Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 201 of 325
Found at i:62273149 original size:93 final size:93
Alignment explanation
Indices: 62272990--62273160 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
62272980 GGATGGTTGA
* * *
62272990 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
62273055 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
62273083 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62273148 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
62273161 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:62277429 original size:19 final size:19
Alignment explanation
Indices: 62277405--62277441 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
62277395 TGATGCAAGA
62277405 GGGTCGAGTTATGGCTTAC
1 GGGTCGAGTTATGGCTTAC
62277424 GGGTCGAGTTATGGCTTA
1 GGGTCGAGTTATGGCTTA
62277442 AGCGTCGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.14, G:0.38, T:0.32
Consensus pattern (19 bp):
GGGTCGAGTTATGGCTTAC
Found at i:62277448 original size:19 final size:19
Alignment explanation
Indices: 62277407--62277450 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
62277397 ATGCAAGAGG
* *
62277407 GTCGAGTTATGGCTTACGG
1 GTCGAGTTATGGCTTAAGC
62277426 GTCGAGTTATGGCTTAAGC
1 GTCGAGTTATGGCTTAAGC
62277445 GTCGAG
1 GTCGAG
62277451 GCAATTGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.18, C:0.16, G:0.36, T:0.30
Consensus pattern (19 bp):
GTCGAGTTATGGCTTAAGC
Found at i:62280445 original size:2 final size:2
Alignment explanation
Indices: 62280438--62280472 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
62280428 CAATTACGTG
62280438 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
62280473 GTGCATTCGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:62281328 original size:38 final size:38
Alignment explanation
Indices: 62281286--62281395 Score: 130
Period size: 42 Copynumber: 2.7 Consensus size: 38
62281276 TCGATATATT
*
62281286 ATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTCATA
1 ATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGG---TA
*
62281327 TATATATCCGGGTTAAATCCTGCAGGCTTAGTGCTGGTA
1 -ATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
* *
62281366 CTATATCCGGGCTTAAAGTTCCGCAGGCTT
1 ATATATCCGGG-TTAAA-TCCCGCAGGCTT
62281396 TGAGCTAGTG
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
38 10 0.16
39 7 0.11
40 10 0.16
42 34 0.56
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.31
Consensus pattern (38 bp):
ATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
Found at i:62281371 original size:42 final size:42
Alignment explanation
Indices: 62281285--62281364 Score: 142
Period size: 42 Copynumber: 1.9 Consensus size: 42
62281275 CTCGATATAT
*
62281285 TATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTCATA
1 TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTCATA
*
62281327 TATATATCCGGGTTAAATCCTGCAGGCTTAGTGCTGGT
1 TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGT
62281365 ACTATATCCG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (42 bp):
TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTCATA
Found at i:62284100 original size:21 final size:21
Alignment explanation
Indices: 62284074--62284114 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
62284064 CAAAATTAAC
62284074 TAATTTAAT-CACTAACACATT
1 TAATTTAATACAC-AACACATT
62284095 TAATTTAATACACAACACAT
1 TAATTTAATACACAACACAT
62284115 CTTTGGGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (21 bp):
TAATTTAATACACAACACATT
Found at i:62285766 original size:21 final size:22
Alignment explanation
Indices: 62285742--62285787 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
62285732 TTTATCATCT
*
62285742 TTTAATTATTCTCA-TTTCTAA
1 TTTAATTATTATCATTTTCTAA
* *
62285763 TTTAGTTCTTATCATTTTCTAA
1 TTTAATTATTATCATTTTCTAA
62285785 TTT
1 TTT
62285788 TTCCATGGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.24, C:0.13, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTAATTATTATCATTTTCTAA
Found at i:62292471 original size:16 final size:16
Alignment explanation
Indices: 62292415--62292471 Score: 71
Period size: 16 Copynumber: 3.6 Consensus size: 16
62292405 CACGACTCGT
*
62292415 TTTATTTATTATTT-TC
1 TTTATTT-TTATTTCTA
* *
62292431 TTTACTTTTATATCTA
1 TTTATTTTTATTTCTA
62292447 TTTATTTTTATTTCTA
1 TTTATTTTTATTTCTA
62292463 TTTATTTTT
1 TTTATTTTT
62292472 GAAGACTCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
15 5 0.14
16 30 0.86
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTATTTTTATTTCTA
Found at i:62294843 original size:49 final size:47
Alignment explanation
Indices: 62294720--62294862 Score: 178
Period size: 49 Copynumber: 2.9 Consensus size: 47
62294710 CCAATGTGAG
* *
62294720 GTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGAAAACTGT
1 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CC--AGACTGT
* * *
62294770 GATCGCGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
1 G-TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTG-T
*
62294819 CGTCGCATGTGTAGTGCTAAGTGCAGGCTACTATGCGTACCAGA
1 -GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
62294863 TAGCTTCGGC
Statistics
Matches: 81, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
48 5 0.06
49 39 0.48
50 4 0.05
51 33 0.41
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (47 bp):
GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTGT
Found at i:62299905 original size:40 final size:40
Alignment explanation
Indices: 62299740--62299907 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
62299730 AAATTGAATG
* * * * **
62299740 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGATT
* * * **
62299780 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
62299820 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
62299860 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATT
62299900 ATATCCGG
1 ATATCCGG
62299908 TTATATTCCG
Statistics
Matches: 105, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 104 0.99
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:62307644 original size:40 final size:40
Alignment explanation
Indices: 62307537--62307646 Score: 139
Period size: 40 Copynumber: 2.8 Consensus size: 40
62307527 TTCACAATTT
* * *
62307537 GCACAAATGCCTTCGGGTCTTAGCCCAGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
62307577 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
62307617 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
62307647 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:62309591 original size:46 final size:45
Alignment explanation
Indices: 62309539--62309713 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
62309529 TGTAACCCGC
*
62309539 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
* *
62309585 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGTAT
* * * * * * * *
62309631 ACATCTCA-CGAACTCGGACTCAACCCAACGAGTTCTGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
*
62309678 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
62309714 ATGCCCAAAT
Statistics
Matches: 104, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
45 3 0.03
46 66 0.63
47 31 0.30
48 4 0.04
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGTAT
Found at i:62309680 original size:93 final size:93
Alignment explanation
Indices: 62309547--62309718 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
62309537 GCCCATAAGT
* * * *
62309547 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACCCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
62309612 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* * *
62309640 GAACTCGGACTCAACCCAACGAGTTCTGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACCCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
62309705 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
62309719 CAAATATCCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACCCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:62309733 original size:46 final size:45
Alignment explanation
Indices: 62309590--62309720 Score: 122
Period size: 47 Copynumber: 2.8 Consensus size: 45
62309580 CGTATCCATA
* *
62309590 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-C
* * * * * * *
62309638 A-CGAACTCGGACTCAACCCAACGAGTTCTGACATTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGCCCATACATCC
62309683 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA
62309721 AATATCCCAG
Statistics
Matches: 66, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
44 5 0.08
45 2 0.03
46 25 0.38
47 28 0.42
48 2 0.03
49 4 0.06
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCC
Found at i:62314357 original size:29 final size:29
Alignment explanation
Indices: 62314325--62314397 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
62314315 CTTCGAGCTC
*
62314325 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
62314354 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
62314383 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
62314398 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:62316437 original size:28 final size:28
Alignment explanation
Indices: 62316376--62316473 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
62316366 TCACAAATTG
** * *
62316376 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
62316405 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
62316433 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
62316461 GCACTAAGTGTGC
1 GCACTAAGTGTGC
62316474 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:62320005 original size:52 final size:52
Alignment explanation
Indices: 62319920--62320022 Score: 143
Period size: 52 Copynumber: 2.0 Consensus size: 52
62319910 TACCACTAAA
* * *
62319920 TGTAACGCCCCATACCCGAGACCATTGCCGGAGTCGAACACGAGGTGTTAAC
1 TGTAACACCCCATACCCGAGACCATCGCCGGAGTCGAACACGAGGGGTTAAC
* * * *
62319972 TGTAACACCCCGTACCCGAGACCGTCGCTGGAGTCGGACACGAGGGGTTAA
1 TGTAACACCCCATACCCGAGACCATCGCCGGAGTCGAACACGAGGGGTTAA
62320023 TGGGCTTAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.17
Consensus pattern (52 bp):
TGTAACACCCCATACCCGAGACCATCGCCGGAGTCGAACACGAGGGGTTAAC
Found at i:62321831 original size:40 final size:40
Alignment explanation
Indices: 62321787--62321972 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
62321777 GCTACTCGTT
* ** *
62321787 CAAATGCCTTCGGGACATGGCCCGG-TTATAGTAACCCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
62321827 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
62321867 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * *
62321907 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
** *
62321948 CAAA-GCCTTCGAAACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
62321973 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:62324995 original size:93 final size:93
Alignment explanation
Indices: 62324882--62325053 Score: 285
Period size: 93 Copynumber: 1.8 Consensus size: 93
62324872 GCCCATAAGT
*
62324882 GAACTCGGACTCAACTCAACGAGCTC-GAGC-TTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 GAACTCGGACTCAACCCAACGAGCTCGGA-CATTT-GCATCCATAAGTGAACTCGGACTCAACTC
62324945 AACGAGCTCGGATGCCTAGTTACATCTCAC
64 AACGAGCTCGGATGCCTAGTTACATCTCAC
*
62324975 GAACTCGGACTCAACCCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACCCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
*
62325040 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
62325054 CAAATATCCC
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
93 69 0.93
94 5 0.07
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACCCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:62325044 original size:46 final size:47
Alignment explanation
Indices: 62324874--62325049 Score: 211
Period size: 46 Copynumber: 3.8 Consensus size: 47
62324864 TGTAACCCGC
62324874 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGC-TTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTT-GCAT
* *
62324920 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-G-C-ATTTGCAT
* * * *
62324970 -C-TCA-CGAACTCGGACTCAACCCAACGAGTTCGGA-CATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTTGCAT
*
62325013 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
62325050 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTTGCAT
Found at i:62332806 original size:28 final size:27
Alignment explanation
Indices: 62332743--62332812 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
62332733 ATAGTGAGTC
62332743 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
62332770 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
62332798 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62332813 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:62337607 original size:40 final size:40
Alignment explanation
Indices: 62337562--62337691 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
62337552 CGGAATACAA
62337562 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
62337602 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
62337642 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
62337682 CCGGATATAA
1 CCGGATATAA
62337692 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:62337706 original size:40 final size:40
Alignment explanation
Indices: 62337562--62337725 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
62337552 CGGAATACAA
* **
62337562 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
62337602 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
62337642 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
62337682 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
62337722 CCGG
1 CCGG
62337726 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:62343854 original size:28 final size:27
Alignment explanation
Indices: 62343791--62343860 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
62343781 ATAGTGAGTC
62343791 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
62343818 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
62343846 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62343861 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:62345943 original size:53 final size:53
Alignment explanation
Indices: 62345845--62345977 Score: 185
Period size: 53 Copynumber: 2.5 Consensus size: 53
62345835 ATCTTACGGC
* *
62345845 GGGATTACCAATCCAGGCTAATTCTCCCATAATATCAACTCATAGGGTGATGTT
1 GGGATTACCAATACAGGCTAAATC-CCCATAATATCAACTCATAGGGTGATGTT
* ** *
62345899 GGGATTACCAGTTTAGGCTAAATCCCCGTAATATCAACTCATAGGGTGATGTT
1 GGGATTACCAATACAGGCTAAATCCCCATAATATCAACTCATAGGGTGATGTT
* *
62345952 AGGATTACTAATACAGGCTAAATCCC
1 GGGATTACCAATACAGGCTAAATCCC
62345978 TTGTAGCGAG
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
53 49 0.71
54 20 0.29
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.29
Consensus pattern (53 bp):
GGGATTACCAATACAGGCTAAATCCCCATAATATCAACTCATAGGGTGATGTT
Found at i:62348009 original size:24 final size:24
Alignment explanation
Indices: 62347977--62348051 Score: 132
Period size: 24 Copynumber: 3.1 Consensus size: 24
62347967 GTCTGTCAGT
*
62347977 AGAGGATTTAGGAGCTAATAAGGG
1 AGAGGATTTAGGAGCTGATAAGGG
62348001 AGAGGATTTAGGAGCTGATAAGGG
1 AGAGGATTTAGGAGCTGATAAGGG
*
62348025 AGAGGATTTAGGAGCTGATTAGGG
1 AGAGGATTTAGGAGCTGATAAGGG
62348049 AGA
1 AGA
62348052 AAAATGTTGG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.35, C:0.04, G:0.40, T:0.21
Consensus pattern (24 bp):
AGAGGATTTAGGAGCTGATAAGGG
Found at i:62349564 original size:26 final size:26
Alignment explanation
Indices: 62349457--62349567 Score: 141
Period size: 27 Copynumber: 4.2 Consensus size: 26
62349447 AGGAAGCATC
** *
62349457 CTGGTGGCAATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
62349484 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
62349511 CTGGTGGCTCTGCCACGATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* **
62349538 CTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
62349564 CTGG
1 CTGG
62349568 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 16 0.21
27 58 0.76
28 2 0.03
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:62351726 original size:77 final size:78
Alignment explanation
Indices: 62351631--62351781 Score: 250
Period size: 77 Copynumber: 1.9 Consensus size: 78
62351621 AATGTTCGAG
*
62351631 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTCA-CCCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
62351695 ATTGTGCGAGCTA
66 ATTGTGCGAGCTA
* *
62351708 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGC
*
62351773 ATTTGTGCG
65 AATTGTGCG
62351782 GGTTACCATA
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 51 0.75
79 17 0.25
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
ATTGTGCGAGCTA
Found at i:62351739 original size:39 final size:39
Alignment explanation
Indices: 62351630--62351781 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
62351620 GAATGTTCGA
*
62351630 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
62351669 GTGATATCCGGGCTCA-CCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
62351707 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
62351746 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
62351782 GGTTACCATA
Statistics
Matches: 102, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
38 34 0.33
39 51 0.50
40 17 0.17
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:62351797 original size:40 final size:40
Alignment explanation
Indices: 62351631--62351811 Score: 226
Period size: 39 Copynumber: 4.6 Consensus size: 40
62351621 AATGTTCGAG
* *
62351631 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* *
62351670 TGATATCCGGGCTCA--CCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
*
62351708 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* * *
62351747 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
** * *
62351787 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAGTCCCGAAGG
62351812 TGTTTTGAAC
Statistics
Matches: 124, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
38 34 0.27
39 50 0.40
40 40 0.32
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (40 bp):
TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
Found at i:62361369 original size:23 final size:22
Alignment explanation
Indices: 62361342--62361397 Score: 76
Period size: 23 Copynumber: 2.5 Consensus size: 22
62361332 GAGATGTTAC
62361342 GTTTATTGGTATTAGAGCAAGA
1 GTTTATTGGTATTAGAGCAAGA
* *
62361364 GATTTATCGGTATTGGAGCAAGA
1 G-TTTATTGGTATTAGAGCAAGA
62361387 GTTTAGTTGGT
1 GTTTA-TTGGT
62361398 TCTCAGAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.17
23 24 0.83
ACGTcount: A:0.27, C:0.05, G:0.30, T:0.38
Consensus pattern (22 bp):
GTTTATTGGTATTAGAGCAAGA
Found at i:62365103 original size:46 final size:46
Alignment explanation
Indices: 62365036--62365201 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 46
62365026 GCCCCTAACT
* *
62365036 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGG
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGC
* * *
62365082 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCATAAGC
* * *
62365129 GAACTCGGACTCAAC-CAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGC
62365174 GAACTCGGACTCAACTCAACGAGTTCGG
1 GAACTCGGACTCAACTCAACGAGTTCGG
62365202 ATGCTCAACC
Statistics
Matches: 99, Mismatches: 11, Indels: 20
0.76 0.08 0.15
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 1 0.01
44 2 0.02
45 15 0.15
46 51 0.52
47 15 0.15
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGC
Found at i:62365166 original size:92 final size:93
Alignment explanation
Indices: 62365036--62365205 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
62365026 GCCCCTAACT
* *
62365036 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGGGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGGGAACTCGGACTCAACTCAA
62365101 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
62365129 GAACTCGGACTCAAC-CAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGGGAACTCGGACTCAACTCAA
62365193 CGAGTTCGGATGC
66 CGAGTTCGGATGC
62365206 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 58 0.79
93 15 0.21
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGGGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:62365221 original size:46 final size:46
Alignment explanation
Indices: 62365030--62365214 Score: 125
Period size: 46 Copynumber: 4.0 Consensus size: 46
62365020 TAACCCGCCC
* * ** * *
62365030 CTAACTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
*
62365074 CCATAAGGGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CAT
1 -C-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCAT
* * * * * *
62365124 TTCA-CGAACTCGGACTCAAC-CAACGAGTTCGGACATTCGCATCCA-
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCAT
62365169 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
62365214 C
1 C
62365215 CTAGTGACAT
Statistics
Matches: 109, Mismatches: 16, Indels: 29
0.71 0.10 0.19
Matches are distributed among these distances:
44 10 0.09
45 17 0.16
46 57 0.52
47 15 0.14
48 6 0.06
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
Found at i:62365657 original size:30 final size:30
Alignment explanation
Indices: 62365623--62365682 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
62365613 ATTTAATACG
62365623 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
62365653 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
62365683 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:62369212 original size:40 final size:39
Alignment explanation
Indices: 62369167--62369374 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
62369157 CGGAATACAA
*
62369167 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
62369207 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
62369247 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
62369287 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* ** * * *
62369327 CCAGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
62369367 CCGGATAT
1 CCGGATAT
62369375 CATTCAATTG
Statistics
Matches: 140, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
39 1 0.01
40 139 0.99
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:62369307 original size:80 final size:81
Alignment explanation
Indices: 62369167--62369372 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 81
62369157 CGGAATACAA
* * *
62369167 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
62369231 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
62369247 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
62369310 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* ** * ** * *
62369327 CCAGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
62369373 ATCATTCAAT
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 103 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:62377288 original size:40 final size:39
Alignment explanation
Indices: 62377243--62377450 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
62377233 CGGAATACAA
*
62377243 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
62377283 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
62377323 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
62377363 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
62377403 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
62377443 CCGGATAT
1 CCGGATAT
62377451 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:62377383 original size:80 final size:81
Alignment explanation
Indices: 62377243--62377448 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
62377233 CGGAATACAA
* * *
62377243 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
62377307 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
62377323 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
62377386 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
62377403 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
62377449 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:62385336 original size:40 final size:40
Alignment explanation
Indices: 62385291--62385457 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
62385281 CGGAATATAA
62385291 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
62385331 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
62385371 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
62385411 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
62385450 CCGGATAT
1 CCGGATAT
62385458 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:62385441 original size:80 final size:79
Alignment explanation
Indices: 62385291--62385457 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
62385281 CGGAATATAA
* *
62385291 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
62385356 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
62385371 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
62385433 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
62385450 CCGGATAT
1 CCGGATAT
62385458 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:62386306 original size:17 final size:19
Alignment explanation
Indices: 62386283--62386328 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
62386273 AAGAAGCATG
62386283 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
62386301 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
62386319 AATCATGCTC
1 AATCATGCTC
62386329 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:62387540 original size:39 final size:39
Alignment explanation
Indices: 62387422--62387604 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
62387412 TCGTTCAAAC
* * ** * **
62387422 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
62387462 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
62387502 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
62387541 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
62387580 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
62387605 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:62401733 original size:33 final size:33
Alignment explanation
Indices: 62401694--62401770 Score: 138
Period size: 33 Copynumber: 2.4 Consensus size: 33
62401684 AATGATCAAT
62401694 ATAATAATACAAGAATGCAAATAATATGCCACA
1 ATAATAATACAAGAATGCAAATAATATGCCACA
*
62401727 ATAATAACACAAGAATGCAAATAATATGCCACA
1 ATAATAATACAAGAATGCAAATAATATGCCACA
62401760 ATAA-AATACAA
1 ATAATAATACAA
62401771 AGCCTAGTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
32 6 0.14
33 36 0.86
ACGTcount: A:0.57, C:0.16, G:0.08, T:0.19
Consensus pattern (33 bp):
ATAATAATACAAGAATGCAAATAATATGCCACA
Found at i:62405464 original size:40 final size:39
Alignment explanation
Indices: 62405299--62405482 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
62405289 AAATTGAATG
* * *
62405299 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
62405339 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
62405379 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
62405419 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
62405458 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
62405483 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:62405507 original size:80 final size:81
Alignment explanation
Indices: 62405339--62405527 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
62405329 GCTGGAAATT
* * * *
62405339 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
62405404 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
62405420 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
62405483 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
62405499 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
62405528 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:62413580 original size:40 final size:39
Alignment explanation
Indices: 62413415--62413598 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
62413405 AAATTGAATG
* * *
62413415 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
62413455 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
62413495 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
62413535 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
62413574 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
62413599 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:62413623 original size:80 final size:81
Alignment explanation
Indices: 62413455--62413643 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
62413445 GCTGGAAATT
* * * *
62413455 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
62413520 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
62413536 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
62413599 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
62413615 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
62413644 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:62415072 original size:22 final size:22
Alignment explanation
Indices: 62415044--62415086 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
62415034 GGGTGTTACA
* *
62415044 GTACGGATGTGTGCCGGAGGCC
1 GTACGGAGGCGTGCCGGAGGCC
*
62415066 GTACGGAGGCGTGCTGGAGGC
1 GTACGGAGGCGTGCCGGAGGC
62415087 TAGGGCTGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.14, C:0.21, G:0.49, T:0.16
Consensus pattern (22 bp):
GTACGGAGGCGTGCCGGAGGCC
Found at i:62425547 original size:25 final size:25
Alignment explanation
Indices: 62425518--62425565 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
62425508 TTATAACATG
* * *
62425518 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
62425543 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
62425566 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:62425616 original size:9 final size:9
Alignment explanation
Indices: 62425604--62425660 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
62425594 TTTGATGGAC
62425604 ATGATATGT
1 ATGATATGT
*
62425613 ATGATATGCAC
1 ATGATATG--T
*
62425624 ATGACATGT
1 ATGATATGT
*
62425633 ATGATATGCAC
1 ATGATATG--T
62425644 ATGATATGT
1 ATGATATGT
62425653 ATGATATG
1 ATGATATG
62425661 CACATGATGT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:62425627 original size:20 final size:20
Alignment explanation
Indices: 62425602--62425668 Score: 125
Period size: 20 Copynumber: 3.4 Consensus size: 20
62425592 ATTTTGATGG
62425602 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
62425622 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
62425642 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
62425662 ACATGAT
1 ACATGAT
62425669 GTAATCATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:62425649 original size:11 final size:11
Alignment explanation
Indices: 62425613--62425668 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
62425603 CATGATATGT
62425613 ATGATATGCAC
1 ATGATATGCAC
* *
62425624 ATGACATG--T
1 ATGATATGCAC
62425633 ATGATATGCAC
1 ATGATATGCAC
*
62425644 ATGATATG--T
1 ATGATATGCAC
62425653 ATGATATGCAC
1 ATGATATGCAC
62425664 ATGAT
1 ATGAT
62425669 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:62425749 original size:23 final size:22
Alignment explanation
Indices: 62425719--62425836 Score: 148
Period size: 23 Copynumber: 5.1 Consensus size: 22
62425709 AGGAAGTGAA
62425719 AAAGGGCTTATGCCTCAGTTATT
1 AAAGGGCTTATGCC-CAGTTATT
62425742 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATG-CCCAGTTATT
62425765 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCC-AGTTATT
* *
62425788 AAAAGTCTTATGCCCAGTTATT
1 AAAGGGCTTATGCCCAGTTATT
*
62425810 AAAAGGGCTCT-TGCCCCAGTGATT
1 -AAAGGGCT-TATG-CCCAGTTATT
62425834 AAA
1 AAA
62425837 AGAGGCTAGG
Statistics
Matches: 85, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
22 10 0.12
23 63 0.74
24 12 0.14
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.31
Consensus pattern (22 bp):
AAAGGGCTTATGCCCAGTTATT
Found at i:62433663 original size:40 final size:39
Alignment explanation
Indices: 62433498--62433681 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
62433488 AAATTGAATG
* * *
62433498 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
62433538 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
62433578 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
62433618 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
62433657 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
62433682 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:62433706 original size:80 final size:81
Alignment explanation
Indices: 62433538--62433726 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
62433528 GCTGGAAATT
* * * *
62433538 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
62433603 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
62433619 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
62433682 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
62433698 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
62433727 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:62437794 original size:27 final size:28
Alignment explanation
Indices: 62437738--62437807 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
62437728 AAATTTGTAC
62437738 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
62437766 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
62437793 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
62437808 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:62437818 original size:27 final size:27
Alignment explanation
Indices: 62437738--62437819 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
62437728 AAATTTGTAC
* *
62437738 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
62437766 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
62437793 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
62437820 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:62445592 original size:27 final size:28
Alignment explanation
Indices: 62445536--62445605 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
62445526 AAATTTGTAC
62445536 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
62445564 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
62445591 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
62445606 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:62445616 original size:27 final size:27
Alignment explanation
Indices: 62445536--62445617 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
62445526 AAATTTGTAC
* *
62445536 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
62445564 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
62445591 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
62445618 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:62453988 original size:55 final size:53
Alignment explanation
Indices: 62453906--62454150 Score: 234
Period size: 55 Copynumber: 4.6 Consensus size: 53
62453896 ATTAGGGTTT
62453906 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * * * * *
62453961 AAGGAAATCATGTAAGACCATGTCAAGAGATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * * *
62454016 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGC
* *
62454069 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-CA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTTCTAAGGC
* * *
62454118 AAGGATACCACGTAAGACCATGACAAGTCATGG
1 AAGGATACCATGTAAGACCATGCCAAGACATGG
62454151 CAATAAGGTA
Statistics
Matches: 158, Mismatches: 25, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
49 30 0.19
52 6 0.04
53 40 0.25
54 12 0.08
55 66 0.42
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:62454089 original size:53 final size:53
Alignment explanation
Indices: 62453906--62454113 Score: 249
Period size: 55 Copynumber: 3.8 Consensus size: 53
62453896 ATTAGGGTTT
*
62453906 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCATAAGGC
* * * * *
62453961 AAGGAAATCATGTAAGACCATGTCAAGAGATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
62454016 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* *
62454069 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
62454114 TCCAAAGGAT
Statistics
Matches: 129, Mismatches: 19, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
52 6 0.05
53 44 0.34
54 8 0.06
55 67 0.52
56 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:62454112 original size:108 final size:110
Alignment explanation
Indices: 62453913--62454113 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
62453903 TTTAAGGATA
*
62453913 CCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
62453978 CCATGTCAAGAGATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * * *
62454023 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
62454085 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
62454114 TCCAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.09
110 25 0.30
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:62461275 original size:19 final size:19
Alignment explanation
Indices: 62461251--62461295 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
62461241 GTTCCTACAT
*
62461251 AGAAAACTTGAAACAATAA
1 AGAAAACTTGAAACAACAA
*
62461270 AGAAAACTTGGAACAACAA
1 AGAAAACTTGAAACAACAA
62461289 AGAAAAC
1 AGAAAAC
62461296 GAATATATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.62, C:0.13, G:0.13, T:0.11
Consensus pattern (19 bp):
AGAAAACTTGAAACAACAA
Found at i:62470175 original size:22 final size:22
Alignment explanation
Indices: 62470143--62470192 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
62470133 ACAAGACTGA
* *
62470143 TGTCGCGACACCGTCGTGCTTT
1 TGTCGCAACACCGTCGTACTTT
62470165 TGTCGCAACACCGTCGTACTTT
1 TGTCGCAACACCGTCGTACTTT
62470187 TGTCGC
1 TGTCGC
62470193 GACATCGAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.12, C:0.32, G:0.24, T:0.32
Consensus pattern (22 bp):
TGTCGCAACACCGTCGTACTTT
Found at i:62477060 original size:2 final size:2
Alignment explanation
Indices: 62477053--62477086 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
62477043 CGGCTCTTGC
62477053 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
62477087 GTTTGCACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62477852 original size:40 final size:39
Alignment explanation
Indices: 62477795--62477974 Score: 190
Period size: 40 Copynumber: 4.5 Consensus size: 39
62477785 TCGAATGATG
* *
62477795 TCCGGGCTAAGTCCCGAAGGC-TCTGTGCTAAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCAT-TGTGC-GAGTTACTAAA
62477835 TCCGGACTAAGAT-CCGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGC-ATTGTGCGAGTTACTAAA
62477875 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAAA
*
62477915 TCCGGGA-TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCC-GGACTAAGTCCCGAAGGCA-TTGTGCGAGTTACTA-AA
* **
62477956 -CCGGGCTTTGTCCCGAAGG
1 TCCGGACTAAGTCCCGAAGG
62477975 TATTTGAACG
Statistics
Matches: 126, Mismatches: 6, Indels: 16
0.85 0.04 0.11
Matches are distributed among these distances:
39 4 0.03
40 110 0.87
41 11 0.09
42 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGACTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:62480872 original size:2 final size:2
Alignment explanation
Indices: 62480865--62480913 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
62480855 TTTGTAATTG
62480865 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
62480907 AT AT AT A
1 AT AT AT A
62480914 CTTGCATTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:62488913 original size:52 final size:53
Alignment explanation
Indices: 62488819--62488929 Score: 197
Period size: 52 Copynumber: 2.1 Consensus size: 53
62488809 CAATTAAGTG
**
62488819 ATTTAGATGATTATTTTTTATGGTTTTTGTACTTTTGGGACCTTTATAGCTTA
1 ATTTAGATGATTATTTTTTATGGTTTTTGTACTTTTAAGACCTTTATAGCTTA
62488872 ATTTAGATGATTATTTTTTATGG-TTTTGTACTTTTAAGACCTTTATAGCTTA
1 ATTTAGATGATTATTTTTTATGGTTTTTGTACTTTTAAGACCTTTATAGCTTA
62488924 ATTTAG
1 ATTTAG
62488930 CTAATGAGTG
Statistics
Matches: 56, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
52 33 0.59
53 23 0.41
ACGTcount: A:0.23, C:0.07, G:0.15, T:0.54
Consensus pattern (53 bp):
ATTTAGATGATTATTTTTTATGGTTTTTGTACTTTTAAGACCTTTATAGCTTA
Found at i:62490624 original size:17 final size:18
Alignment explanation
Indices: 62490582--62490630 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
62490572 AGTTGAAAAG
62490582 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
62490601 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
62490618 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
62490631 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:62491519 original size:40 final size:40
Alignment explanation
Indices: 62491453--62491619 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
62491443 AAATTGAATG
* * *
62491453 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
62491492 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
62491532 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
62491572 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
62491612 ATATCCGG
1 ATATCCGG
62491620 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:62497757 original size:40 final size:40
Alignment explanation
Indices: 62497684--62497891 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
62497674 CAATTGAATG
* * ** *
62497684 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * * **
62497724 ATACCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* **
62497764 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
62497804 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * **
62497844 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
62497884 ATATCCGG
1 ATATCCGG
62497892 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 4 0.03
40 131 0.94
41 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:62497822 original size:80 final size:80
Alignment explanation
Indices: 62497686--62497891 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
62497676 ATTGAATGAT
* * ** * * * *
62497686 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATACCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
62497750 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
62497766 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
62497831 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
62497846 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
62497892 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 102 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:62505773 original size:40 final size:40
Alignment explanation
Indices: 62505700--62505907 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
62505690 CAATTGAATG
* * ** *
62505700 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * * **
62505740 ATACCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* **
62505780 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
62505820 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * **
62505860 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
62505900 ATATCCGG
1 ATATCCGG
62505908 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 4 0.03
40 131 0.94
41 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:62505838 original size:80 final size:80
Alignment explanation
Indices: 62505702--62505907 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
62505692 ATTGAATGAT
* * ** * * * *
62505702 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATACCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
62505766 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
62505782 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
62505847 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
62505862 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
62505908 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 102 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:62507790 original size:44 final size:43
Alignment explanation
Indices: 62507654--62507809 Score: 154
Period size: 43 Copynumber: 3.6 Consensus size: 43
62507644 CAATGCTAAC
** * * * *
62507654 GTCCCAGATGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACGAAATCTAATATCGATGCCAAT
* * *
62507697 GTCCCAGACAGGGTCTTACACGAAATCTAATAT-GATACCGAT
1 GTCCCAGACATGGTCTTACACGAAATCTAATATCGATGCCAAT
* * *
62507739 GTCCCAGACATGGTCTTACCCATAAATTTCAA-ATCGATGCCAAT
1 GTCCCAGACATGGTCTTACAC-GAAATCT-AATATCGATGCCAAT
* *
62507783 GTCCCAGACGTGGTCTTACATGAAATC
1 GTCCCAGACATGGTCTTACACGAAATC
62507810 ACATATTGGA
Statistics
Matches: 90, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
42 25 0.28
43 38 0.42
44 27 0.30
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGAAATCTAATATCGATGCCAAT
Found at i:62512455 original size:26 final size:26
Alignment explanation
Indices: 62512426--62512484 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
62512416 ATAAAACCTA
* *
62512426 AAAATGAAATAGTA-TTAAAGGAAGAT
1 AAAATAAAAAAGTACTTAAA-GAAGAT
62512452 AAAATAAAAAAGTACTTAAAGAAGAT
1 AAAATAAAAAAGTACTTAAAGAAGAT
62512478 -AAATAAA
1 AAAATAAA
62512485 GATAAAAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 7 0.23
26 18 0.60
27 5 0.17
ACGTcount: A:0.64, C:0.02, G:0.14, T:0.20
Consensus pattern (26 bp):
AAAATAAAAAAGTACTTAAAGAAGAT
Found at i:62514156 original size:19 final size:20
Alignment explanation
Indices: 62514129--62514166 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
62514119 GTGGCGCCCA
*
62514129 AGGGTGAGA-AGAGGGGAGG
1 AGGGAGAGAGAGAGGGGAGG
62514148 AGGGAGAGAGAGAGGGGAG
1 AGGGAGAGAGAGAGGGGAG
62514167 AAAAATGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.34, C:0.00, G:0.63, T:0.03
Consensus pattern (20 bp):
AGGGAGAGAGAGAGGGGAGG
Found at i:62524518 original size:29 final size:29
Alignment explanation
Indices: 62524484--62524586 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
62524474 TAATCAGCCG
** *
62524484 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
62524513 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
62524542 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
62524571 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
62524587 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:62532588 original size:29 final size:29
Alignment explanation
Indices: 62532554--62532656 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
62532544 TAATCAGCCG
** *
62532554 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
62532583 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
62532612 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
62532641 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
62532657 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:62540631 original size:28 final size:27
Alignment explanation
Indices: 62540576--62540690 Score: 126
Period size: 27 Copynumber: 4.3 Consensus size: 27
62540566 AACATGGCTG
* *
62540576 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
62540602 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
* *
62540630 CCAGAACAGA-AATATGTGGTAAAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
62540657 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
62540684 CTAGAAC
1 CCAGAAC
62540691 GCTTCCTCCA
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.65
28 18 0.24
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:62541952 original size:22 final size:22
Alignment explanation
Indices: 62541925--62541967 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
62541915 ACAGAAGAAG
* *
62541925 AAAAGAATAATAAATGGAGAGA
1 AAAAGAAAAATAAAAGGAGAGA
62541947 AAAAGAAAAATAAAAGGAGAG
1 AAAAGAAAAATAAAAGGAGAG
62541968 GAAGAGTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.23, T:0.09
Consensus pattern (22 bp):
AAAAGAAAAATAAAAGGAGAGA
Found at i:62544114 original size:13 final size:13
Alignment explanation
Indices: 62544096--62544122 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
62544086 CCTTGGTATA
62544096 TATATATTCAATG
1 TATATATTCAATG
62544109 TATATATTCAATG
1 TATATATTCAATG
62544122 T
1 T
62544123 TAAATGTGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.48
Consensus pattern (13 bp):
TATATATTCAATG
Found at i:62549203 original size:27 final size:27
Alignment explanation
Indices: 62549173--62549251 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
62549163 AATCTCATAT
* *
62549173 CTATAGGGTAGAATTACTGAAATGCCC
1 CTATAGGATAGAATTACTGAAATACCC
*
62549200 CTATAGGATAGAATTACTAAAATACCC
1 CTATAGGATAGAATTACTGAAATACCC
* *
62549227 CTGTAGGATAGAATTATTGAAATAC
1 CTATAGGATAGAATTACTGAAATAC
62549252 GCTTAGTTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (27 bp):
CTATAGGATAGAATTACTGAAATACCC
Found at i:62549268 original size:27 final size:26
Alignment explanation
Indices: 62549238--62549296 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
62549228 TGTAGGATAG
* *
62549238 AATTATTGAAATACGCTTAGTTTACAA
1 AATTACTG-AATACCCTTAGTTTACAA
*
62549265 AATTACTGAATACCCTTGGTTTACAA
1 AATTACTGAATACCCTTAGTTTACAA
62549291 AATTAC
1 AATTAC
62549297 CAAAATACCC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 22 0.76
27 7 0.24
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (26 bp):
AATTACTGAATACCCTTAGTTTACAA
Found at i:62549421 original size:81 final size:81
Alignment explanation
Indices: 62549289--62549440 Score: 200
Period size: 81 Copynumber: 1.9 Consensus size: 81
62549279 CTTGGTTTAC
** * * **
62549289 AAAATTACCAAAATACCCATAGTTTGTAAAATTATCAAAATACCCCTGATTTGTGAAATTACTGA
1 AAAATTACCAAAATACCCATAACTTGTAAAATTATCAAAATACCCCTGATTTATAAAATTACCAA
62549354 AATACCCTCGACCTAT
66 AATACCCTCGACCTAT
* *
62549370 AAAATTACCGAAATACCC-TCAACTTGTAAAATTATCAAAATA-TCCTCGATTTATAAAATTACC
1 AAAATTACCAAAATACCCAT-AACTTGTAAAATTATCAAAATACCCCT-GATTTATAAAATTACC
62549433 AAAATACC
64 AAAATACC
62549441 TCTAATTTGG
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 4 0.07
81 57 0.93
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (81 bp):
AAAATTACCAAAATACCCATAACTTGTAAAATTATCAAAATACCCCTGATTTATAAAATTACCAA
AATACCCTCGACCTAT
Found at i:62549482 original size:54 final size:53
Alignment explanation
Indices: 62549238--62549579 Score: 217
Period size: 54 Copynumber: 6.3 Consensus size: 53
62549228 TGTAGGATAG
* * * * ** ** *
62549238 AATTATTGAAATACGCTTAGTTTACAAAATTACTGAATACC-CTTGGTTTACAA
1 AATTATCGAAATACCCTTAATTTATAAAATTACAAAATACCTC-TAATTTGCAA
* * * * * * * **
62549291 AATTACCAAAATACCCATAGTTTGTAAAATTATCAAAATACCCCTGATTTGTGA
1 AATTATCGAAATACCCTTAATTTATAAAATTA-CAAAATACCTCTAATTTGCAA
** ** * * *
62549345 AATTA-CTGAAATACCCTCGACCTATAAAATTACCGAAATACC-CTCAACTTGTAA
1 AATTATC-GAAATACCCTTAATTTATAAAATTA-CAAAATACCTCT-AATTTGCAA
* * ** *
62549399 AATTATCAAAATATCCTCGATTTATAAAATTACCAAAATACCTCTAATTTGGAA
1 AATTATCGAAATACCCTTAATTTATAAAATTA-CAAAATACCTCTAATTTGCAA
** *
62549453 AATTATCGAAATACCCTTAATTTGGAAAATTACAGAAATACCTCTAATTTACAA
1 AATTATCGAAATACCCTTAATTTATAAAATTACA-AAATACCTCTAATTTGCAA
* * **
62549507 AATTATAGAAATGCCCTTAACTTTCA-AAAATTACAGAAATACCAT-TGGTTTGCAA
1 AATTATCGAAATACCCTTAA-TTT-ATAAAATTACA-AAATACC-TCTAATTTGCAA
62549562 AATTATCGAAATACCCTT
1 AATTATCGAAATACCCTT
62549580 GGTTTGTAGA
Statistics
Matches: 230, Mismatches: 49, Indels: 18
0.77 0.16 0.06
Matches are distributed among these distances:
53 30 0.13
54 152 0.66
55 47 0.20
56 1 0.00
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (53 bp):
AATTATCGAAATACCCTTAATTTATAAAATTACAAAATACCTCTAATTTGCAA
Found at i:62549585 original size:27 final size:27
Alignment explanation
Indices: 62549238--62549579 Score: 169
Period size: 27 Copynumber: 12.7 Consensus size: 27
62549228 TGTAGGATAG
* * * *
62549238 AATTATTGAAATACGCTTAGTTTACAA
1 AATTATCGAAATACCCTTAATTTGCAA
** *
62549265 AATTA-CTG-AATACCCTTGGTTTACAA
1 AATTATC-GAAATACCCTTAATTTGCAA
* * * * *
62549291 AATTACCAAAATACCCATAGTTTGTAA
1 AATTATCGAAATACCCTTAATTTGCAA
* * * **
62549318 AATTATCAAAATACCCCTGATTTGTGA
1 AATTATCGAAATACCCTTAATTTGCAA
** ** **
62549345 AATTA-CTGAAATACCCTCGACCTATAA
1 AATTATC-GAAATACCCTTAATTTGCAA
* * * *
62549372 AATTACCGAAATACCCTCAACTTGTAA
1 AATTATCGAAATACCCTTAATTTGCAA
* * ** **
62549399 AATTATCAAAATATCCTCGATTTATAA
1 AATTATCGAAATACCCTTAATTTGCAA
* * *
62549426 AATTACCAAAATA-CCTCTAATTTGGAA
1 AATTATCGAAATACCCT-TAATTTGCAA
*
62549453 AATTATCGAAATACCCTTAATTTGGAA
1 AATTATCGAAATACCCTTAATTTGCAA
*
62549480 AATTA-CAGAAATA-CCTCTAATTTACAA
1 AATTATC-GAAATACCCT-TAATTTGCAA
* *
62549507 AATTATAGAAATGCCCTTAACTTT-CAAA
1 AATTATCGAAATACCCTTAA-TTTGC-AA
* **
62549535 AATTA-CAGAAATACCATTGGTTTGCAA
1 AATTATC-GAAATACCCTTAATTTGCAA
62549562 AATTATCGAAATACCCTT
1 AATTATCGAAATACCCTT
62549580 GGTTTGTAGA
Statistics
Matches: 253, Mismatches: 46, Indels: 32
0.76 0.14 0.10
Matches are distributed among these distances:
26 29 0.11
27 196 0.77
28 28 0.11
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTATCGAAATACCCTTAATTTGCAA
Found at i:62549890 original size:41 final size:41
Alignment explanation
Indices: 62549845--62549965 Score: 174
Period size: 41 Copynumber: 3.0 Consensus size: 41
62549835 GGAAGAAGAA
62549845 ATTGAGGATCGCATGGTTGCTTCACGACTGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTCACGACTGTGGATCCACCG
*
62549886 ATTGAGGATCGCATGGTTGC-TCGACGA-TCGTGGATCCACCT
1 ATTGAGGATCGCATGGTTGCTTC-ACGACT-GTGGATCCACCG
* * *
62549927 ATTAAGGATCGCATGGTTGCTTGATGACTGTGGATCCAC
1 ATTGAGGATCGCATGGTTGCTTCACGACTGTGGATCCAC
62549966 TGGTGGCTTT
Statistics
Matches: 72, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
40 3 0.04
41 67 0.93
42 2 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTCACGACTGTGGATCCACCG
Found at i:62550142 original size:22 final size:22
Alignment explanation
Indices: 62550109--62550162 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
62550099 GCCAATTATT
*
62550109 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGCGCCAAC
*
62550131 CT-ATATATGGCTCTGTGCCAAC
1 CTGAT-TATGGCTCTGCGCCAAC
62550153 CTGATTATGG
1 CTGATTATGG
62550163 TTGTGTGCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 2 0.07
22 24 0.86
23 2 0.07
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.33
Consensus pattern (22 bp):
CTGATTATGGCTCTGCGCCAAC
Found at i:62550169 original size:22 final size:21
Alignment explanation
Indices: 62550109--62550173 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
62550099 GCCAATTATT
*
62550109 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGG-TTTGTGCCAAC
*
62550131 CT-ATATATGGCTCTGTGCCAAC
1 CTGAT-TATGG-TTTGTGCCAAC
62550153 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGTT-TGTGCCAA
62550174 ATGTATTTGC
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 3 0.08
22 32 0.86
23 2 0.05
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (21 bp):
CTGATTATGGTTTGTGCCAAC
Found at i:62553060 original size:40 final size:40
Alignment explanation
Indices: 62553016--62553095 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
62553006 TTTTCCAAAA
*
62553016 CAATAACTGTTTTTCAAAATATCACATTTTCGCAAAAATT
1 CAATAACTGTTTTTCAAAATATCACATTTCCGCAAAAATT
*
62553056 CAATAACTGTTTTTCAAAATATCACGTTTCCGCAAAAATT
1 CAATAACTGTTTTTCAAAATATCACATTTCCGCAAAAATT
62553096 TAAACTAAGC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.39, C:0.19, G:0.06, T:0.36
Consensus pattern (40 bp):
CAATAACTGTTTTTCAAAATATCACATTTCCGCAAAAATT
Found at i:62564277 original size:40 final size:39
Alignment explanation
Indices: 62564109--62564279 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
62564099 AGAAATTGAA
* *
62564109 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
62564149 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
62564189 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
62564229 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
62564269 TGATATCCGGG
1 TGATATCCGGG
62564280 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:62572317 original size:40 final size:39
Alignment explanation
Indices: 62572149--62572319 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
62572139 AGAAGTTGAA
* *
62572149 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
62572189 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
62572229 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
62572269 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
62572309 TGATATCCGGG
1 TGATATCCGGG
62572320 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:62573880 original size:27 final size:27
Alignment explanation
Indices: 62573841--62573901 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
62573831 TTTACCTAGA
*
62573841 GCCCCTAATTGATAAAATGACTGTTAT
1 GCCCCTAAGTGATAAAATGACTGTTAT
*
62573868 GCCCCTAGGTGATAAAATGACTGTTAT
1 GCCCCTAAGTGATAAAATGACTGTTAT
*
62573895 ACCCCTA
1 GCCCCTA
62573902 TGTAATGTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (27 bp):
GCCCCTAAGTGATAAAATGACTGTTAT
Found at i:62574613 original size:23 final size:23
Alignment explanation
Indices: 62574564--62574613 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
62574554 TACTAGCAGT
* *
62574564 AGGAAAAGACCTGGGTTTTTAAT
1 AGGAAAAGACCTGGGTTTTCAAA
*
62574587 AGGAAAAGACGTGGGTTTTCAAA
1 AGGAAAAGACCTGGGTTTTCAAA
62574610 AGGA
1 AGGA
62574614 TAAATGCTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.30, T:0.24
Consensus pattern (23 bp):
AGGAAAAGACCTGGGTTTTCAAA
Found at i:62583463 original size:27 final size:27
Alignment explanation
Indices: 62583431--62583488 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
62583421 ATCTCCTAAT
62583431 TGATAAAATGACTATTATGCCCCTATG
1 TGATAAAATGACTATTATGCCCCTATG
* * *
62583458 TGATAAAGTGACTGTTTTGCCCCTATG
1 TGATAAAATGACTATTATGCCCCTATG
62583485 TGAT
1 TGAT
62583489 GTATGATTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (27 bp):
TGATAAAATGACTATTATGCCCCTATG
Found at i:62583572 original size:22 final size:22
Alignment explanation
Indices: 62583529--62583573 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
62583519 CGTATTGAGT
* *
62583529 ACATGTATGATATTATGACATG
1 ACATGTATGACATGATGACATG
62583551 ACATGTCATGACATGATG-CATG
1 ACATGT-ATGACATGATGACATG
62583573 A
1 A
62583574 TTGTTTGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (22 bp):
ACATGTATGACATGATGACATG
Found at i:62587774 original size:26 final size:26
Alignment explanation
Indices: 62587741--62587794 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
62587731 CTCTTACTTC
62587741 TAAGTCCATCAATGATTTGTTTAACT
1 TAAGTCCATCAATGATTTGTTTAACT
62587767 TAAGTCCATCAATGATTTGTTTAACT
1 TAAGTCCATCAATGATTTGTTTAACT
62587793 TA
1 TA
62587795 CCTGATGTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.43
Consensus pattern (26 bp):
TAAGTCCATCAATGATTTGTTTAACT
Found at i:62589513 original size:21 final size:21
Alignment explanation
Indices: 62589489--62589532 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
62589479 TTGCAATGAA
62589489 CCTACATTATAAGCCACATTG
1 CCTACATTATAAGCCACATTG
62589510 CCTACATTATAAGCCACATTG
1 CCTACATTATAAGCCACATTG
62589531 CC
1 CC
62589533 ATATTTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.32, C:0.32, G:0.09, T:0.27
Consensus pattern (21 bp):
CCTACATTATAAGCCACATTG
Found at i:62592474 original size:29 final size:30
Alignment explanation
Indices: 62592431--62592487 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
62592421 AAATAGACTC
* *
62592431 ATTTATATTTAATTT-CATAATTTATTTGAA
1 ATTTATATTCAATTTACACAATTT-TTTGAA
62592461 ATTTA-ATTCAATTTACACAATTTTTTG
1 ATTTATATTCAATTTACACAATTTTTTG
62592488 TGAATTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 12 0.50
30 12 0.50
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54
Consensus pattern (30 bp):
ATTTATATTCAATTTACACAATTTTTTGAA
Found at i:62592827 original size:49 final size:49
Alignment explanation
Indices: 62592761--62593005 Score: 274
Period size: 49 Copynumber: 4.9 Consensus size: 49
62592751 TAGGCAAAAC
* * *
62592761 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* * * * *
62592810 TATCCGGTACACGTAGTAGCCAGCACTTAGTACTACACACGTGACTTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGAC-CAAT
* * * * ** * *
62592860 CATCTGATACACATAGTAGACTGCACTTAGTACTACACACATTATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-T
* * *
62592911 TATCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGTGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* *
62592960 TATCCGGTACACGTAGTAGCCTGCACTTAATACTACACATGTGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC
62593006 TCACAATAGA
Statistics
Matches: 160, Mismatches: 33, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
49 81 0.51
50 43 0.27
51 36 0.22
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
Found at i:62592941 original size:101 final size:98
Alignment explanation
Indices: 62592762--62592998 Score: 269
Period size: 101 Copynumber: 2.4 Consensus size: 98
62592752 AGGCAAAACT
* ** *
62592762 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCCGGTACACATAGT
*
62592827 AGCCAGCACTTAGTACTACACACGTGACTTAACC
66 AGCCAGCACTTAGTACTACACACGTGAC-CAACC
* * ** * * *
62592861 ATCTGATACACATAGTAGACTGCACTTAGTACTACACACATTATCGAAGTTATCGGGTACGCATA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACACGA-CCAA-TTATCCGGTACACATA
* **
62592926 GTAGCCTA-CACTTAGTACTACACATGTGACCAATT
64 GTAGCC-AGCACTTAGTACTACACACGTGACCAACC
* * *
62592961 ATCCGGTACACGTAGTAGCCTGCACTTAATACTACACA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
62592999 TGTGACCTCA
Statistics
Matches: 115, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
99 36 0.31
100 38 0.33
101 40 0.35
102 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (98 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCCGGTACACATAGT
AGCCAGCACTTAGTACTACACACGTGACCAACC
Found at i:62613775 original size:39 final size:40
Alignment explanation
Indices: 62613675--62613865 Score: 169
Period size: 40 Copynumber: 4.8 Consensus size: 40
62613665 TCGAATGATG
* * * * *
62613675 TCCGGGATAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAT
*
62613714 ATCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAT
* * * * *
62613755 TTCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* *
62613794 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* *
62613833 AACCGGGCT-AGTCCCGAAGGCATTTGAACGAGT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
62613866 AGCTATATCC
Statistics
Matches: 124, Mismatches: 21, Indels: 13
0.78 0.13 0.08
Matches are distributed among these distances:
39 55 0.44
40 60 0.48
41 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
Found at i:62619045 original size:68 final size:68
Alignment explanation
Indices: 62618964--62619119 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
62618954 CATCATGTGT
* * * * * *
62618964 ACAAGA-AGGCTACGAGATACTATATAGTAGCTAGGTCACATGTGTGA-T-ACGGGATGTATC-C
1 ACAAGAGA-GCTACGAGAGA-TAAAT-GTAGCTAGGTCACATGCGTGATTCAAGGGAAGGA-CAC
62619025 CATGTAG
62 CATGTAG
* *
62619032 ACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ACAAGAGAGCTAC--GAGAGATAAATGTAGCTAGGTCACATGCGTGATT-CAAGGGAAGGACACC
62619097 ATGTAG
63 ATGTAG
62619103 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
62619120 CAAATCGGCT
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
68 30 0.41
69 10 0.14
70 6 0.08
71 27 0.37
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.21
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGAGATAAATGTAGCTAGGTCACATGCGTGATTCAAGGGAAGGACACCATG
TAG
Found at i:62629539 original size:29 final size:29
Alignment explanation
Indices: 62629505--62629636 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
62629495 TACTCGATTT
** * *
62629505 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
62629534 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
62629563 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
62629592 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
62629621 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
62629637 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:62632068 original size:40 final size:39
Alignment explanation
Indices: 62631950--62632072 Score: 133
Period size: 40 Copynumber: 3.1 Consensus size: 39
62631940 TTCGAATGAT
*
62631950 ATCCGGGCTAAG-TCCCGAAGGCTTT-GTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCTTTCGTGC-AAGT-ACTAA
* * * *
62631990 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCTTTCGTGCAAG-TACTAA
*
62632030 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCTTTCGTGCAAG-TACTAA
62632070 ATC
1 ATC
62632073 TGGGTTGAGT
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
40 63 0.91
41 6 0.09
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.22
Consensus pattern (39 bp):
ATCCGGACTAAGATCCGAAGGCTTTCGTGCAAGTACTAA
Found at i:62632128 original size:80 final size:80
Alignment explanation
Indices: 62631950--62632137 Score: 197
Period size: 80 Copynumber: 2.3 Consensus size: 80
62631940 TTCGAATGAT
* *
62631950 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
62632015 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* * ** *
62632030 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCTGGGTTGAG-TCCTGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGATCC-GAAGG
* *
62632091 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
62632111 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
62632138 ATGTGTAGCC
Statistics
Matches: 90, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
79 4 0.04
80 76 0.84
81 10 0.11
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:62638389 original size:40 final size:39
Alignment explanation
Indices: 62638302--62638483 Score: 212
Period size: 40 Copynumber: 4.7 Consensus size: 39
62638292 TCGAATGATG
* *
62638302 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGA-T-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
62638339 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
62638378 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
62638418 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * *
62638458 ACCGGTCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62638484 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
37 22 0.18
38 9 0.07
39 35 0.28
40 59 0.47
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:62638497 original size:40 final size:40
Alignment explanation
Indices: 62638352--62638503 Score: 125
Period size: 40 Copynumber: 3.8 Consensus size: 40
62638342 GGACTAAGAT
** * * *
62638352 CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-C
1 CCGAAGGCATTTGAACGAGTTACTATA-ACCGGTCTATGTC
* ** *
62638391 CCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGT-TAAGTC
1 CCGAAGGCATTTGAACGAGTTACTATAA-CC-GGTCTATGTC
**
62638431 CCGAAGGCATTTGTGCGAGTTACTATAACCGGTCTATGTC
1 CCGAAGGCATTTGAACGAGTTACTATAACCGGTCTATGTC
*
62638471 CCGAAGGCATTTGAACGAG-TAGCTATATCCGGT
1 CCGAAGGCATTTGAACGAGTTA-CTATAACCGGT
62638504 TAAATTCCGA
Statistics
Matches: 99, Mismatches: 8, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
39 36 0.36
40 61 0.62
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGTTACTATAACCGGTCTATGTC
Found at i:62638505 original size:79 final size:79
Alignment explanation
Indices: 62638352--62638516 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
62638342 GGACTAAGAT
* **
62638352 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
62638417 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
62638431 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGTCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
62638494 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
62638510 CCGAAGG
1 CCGAAGG
62638517 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:62642055 original size:14 final size:14
Alignment explanation
Indices: 62642033--62642062 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
62642023 ACTAGTATGA
62642033 ATGAATATATATAT
1 ATGAATATATATAT
*
62642047 ATGATTATATATAT
1 ATGAATATATATAT
62642061 AT
1 AT
62642063 TTATATCCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (14 bp):
ATGAATATATATAT
Found at i:62648784 original size:34 final size:34
Alignment explanation
Indices: 62648746--62648818 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
62648736 GCCCCTTTTC
62648746 CAGTAGCAAAAACAGTCTGGACCTGAGCCCATTT
1 CAGTAGCAAAAACAGTCTGGACCTGAGCCCATTT
* **** * *
62648780 CAGTATCAGTGGCAGTCTGGGCCTTAGCCCATTT
1 CAGTAGCAAAAACAGTCTGGACCTGAGCCCATTT
62648814 CAGTA
1 CAGTA
62648819 CAGTATGCAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (34 bp):
CAGTAGCAAAAACAGTCTGGACCTGAGCCCATTT
Found at i:62651188 original size:2 final size:2
Alignment explanation
Indices: 62651181--62651205 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
62651171 GAGACTAGTC
62651181 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
62651206 CATGTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:62653239 original size:30 final size:30
Alignment explanation
Indices: 62653205--62653265 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
62653195 TCCTTAACTC
62653205 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
62653235 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
62653265 A
1 A
62653266 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:62656281 original size:40 final size:39
Alignment explanation
Indices: 62656236--62656399 Score: 174
Period size: 40 Copynumber: 4.2 Consensus size: 39
62656226 CGGAATATAA
62656236 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAT-AC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
62656276 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAAT-ACTAGCACAAATGCCTTCGGGTCTTAGC
* *
62656316 CCGGATAT-A-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
62656353 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAA-TACTAGCACAAATGCCTTCGGGTCTTAGC
62656392 CCGGATAT
1 CCGGATAT
62656400 CATTCAATTT
Statistics
Matches: 107, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
37 32 0.30
38 1 0.01
39 15 0.14
40 59 0.55
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAATACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:62656383 original size:77 final size:76
Alignment explanation
Indices: 62656252--62656399 Score: 192
Period size: 77 Copynumber: 1.9 Consensus size: 76
62656242 ATAATCACGT
*
62656252 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
62656317 CGGATATAACTA
65 CGGATATAACTA
* * ** * *
62656329 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
62656392 CCGGATAT
64 CCGGATAT
62656400 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
76 17 0.27
77 45 0.73
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.27
Consensus pattern (76 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAACTA
Found at i:62657245 original size:17 final size:19
Alignment explanation
Indices: 62657222--62657267 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
62657212 AAGAAGCATG
62657222 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
62657240 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
62657258 AATCATGCTC
1 AATCATGCTC
62657268 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:62664241 original size:40 final size:40
Alignment explanation
Indices: 62664196--62664361 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
62664186 CGGAATATAA
62664196 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
62664236 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
62664276 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
62664315 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
62664354 CCGGATAT
1 CCGGATAT
62664362 CATTCAATTT
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 47 0.44
40 60 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Done.