCAC
1 GGCAC
61452531 AAAGCCTGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.34, C:0.34, G:0.22, T:0.10
Consensus pattern (27 bp):
GGCACGAAGACCCGAATACATATCACC
Found at i:61455659 original size:40 final size:39
Alignment explanation
Indices: 61455478--61455629 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
61455468 AATGTTCGAG
61455478 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
61455517 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
61455556 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
61455595 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
61455630 GGTTACCATA
Statistics
Matches: 106, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:61461777 original size:38 final size:39
Alignment explanation
Indices: 61461725--61461873 Score: 239
Period size: 38 Copynumber: 3.9 Consensus size: 39
61461715 AATGTTCGAG
61461725 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
61461764 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
61461802 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
61461840 TGATATCCGGGTTAAGTCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCG
61461874 GGTTACCATA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
38 74 0.71
39 30 0.29
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:61464036 original size:48 final size:48
Alignment explanation
Indices: 61463976--61464081 Score: 158
Period size: 48 Copynumber: 2.2 Consensus size: 48
61463966 CGGCCACAAT
* *
61463976 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
* *
61464024 ATATACATATCTCATACATATTTCATACTAGCCATTCGGCTTTTCCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
* *
61464072 ACATATATAT
1 ATATACATAT
61464082 ATTTATCTTG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
Found at i:61470326 original size:27 final size:28
Alignment explanation
Indices: 61470266--61470335 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
61470256 AAATTTGTAC
61470266 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
* *
61470294 AACACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
61470321 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
61470336 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:61470346 original size:27 final size:27
Alignment explanation
Indices: 61470268--61470347 Score: 65
Period size: 27 Copynumber: 2.9 Consensus size: 27
61470258 ATTTGTACAG
* *
61470268 CACTAAGTGTGCGAGTTTGA-TCATATAA
1 CACTAAGTGTGCGAG-CTCACT-ATATAA
* * * *
61470296 CACTAAGTGTGCGAGTTGATTATATAG
1 CACTAAGTGTGCGAGCTCACTATATAA
61470323 CACTAAGTGTGCG-GACTCACTATAT
1 CACTAAGTGTGCGAG-CTCACTATAT
61470348 GCTTTTGAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.63
28 16 0.35
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (27 bp):
CACTAAGTGTGCGAGCTCACTATATAA
Found at i:61473500 original size:40 final size:40
Alignment explanation
Indices: 61473455--61473662 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 40
61473445 CGGAATACAA
* * *
61473455 CCGGATATAACCACATGCACGAAGGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * * *
61473495 CCGGATAGAACGACTTGCACAAATGCCTTTGGGTATTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* *
61473535 CCGGATTTAACAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
61473575 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
** * * * *
61473615 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
61473655 CCGGATAT
1 CCGGATAT
61473663 CATTCAATTG
Statistics
Matches: 141, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:61481584 original size:40 final size:40
Alignment explanation
Indices: 61481539--61481746 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
61481529 CGGAATACAA
* *
61481539 CCGGATATAACCACATGCACGAAGGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * * *
61481579 CCGGATAGAACGACTTGCACAAATGCCTTTGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
61481619 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
61481659 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
** * ** * *
61481699 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
61481739 CCGGATAT
1 CCGGATAT
61481747 CATTCAATTG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:61489301 original size:55 final size:49
Alignment explanation
Indices: 61489152--61489421 Score: 414
Period size: 49 Copynumber: 5.4 Consensus size: 49
61489142 TACATATATG
* * * * *
61489152 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
61489201 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
61489250 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
61489299 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAA--G--TG--TATGTATA
61489354 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
61489403 TGTGATAAGGCCTAATGGC
1 TGTGATGAGGCCTAATGGC
61489422 TAATGTAAAA
Statistics
Matches: 209, Mismatches: 6, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
49 157 0.75
51 3 0.01
53 3 0.01
55 46 0.22
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.30
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:61489599 original size:37 final size:36
Alignment explanation
Indices: 61489517--61489605 Score: 135
Period size: 37 Copynumber: 2.4 Consensus size: 36
61489507 AAACTTGGAA
*
61489517 TATGTTCCGGGTGAGA-CCGATGACTACGTGTGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGAGAT
*
61489553 TATGACCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGT-GAGAT
61489590 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
61489606 TTCTTTTATA
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
35 9 0.19
36 19 0.40
37 20 0.42
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.25
Consensus pattern (36 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGAGAT
Found at i:61493416 original size:27 final size:27
Alignment explanation
Indices: 61493384--61493452 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
61493374 AAATTTGTAC
61493384 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAG-TTGATCATAT
*
61493412 A-CACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATCATAT
61493438 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
61493453 GACTCACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
26 10 0.26
27 28 0.72
28 1 0.03
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATCATAT
Found at i:61493463 original size:27 final size:26
Alignment explanation
Indices: 61493386--61493464 Score: 63
Period size: 27 Copynumber: 3.0 Consensus size: 26
61493376 ATTTGTACAG
* *
61493386 CACTAAGTGTGCGAGTTTGA-TCATATA
1 CACTAAGTGTGCGAG-CTCACT-ATATA
* * *
61493413 CACTAAGTGTGCGAGTTGATTATATA
1 CACTAAGTGTGCGAGCTCACTATATA
61493439 GCACTAAGTGTGCG-GACTCACTATAT
1 -CACTAAGTGTGCGAG-CTCACTATAT
61493465 GCTTTTGAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
26 10 0.22
27 36 0.78
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (26 bp):
CACTAAGTGTGCGAGCTCACTATATA
Found at i:61495232 original size:11 final size:11
Alignment explanation
Indices: 61495218--61495255 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
61495208 CCACCCAAAA
61495218 ACCACCATATC
1 ACCACCATATC
61495229 ACCACCATA-C
1 ACCACCATATC
61495239 AACCACCATATC
1 -ACCACCATATC
61495251 ACCAC
1 ACCAC
61495256 AATTCAACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.04
11 23 0.92
12 1 0.04
ACGTcount: A:0.39, C:0.47, G:0.00, T:0.13
Consensus pattern (11 bp):
ACCACCATATC
Found at i:61495234 original size:22 final size:23
Alignment explanation
Indices: 61495206--61495255 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 23
61495196 ACAGCCGAAA
61495206 CACCACCCA-AAAACCACCATAT
1 CACCACCCATAAAACCACCATAT
*
61495228 CACCA-CCATACAACCACCATAT
1 CACCACCCATAAAACCACCATAT
61495250 CACCAC
1 CACCAC
61495256 AATTCAACTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 3 0.12
22 22 0.88
ACGTcount: A:0.42, C:0.48, G:0.00, T:0.10
Consensus pattern (23 bp):
CACCACCCATAAAACCACCATAT
Found at i:61495263 original size:22 final size:22
Alignment explanation
Indices: 61495217--61495263 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
61495207 ACCACCCAAA
*
61495217 AACCACCATATCACCACCATAC
1 AACCACCATATCACCACAATAC
*
61495239 AACCACCATATCACCACAATTC
1 AACCACCATATCACCACAATAC
61495261 AAC
1 AAC
61495264 TATCTTACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.15
Consensus pattern (22 bp):
AACCACCATATCACCACAATAC
Found at i:61495285 original size:33 final size:33
Alignment explanation
Indices: 61495229--61495322 Score: 91
Period size: 33 Copynumber: 2.8 Consensus size: 33
61495219 CCACCATATC
* * * *
61495229 ACCACCATACAACCACCATATCACCACAATTCA
1 ACCACCTTACCACCAACACATCACCACAATTCA
* *
61495262 ACTATCTTACCACCAACACATCACCATC-ATTCA
1 ACCACCTTACCACCAACACATCACCA-CAATTCA
* * *
61495295 ACCACCTTAGCACCACCACACCACCACA
1 ACCACCTTACCACCAACACATCACCACA
61495323 TCATAATCGT
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
32 1 0.02
33 46 0.96
34 1 0.02
ACGTcount: A:0.38, C:0.45, G:0.01, T:0.16
Consensus pattern (33 bp):
ACCACCTTACCACCAACACATCACCACAATTCA
Found at i:61523175 original size:46 final size:46
Alignment explanation
Indices: 61523055--61523176 Score: 208
Period size: 46 Copynumber: 2.7 Consensus size: 46
61523045 AACCCGCCCC
* * * *
61523055 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
61523101 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
61523147 TAAGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
61523177 GGATGCTCAA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:61528601 original size:93 final size:93
Alignment explanation
Indices: 61528494--61528664 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
61528484 GCCCCTAAGT
* *
61528494 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
61528559 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
61528587 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
61528652 CGAGTTCGGATGC
66 CGAGTTCGGATGC
61528665 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:61528661 original size:46 final size:46
Alignment explanation
Indices: 61528489--61528661 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
61528479 AACCCGCCCC
* * *
61528489 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
*
61528535 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACATCCA
* * *
61528583 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
61528628 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
61528662 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
Found at i:61564543 original size:40 final size:39
Alignment explanation
Indices: 61564378--61564561 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
61564368 AAATTGAATG
* * *
61564378 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
61564418 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
61564458 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
61564498 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
61564537 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
61564562 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:61564586 original size:80 final size:81
Alignment explanation
Indices: 61564418--61564606 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
61564408 GCTGGAAATT
* * * *
61564418 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
61564483 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
61564499 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
61564562 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
61564578 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
61564607 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:61569589 original size:22 final size:22
Alignment explanation
Indices: 61569564--61569605 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
61569554 TACGAACATG
*
61569564 ATTAATTTTAATTAATTTTAAA
1 ATTAATTTTAATGAATTTTAAA
*
61569586 ATTAATTTTGATGAATTTTA
1 ATTAATTTTAATGAATTTTA
61569606 GTTATTTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (22 bp):
ATTAATTTTAATGAATTTTAAA
Found at i:61571895 original size:14 final size:14
Alignment explanation
Indices: 61571876--61571903 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
61571866 GGTTTAAGCG
61571876 GTTTCAATTCTACA
1 GTTTCAATTCTACA
61571890 GTTTCAATTCTACA
1 GTTTCAATTCTACA
61571904 ATATTATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (14 bp):
GTTTCAATTCTACA
Found at i:61582275 original size:16 final size:18
Alignment explanation
Indices: 61582236--61582273 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
61582226 TGAAAATGTC
61582236 AAAAGGACCAATTTGTAA
1 AAAAGGACCAATTTGTAA
61582254 AAAAGG-CCAATTTGTAA
1 AAAAGGACCAATTTGTAA
61582271 AAA
1 AAA
61582274 GGTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.21
Consensus pattern (18 bp):
AAAAGGACCAATTTGTAA
Found at i:61582832 original size:42 final size:41
Alignment explanation
Indices: 61582773--61582928 Score: 186
Period size: 42 Copynumber: 3.7 Consensus size: 41
61582763 ACTAAGACAA
*
61582773 TGTGTAAGACCATATCTGGGATATGGCATCGATATGAAACTT
1 TGTGTAAGACCATATCTGGGATATGGCATCGATATGAGA-TT
* *
61582815 TGTGTAAGACCATATCTGGGATATGACATCGATGTGAGATT
1 TGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATT
* * *
61582856 TCGTGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATT
1 T-GTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATT
** * *
61582899 ACATGTAAGACCATATTTGGGATGTGGCAT
1 -TGTGTAAGACCATATCTGGGATATGGCAT
61582929 TGGTATGGTA
Statistics
Matches: 97, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
41 3 0.03
42 62 0.64
43 32 0.33
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (41 bp):
TGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATT
Done.