Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 203 of 325
Found at i:63053846 original size:110 final size:106
Alignment explanation
Indices: 63053646--63053897 Score: 292
Period size: 110 Copynumber: 2.3 Consensus size: 106
63053636 AACTTACCAT
*
63053646 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
* *
63053711 GCATGGTCTTACATGGGACATTTGCCTTATAGTAACTCATCAA
66 ACATGATCTTACAT-GGACATTTGCCTTATAG-AACTCATCAA
* * * * *
63053754 TTCCATGTCTTGACATGGTCTTACATGG-GTCCTTTGCGTTATAGTAACTCATCAATGCCATGTC
1 TGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-G-AACTCACCAATGCCATGCC
** *
63053818 TTGACATGATCTTACAT-GATTTCGTTGCCTTATAGAACTTATCAA
63 TTGACATGATCTTACATGGACAT--TTGCCTTATAGAACTCATCAA
** * *
63053863 TGCCATACCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTT
63053898 ATCTTACCAA
Statistics
Matches: 121, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
107 3 0.02
108 37 0.31
109 35 0.29
110 46 0.38
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (106 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
ACATGATCTTACATGGACATTTGCCTTATAGAACTCATCAA
Found at i:63053929 original size:47 final size:47
Alignment explanation
Indices: 63053876--63054009 Score: 214
Period size: 47 Copynumber: 2.8 Consensus size: 47
63053866 CATACCTTGG
* * * *
63053876 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGGTCCAAA
63053923 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGGTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGGTCCAAA
63053970 CATGGTCTTACATGGTATCCTTGTCTTACCACCAATGCCA
1 CATGGTCTTACATGGTATCCTTGTCTTACCA--AATGCCA
63054010 CATCTTGATG
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 74 0.91
49 7 0.09
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGGTCCAAA
Found at i:63054086 original size:47 final size:45
Alignment explanation
Indices: 63054020--63054121 Score: 107
Period size: 45 Copynumber: 2.2 Consensus size: 45
63054010 CATCTTGATG
* * * *
63054020 TGGTCTTACATGGAGTCCTTAATCAATGCCGATGCCATGTCTTAACA
1 TGGTCTTACACGGAGTCCTT--GCAATACCAATGCCATGTCTTAACA
** *
63054067 TGGTCTTACAC-GAGATCCTTGCCGTACCAATGCCATGTCTTGACA
1 TGGTCTTACACGGAG-TCCTTGCAATACCAATGCCATGTCTTAACA
63054112 TGGTCTTACA
1 TGGTCTTACA
63054122 TTGTATCCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
45 29 0.62
46 3 0.06
47 15 0.32
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (45 bp):
TGGTCTTACACGGAGTCCTTGCAATACCAATGCCATGTCTTAACA
Found at i:63061890 original size:31 final size:31
Alignment explanation
Indices: 63061852--63061915 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
63061842 ATGGTAAAGG
63061852 AGTACGAACGAGGAAAGTCCCGTTGAACTTT
1 AGTACGAACGAGGAAAGTCCCGTTGAACTTT
63061883 AGTACGAACGAGGAAAGTCCCGTTGAACTTT
1 AGTACGAACGAGGAAAGTCCCGTTGAACTTT
63061914 AG
1 AG
63061916 GAATAGATTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.22
Consensus pattern (31 bp):
AGTACGAACGAGGAAAGTCCCGTTGAACTTT
Found at i:63062001 original size:46 final size:46
Alignment explanation
Indices: 63061939--63062205 Score: 249
Period size: 46 Copynumber: 5.8 Consensus size: 46
63061929 TATTTAGGCA
*
63061939 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * * * *
63061985 TCCAAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAATTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
*
63062032 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * * *
63062078 TCCGAACTCGTTAAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
* ** *
63062125 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * * *
63062171 CCCGAGCTCGTTGAATTGAGTCCGAGTTCGCTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
63062206 TGGCGGGTTA
Statistics
Matches: 179, Mismatches: 28, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
43 12 0.07
45 6 0.03
46 88 0.49
47 56 0.31
48 6 0.03
50 11 0.06
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:63062039 original size:93 final size:93
Alignment explanation
Indices: 63061932--63062200 Score: 439
Period size: 93 Copynumber: 2.9 Consensus size: 93
63061922 ATTCGGATAT
* * *
63061932 TTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCCAAACTTGTT
1 TTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTT
63061997 GAGTTGAGTCCGAGTTCGTGAGATGTAA
66 GAGTTGAGTCCGAGTTCGTGAGATGTAA
*
63062025 TTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTT
1 TTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTT
*
63062090 AAGTTGAGTCCGAGTTCGTGAGATGTAA
66 GAGTTGAGTCCGAGTTCGTGAGATGTAA
* * * * *
63062118 CTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTT
1 TTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTT
*
63062183 GAATTGAGTCCGAGTTCG
66 GAGTTGAGTCCGAGTTCG
63062201 CTTATTGGCG
Statistics
Matches: 163, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 163 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
TTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTT
GAGTTGAGTCCGAGTTCGTGAGATGTAA
Found at i:63074063 original size:2 final size:2
Alignment explanation
Indices: 63074056--63074084 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
63074046 ACAAAATAAG
63074056 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
63074085 CTTAACAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:63088084 original size:11 final size:11
Alignment explanation
Indices: 63088069--63088098 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
63088059 TTTATTCTTC
63088069 ATTTAATTTTG
1 ATTTAATTTTG
*
63088080 TTTTAATTTTG
1 ATTTAATTTTG
63088091 ATTTAATT
1 ATTTAATT
63088099 ACAAATTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (11 bp):
ATTTAATTTTG
Found at i:63091442 original size:27 final size:27
Alignment explanation
Indices: 63091404--63091473 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
63091394 ACAAATGTAC
63091404 GAAAGATTGAAACCTTTTGAAAGAAAA
1 GAAAGATTGAAACCTTTTGAAAGAAAA
*
63091431 GAAAGATTGAAACCTTTTGAAGGAAAA
1 GAAAGATTGAAACCTTTTGAAAGAAAA
*
63091458 GAAAAATTGAAACCTT
1 GAAAGATTGAAACCTT
63091474 GAATTTATTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.50, C:0.09, G:0.19, T:0.23
Consensus pattern (27 bp):
GAAAGATTGAAACCTTTTGAAAGAAAA
Found at i:63094165 original size:209 final size:209
Alignment explanation
Indices: 63093879--63094292 Score: 650
Period size: 209 Copynumber: 2.0 Consensus size: 209
63093869 TCCAACTAGA
* * * *
63093879 TATTATTGAATTTACTAATACATACTTCATCCGGATAAGTATGTATTATTAAAATTAAATTAAAA
1 TATTACTGAATCTACTAATACATACTTCATACGGATAAGTATGCATTATTAAAATTAAATTAAAA
* * *
63093944 TATTAAATAAGAAATAAAATTATAAAACAATATGTTATTTGAAAAATAATAATTATTGTAATGAG
66 TATTAAATAAGAAATAAAATTATAAAACAATATATTAGTTGAAAAATAACAATTATTGTAATGAG
* * * * * *
63094009 ATATATGTTTTATTAGGTATAAGTATTTAAAATTTTATTTTTGTAATGTGATATATGCGTAAATA
131 ATACATGATTTATTAAGTATAAGTATTTAAAATTTTATTTTTGTAATGTAATACATGCATAAATA
63094074 TATATATATAATCG
196 TATATATATAATCG
*
63094088 TATTACTGAATCTGCTAATACATACTTCATACGGATAAAGTATGCATTATTAAAATTAAATTAAA
1 TATTACTGAATCTACTAATACATACTTCATACGGAT-AAGTATGCATTATTAAAATTAAATTAAA
* * *
63094153 A-ATTAAATAAGAAATAAAATTATAATATAATATATTAGTTGGAAAATAACAATTATTGTAATGA
65 ATATTAAATAAGAAATAAAATTATAAAACAATATATTAGTTGAAAAATAACAATTATTGTAATGA
*
63094217 GATACATGATTTATTAAGTATAAGTATTTAAAATTTTGTTTTTGTAATGTAATACATGCATAAAT
130 GATACATGATTTATTAAGTATAAGTATTTAAAATTTTATTTTTGTAATGTAATACATGCATAAAT
63094282 ATATATATATA
195 ATATATATATA
63094293 TATATATATA
Statistics
Matches: 186, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
209 158 0.85
210 28 0.15
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (209 bp):
TATTACTGAATCTACTAATACATACTTCATACGGATAAGTATGCATTATTAAAATTAAATTAAAA
TATTAAATAAGAAATAAAATTATAAAACAATATATTAGTTGAAAAATAACAATTATTGTAATGAG
ATACATGATTTATTAAGTATAAGTATTTAAAATTTTATTTTTGTAATGTAATACATGCATAAATA
TATATATATAATCG
Found at i:63094287 original size:2 final size:2
Alignment explanation
Indices: 63094280--63094322 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
63094270 ACATGCATAA
63094280 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63094322 A
1 A
63094323 ATCATATTAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:63094801 original size:61 final size:61
Alignment explanation
Indices: 63094706--63094826 Score: 206
Period size: 61 Copynumber: 2.0 Consensus size: 61
63094696 AATGGACTTG
* * *
63094706 GATTAAGGTTTGTTTTATTTGTTGATGAGTATTGAGTCATTTTATTGTCAATTGGGGTTTA
1 GATTAAGGTGTGTTTTATTTGTTGATGAGTATTGAGTCATCTTATTGTCAATTGGAGTTTA
*
63094767 GATTAAGGTGTGTTTTATTTGTTGATGAGTATTGAGTCATCTTATTGTCGATTGGAGTTT
1 GATTAAGGTGTGTTTTATTTGTTGATGAGTATTGAGTCATCTTATTGTCAATTGGAGTTT
63094827 GATAGGTTGA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.21, C:0.04, G:0.26, T:0.50
Consensus pattern (61 bp):
GATTAAGGTGTGTTTTATTTGTTGATGAGTATTGAGTCATCTTATTGTCAATTGGAGTTTA
Found at i:63094939 original size:28 final size:30
Alignment explanation
Indices: 63094889--63094945 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 30
63094879 TTTGGTGATT
*
63094889 TAAAATTTTATTTTGAAGAGTTTAATAATA
1 TAAAATTTTATTTTAAAGAGTTTAATAATA
*
63094919 TAAAA-TTT-TTTTAAATAGTTTAATAAT
1 TAAAATTTTATTTTAAAGAGTTTAATAAT
63094946 TATTTTGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 17 0.68
29 3 0.12
30 5 0.20
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (30 bp):
TAAAATTTTATTTTAAAGAGTTTAATAATA
Found at i:63095377 original size:34 final size:35
Alignment explanation
Indices: 63095318--63095391 Score: 125
Period size: 34 Copynumber: 2.1 Consensus size: 35
63095308 ATCCTACTTG
63095318 AATATGTCAAATTTAGGAAAAATAAG-TCAATGCAA
1 AATATGTCAAATTTAGGAAAAATAAGAT-AATGCAA
63095353 AATATGTCAAATTTA-GAAAAATAAGATAATGCAA
1 AATATGTCAAATTTAGGAAAAATAAGATAATGCAA
63095387 AATAT
1 AATAT
63095392 ATGATGCATA
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
34 22 0.58
35 16 0.42
ACGTcount: A:0.54, C:0.07, G:0.12, T:0.27
Consensus pattern (35 bp):
AATATGTCAAATTTAGGAAAAATAAGATAATGCAA
Found at i:63095939 original size:16 final size:15
Alignment explanation
Indices: 63095911--63095951 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
63095901 AATCTTCAAG
*
63095911 AATTTTTGA-AAAAT
1 AATTTTTTATAAAAT
63095925 AATTATTTTATAAAAT
1 AATT-TTTTATAAAAT
63095941 AATTTTTTATA
1 AATTTTTTATA
63095952 TAAAAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 11 0.46
16 9 0.38
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (15 bp):
AATTTTTTATAAAAT
Found at i:63095939 original size:17 final size:18
Alignment explanation
Indices: 63095919--63095960 Score: 61
Period size: 16 Copynumber: 2.4 Consensus size: 18
63095909 AGAATTTTTG
63095919 AAAAATAATTATTT-TAT
1 AAAAATAATTATTTATAT
*
63095936 -AAAATAATTTTTTATAT
1 AAAAATAATTATTTATAT
63095953 AAAAATAA
1 AAAAATAA
63095961 ATGGACCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 12 0.55
17 3 0.14
18 7 0.32
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AAAAATAATTATTTATAT
Found at i:63096279 original size:14 final size:15
Alignment explanation
Indices: 63096242--63096299 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
63096232 TGTTTGATAA
63096242 ATTGAAAAATTAAAT
1 ATTGAAAAATTAAAT
*
63096257 ACTGAAAAATTAAAT
1 ATTGAAAAATTAAAT
* *
63096272 GTTGAAAAAATAAAT
1 ATTGAAAAATTAAAT
63096287 ATTGAAAAATTAA
1 ATTGAAAAATTAA
63096300 GTACTAAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.29
Consensus pattern (15 bp):
ATTGAAAAATTAAAT
Found at i:63102352 original size:42 final size:42
Alignment explanation
Indices: 63102295--63102458 Score: 143
Period size: 42 Copynumber: 3.9 Consensus size: 42
63102285 TAGGGTTATG
* * *
63102295 TGTGATTTTGTGTAAGACCGTATTTGGGATATGGCATCGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
* * *
63102337 TGTGATTTCGTGTAAGACCATGTCTGCGACATGGCATCGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
* * * *
63102379 CAG-GATATCGTGT-AGACCATAACTGGGCTATCGGCATCGATA
1 -TGTGATTTCGTGTAAGACCATATCTGGGATAT-GGCATCGATA
* ** * * *
63102421 TATTGATCCCATGTAAAACCATATATGGGATATGGCAT
1 T-GTGATTTCGTGTAAGACCATATCTGGGATATGGCAT
63102459 TGGCATCTTA
Statistics
Matches: 95, Mismatches: 22, Indels: 9
0.75 0.17 0.07
Matches are distributed among these distances:
41 13 0.14
42 55 0.58
43 13 0.14
44 14 0.15
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:63103600 original size:37 final size:37
Alignment explanation
Indices: 63103537--63103608 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
63103527 AGCTCAGATG
* *
63103537 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCAGGTCTTACCCGGACA
*
63103574 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCAGGTCTTACCCGGA
63103609 ATATATTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCAGGTCTTACCCGGACA
Found at i:63103810 original size:48 final size:48
Alignment explanation
Indices: 63103755--63104241 Score: 848
Period size: 48 Copynumber: 10.1 Consensus size: 48
63103745 ACACATCGCC
*
63103755 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
63103803 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
63103853 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
63103901 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
63103949 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
63103997 TACATATTTCACATTAGCCATTTGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
63104045 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
63104093 TACATATTTCACATTAGTCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
63104141 TACATATTTCACATTAGCCAGTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
63104189 TACATATTTCACATTAGCCATTCGGCTTTACCACATACACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
63104237 TACAT
1 TACAT
63104242 CAATTTCCGC
Statistics
Matches: 422, Mismatches: 15, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
48 376 0.89
50 46 0.11
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:63107632 original size:28 final size:27
Alignment explanation
Indices: 63107601--63107693 Score: 89
Period size: 28 Copynumber: 3.3 Consensus size: 27
63107591 CTGACTGATT
*
63107601 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTC-ATTAAAGAAC
* *
63107629 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTC-ATTA-AAGAAC
* *
63107658 TCACACACATAGTGCTCAGTTGAAGAAC
1 TCGCACACATAGTGCTCA-TTAAAGAAC
63107686 TCGCACAC
1 TCGCACAC
63107694 TCAGTGCCTC
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
27 2 0.04
28 27 0.52
29 22 0.42
30 1 0.02
ACGTcount: A:0.33, C:0.31, G:0.15, T:0.20
Consensus pattern (27 bp):
TCGCACACATAGTGCTCATTAAAGAAC
Found at i:63107724 original size:25 final size:25
Alignment explanation
Indices: 63107688--63107738 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
63107678 TGAAGAACTC
*
63107688 GCACACTCAGTGCCTCTAATCATTT
1 GCACACTCAGTGCCCCTAATCATTT
*
63107713 GCACACAT-AGTGCCCCTATTCATTT
1 GCACAC-TCAGTGCCCCTAATCATTT
63107738 G
1 G
63107739 TTGTTACACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.24, C:0.31, G:0.14, T:0.31
Consensus pattern (25 bp):
GCACACTCAGTGCCCCTAATCATTT
Found at i:63107958 original size:40 final size:40
Alignment explanation
Indices: 63107914--63108300 Score: 497
Period size: 40 Copynumber: 9.7 Consensus size: 40
63107904 CCAGAATGAT
* * *
63107914 TGCTCTTTGGGACCTAGCCCGGTTATAACAGC-AGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACA-CTAGCACGAA
* * * * * *
63107954 TGCTCTTCAGGACTTAACCCTGATATAGCTCTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* * * *
63107994 TGCTCTTTGAGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* *
63108034 TGCTCTTCGGGACTTAGCCCGGATACACCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* * *
63108074 TGCTCTTCGGGACTTAGCCCGCATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* *
63108114 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* * * *
63108154 TGCTCTTCGAGACTTAGCCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* *
63108194 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* *
63108234 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
*
63108274 TGCTCTTCGGGACTTAGCCTGGATATA
1 TGCTCTTCGGGACTTAGCCCGGATATA
63108301 TATAACTCTC
Statistics
Matches: 304, Mismatches: 42, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
39 1 0.00
40 303 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
Found at i:63108021 original size:80 final size:80
Alignment explanation
Indices: 63107914--63108298 Score: 563
Period size: 80 Copynumber: 4.8 Consensus size: 80
63107904 CCAGAATGAT
* * * * * * * *
63107914 TGCTCTTTGGGACCTAGCCCGGTTATAACAGCAGCACGAATGCTCTTCAGGACTTAACCCTGATA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATA
* * * *
63107979 TAGCTCTAGCACAAA
66 CATCACTAGCACGAA
* *
63107994 TGCTCTTTGAGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATA
*
63108059 CACCACTAGCACGAA
66 CATCACTAGCACGAA
*
63108074 TGCTCTTCGGGACTTAGCCCGCATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATA
63108139 CATCACTAGCACGAA
66 CATCACTAGCACGAA
* * * * * *
63108154 TGCTCTTCGAGACTTAGCCCAGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATA
63108219 CATCACTAGCACGAA
66 CATCACTAGCACGAA
*
63108234 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCTGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATA
63108299 TATATAACTC
Statistics
Matches: 275, Mismatches: 30, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 275 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (80 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATA
CATCACTAGCACGAA
Found at i:63109835 original size:48 final size:48
Alignment explanation
Indices: 63109780--63110264 Score: 857
Period size: 48 Copynumber: 10.1 Consensus size: 48
63109770 ACACATCGCC
*
63109780 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
63109828 TACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
63109878 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
63109926 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
63109974 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
63110022 TACATATTTCACATTAGCCATT-GGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
63110069 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
63110117 TACATATTTCACATTAGCCATTCGGCTTTACC-CATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
63110164 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
63110212 TACATATTTCACATTAGCCATTTGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
63110260 TACAT
1 TACAT
63110265 CAATTTCCGC
Statistics
Matches: 421, Mismatches: 12, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 93 0.22
48 283 0.67
50 45 0.11
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:63110096 original size:95 final size:96
Alignment explanation
Indices: 63109780--63110264 Score: 866
Period size: 95 Copynumber: 5.1 Consensus size: 96
63109770 ACACATCGCC
* *
63109780 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
63109845 CCATTCGGCTTTACCACATATACATATCTCATA
66 CCATTCGGCTTTACCACATATACTTATCTC--A
* *
63109878 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
63109943 CCATTCGGCTTTACCACATATACATATCTCA
66 CCATTCGGCTTTACCACATATACTTATCTCA
*
63109974 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
63110039 CCATT-GGCTTTACCACATATACTTATCTCA
66 CCATTCGGCTTTACCACATATACTTATCTCA
63110069 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
63110134 CCATTCGGCTTTACC-CATATACTTATCTCA
66 CCATTCGGCTTTACCACATATACTTATCTCA
63110164 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
63110229 CCATTTGGCTTTACCACATATACTTATCTCA
66 CCATTCGGCTTTACCACATATACTTATCTCA
63110260 TACAT
1 TACAT
63110265 CAATTTCCGC
Statistics
Matches: 375, Mismatches: 10, Indels: 6
0.96 0.03 0.02
Matches are distributed among these distances:
95 187 0.50
96 97 0.26
98 91 0.24
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (96 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACTTATCTCA
Found at i:63110126 original size:143 final size:144
Alignment explanation
Indices: 63109780--63110264 Score: 866
Period size: 143 Copynumber: 3.4 Consensus size: 144
63109770 ACACATCGCC
* *
63109780 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAGTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* * *
63109845 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTACC
66 CCATTCGGCTTTACCACATATACTTATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACC
63109910 ACATATACATATCTCA
129 ACATATACATATCTCA
63109926 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
63109991 CCATTCGGCTTTACCACATATACTTATCTCATACATATTTCACATTAGCCATT-GGCTTTACCAC
66 CCATTCGGCTTTACCACATATACTTATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
63110055 ATATACTTATCTCA
131 ATATACATATCTCA
63110069 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
63110134 CCATTCGGCTTTACC-CATATACTTATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACTTATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
63110198 ATATACATATCTCA
131 ATATACATATCTCA
* *
63110212 TACATATTTCACATTAGCCATTTGGCTTTACCACATATACTTATCTCATACAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
63110265 CAATTTCCGC
Statistics
Matches: 329, Mismatches: 9, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
142 37 0.11
143 179 0.54
144 21 0.06
146 92 0.28
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (144 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACTTATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
ATATACATATCTCA
Found at i:63122938 original size:50 final size:50
Alignment explanation
Indices: 63122813--63123049 Score: 255
Period size: 50 Copynumber: 4.7 Consensus size: 50
63122803 AGCTGAAGCT
* * * *
63122813 ATCTGATACGCATAGTAACCTGCACTTAGTACTACACATGCGACC-AACA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACC
* * * *
63122862 ATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACC
* * * * *
63122912 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-CC
* * *
63122963 AT-TGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAA-C
1 ATCTGA-TACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACC
* * *
63123012 AGTATGTTACACGTAGTAGCCTGCACTTAGTACTACAC
1 A-TCTGATACACATAGTAGCCTGCACTTAGTACTACAC
63123050 GTGTACTCAC
Statistics
Matches: 158, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
49 41 0.26
50 77 0.49
51 40 0.25
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACC
Found at i:63123023 original size:101 final size:101
Alignment explanation
Indices: 63122867--63123049 Score: 287
Period size: 101 Copynumber: 1.8 Consensus size: 101
63122857 CAACAATCCG
* * *
63122867 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTGATACACGTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTCAACATATGATACACGTAGTAGCC
63122932 TGCACTTAGTACTACACACGTGATCGAAGTCATTGA
66 TGCACTTAGTACTACACACGTGATCGAAGTCATTGA
* * * *
63122968 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CTTAACAGTATGTTACACGTAGTAGC
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTCAACA-TATGATACACGTAGTAGC
63123032 CTGCACTTAGTACTACAC
65 CTGCACTTAGTACTACAC
63123050 GTGTACTCAC
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
100 5 0.07
101 69 0.93
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (101 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTCAACATATGATACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCGAAGTCATTGA
Found at i:63128177 original size:68 final size:68
Alignment explanation
Indices: 63127993--63128181 Score: 200
Period size: 68 Copynumber: 2.8 Consensus size: 68
63127983 AATCATAGGT
* * * *
63127993 ACATGGCACCATATTGTGTAAGACCATAGCTAGGCTATGACAACGAATAAAGTTTGCCAGGATAA
1 ACATGGCACCATATTGTGTAAGACCATAGCTGGGCTATAACAACAAATGAAGTTTGCCAGGATAA
63128058 TAA
66 TAA
** ** ** * * **
63128061 ACATGAAACCATATTGTGTAAGACCATAATTGATCTATAAAAAAAAATGAAGTTTGTTAGGA-AA
1 ACATGGCACCATATTGTGTAAGACCATAGCTGGGCTATAACAACAAATGAAGTTTGCCAGGATAA
63128125 TTAA
66 -TAA
* * * *
63128129 ACATGGCATCATATTGTGTAAGGCCATAGCTGGGGTATTACAACAAATGAAGT
1 ACATGGCACCATATTGTGTAAGACCATAGCTGGGCTATAACAACAAATGAAGT
63128182 CCACAAGAAT
Statistics
Matches: 94, Mismatches: 26, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
67 2 0.02
68 92 0.98
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.26
Consensus pattern (68 bp):
ACATGGCACCATATTGTGTAAGACCATAGCTGGGCTATAACAACAAATGAAGTTTGCCAGGATAA
TAA
Found at i:63132192 original size:18 final size:18
Alignment explanation
Indices: 63132160--63132228 Score: 63
Period size: 20 Copynumber: 3.8 Consensus size: 18
63132150 AAATGATAAT
63132160 AATAT-ATAG-ATAAAAA
1 AATATAATAGTATAAAAA
63132176 AATATAATAGTATAAAAA
1 AATATAATAGTATAAAAA
* *
63132194 ATGACATAATAATATAAAATA
1 A--ATATAATAGTATAAAA-A
*
63132215 ATTATAATA-TATAA
1 AATATAATAGTATAA
63132229 TATGAAAGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
16 5 0.11
17 4 0.09
18 13 0.30
19 6 0.14
20 14 0.32
21 2 0.05
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
AATATAATAGTATAAAAA
Found at i:63132315 original size:11 final size:11
Alignment explanation
Indices: 63132295--63132381 Score: 55
Period size: 11 Copynumber: 8.3 Consensus size: 11
63132285 ATAATACGAG
63132295 TAAA-AATATA
1 TAAATAATATA
63132305 -ACAATAATATA
1 TA-AATAATATA
63132316 TAAATAATA-A
1 TAAATAATATA
63132326 TATAA-AATA-A
1 TA-AATAATATA
* *
63132336 T-AATAATTTG
1 TAAATAATATA
63132346 TGAAA-AATA-A
1 T-AAATAATATA
63132356 TAAATAATAATA
1 TAAATAAT-ATA
*
63132368 CAAATAATATA
1 TAAATAATATA
63132379 TAA
1 TAA
63132382 TAGAATAATT
Statistics
Matches: 60, Mismatches: 6, Indels: 21
0.69 0.07 0.24
Matches are distributed among these distances:
8 2 0.03
9 7 0.12
10 16 0.27
11 24 0.40
12 11 0.18
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (11 bp):
TAAATAATATA
Found at i:63132318 original size:13 final size:12
Alignment explanation
Indices: 63132300--63132341 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 12
63132290 ACGAGTAAAA
63132300 ATATAACAATAAT
1 ATATAA-AATAAT
63132313 ATAT-AAATAAT
1 ATATAAAATAAT
63132324 AATATAAAATAAT
1 -ATATAAAATAAT
63132337 A-ATAA
1 ATATAA
63132342 TTTGTGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 10 0.37
12 6 0.22
13 11 0.41
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (12 bp):
ATATAAAATAAT
Found at i:63132341 original size:30 final size:30
Alignment explanation
Indices: 63132302--63132415 Score: 83
Period size: 30 Copynumber: 3.7 Consensus size: 30
63132292 GAGTAAAAAT
*
63132302 ATAACAATAATATATAAATAATAATATAAA
1 ATAATAATAATATATAAATAATAATATAAA
* *
63132332 ATAATAATAATTTGTGAAA-AATAATA-AATA
1 ATAATAATAATATAT-AAATAATAATATAA-A
* *
63132362 ATAATACAAATAATATATAATAGAATAATTATATA
1 ATAAT---AATAATATATAA-ATAATAA-TATAAA
*
63132397 AT-ATAA-AATATAAAAATAA
1 ATAATAATAATATATAAATAA
63132416 GGTAAAAAGA
Statistics
Matches: 67, Mismatches: 8, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
29 5 0.07
30 33 0.49
31 5 0.07
32 2 0.03
33 9 0.13
34 7 0.10
35 5 0.07
36 1 0.01
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (30 bp):
ATAATAATAATATATAAATAATAATATAAA
Found at i:63133894 original size:12 final size:13
Alignment explanation
Indices: 63133875--63133905 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
63133865 AAATAAACAA
63133875 TCATTTATTTATT
1 TCATTTATTTATT
63133888 T-ATTTATTTATT
1 TCATTTATTTATT
63133900 TCATTT
1 TCATTT
63133906 GGTTTTAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (13 bp):
TCATTTATTTATT
Found at i:63140459 original size:46 final size:49
Alignment explanation
Indices: 63140387--63140490 Score: 142
Period size: 46 Copynumber: 2.2 Consensus size: 49
63140377 GACAGGACAG
* * * *
63140387 GACAGAAATGAGCCATGTAAGTCCATAT-CA-GT-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATACATATATATATGGCATTGGA
*
63140433 GACAGGAATGAGCCATGTAAGCCCATATATATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATACATATATATATGGCATTGGA
63140482 GACAGGAAT
1 GACAGGAAT
63140491 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
46 26 0.52
47 1 0.02
48 1 0.02
49 22 0.44
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (49 bp):
GACAGGAATGAGCCATGTAAGCCCATATACATATATATATGGCATTGGA
Found at i:63144783 original size:46 final size:48
Alignment explanation
Indices: 63144711--63144813 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 48
63144701 GACAGGACAG
* * * *
63144711 GACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
*
63144757 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
63144805 GACAGGAAT
1 GACAGGAAT
63144814 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 27 0.54
47 1 0.02
48 22 0.44
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
Found at i:63150162 original size:27 final size:27
Alignment explanation
Indices: 63150040--63150162 Score: 156
Period size: 27 Copynumber: 4.6 Consensus size: 27
63150030 AGTACCCCCA
* *
63150040 ATTTACATAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACTGTTTTACCCTCG
*
63150067 ATTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACTGTTTTACCCTCG
* * * *
63150094 ATTTATAGAATTACTATTTTACCATTG
1 ATTTACAGAATTACTGTTTTACCCTCG
* *
63150121 CTTTATAGAATTACTGTTTTACCCTCG
1 ATTTACAGAATTACTGTTTTACCCTCG
*
63150148 ATTTACAAAATTACT
1 ATTTACAGAATTACT
63150163 AAAATACCCT
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.42
Consensus pattern (27 bp):
ATTTACAGAATTACTGTTTTACCCTCG
Found at i:63150170 original size:27 final size:27
Alignment explanation
Indices: 63150140--63150386 Score: 191
Period size: 27 Copynumber: 9.1 Consensus size: 27
63150130 ATTACTGTTT
** *
63150140 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * **
63150167 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
**
63150194 TACCCTCGATCAGTAAAAATTACCAAAA
1 TACCCTCGATTTGT-AAAATTACCAAAA
* * * *
63150222 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
63150248 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
*
63150275 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* * **
63150302 TACCACT-GGTTTGTGAAATTACTGAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
* *
63150329 CACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
**
63150356 TACTCCT-GATTTACAAAATTA-CATAAA
1 TAC-CCTCGATTTGTAAAATTACCA-AAA
63150383 TACC
1 TACC
63150387 TTTGACTTTC
Statistics
Matches: 179, Mismatches: 33, Indels: 17
0.78 0.14 0.07
Matches are distributed among these distances:
26 21 0.12
27 134 0.75
28 24 0.13
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:63150187 original size:54 final size:54
Alignment explanation
Indices: 63150059--63150189 Score: 154
Period size: 54 Copynumber: 2.4 Consensus size: 54
63150049 ATTACCGTTT
* * * ***
63150059 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
* * * *
63150113 TACCATTGCTTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
* *
63150167 TACCCTTGGTTTACAAAATTACC
1 TACCCTTGATTTACAGAATTACC
63150190 AAAATACCCT
Statistics
Matches: 62, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
Found at i:63150198 original size:54 final size:54
Alignment explanation
Indices: 63150140--63150471 Score: 228
Period size: 54 Copynumber: 6.1 Consensus size: 54
63150130 ATTACTGTTT
* **
63150140 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * * *
63150194 TACCCTCGATCAGTA-AAAATTACCAAAATACCC-TAGTCTGTAAAATTGCTAAAA
1 TACCCTCGAT--TTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
* ** * *
63150248 TACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
* *** * * * *
63150302 TACCACT-GGTTTGTGAAATTACTGAAACACCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * *
63150356 TACTCCT-GATTTACAAAATTAC-ATAAATACCTTTGACTTTCTAAAAATTA-TAGAAA
1 TAC-CCTCGATTTACAAAATTACTA-AAATACCCTT-AGTTTGT-AAAATTACCA-AAA
* * * * * * * * *
63150412 TACCATTGGTTTACAAAATTAATGAAATACCTTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
63150466 TACCCT
1 TACCCT
63150472 TGTAGGGTGA
Statistics
Matches: 218, Mismatches: 45, Indels: 30
0.74 0.15 0.10
Matches are distributed among these distances:
52 1 0.00
53 20 0.09
54 127 0.58
55 32 0.15
56 38 0.17
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:63150239 original size:81 final size:81
Alignment explanation
Indices: 63150154--63150358 Score: 243
Period size: 81 Copynumber: 2.5 Consensus size: 81
63150144 CTCGATTTAC
* **
63150154 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAAATTACC
1 AAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCC-CGAGTCAGT-AAAATTACC
63150218 AAAATACC-CTAGTCTGT
64 AAAATACCACTAGTCTGT
* * * **
63150235 AAAATTGCTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
* *
63150300 AATACCACTGGTTTGT
66 AATACCACTAGTCTGT
* * * * *
63150316 GAAATTACTGAAACACCCTCAATTTGTAAAATTACCAAAATAC
1 AAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATAC
63150359 TCCTGATTTA
Statistics
Matches: 105, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
80 19 0.18
81 86 0.82
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.28
Consensus pattern (81 bp):
AAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
AATACCACTAGTCTGT
Found at i:63150374 original size:81 final size:78
Alignment explanation
Indices: 63150154--63150386 Score: 211
Period size: 81 Copynumber: 2.9 Consensus size: 78
63150144 CTCGATTTAC
* * ** ** *
63150154 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAAATTACCA
1 AAAATTACTAAAACACCCCTAATTTGTAAAATTACCAAAATACCCT-GAT--TTAAAAATTACCA
63150219 AAATACCCTAGTCTGT
63 AAATACCCTAGTCTGT
* * * *
63150235 AAAATTGCTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCA
1 AAAATTACTAAAACACCCCTAATTTGTAAAATTACCAAAATA-CCCTGA-TTT-AAAAATTACCA
* *
63150299 AAATACCACTGGTTTGT
63 AAATACC-CTAGTCTGT
* *
63150316 GAAATTACTGAAACA-CCCTCAATTTGTAAAATTACCAAAATACTCCTGATTTACAAAATTA-CA
1 AAAATTACTAAAACACCCCT-AATTTGTAAAATTACCAAAATAC-CCTGATTTA-AAAATTACCA
63150379 TAAATACC
63 -AAATACC
63150387 TTTGACTTTC
Statistics
Matches: 128, Mismatches: 15, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
79 1 0.01
80 25 0.20
81 97 0.76
82 5 0.04
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (78 bp):
AAAATTACTAAAACACCCCTAATTTGTAAAATTACCAAAATACCCTGATTTAAAAATTACCAAAA
TACCCTAGTCTGT
Found at i:63150438 original size:27 final size:27
Alignment explanation
Indices: 63150365--63150450 Score: 88
Period size: 27 Copynumber: 3.1 Consensus size: 27
63150355 ATACTCCTGA
*
63150365 TTTACAAAATTACAT-AAATACCTTTGAC
1 TTTACAAAATTA-ATGAAATACCTTTG-G
*
63150393 TTT-CTAAAAATT-ATAGAAATACCATTGG
1 TTTAC--AAAATTAAT-GAAATACCTTTGG
63150421 TTTACAAAATTAATGAAATACCTTTGG
1 TTTACAAAATTAATGAAATACCTTTGG
63150448 TTT
1 TTT
63150451 GTAGATTTAC
Statistics
Matches: 49, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
27 24 0.49
28 8 0.16
29 17 0.35
ACGTcount: A:0.41, C:0.13, G:0.08, T:0.38
Consensus pattern (27 bp):
TTTACAAAATTAATGAAATACCTTTGG
Found at i:63150548 original size:27 final size:27
Alignment explanation
Indices: 63150512--63150595 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
63150502 TAGGTAAAAA
* *
63150512 GACCGCAAAGCCCCTATAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
*
63150539 GATCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
* *
63150566 GACCGTAATA-CCCCTGTATGGTAAAAT
1 GACCGTAA-AGCCCCTGTAGGGTAAAGT
63150593 GAC
1 GAC
63150596 GAATATGCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
27 49 0.98
28 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:63151363 original size:16 final size:16
Alignment explanation
Indices: 63151342--63151372 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63151332 CAAATATGGG
*
63151342 CATGACATTTTGCATA
1 CATGACATGTTGCATA
63151358 CATGACATGTTGCAT
1 CATGACATGTTGCAT
63151373 GGGTTGGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:63151443 original size:25 final size:25
Alignment explanation
Indices: 63151403--63151483 Score: 128
Period size: 25 Copynumber: 3.3 Consensus size: 25
63151393 AGGAAGTGCT
*
63151403 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
63151428 AAAAGGGCTTTACCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
63151453 AAAAGGGCTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCG
63151477 AAAAGGG
1 AAAAGGG
63151484 TTTTTCCTAG
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 7 0.13
25 45 0.87
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:63151752 original size:31 final size:31
Alignment explanation
Indices: 63151714--63151854 Score: 219
Period size: 31 Copynumber: 4.5 Consensus size: 31
63151704 CGTTTACAGT
*
63151714 AAAGGCTTCGCCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
63151745 AAAGGCTTCGGTCCAGAGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
63151776 TAAGGCTTTGGCCCAGTGATATGATTTACGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
63151807 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
63151838 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
63151855 ACTTGTTAAA
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 99 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:63151794 original size:62 final size:62
Alignment explanation
Indices: 63151714--63151882 Score: 220
Period size: 62 Copynumber: 2.8 Consensus size: 62
63151704 CGTTTACAGT
* * *
63151714 AAAGGCTTCGCCCCAGTGATATGATTTATGAAAAGGCTTCGGTCCAGAGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTACGAAAAGGCTTCGGCCCAGAGATATGATTTATGA
* * * *
63151776 TAAGGCTTTGGCCCAGTGATATGATTTACGATAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTACGAAAAGGCTTCGGCCCAGAGATATGATTTATGA
*
63151838 AAAGGCTTCGGCCCAGT-ACT-TG-TTAAACG-AAAGGCTTCGGCCCAG
1 AAAGGCTTCGGCCCAGTGA-TATGATT-TACGAAAAGGCTTCGGCCCAG
63151883 TATATGCCAA
Statistics
Matches: 94, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
60 17 0.18
61 6 0.06
62 71 0.76
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (62 bp):
AAAGGCTTCGGCCCAGTGATATGATTTACGAAAAGGCTTCGGCCCAGAGATATGATTTATGA
Found at i:63151907 original size:93 final size:93
Alignment explanation
Indices: 63151715--63151888 Score: 214
Period size: 93 Copynumber: 1.9 Consensus size: 93
63151705 GTTTACAGTA
* * * *
63151715 AAGGCTTCGCCCCAGTGATATGATTTATGAAAAGGCTTCGGTCCAGAGATATGATTTATGATAAG
1 AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGAGATATGATTAACGATAAG
* ** *
63151780 GCTTTGGCCCAGTGATATGATTTACGAT
66 GCTTCGGCCCAGTGATATGAACTACAAT
*
63151808 AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTA-CT-TG-TTAAACGA-A
1 AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAG-AGATATGATT-AACGATA
63151869 AGGCTTCGGCCCAGT-ATATG
64 AGGCTTCGGCCCAGTGATATG
63151889 CCAAGACTAA
Statistics
Matches: 73, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
90 5 0.07
91 17 0.23
92 5 0.07
93 45 0.62
94 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (93 bp):
AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGAGATATGATTAACGATAAG
GCTTCGGCCCAGTGATATGAACTACAAT
Found at i:63153389 original size:13 final size:13
Alignment explanation
Indices: 63153371--63153399 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
63153361 GGTTGTTTAT
63153371 TAAACTAATTAAC
1 TAAACTAATTAAC
63153384 TAAACTAATTAAC
1 TAAACTAATTAAC
63153397 TAA
1 TAA
63153400 TTAAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:63156330 original size:6 final size:6
Alignment explanation
Indices: 63156321--63156371 Score: 93
Period size: 6 Copynumber: 8.5 Consensus size: 6
63156311 AATAAAATTG
*
63156321 AAATGA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
63156369 AAA
1 AAA
63156372 GATAAGAGGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:63158037 original size:12 final size:11
Alignment explanation
Indices: 63158018--63158054 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
63158008 TAGCTATGTG
*
63158018 GAGGAAAAAGT
1 GAGGGAAAAGT
*
63158029 GAGGGAAAAGA
1 GAGGGAAAAGT
63158040 GAGGGAAAAGT
1 GAGGGAAAAGT
63158051 GAGG
1 GAGG
63158055 ATTGATGCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.46, T:0.05
Consensus pattern (11 bp):
GAGGGAAAAGT
Found at i:63161880 original size:13 final size:13
Alignment explanation
Indices: 63161862--63161890 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
63161852 GGTTGTTTAT
63161862 TAAACTAATTAAC
1 TAAACTAATTAAC
63161875 TAAACTAATTAAC
1 TAAACTAATTAAC
63161888 TAA
1 TAA
63161891 TTAAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:63166674 original size:79 final size:79
Alignment explanation
Indices: 63166575--63166733 Score: 318
Period size: 79 Copynumber: 2.0 Consensus size: 79
63166565 AGATCATACT
63166575 AAAAGATGATGAAAAAGGGACGGTTGATGGACAACGAAGACTAAACCCCATTATGAAGGATGTAG
1 AAAAGATGATGAAAAAGGGACGGTTGATGGACAACGAAGACTAAACCCCATTATGAAGGATGTAG
63166640 TCAAGAAAGAAATC
66 TCAAGAAAGAAATC
63166654 AAAAGATGATGAAAAAGGGACGGTTGATGGACAACGAAGACTAAACCCCATTATGAAGGATGTAG
1 AAAAGATGATGAAAAAGGGACGGTTGATGGACAACGAAGACTAAACCCCATTATGAAGGATGTAG
63166719 TCAAGAAAGAAATC
66 TCAAGAAAGAAATC
63166733 A
1 A
63166734 TCAAGTGGTT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.46, C:0.13, G:0.25, T:0.16
Consensus pattern (79 bp):
AAAAGATGATGAAAAAGGGACGGTTGATGGACAACGAAGACTAAACCCCATTATGAAGGATGTAG
TCAAGAAAGAAATC
Found at i:63170170 original size:13 final size:13
Alignment explanation
Indices: 63170154--63170186 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
63170144 TTTAATTAAA
*
63170154 TTAGTTAATTAGT
1 TTAGATAATTAGT
63170167 TTAGATAATTAGT
1 TTAGATAATTAGT
63170180 TTA-ATAA
1 TTAGATAA
63170187 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:63177259 original size:39 final size:39
Alignment explanation
Indices: 63177212--63177393 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
63177202 AATGTTCGAG
63177212 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
63177251 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
63177290 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
63177329 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * * *
63177369 CCATAACCGGGCTATGTCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGC
63177394 GTTTGAACGA
Statistics
Matches: 124, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
39 96 0.77
40 28 0.23
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:63187981 original size:40 final size:40
Alignment explanation
Indices: 63187926--63188175 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
63187916 AACATTGGAA
63187926 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
63187966 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
63188006 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
63188046 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
63188086 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
63188125 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
63188166 CTATATCCGG
1 ATATATCCGG
63188176 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:63191046 original size:40 final size:40
Alignment explanation
Indices: 63190952--63191176 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
63190942 TATTCGAATA
* *
63190952 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
63190993 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
63191033 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
63191073 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
63191113 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
63191153 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
63191177 CTTACGCAAG
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 29 0.18
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:63197649 original size:46 final size:46
Alignment explanation
Indices: 63197599--63197774 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
63197589 TGGTTGAGCA
*
63197599 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
63197645 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
*
63197692 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
63197738 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63197775 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63197755 original size:93 final size:93
Alignment explanation
Indices: 63197596--63197766 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
63197586 GGATGGTTGA
*
63197596 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
63197661 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
63197689 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
63197754 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
63197767 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:63200598 original size:15 final size:15
Alignment explanation
Indices: 63200578--63200633 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
63200568 GTATCTTGGG
63200578 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
63200593 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
63200608 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
63200623 TTTCTTTATTC
1 TTTCTTTATTC
63200634 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:63203066 original size:46 final size:46
Alignment explanation
Indices: 63203016--63203191 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
63203006 TGGTTGAGCA
63203016 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
63203062 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
*
63203109 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
63203155 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63203192 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63203172 original size:93 final size:93
Alignment explanation
Indices: 63203013--63203183 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
63203003 GGATGGTTGA
*
63203013 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
63203078 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
63203106 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
63203171 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
63203184 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:63209870 original size:146 final size:143
Alignment explanation
Indices: 63209609--63209898 Score: 544
Period size: 146 Copynumber: 2.0 Consensus size: 143
63209599 AACACAAGCC
63209609 ACAAAGCACTAAAGACAATAGGTATCAACTCAATATAAGCCATGTACATTTAGAACAGTTTAGTA
1 ACAAAGCACTAAAGACAATAGGTATCAACTCAATATAAGCCATGTACATTTAGAACAGTTTAGTA
*
63209674 CAGCCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGAGTGCTCTATTTTTAC
66 CAACCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGAGTGCTCTATTTTTAC
63209739 TGCAAATAGTCGT
131 TGCAAATAGTCGT
63209752 ACAAAGCACTAAAGACAATAGGTATCAACTCAATATAAGCCATGTACATTTAGAACAACAGTTTA
1 ACAAAGCACTAAAGACAATAGGTATCAACTCAATATAAGCCATGTACATTTAG---AACAGTTTA
63209817 GTACAACCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGAGTGCTCTATTTT
63 GTACAACCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGAGTGCTCTATTTT
63209882 TACTGCAAATAGTCGT
128 TACTGCAAATAGTCGT
63209898 A
1 A
63209899 GACATGCACA
Statistics
Matches: 143, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
143 53 0.37
146 90 0.63
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (143 bp):
ACAAAGCACTAAAGACAATAGGTATCAACTCAATATAAGCCATGTACATTTAGAACAGTTTAGTA
CAACCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGAGTGCTCTATTTTTAC
TGCAAATAGTCGT
Found at i:63213628 original size:23 final size:22
Alignment explanation
Indices: 63213593--63213639 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
63213583 ATACATAAAC
63213593 TAATAACAAAATATATATACTAT
1 TAATAACAAAATATATA-ACTAT
* *
63213616 TAATAATATAATATATAACTAT
1 TAATAACAAAATATATAACTAT
63213638 TA
1 TA
63213640 GTAAAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.38
Consensus pattern (22 bp):
TAATAACAAAATATATAACTAT
Found at i:63213662 original size:30 final size:30
Alignment explanation
Indices: 63213626--63213699 Score: 148
Period size: 30 Copynumber: 2.5 Consensus size: 30
63213616 TAATAATATA
63213626 ATATATAACTATTAGTAAAAATATTAATAC
1 ATATATAACTATTAGTAAAAATATTAATAC
63213656 ATATATAACTATTAGTAAAAATATTAATAC
1 ATATATAACTATTAGTAAAAATATTAATAC
63213686 ATATATAACTATTA
1 ATATATAACTATTA
63213700 TTATAATATA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.38
Consensus pattern (30 bp):
ATATATAACTATTAGTAAAAATATTAATAC
Found at i:63213668 original size:18 final size:18
Alignment explanation
Indices: 63213647--63213699 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
63213637 TTAGTAAAAA
63213647 TATTAATACATATATAAC
1 TATTAATACATATATAAC
*
63213665 TATTAGT--A-A-A-AA-
1 TATTAATACATATATAAC
63213677 TATTAATACATATATAAC
1 TATTAATACATATATAAC
63213695 TATTA
1 TATTA
63213700 TTATAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 12
0.66 0.05 0.29
Matches are distributed among these distances:
12 6 0.22
13 2 0.07
14 2 0.07
15 2 0.07
16 2 0.07
17 2 0.07
18 11 0.41
ACGTcount: A:0.51, C:0.08, G:0.02, T:0.40
Consensus pattern (18 bp):
TATTAATACATATATAAC
Found at i:63217055 original size:17 final size:17
Alignment explanation
Indices: 63217033--63217066 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
63217023 CAAAACTAGT
63217033 TAAACTAATCAACCTAA
1 TAAACTAATCAACCTAA
63217050 TAAACTAATCAACCTAA
1 TAAACTAATCAACCTAA
63217067 ATTAACCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.24, G:0.00, T:0.24
Consensus pattern (17 bp):
TAAACTAATCAACCTAA
Found at i:63218796 original size:27 final size:26
Alignment explanation
Indices: 63218744--63218803 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
63218734 CCACATATAT
*
63218744 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
63218770 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
63218797 ATATCTG
1 ATATCTG
63218804 GCAGCCTCGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:63219490 original size:20 final size:20
Alignment explanation
Indices: 63219465--63219504 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
63219455 TACTAAGTCG
*
63219465 TAAGTCCTTGTGACACGTCA
1 TAAGTCCATGTGACACGTCA
63219485 TAAGTCCATGTGACACGTCA
1 TAAGTCCATGTGACACGTCA
63219505 GATTTAGCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (20 bp):
TAAGTCCATGTGACACGTCA
Found at i:63227116 original size:93 final size:93
Alignment explanation
Indices: 63227003--63227175 Score: 249
Period size: 93 Copynumber: 1.9 Consensus size: 93
63226993 CGCCCATAAG
* ** **
63227003 CGAACTCGGACTGAACTCAACAAGCTC-GAGTGTTCGCATCCATAAGTGAACTTGGACTCAACTC
1 CGAACTCGGACTCAACTCAACAAGCTCGGA-CATTCGCATCCATAAGTGAACTCAGACTCAACTC
*
63227067 AATGAGCTCGGATGCCTAGTTAGATCTCA
65 AACGAGCTCGGATGCCTAGTTAGATCTCA
* *
63227096 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
63227161 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
63227176 CAAATATCCC
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
93 68 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTAGATCTCA
Found at i:63229622 original size:15 final size:15
Alignment explanation
Indices: 63229566--63229645 Score: 69
Period size: 15 Copynumber: 5.4 Consensus size: 15
63229556 TAAAGATAAC
*
63229566 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
63229580 AAGAAATTCA-AGATA
1 AAGAAATCCAGA-ATA
*
63229595 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
63229610 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
*
63229625 AA-AAGATCCAGGATA
1 AAGAA-ATCCAGAATA
63229640 AAGAAA
1 AAGAAA
63229646 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
14 12 0.23
15 36 0.68
16 5 0.09
ACGTcount: A:0.61, C:0.12, G:0.15, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:63229641 original size:30 final size:30
Alignment explanation
Indices: 63229575--63229654 Score: 92
Period size: 30 Copynumber: 2.7 Consensus size: 30
63229565 CAAGAAAACC
*
63229575 GAATAAAGAAATTCAAGATAGAAAAACCCA
1 GAATAAAGAAATCCAAGATAGAAAAACCCA
*
63229605 GAATAAAGAAATCC-AGAATA-AAAAGATCCA
1 GAATAAAGAAATCCAAG-ATAGAAAA-ACCCA
* *
63229635 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
63229655 CGATACTATG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
29 6 0.14
30 35 0.81
31 2 0.05
ACGTcount: A:0.59, C:0.14, G:0.15, T:0.12
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAGAAAAACCCA
Found at i:63229654 original size:15 final size:15
Alignment explanation
Indices: 63229577--63229654 Score: 56
Period size: 15 Copynumber: 5.2 Consensus size: 15
63229567 AGAAAACCGA
*
63229577 ATAAAGAAATTCAAG
1 ATAAAGAAATCCAAG
*
63229592 ATAGAA-AAA-CCCAG
1 ATA-AAGAAATCCAAG
63229606 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
*
63229621 AATAAA-AAGATCCAGG
1 -ATAAAGAA-ATCCAAG
*
63229637 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
63229652 ATA
1 ATA
63229655 CGATACTATG
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
14 7 0.14
15 37 0.73
16 7 0.14
ACGTcount: A:0.59, C:0.14, G:0.14, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:63232638 original size:46 final size:46
Alignment explanation
Indices: 63232571--63232745 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
63232561 TGTAACCCGC
* *
63232571 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * *
63232617 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCG--GAC--GTTCGCAT
* * *
63232666 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
*
63232709 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
63232746 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 89 0.81
47 2 0.02
48 3 0.03
49 3 0.03
50 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:63232690 original size:92 final size:93
Alignment explanation
Indices: 63232579--63232749 Score: 290
Period size: 92 Copynumber: 1.8 Consensus size: 93
63232569 GCCCATAAGC
* *
63232579 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
63232644 CGAGCTC-GATGCCTAGTTACATCTCAT
66 CGAGCTCGGATGCCTAGTTACATCTCAT
* *
63232671 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
63232736 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
63232750 CAAATATCCA
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 67 0.92
93 6 0.08
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAT
Found at i:63239292 original size:40 final size:40
Alignment explanation
Indices: 63239246--63239470 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
63239236 CTTGCGCAAG
* * *
63239246 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
63239286 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
63239326 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
63239366 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
63239406 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
63239447 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
63239471 CATTCGAATA
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:63239341 original size:80 final size:80
Alignment explanation
Indices: 63239210--63239470 Score: 303
Period size: 80 Copynumber: 3.3 Consensus size: 80
63239200 CTCAAGAAAT
* * * * * * * *
63239210 CTTCGGGATTTAG-CCGGATATAACTACTTGCGC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
63239273 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
63239288 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
63239352 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
63239368 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
63239433 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
63239449 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
63239471 CATTCGAATA
Statistics
Matches: 154, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 94 0.61
81 33 0.21
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:63241424 original size:28 final size:27
Alignment explanation
Indices: 63241361--63241430 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
63241351 ATAGTGAGTC
63241361 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
63241388 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
63241416 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63241431 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:63244343 original size:21 final size:21
Alignment explanation
Indices: 63244314--63244365 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
63244304 AATTTTGGTG
63244314 TCAAGTTACAAGCTAACTTGA
1 TCAAGTTACAAGCTAACTTGA
*
63244335 TCATGTTACAAGCTAACTTGA
1 TCAAGTTACAAGCTAACTTGA
63244356 TCAAGTTACA
1 TCAAGTTACA
63244366 TATGAACCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (21 bp):
TCAAGTTACAAGCTAACTTGA
Found at i:63246772 original size:30 final size:30
Alignment explanation
Indices: 63246687--63246783 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
63246677 TAAACTAAAA
* *
63246687 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* * * * * *
63246717 TGAGTTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
*
63246747 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
63246776 ATGAGCTA
1 -TGAGCTA
63246784 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
Found at i:63248937 original size:30 final size:29
Alignment explanation
Indices: 63248892--63248976 Score: 109
Period size: 30 Copynumber: 2.8 Consensus size: 29
63248882 TTCTTTTGTT
*
63248892 TCAATTTCTTTTTCATCTTCTTTTTCACTC
1 TCAATTTCTTTTTCAT-TTCTTTTTCAATC
63248922 TCAAATTTC-TTTTCATTCTCTTTTTCAATC
1 TC-AATTTCTTTTTCATT-TCTTTTTCAATC
*
63248952 TCATTTTCTTTTTCATTTTCTTTTT
1 TCAATTTCTTTTTCA-TTTCTTTTT
63248977 GCATTTCAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
29 6 0.12
30 35 0.71
31 8 0.16
ACGTcount: A:0.14, C:0.22, G:0.00, T:0.64
Consensus pattern (29 bp):
TCAATTTCTTTTTCATTTCTTTTTCAATC
Found at i:63248976 original size:18 final size:18
Alignment explanation
Indices: 63248927--63248975 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
63248917 CACTCTCAAA
*
63248927 TTTC-TTTTCATTCTCTT
1 TTTCATTTTCATTTTCTT
* *
63248944 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
63248962 TTTCATTTTC-TTTT
1 TTTCATTTTCATTTT
63248976 TGCATTTCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 8 0.31
18 18 0.69
ACGTcount: A:0.10, C:0.20, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:63248983 original size:12 final size:12
Alignment explanation
Indices: 63248952--63248982 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
63248942 TTTTTCAATC
63248952 TCATTTTCTTTT
1 TCATTTTCTTTT
63248964 TCATTTTCTTTT
1 TCATTTTCTTTT
63248976 TGCATTT
1 T-CATTT
63248983 CAAAGGCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.72
13 5 0.28
ACGTcount: A:0.10, C:0.16, G:0.03, T:0.71
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:63248995 original size:12 final size:12
Alignment explanation
Indices: 63248980--63249009 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
63248970 TCTTTTTGCA
63248980 TTTCAAAGGCTT
1 TTTCAAAGGCTT
63248992 TTTCAAAGGCTT
1 TTTCAAAGGCTT
63249004 TTTCAA
1 TTTCAA
63249010 GTTCTCTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.43
Consensus pattern (12 bp):
TTTCAAAGGCTT
Found at i:63249113 original size:21 final size:20
Alignment explanation
Indices: 63249057--63249123 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
63249047 CTCTTGTCCC
*
63249057 TCTTTTCTTTTTATTTCATTTT
1 TCTTTTCTTTTT-TTGC-TTTT
*
63249079 T-TTTTCTTCTTTTGCTTTT
1 TCTTTTCTTTTTTTGCTTTT
63249098 TCTTTTCTTTTCTTTG-TTTT
1 TCTTTTCTTTT-TTTGCTTTT
63249118 CTCTTT
1 -TCTTT
63249124 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
19 5 0.13
20 15 0.38
21 18 0.46
22 1 0.03
ACGTcount: A:0.03, C:0.16, G:0.03, T:0.78
Consensus pattern (20 bp):
TCTTTTCTTTTTTTGCTTTT
Found at i:63250046 original size:11 final size:11
Alignment explanation
Indices: 63250030--63250070 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
63250020 AAAACACTTT
63250030 TTTTTTTC-AGA
1 TTTTTTTCGA-A
63250041 TTTTTTTCGAA
1 TTTTTTTCGAA
63250052 TTTTTTTTCGAA
1 -TTTTTTTCGAA
63250064 TTTTTTT
1 TTTTTTT
63250071 TAACTTGTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
11 16 0.57
12 12 0.43
ACGTcount: A:0.15, C:0.07, G:0.07, T:0.71
Consensus pattern (11 bp):
TTTTTTTCGAA
Found at i:63250046 original size:12 final size:12
Alignment explanation
Indices: 63250029--63250071 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
63250019 TAAAACACTT
63250029 TTTTTTTTC-AGA
1 TTTTTTTTCGA-A
63250041 -TTTTTTTCGAA
1 TTTTTTTTCGAA
63250052 TTTTTTTTCGAA
1 TTTTTTTTCGAA
63250064 TTTTTTTT
1 TTTTTTTT
63250072 AACTTGTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
11 9 0.31
12 20 0.69
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (12 bp):
TTTTTTTTCGAA
Found at i:63251831 original size:30 final size:30
Alignment explanation
Indices: 63251737--63251833 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
63251727 TAAACTAAAA
* *
63251737 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* * * * *
63251767 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* *
63251797 TGAGCTAAGGTTTAGCTCGTGAGTTGAA-T
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
63251826 ATGAGCTA
1 -TGAGCTA
63251834 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
Found at i:63252950 original size:4 final size:4
Alignment explanation
Indices: 63252941--63252968 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
63252931 TCATGGAACA
63252941 AAAT AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT
63252969 TTCATCTCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:63256694 original size:30 final size:29
Alignment explanation
Indices: 63256660--63256723 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
63256650 ATGATTCGGA
**
63256660 AGCTTTGGCACTAAGTGTTTGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTT-AACT
63256690 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAACT
63256719 AGCTT
1 AGCTT
63256724 CGACTACTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.28
30 23 0.72
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.38
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATTTAACT
Found at i:63257339 original size:25 final size:26
Alignment explanation
Indices: 63257311--63257365 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 26
63257301 GAGAAAGGTT
63257311 TATGATATGTAATGTTAATTTGCAA-
1 TATGATATGTAATGTTAATTTGCAAC
63257336 TATGATATGTAATGTTAATTTGCAAC
1 TATGATATGTAATGTTAATTTGCAAC
63257362 TATG
1 TATG
63257366 GCATGAATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 25 0.86
26 4 0.14
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.44
Consensus pattern (26 bp):
TATGATATGTAATGTTAATTTGCAAC
Found at i:63257374 original size:25 final size:25
Alignment explanation
Indices: 63257311--63257374 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
63257301 GAGAAAGGTT
*
63257311 TATGATATGTAATGTTAATTTGCAA
1 TATGACATGTAATGTTAATTTGCAA
*
63257336 TATGATATGTAATGTTAATTTGCAA
1 TATGACATGTAATGTTAATTTGCAA
*
63257361 CTATGGCATG-AATG
1 -TATGACATGTAATG
63257375 ATGTATGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 29 0.81
26 7 0.19
ACGTcount: A:0.34, C:0.06, G:0.19, T:0.41
Consensus pattern (25 bp):
TATGACATGTAATGTTAATTTGCAA
Found at i:63258430 original size:480 final size:480
Alignment explanation
Indices: 63257524--63258470 Score: 1606
Period size: 480 Copynumber: 2.0 Consensus size: 480
63257514 TGCCTTGTGG
* *
63257524 CCGTGTAAGAAAAGCAGTATTCTCTAAAAAAATTACACGGCCTTGACACACGTGCATGTCACATG
1 CCGTGTAAGAAAAGCAGTATTCTCTAAAAAAATTACACGACCTTGACACACGGGCATGTCACATG
*
63257589 ACCGTGGGCTAAAGTCAGTAGCTAGCTTAGTATCACACGGCCATAGAACACGGGCGTGCCTATTG
66 ACCGTGGGCTAAAGTCAGTAGCTAGCTTAGTATCACACAGCCATAGAACACGGGCGTGCCTATTG
* *
63257654 GCCGTGGGTAAAAGTCAGTATGGTCACCCTATTTTGGCACAGCTGGTTCACATGGGTGTGTATGA
131 GCCGTGGGTAAAAGTCAGTATGGTCACCCTATTTTGGCACAGCTAGTTCACATGGGTGTGTATAA
*
63257719 TGCCCGTGTAAGGCACACAGCCTGGACACACGGGCGTGTAACCTTAACAGAATAGAAAAATTTTC
196 TGCCCGTGTAAGGCACACAGCCTGGACACACGAGCGTGTAACCTTAACAGAATAGAAAAATTTTC
*
63257784 TAAGTGTGGAAAGTTGTGAACGTGTTCGGTTTAGTCCCGACCTCTTACTAATGCATGTTTAAGGT
261 TAAGTGTGGAAAGTTGTGAACATGTTCGGTTTAGTCCCGACCTCTTACTAATGCATGTTTAAGGT
* *
63257849 CTCATTGACCTAAGAAAGGGACTTATGTTGATGTTTGACTATGATGCCATGATGTTTGTGAAATG
326 CTCATTGACCTAAGAAAGAGACTTATGTTGATGTTTAACTATGATGCCATGATGTTTGTGAAATG
*
63257914 AATGCAAAGTGTTTTGATATGTTTAGTAACGCCGCTTAACCCTAGTCCGGTGATGGATACGAGTT
391 AATACAAAGTGTTTTGATATGTTTAGTAACGCCGCTTAACCCTAGTCCGGTGATGGATACGAGTT
63257979 AGGGGTGTTACATTTGGTCCCCTGA
456 AGGGGTGTTACATTTGGTCCCCTGA
* *
63258004 CCGTGTAAGAAAAGCAGTATTCTTTAAAAAAATTACACGACCTTGACACACGGGCGTGTCACATG
1 CCGTGTAAGAAAAGCAGTATTCTCTAAAAAAATTACACGACCTTGACACACGGGCATGTCACATG
* ** * *
63258069 GCCGTGGGCTAAAGTCAGTAGCTAGCTTAGTATCACACATTCATAGAGCGCGGGCGTGCCTATTG
66 ACCGTGGGCTAAAGTCAGTAGCTAGCTTAGTATCACACAGCCATAGAACACGGGCGTGCCTATTG
* * * *
63258134 GCCGTGGGTGAAAGTCAGTATGGTTACCCTGTTTTGGCACGGCTAGTTCACATGGGTGTGTATAA
131 GCCGTGGGTAAAAGTCAGTATGGTCACCCTATTTTGGCACAGCTAGTTCACATGGGTGTGTATAA
* ** *
63258199 TGCCCGTTTAAGGCACATGGCCTGGACACATGAGCGTGTAACCTTAACAGAATAGAAAAATTTTC
196 TGCCCGTGTAAGGCACACAGCCTGGACACACGAGCGTGTAACCTTAACAGAATAGAAAAATTTTC
* *
63258264 TAAGTGTGGAAAGTTGTGAACATGTTCGGTTTAGTCCCGATCTCTTCCTAATGCATGTTTAAGGT
261 TAAGTGTGGAAAGTTGTGAACATGTTCGGTTTAGTCCCGACCTCTTACTAATGCATGTTTAAGGT
*
63258329 CTCATTGACCTAAGAAAGAGACTTATGTTGATGTTTAACTATGATGCCATGATGTTTGTTAAATG
326 CTCATTGACCTAAGAAAGAGACTTATGTTGATGTTTAACTATGATGCCATGATGTTTGTGAAATG
* * * *
63258394 AATACGAAGTGTTTTGATATGTTTAGTAATGCCGCTTAACCCTAGTCTGGTGATGGATACGGGTT
391 AATACAAAGTGTTTTGATATGTTTAGTAACGCCGCTTAACCCTAGTCCGGTGATGGATACGAGTT
63258459 AGGGGTGTTACA
456 AGGGGTGTTACA
63258471 AGATTATTAG
Statistics
Matches: 435, Mismatches: 32, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
480 435 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (480 bp):
CCGTGTAAGAAAAGCAGTATTCTCTAAAAAAATTACACGACCTTGACACACGGGCATGTCACATG
ACCGTGGGCTAAAGTCAGTAGCTAGCTTAGTATCACACAGCCATAGAACACGGGCGTGCCTATTG
GCCGTGGGTAAAAGTCAGTATGGTCACCCTATTTTGGCACAGCTAGTTCACATGGGTGTGTATAA
TGCCCGTGTAAGGCACACAGCCTGGACACACGAGCGTGTAACCTTAACAGAATAGAAAAATTTTC
TAAGTGTGGAAAGTTGTGAACATGTTCGGTTTAGTCCCGACCTCTTACTAATGCATGTTTAAGGT
CTCATTGACCTAAGAAAGAGACTTATGTTGATGTTTAACTATGATGCCATGATGTTTGTGAAATG
AATACAAAGTGTTTTGATATGTTTAGTAACGCCGCTTAACCCTAGTCCGGTGATGGATACGAGTT
AGGGGTGTTACATTTGGTCCCCTGA
Found at i:63269392 original size:13 final size:13
Alignment explanation
Indices: 63269376--63269401 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63269366 CTGGACACAC
63269376 GCCCGTGTCCTTT
1 GCCCGTGTCCTTT
63269389 GCCCGTGTCCTTT
1 GCCCGTGTCCTTT
63269402 CACACAGCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.38, G:0.23, T:0.38
Consensus pattern (13 bp):
GCCCGTGTCCTTT
Found at i:63270431 original size:50 final size:49
Alignment explanation
Indices: 63270311--63270625 Score: 187
Period size: 47 Copynumber: 6.7 Consensus size: 49
63270301 GGATAAGTTG
* *
63270311 CCGATGCCATGTCGCAGACATGGTCTTACACTGGCTATCATCATCGAGC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGC
* * * *
63270360 CCAATGCCATATCCCAGACATGGTCTTACACTAGCTCTCGTAT-ATACGTG-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATC--ATCAT-CGAGC
* * * *
63270410 CTGATGCCATGTCCCAGACATGGTCTTATACTAGC-A-CAAC-TCTTAG-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATC-GAGC
* * * * * * *
63270456 CCGATG-CATGACCCAGACAT-GTTTTACATTGGCTATCATCTTCGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGC
* * * *
63270503 CTGATG-CATGTCCCAGACAT-GTCTTACAGTAGC-ACTCGTC-TCAATG-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCATCATCGA-GC
** * * * * * * *
63270549 AAGATGCCAT-TCCCCGACATGGTCTTACATTGGCTCTCATAAT-GTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGC
63270596 CCGATG-CATGTCCCAGACAT-GTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
63270626 GGCACACAAA
Statistics
Matches: 204, Mismatches: 45, Indels: 37
0.71 0.16 0.13
Matches are distributed among these distances:
44 9 0.04
45 15 0.07
46 41 0.20
47 65 0.32
48 2 0.01
49 34 0.17
50 33 0.16
51 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (49 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGC
Found at i:63271769 original size:3 final size:3
Alignment explanation
Indices: 63271761--63271813 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
63271751 CTATAACCTC
63271761 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
63271809 ATA AT
1 ATA AT
63271814 TTACCCAATT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:63275857 original size:40 final size:40
Alignment explanation
Indices: 63275798--63276005 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
63275788 CAATTGAATG
* * * *
63275798 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
63275838 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
63275878 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
63275918 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
63275958 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
63275998 ATATCCGG
1 ATATCCGG
63276006 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:63275936 original size:80 final size:80
Alignment explanation
Indices: 63275799--63276005 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
63275789 AATTGAATGA
* * ** * * *
63275799 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
63275864 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
63275877 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
63275942 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
63275959 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
63276006 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:63283974 original size:40 final size:40
Alignment explanation
Indices: 63283849--63284055 Score: 213
Period size: 40 Copynumber: 5.2 Consensus size: 40
63283839 CAATTGAATG
* * ** * **
63283849 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
63283889 ATATCCGGGTTAAGA-CCGAAGGCAATT-GTGCTAG-TGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
*
63283928 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * * *
63283968 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
63284008 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
63284048 ATATCCGG
1 ATATCCGG
63284056 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
39 30 0.21
40 108 0.77
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
Found at i:63292670 original size:40 final size:40
Alignment explanation
Indices: 63292621--63292828 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
63292611 TTTTCGGAAT
* * *
63292621 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * * ** * *
63292660 TTAACTCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
63292700 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
63292740 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * *
63292780 TTAGCCCAGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
63292820 TTAGCCCGG
1 TTAGCCCGG
63292829 GTATCATTCA
Statistics
Matches: 142, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 3 0.02
40 138 0.97
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:63300904 original size:40 final size:40
Alignment explanation
Indices: 63300855--63301062 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
63300845 TCTTCGGAAT
* * *
63300855 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
63300894 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
63300934 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
63300974 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
63301014 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
63301054 TTAGCCCGG
1 TTAGCCCGG
63301063 GTATCATTCA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 3 0.02
40 142 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:63304584 original size:80 final size:80
Alignment explanation
Indices: 63304500--63304648 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
63304490 TATGGTAACC
* * * *
63304500 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
63304564 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
63304580 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
63304645 CCGG
66 CCGG
63304649 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:63304590 original size:40 final size:38
Alignment explanation
Indices: 63304541--63304648 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
63304531 ATCACGATTT
*
63304541 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
63304581 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
63304621 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
63304649 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:63308611 original size:40 final size:40
Alignment explanation
Indices: 63308552--63308693 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
63308542 AAATTGAATG
* * *
63308552 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
63308592 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
63308632 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
63308672 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
63308694 GCATTTGTGC
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 3 0.04
40 82 0.96
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:63308717 original size:40 final size:39
Alignment explanation
Indices: 63308590--63308719 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
63308580 ATGCTGGAAA
* * *
63308590 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
63308631 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
63308669 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
63308710 TTATATCCGG
1 TTATATCCGG
63308720 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:63315842 original size:41 final size:44
Alignment explanation
Indices: 63315797--63315894 Score: 112
Period size: 45 Copynumber: 2.3 Consensus size: 44
63315787 TCTCAGACAA
* * * * *
63315797 GGTCTTACACGAATCA-A-AT-ACGATGCCGATGTCCCAAGCAT
1 GGTCTTACACGAACCACATATAACGATGCCAACGTACCAAACAT
*
63315838 GGTCTTACACGTAACCACATATAACGATGCCAACGTACCAAACGT
1 GGTCTTACACG-AACCACATATAACGATGCCAACGTACCAAACAT
63315883 GGTCTTACACGA
1 GGTCTTACACGA
63315895 GAATACATCT
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
41 11 0.23
42 4 0.09
43 1 0.02
44 3 0.06
45 28 0.60
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (44 bp):
GGTCTTACACGAACCACATATAACGATGCCAACGTACCAAACAT
Found at i:63316493 original size:15 final size:15
Alignment explanation
Indices: 63316470--63316500 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
63316460 TCAAAAATTC
63316470 CAATACAAAACATAT
1 CAATACAAAACATAT
*
63316485 CAATCCAAAACATAT
1 CAATACAAAACATAT
63316500 C
1 C
63316501 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:63317037 original size:14 final size:15
Alignment explanation
Indices: 63317020--63317048 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
63317010 TCACGAAAAT
63317020 TTCACACAT-ATAAA
1 TTCACACATAATAAA
63317034 TTCACACATAATAAA
1 TTCACACATAATAAA
63317049 CACATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:63320322 original size:20 final size:20
Alignment explanation
Indices: 63320286--63320323 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
63320276 CACATCCAAA
*
63320286 TACAAAATTTTACAAATCTT
1 TACAAAATTTGACAAATCTT
63320306 TACAAAATATTGA-AAATC
1 TACAAAAT-TTGACAAATC
63320324 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATTTGACAAATCTT
Found at i:63322679 original size:991 final size:991
Alignment explanation
Indices: 63320354--63335656 Score: 28012
Period size: 990 Copynumber: 15.5 Consensus size: 991
63320344 GGATGTTACA
* *
63320354 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGACTGAACGTTTACTGGGGCAATGAGTTGGAC
1 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
* *
63320419 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGAAAAGACTGAGTTAACACACAACGCATGCCAAT
66 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
*
63320484 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGTT
131 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGTT
*
63320549 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTGCGATTTACCCAATGAAAA
196 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAAA
63320614 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGAC
261 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGAC
63320679 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
326 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
63320744 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
391 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
*
63320809 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTCGGT
456 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGT
63320874 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
521 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
* * * * * *
63320939 TTCAACTATTTTTATCAATGCAATGTATATCGAATTTACTTTACTATTTCATTTGCTTCTTCTAA
586 TTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
* * *
63321004 TTTCTTAATTAGAAGGCAACTGATATTTAGACATAGAAGACTGTTCACATAATTATAAATTGATT
651 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
*
63321069 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTGAAAAATGAAAAT
716 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
63321134 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAG-GTTATAATTCTTGCCTTTTGGCTGGG
781 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
63321198 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
846 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
*
63321263 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTATTGTGGTAGG
911 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGG
63321328 GCTGTGTTTGGTGGTC
976 GCTGTGTTTGGTGGTC
*
63321344 TGGTTGGTGCAGGATTTGGAAAAAGAAGCAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
1 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
** *
63321409 ATTTTTTCACAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
66 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
* *
63321474 TTCAGCCCAAGTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGTT
131 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGTT
* * *
63321539 GTTTTAAAAAAGAATTTAGATTGAGGAGAAGATAGACAAGGGTTTAGCGATTTACCCAATGAAAA
196 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAAA
* *
63321604 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAATGTGGGAGAGATGCTTAGAC
261 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGAC
63321669 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
326 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
63321734 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
391 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
63321799 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGT
456 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGT
63321864 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
521 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
* * *
63321929 TTCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTCTTCTAA
586 TTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
* *
63321994 TTTCTTAATTAGAAGGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAATTGATT
651 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
*
63322059 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTCAAAAATGAAAAT
716 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
63322124 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
781 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
*
63322189 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCTATTTAGGATACTAATTTAGCACTTTTAGAACA
846 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
63322254 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGG
911 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGG
*
63322319 GCTATGTTTGGTGGTC
976 GCTGTGTTTGGTGGTC
*
63322335 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAATGAGTTGGAC
1 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
* *
63322400 ATTTTGCCAAAATGGATGTTGTGGCAACGTCGGAAAGACTGAGTTAACACTTAACGCATGCCAAT
66 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
*
63322465 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGTT
131 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGTT
* *
63322530 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGAAAAACATGGGTTTTGCGATTTACCCAATGAAAA
196 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAAA
63322595 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGAC
261 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGAC
*
63322660 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACGAG
326 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
* *
63322725 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCCAAAGTTGTTTCCTAAAGTTCTTTTTTTATTT
391 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
63322790 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGT
456 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGT
*
63322855 TTAGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
521 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
* * *
63322920 TTCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTCTTCTAA
586 TTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
* * *
63322985 TTTCTTAATTAGAAGGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTTTAAATTGATT
651 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
63323050 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
716 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
63323115 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
781 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
*
63323180 TCAATTGTCTGCACTTAAGTG-A---A----C--TTT--G----TAATTTAGCACTGTTAGAACA
846 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
*
63323229 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTATTGTGGTAGG
911 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGG
63323294 GCTGTGTTTGGTGGTC
976 GCTGTGTTTGGTGGTC
*
63323310 TGGTTGGTGCAGGAGTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
1 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
* * *
63323375 ATTTTTCCACAGTGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
66 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
* *
63323440 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTGAAAAATTGGAGAAGATAATATTGGGTT
131 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGTT
* * * *
63323505 GTTTTAAATAAGAATTTAGATTGAGGAGAAGATAGACAAGGGTTTAGCGATTTACCCAATGAAAA
196 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAAA
*
63323570 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGCTTAGAC
261 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGAC
63323635 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
326 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
63323700 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
391 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
63323765 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGT
456 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGT
63323830 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
521 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
* * *
63323895 TTCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTCTTCTAA
586 TTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
* *
63323960 TTTCTTAATTAGAA-GGAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAATTGATT
651 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
63324024 ACTTAAACATGATCAGAAGAATGAGTTTA-GTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
716 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
63324088 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
781 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
*
63324153 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCTATTTAGGATACTAATTTAGCACTTTTAGAACA
846 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
*
63324218 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTTGTAGG
911 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGG
63324283 GCTGTGTTTGGTGGTC
976 GCTGTGTTTGGTGGTC
*
63324299 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAATGAGTTGGAC
1 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
*
63324364 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACACAACGCATGCCAAT
66 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
* *
63324429 TTCAGCCCAACTTTACTTTTACGAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGTT
131 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGTT
63324494 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATA-ACATGGGTTTTGCGATTTACCCAATGAAAA
196 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAAA
63324558 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGAC
261 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGAC
63324623 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
326 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
*
63324688 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTT
391 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
*
63324753 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATATTGGT
456 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGT
63324818 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
521 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
*
63324883 TTCAACTATTTTTATGAATGTAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
586 TTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
*
63324948 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAATTGATT
651 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
63325013 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
716 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
63325078 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
781 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
63325143 TCAATTGTCTGCACTTAAGTGAACTTAGTT-CAATTTAGGATACTAATTTAGCACTTTTAGAACA
846 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
63325207 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTT-TTGTGGTAGG
911 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGG
63325271 G-TGTGTTTGGTGGTC
976 GCTGTGTTTGGTGGTC
63325286 TGGTTGGTGCAGGA-TTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
1 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
*
63325350 ATTTT-CCACAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
66 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
63325414 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCT-AAAAATAGG-GAAGATAATATTGGGTT
131 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGTT
* * * *
63325477 GTTTTAAATAAGAATTTAGATTGAGGA-AAGATAGACAAGGGTTTAGCGATTTACCCAATGAAAA
196 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAAA
*
63325541 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAAC-AAAAAGTGGGAGAGATGCTTAGAC
261 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGAC
63325605 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
326 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
63325670 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTC-TTTGTTATTT
391 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
63325734 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACAC-ATGTCAGATACTATTTTGGT
456 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGT
63325798 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
521 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
*
63325863 TTCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATT-TTC-TA
586 TTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
* *
63325926 TTTCTTAATTAGAAGGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAATTGATT
651 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
63325991 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
716 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
*
63326056 AAATCATTCTGTCATAGTGAATGATTAGTCTTCAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
781 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
*
63326121 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCTATTTAGGATACTAATTTAGCACTTTTAGAACA
846 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
63326186 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTA-TTGTTACTTTTAATTTCTTGTGGTAGG
911 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGG
63326250 GCTGTGTTTGGTGGTC
976 GCTGTGTTTGGTGGTC
* * *
63326266 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAAGAGTGAACGTTTACTGGGGCAATGAGTTCGAC
1 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
63326331 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
66 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
* * * * *
63326396 TTTATCCCAACTTTACTTGTACCAAAAAAGTCTGCCTAAAGAGTAGGAGAAGATAATATTGGGTT
131 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGTT
63326461 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAAA
196 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAAA
*
63326526 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGAC
261 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGAC
* *
63326591 GAGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGACATCACAAG
326 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
63326656 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
391 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
63326721 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGT
456 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGT
63326786 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
521 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
63326851 TTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
586 TTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
*
63326916 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTA-ATAATTGAT
651 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATA-AACTGAT
63326980 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
715 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
63327045 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
780 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
63327110 GTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAAC
845 GTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAAC
*
63327175 ATTGTGCAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTT-ATTTCTTGTGGTAG
910 ATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
63327239 GGCTGTGTTT-GTGGT-
975 GGCTGTGTTTGGTGGTC
*
63327254 TGGGTAGGTGCAGGA-TTGG-AAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
1 T-GGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
63327317 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
65 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
63327382 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGT
130 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGT
* * * *
63327447 TGTTTTAAATAAGAATTTAGATTGAGGAGAAGATAGACAAGGGTTTTGCGATTTACCCAACGAAA
195 TGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAA
63327512 AATGCTAT-AAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGA
260 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGA
63327576 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
325 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
63327641 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
390 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
63327706 TCCATTAGTGTTCCTTC-AACAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTG
455 TCCATTAGTGTTCCTTCGAA-AGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTG
*
63327770 ATTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCAT-AGGTTGGGATTACTTTTAATGAAA
519 GTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAA
*
63327834 TCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCT
584 CCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCT
63327899 TATTTCTTAATTAGAATGCAAATGAT-TTTAGACATAGAAGACTGTTCACATAATTATAAACTGA
649 TATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGA
63327963 TTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAA
714 TTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAA
63328028 ATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTG
779 ATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTG
63328093 GGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAA
844 GGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAA
63328158 CATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTT-TTACTTTTAATTTCTTGTGGTA
909 CATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTA
63328222 GGGCTGTGTTTGGTGGTC
974 GGGCTGTGTTTGGTGGTC
63328240 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGC-AAGAGTTGGAC
1 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
63328304 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
66 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
63328369 TTCAGCCCAACTTTAC-TTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATT-GGTT
131 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGTT
*
63328432 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAAA
196 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAAA
*
63328497 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAAC-AAAAAGTGGGAGAGATGTTTAGAC
261 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGAC
*
63328561 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAT
326 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
63328626 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTT-TTT
391 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
63328690 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATA--A-TTTGGT
456 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGT
63328752 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
521 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
63328817 TTCAACTATTTTTA--AATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
586 TTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
63328880 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
651 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
63328945 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
716 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
*
63329010 AAATCATTCTGTCATAGTGAATGATTTGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
781 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
63329075 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
846 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
63329140 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGG
911 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGG
63329205 GCTGTGTTTGGTGGTC
976 GCTGTGTTTGGTGGTC
63329221 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
1 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
63329286 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
66 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
* **
63329351 TTCAGCCCAACTTTACATTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGACT
131 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGTT
* * *
63329416 GTTTTAAATAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGGAAA
196 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAAA
*
63329481 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATGTTTAGA
261 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGA-TAACAAAAAAGTGGGAGAGATGTTTAGA
63329546 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
325 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
63329611 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
390 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
*
63329676 TCCATTCGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGG
455 TCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGG
*
63329741 TTT-GAATTTTATTTCCCAGCCTATGAGTCAAATCTCAT-AGGTTGGGATTACTTTTAATGAAAT
520 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAAC
63329804 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
585 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
63329869 ATTTCTTAATTAGAATGCAAA-GATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
650 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
63329933 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
715 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
63329998 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
780 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
63330063 GTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAAC
845 GTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAAC
63330128 ATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
910 ATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
63330193 GGCTGTGTTTGGTGGTC
975 GGCTGTGTTTGGTGGTC
*
63330210 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGTGGC-AAGAGTTGGAC
1 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
63330274 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
66 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
**
63330339 TTCAGCCCAACTTTAC-TTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGACT
131 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGTT
* *
63330403 GTTTTAAATAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATG--AA
196 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAAA
*
63330466 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGAC
261 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGAC
*
63330531 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAT
326 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
63330596 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
391 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
* * * * **
63330661 CCATTCGTGTTCCTTCGAAGGATTGAATTGAAGCAGTTGAACATAATGTCAGATAAAATTTTGGT
456 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGT
63330726 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
521 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
* *
63330791 TTCAACTATTTTTACGAATGAAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
586 TTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
* * * *
63330856 TTTCTTAGTTGGAATGCAAATGATATTTAGACATAAAAGACTATTCACATAATTATAAACTGATT
651 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
63330921 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
716 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
63330986 AAATCA-T-TGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
781 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
* *
63331049 TCAATTGTTTACACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
846 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
*
63331114 TTGTGCAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGG
911 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGG
63331179 GCTGTGTTTGGTGGTC
976 GCTGTGTTTGGTGGTC
* *
63331195 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAATGTTTACTGGGGCAGAGAGTTGGAC
1 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
*
63331260 ATTTTGCCAAAATGGATGTTTTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
66 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
63331325 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGTT
131 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGTT
* *
63331390 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACGCTATGAAAA
196 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAAA
* *
63331455 ATGCTATAAAAAGCCAAATGAGGAAACACTAAATGACAACAAAAAAGTGGGAGAGATGTTTAGAC
261 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGAC
63331520 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTT-TTAGCCATCACAAG
326 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
63331584 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
391 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
63331649 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATA--ATTTTGGT
456 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGT
63331712 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAA-C
521 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
63331776 TTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
586 TTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
63331841 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
651 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
63331906 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAAGCTTAAAAATGAAAA
716 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTG-AAGCTTAAAAATGAAAA
* * *
63331971 TAATTCATTCTATCGTAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
780 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
*
63332036 GTCAATTGTCTGCACTTAAATGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAAC
845 GTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAAC
* *
63332101 ATTGTGCAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTATTTTTAATTTCTTGTGGTAG
910 ATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
63332166 GGCTGTGTTTGGTGGTC
975 GGCTGTGTTTGGTGGTC
*
63332183 TGGTTGGTGCAGGATTTGG-AAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAATGAGTTGGA-
1 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
63332246 ATTTTGCCAAAATGGATGTT-TGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
66 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
63332310 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGTT
131 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGTT
*
63332375 GTTTTAAATAAGAATTT-AATTGAGGAGAAGATAGACA-GGGTTTTGCGATTTACCCAATG-AAA
196 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAAA
63332437 ATGCTAT-AAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGAC
261 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGAC
* * *
63332501 GTGAATAAGTGTTTGCCTATGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCGTCACAAG
326 GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
*
63332566 ATGTAGTGCTGCTGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
391 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
63332631 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGT
456 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGT
63332696 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
521 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
63332761 TTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCA-TTGATT-TTCTTA
586 TTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
63332824 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
651 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
63332889 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
716 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
63332954 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
781 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
63333019 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
846 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
*
63333084 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTTTTACTTTTAATTTCTTGTGGTAGG
911 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGG
*
63333149 GCTGTGTTTGTTGGT-
976 GCTGTGTTTGGTGGTC
* * *
63333164 TGGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
1 T-GGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
*
63333229 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTCAGTTAACACTCAACGCATGCCAA
65 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
63333294 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGT
130 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGT
* *
63333359 TGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTGCGATTTACCCTATGAAA
195 TGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAA
*
63333424 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATGTTTAG
260 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGA-TAACAAAAAAGTGGGAGAGATGTTTAG
63333489 ACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACA
324 ACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACA
63333554 AGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTAT
389 AGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTAT
*
63333619 TTCCATTCGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTG
454 TTCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTG
63333684 GTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAA
519 GTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAA
* * *
63333749 CCTTCAACTATTTTTCTGAATGCACTATATATCTAATTTACTTTACTATTTCATTTGATTGTTCT
584 CCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCT
*
63333814 TATTTGTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGA
649 TATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGA
63333879 TTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAA
714 TTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAA
63333944 ATAAATCATTCTGT-ATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTG
779 ATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTG
63334008 GGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAA
844 GGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAA
63334073 CATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTA
909 CATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTA
63334138 GGGCTGTGTTTGGTGGTC
974 GGGCTGTGTTTGGTGGTC
* * * * *
63334156 TGATTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACCTTTACTGTGGCGAGGAGTTGGAC
1 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
*
63334221 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACAATCAACGCATGCCAAT
66 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
**
63334286 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGACT
131 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGTT
* * * *
63334351 ATTTTAAATAAGAATTTAAATTGAGGAG-AGATAAACATGGGTTTTGCGATTTACCCTATGAAAA
196 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAAA
*
63334415 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATGTTTAGA
261 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGA-TAACAAAAAAGTGGGAGAGATGTTTAGA
*
63334480 GGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
325 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
63334545 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
390 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
*
63334610 TCCATTCGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGG
455 TCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGG
* * *
63334675 TTTGAAATTTTATTTCCCAGCCTATGAGTCAAATCTCATATGGTTGGGATTACTTTTAATGAAAT
520 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAAC
63334740 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
585 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
*
63334805 ATTTCTTAATTAGAATGCAAAAGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
650 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
*
63334870 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAACTTAAAAATGAAAA
715 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
63334935 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
780 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
63335000 GTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAAC
845 GTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAAC
*
63335065 ATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGCTACTTTTAATTTCTTGTGGTAG
910 ATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
*
63335130 GGCTGTGTTTGGTGCTC
975 GGCTGTGTTTGGTGGTC
* * *
63335147 TGGTTGGTGCAGGATTTGGAAAAAGAAAGAAAGGAGTGAACGTTTACTGTGGCAAGGAGTTGGAC
1 TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
63335212 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
66 ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
**
63335277 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGACT
131 TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGTT
* * * * *
63335342 ATTTTAAATAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTACGATTTACCCTATGGAAA
196 GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAAA
* * *
63335407 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGCGGGAGAGATGTATAGA
261 ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGA-TAACAAAAAAGTGGGAGAGATGTTTAGA
63335472 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
325 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
*
63335537 GATGTAGTGCTGCCGAAGCGTGCGCTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
390 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
*
63335602 TCCATTCGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGAT
455 TCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGAT
63335657 TGTAACACCC
Statistics
Matches: 13926, Mismatches: 300, Indels: 172
0.97 0.02 0.01
Matches are distributed among these distances:
973 121 0.01
974 78 0.01
975 742 0.05
977 1 0.00
978 241 0.02
979 158 0.01
980 485 0.03
981 346 0.02
982 710 0.05
983 407 0.03
984 1004 0.07
985 1175 0.08
986 1053 0.08
987 798 0.06
988 1067 0.08
989 1053 0.08
990 2212 0.16
991 1848 0.13
992 427 0.03
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (991 bp):
TGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAC
ATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAAT
TTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGTT
GTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAAAA
ATGCTATAAAAAGCCAAATGAGGAAACACTAAACGATAACAAAAAAGTGGGAGAGATGTTTAGAC
GTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTT
CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGT
TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
TTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
TCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGG
GCTGTGTTTGGTGGTC
Found at i:63337278 original size:80 final size:80
Alignment explanation
Indices: 63337194--63337342 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
63337184 TATGGTAACC
* * * *
63337194 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
63337258 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
63337274 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
63337339 CCGG
66 CCGG
63337343 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:63337284 original size:40 final size:38
Alignment explanation
Indices: 63337235--63337342 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
63337225 ATCACGATTT
*
63337235 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
63337275 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
63337315 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
63337343 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:63345098 original size:80 final size:80
Alignment explanation
Indices: 63345014--63345162 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
63345004 TATGGTAACC
* * * *
63345014 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
63345078 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
63345094 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
63345159 CCGG
66 CCGG
63345163 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:63345104 original size:40 final size:38
Alignment explanation
Indices: 63345055--63345162 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
63345045 ATCACGATTT
*
63345055 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
63345095 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
63345135 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
63345163 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:63349159 original size:990 final size:992
Alignment explanation
Indices: 63346881--63354090 Score: 13267
Period size: 982 Copynumber: 7.3 Consensus size: 992
63346871 GGCTGTCACA
* *
63346881 CAGATACTATTTTGGTTTGAAATTTTATTTCCCAGCCTATGAGTCAAATCTCATATGGTTGGGAT
1 CAGATACTATTTTGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGAT
*
63346946 TACTTTTAATGAAATCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTT
66 TACTTTTAATGAAACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTT
*
63347011 CATTTGATTGTTCTTATTTCTTAATTAGAATGCAAAAGATATTTAGACATAGAAGACTGTTCACA
131 CATTTGATTGTTCTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACA
63347076 TAATTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAA
196 TAATTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAA
*
63347141 GCTTAAAAATGAAAATAAATCATTATGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTC
261 GCTTAAAAATGAAAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTC
63347206 TTGCCTTTTGGCTGGGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATT
326 TTGCCTTTTGGCTGGGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATT
63347271 TAGCACTTTTAGAACATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTT
391 TAGCACTTTTAGAACATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTT
*
63347336 AATTTCTTGTGGTAGGGCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAATAAAG
456 AATTTCTTGTGGTAGGGCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAG
* *
63347401 GAGTGAACGTTTACTGTGGCAAGGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGG
521 GAGTGAACGTTTACTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGG
63347466 AAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAACTTTAC-TTTACCAAAAAAGTCT
586 AAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCT
** *
63347530 GCCTAAAAAATAGGAGAAGATAATATTGGACTGTTTTAAATAAGAATTTAAATTGAGGAGAAGAT
651 GCCTAAAAAATAGGAGAAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGAT
63347595 AGACATGGGTTTTGCGATTTACCCTATG--AAATGCTATAAAAAGCCAAATGAGGAAACACTAAA
716 AGACATGGGTTTTGCGATTTACCCTATGAAAAATGCTATAAAAAGCCAAATGAGGAAACACTAAA
63347658 CGACGAACAAAAAA---GGAGAGATGTTTAGACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGA
781 CGACGAACAAAAAAGTGGGAGAGATGTTTAGACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGA
63347720 AAGTCAAAGGCATTCCTTCTTAGCCATCACAAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAG
846 AAGTCAAAGGCATTCCTTCTTAGCCATCACAAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAG
63347785 CGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTTCCATTCGTGTTCCTTCGAAAGATTGAA-T---
911 CGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTTCCATTCGTGTTCCTTCGAAAGATTGAATTGAA
63347846 GTAGTTGAACACAATGT
976 GTAGTTGAACACAATGT
63347863 CAGATACTATTTTGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGAT
1 CAGATACTATTTTGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGAT
63347928 TACTTTTAATGAAACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTT
66 TACTTTTAATGAAACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTT
* *
63347993 CATTTGATTGTTCTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTATTTACA
131 CATTTGATTGTTCTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACA
63348058 TAATTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAA
196 TAATTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAA
* * *
63348123 GCTTAAAAATGAAAATAAATCAATCTGTCATAGTGAATGATTAGTCTTGAAAAGATTTATATTTC
261 GCTTAAAAATGAAAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTC
63348188 TTGCCTTTTGGCTGGGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATT
326 TTGCCTTTTGGCTGGGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATT
*
63348253 TAGCACTTTTAGAACATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTTTTTGTTACTTTT
391 TAGCACTTTTAGAACATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTT
*
63348318 AATTTCTTGTGGTAGGGCTGTGTTTGGTGGTCTAGTTGGTGCAGGATTTGGAAAAAGAAACAAAG
456 AATTTCTTGTGGTAGGGCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAG
* *
63348383 GAGAGAACGTTTATTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGG
521 GAGTGAACGTTTACTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGG
*
63348448 AAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAACTTTACATTTACCAAAAAAGTCT
586 AAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCT
*
63348513 GCCTATAAAATAGGAGAAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGAT
651 GCCTAAAAAATAGGAGAAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGAT
*
63348578 AAACATGGGTTTTGCGATTTACCCTATGAAAAATGCTATAAAAAGCCAAATGAGGAAACACTAAA
716 AGACATGGGTTTTGCGATTTACCCTATGAAAAATGCTATAAAAAGCCAAATGAGGAAACACTAAA
*
63348643 TGACGAAC-AAAAAGTGGGAGAGATGTTTAGACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGA
781 CGACGAACAAAAAAGTGGGAGAGATGTTTAGACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGA
63348707 AAGTCAAAGGCATTCCTTCTTAGCCATCACAAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAG
846 AAGTCAAAGGCATTCCTTCTTAGCCATCACAAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAG
*
63348772 CGAAAGTTGTTTCCTAAAGTTCTTTT-TTATTTCCATTCGTGTTCCTTCGAAAGATTGAATTGAT
911 CGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTTCCATTCGTGTTCCTTCGAAAGATTGAATTGAA
*
63348836 GTAGCTGAACACAATGT
976 GTAGTTGAACACAATGT
*
63348853 CAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGAT
1 CAGATACTATTTTGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGAT
63348918 TACTTTTAATGAAACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTT
66 TACTTTTAATGAAACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTT
63348983 CATTTGATTGTTCTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACA
131 CATTTGATTGTTCTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACA
63349048 TAATTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAA
196 TAATTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAA
63349113 GCTTAAAAATGAAAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTC
261 GCTTAAAAATGAAAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTC
63349178 TTGCCTTTTGGCTGGGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATT
326 TTGCCTTTTGGCTGGGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATT
63349243 TAGCACTTTTAGAACATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTT
391 TAGCACTTTTAGAACATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTT
63349308 AATTTCTTGTGGTAGGGCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAG
456 AATTTCTTGTGGTAGGGCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAG
63349373 GAGTGAACGTTTACT-GGGC-AAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGG
521 GAGTGAACGTTTACTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGG
63349436 AAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCT
586 AAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCT
** *
63349501 GCCTAAAAAATAGGAGAAGATAATATTGGACT-TTTTAAATAAGAATTTAAATTGAGGAGAAGAT
651 GCCTAAAAAATAGGAGAAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGAT
63349565 AGACATGGGTTTTGCGATTTACCCTATG-AAAATGCTATAAAAAGCCAAATGAGGAAACACTAAA
716 AGACATGGGTTTTGCGATTTACCCTATGAAAAATGCTATAAAAAGCCAAATGAGGAAACACTAAA
63349629 CGACGAACAAAAAAGTGGGAGAGATG-TTAGACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGA
781 CGACGAACAAAAAAGTGGGAGAGATGTTTAGACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGA
63349693 AAGTCAAAGGCATTCCTTCTTAGCCATCACAAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAG
846 AAGTCAAAGGCATTCCTTCTTAGCCATCACAAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAG
63349758 CGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTTCCATTCGTGTTCCTTCGAAAGATTGAATTGAA
911 CGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTTCCATTCGTGTTCCTTCGAAAGATTGAATTGAA
63349823 GTAGTTGAACACAATGT
976 GTAGTTGAACACAATGT
63349840 CAGATACTATTTTGGTTT-GAATTTTATTTCCCAGCCTATGAGTCAAATCTCAT-AGGTTGGGAT
1 CAGATACTATTTTGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGAT
63349903 TACTTTTAATGAAA-CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTT
66 TACTTTTAATGAAACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTT
63349967 CATTTGATTGTTCTTATTTCTTAATTAGAATGCAAA-GATATTTAGACATAGAAGACTGTTCACA
131 CATTTGATTGTTCTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACA
63350031 TAATTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAA
196 TAATTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAA
63350096 GCTTAAAAATGAAAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTC
261 GCTTAAAAATGAAAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTC
63350161 TTGCCTTTTGGCTGGGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATT
326 TTGCCTTTTGGCTGGGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATT
63350226 TAGCACTTTTAGAACATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTT
391 TAGCACTTTTAGAACATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTT
63350291 AATTTCTTGTGGTAGGGCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAA-AAAG
456 AATTTCTTGTGGTAGGGCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAG
*
63350355 GAGTGAACGTTTACTGTGGC-AAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGG
521 GAGTGAACGTTTACTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGG
63350419 AAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAACTTTAC-TTTACCAAAAAAGTCT
586 AAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCT
** *
63350483 GCCTAAAAAATAGGAGAAGATAATATTGGACTGTTTTAAATAAGAATTTAAATTGAGGAGAAGAT
651 GCCTAAAAAATAGGAGAAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGAT
63350548 AGACATGGGTTTTGCGATTTACCCTATG--AAATGCTATAAAAAGCCAAATGAGGAAACACTAAA
716 AGACATGGGTTTTGCGATTTACCCTATGAAAAATGCTATAAAAAGCCAAATGAGGAAACACTAAA
63350611 CGACGAACAAAAAA--GGGAGAGATGTTTAGACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGA
781 CGACGAACAAAAAAGTGGGAGAGATGTTTAGACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGA
63350674 AAGTCAAAGGCATTCCTTCTTAGCCATCACAAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAG
846 AAGTCAAAGGCATTCCTTCTTAGCCATCACAAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAG
*
63350739 CGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTTCCATTCGTGTTCCTTCGAAAGATTGAATTGAT
911 CGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTTCCATTCGTGTTCCTTCGAAAGATTGAATTGAA
63350804 GTAGTTGAACACAATGT
976 GTAGTTGAACACAATGT
63350821 CAGATACTATTTTGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGAT
1 CAGATACTATTTTGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGAT
*
63350886 TACTTTTAATGAAACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTCACTATTT
66 TACTTTTAATGAAACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTT
* *
63350951 CATTTGATTGTTCTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTATTTACA
131 CATTTGATTGTTCTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACA
63351016 TAATTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAA
196 TAATTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAA
63351081 GCTTAAAAATGAAAATAAATCA-TCTGTCATAGTGAATGATTAGTCTTGAAAAGA-TTAT-ATTC
261 GCTTAAAAATGAAAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTC
63351143 TTGCCTTTTGGCTGGGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATT
326 TTGCCTTTTGGCTGGGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATT
63351208 TAGCACTTTTAGAACATTGTACAAGAAGATTGGATAGTGCTTAAATATTATT-TTTGTTACTTTT
391 TAGCACTTTTAGAACATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTT
63351272 AATTTCTTGTGGTAGGGCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAG
456 AATTTCTTGTGGTAGGGCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAG
*
63351337 GAGAGAACGTTTACTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGG
521 GAGTGAACGTTTACTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGG
63351402 AAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAACTTTA--TTTACCAAAAAAGTCT
586 AAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCT
63351465 GCCT-AAAAATAGGAGAAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGAT
651 GCCTAAAAAATAGGAGAAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGAT
* *
63351529 AAACATGGGTTTTGCGATTTACCCTATGAAAAATGCTATATAAAGCCAAATGAGGAAACACTAAA
716 AGACATGGGTTTTGCGATTTACCCTATGAAAAATGCTATAAAAAGCCAAATGAGGAAACACTAAA
* * *
63351594 TGACGAACTAAAAAGTGGGAGAGATGTTTAGACGTGAATAAGTGTTTGGTTACGTAAGGGAAAGA
781 CGACGAACAAAAAAGTGGGAGAGATGTTTAGACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGA
*
63351659 AAGTCAAAGGTATTCCTTCTTAGCCATCACAAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAG
846 AAGTCAAAGGCATTCCTTCTTAGCCATCACAAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAG
63351724 CGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTTCCATT-GTGTTCCTTC-AAAGATTGAATTG-A
911 CGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTTCCATTCGTGTTCCTTCGAAAGATTGAATTGAA
63351786 GTAGTTGAACACAATGT
976 GTAGTTGAACACAATGT
*
63351803 CAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGAT
1 CAGATACTATTTTGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGAT
63351868 TACTTTTAATGAAACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTT
66 TACTTTTAATGAAACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTT
* *
63351933 CATTTGATTGTTCTTATTTCTTAATTAGAATACAAATGATATTTAGACATAGAAGACTCTTCACA
131 CATTTGATTGTTCTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACA
63351998 TAATTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAA
196 TAATTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAA
63352063 GCTTAAAAATGAAAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTC
261 GCTTAAAAATGAAAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTC
*
63352128 TTGCCTTTCGGCTGGGTCAATTG--TGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATT
326 TTGCCTTTTGGCTGGGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATT
*
63352191 TAGCTCTTTTAGAACATTGTACAAGAAGATTGGATAGTGCTT-AATATTATTA-TTGTTACTTTT
391 TAGCACTTTTAGAACATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTT
63352254 AATTTCTTGTGGTAGGGCTGTGTTTGGTGGTCTGGTTGGTGCA-GATTTGGAAAAAGAAACAAAG
456 AATTTCTTGTGGTAGGGCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAG
63352318 GAGTGAACGTTTACT-GGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGG
521 GAGTGAACGTTTACTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGG
63352382 AAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACC-AAAAAGTCT
586 AAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCT
63352446 GCCTAAAAAATAGGAGAAGATAATATT-GGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGAT
651 GCCTAAAAAATAGGAGAAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGAT
*
63352510 AGACATGGGTTTTG-GATTTACCCTCTGAAAAATGCTATAAAAAGCCAAATGAGGAAACACTAAA
716 AGACATGGGTTTTGCGATTTACCCTATGAAAAATGCTATAAAAAGCCAAATGAGGAAACACTAAA
* * * * *
63352574 TGACGAACAAAAAAGTGGGAGAGATGTTTTGATGTGAATAAGTTTTTGGCTATGTAAGGGAAAGA
781 CGACGAACAAAAAAGTGGGAGAGATGTTTAGACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGA
*
63352639 AAGTCAAAGGCATTCCTTCTTAGCCATCACAAGATGTAGTGCTGCCAAAGCGTGCACTAGGCAAG
846 AAGTCAAAGGCATTCCTTCTTAGCCATCACAAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAG
* *
63352704 CGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTTCCATTAGTCTTCCTTCGAAAGATTGAATTGAA
911 CGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTTCCATTCGTGTTCCTTCGAAAGATTGAATTGAA
63352769 GTAGTTGAACACAATGT
976 GTAGTTGAACACAATGT
* *
63352786 CAGATAATATTTTGGTTTGGAATTTTATTTCCCTGCCTATGAGTCAAATCTCATAAGGTTGGGAT
1 CAGATACTATTTTGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGAT
*
63352851 TACTTTTAATGAAACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTAATTTACTATTT
66 TACTTTTAATGAAACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTT
*
63352916 CATTTGATTGTTCTTGTTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACA
131 CATTTGATTGTTCTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACA
*
63352981 TAATTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTAAA
196 TAATTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAA
** * *
63353046 GCTTAAAAATGTTAATAAATCATTCTGTCATAGTGATTGATTAGTCTTGAAAAGAATTATAATTC
261 GCTTAAAAATGAAAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTC
* * * *
63353111 TTGTCTTTTGGCTGGGTCAATTGTCTGCACTTAAGTGAACTAATTTGTAATTTAGGATACTAATT
326 TTGCCTTTTGGCTGGGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATT
*
63353176 TAGCACTTTTAGAACATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTGTT
391 TAGCACTTTTAGAACATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTT
* * * * * *
63353241 ACTTTATTGTGGTAGGGCTGTGTTTGTTGGT-TGGGTAGGTGCAGGATATGGAGAAAGAAACAAA
456 AATTTCTTGTGGTAGGGCTGTGTTTGGTGGTCT-GGTTGGTGCAGGATTTGGAAAAAGAAACAAA
63353305 GGAGTGAACGTTTACTGGGGCAAAGAGTTGGACATTTTGCCAAAATGG-TGTTGTGGCAATGTCG
520 GGAGTGAACGTTTACTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCG
*
63353369 GAAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTT
585 GAAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTC
* *
63353434 TGCCTAAAAAATAGGAGAAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAGTTGAGTAGAAGA
650 TGCCTAAAAAATAGGAGAAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGA
* *
63353499 TAAACATGGGTTTTGCGATTTACCCAATGAAAAATGCTATAAAAAGCCAAATGAGGAAACACTAA
715 TAGACATGGGTTTTGCGATTTACCCTATGAAAAATGCTATAAAAAGCCAAATGAGGAAACACTAA
63353564 ACGACGAACAAAAAAGTGGGAGAGATGTTTAGACGTGAATAAGTGTTTGGCTACGTAAGGGAAAG
780 ACGACGAACAAAAAAGTGGGAGAGATGTTTAGACGTGAATAAGTGTTTGGCTACGTAAGGGAAAG
63353629 AAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAA
845 AAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAA
*
63353694 GCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTGA
910 GCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTTCCATTCGTGTTCCTTCGAAAGATTGAATTGA
63353759 AGTAGTTGAACACAATGT
975 AGTAGTTGAACACAATGT
*
63353777 CAGATACTATTTTGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATATGGTTGGGAT
1 CAGATACTATTTTGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGAT
*
63353842 TACTTTTAATGAATCCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTT
66 TACTTTTAATGAAACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTT
63353907 CATTTGATTGTTCTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACA
131 CATTTGATTGTTCTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACA
* *
63353972 TAATTATAAACCGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTCGAACTATTTTGAA
196 TAATTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAA
63354037 GCTTAAAAATGAAAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAG
261 GCTTAAAAATGAAAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAG
63354091 GATATTATTT
Statistics
Matches: 6054, Mismatches: 129, Indels: 81
0.97 0.02 0.01
Matches are distributed among these distances:
980 314 0.05
981 465 0.08
982 1328 0.22
983 1252 0.21
984 222 0.04
985 433 0.07
986 251 0.04
987 332 0.05
988 243 0.04
989 70 0.01
990 589 0.10
991 555 0.09
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (992 bp):
CAGATACTATTTTGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGAT
TACTTTTAATGAAACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTT
CATTTGATTGTTCTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACA
TAATTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAA
GCTTAAAAATGAAAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTC
TTGCCTTTTGGCTGGGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATT
TAGCACTTTTAGAACATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTT
AATTTCTTGTGGTAGGGCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAG
GAGTGAACGTTTACTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGG
AAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCT
GCCTAAAAAATAGGAGAAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGAT
AGACATGGGTTTTGCGATTTACCCTATGAAAAATGCTATAAAAAGCCAAATGAGGAAACACTAAA
CGACGAACAAAAAAGTGGGAGAGATGTTTAGACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGA
AAGTCAAAGGCATTCCTTCTTAGCCATCACAAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAG
CGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTTCCATTCGTGTTCCTTCGAAAGATTGAATTGAA
GTAGTTGAACACAATGT
Found at i:63354959 original size:920 final size:923
Alignment explanation
Indices: 63353164--63355010 Score: 2703
Period size: 920 Copynumber: 2.0 Consensus size: 923
63353154 TTTGTAATTT
* *
63353164 AGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTA
1 AGGATACTAATTTAGCACTTTTAGAACATTGAACAAGAAGATTGGACAGTGCTTAAATATTATTA
* *
63353229 TTTGTTACTGTTACTTTATTGTGGTAGGGCTGTGTTTGTTGGTTGGGTAGGTGCAGGATATGGAG
66 TTTGTTACTGTTAATTTATTGTGGTAGGGCTGTGTTTGTTGGTTGGGTAAGTGCAGGATATGGAG
* **
63353294 AAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGTGTTGT
131 AAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAAATTTTGCCAAAATGGTACTGT
* *
63353359 GGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTAC
196 GGCAATGTAGGAAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAAC-TTACTTGTAC
** * ** * * *
63353424 CAAAAAAGTTTGCCTAAAAAATAGGAGAAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAGTT
260 CAAAAAAGTCCGCCTAAAAAATAGGAGAAAATAATATTGGCATGTTTCAAAAAAGAATTTAAATA
* * *
63353489 GAGTAGAAGATAAACATGGGTTTTGCGATTTACCCAATGAAAAATGCTATAAAAAGCCAAATGAG
325 GAGAAGAAGATAAACATGGGTTTTGCGATTTACCCAAGGAAAAATGCTATAAAAAGCCAAATGAA
* * **
63353554 GAAACACTAAACGACGAACAAAAAAGTGGGAGAGATGTTTAGACGTGAATAAGTGTTTGGCTACG
390 GAAACAATAAACAACGAACAAAAAAGTGGGAGAGATCCTTAGACGTGAAT-AGTGTTTGGCTACG
* *
63353619 TAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGATGTAGTGCTGCCGAAGCGTG
454 TAAGGGAAAGAAAGTCAAAGGCAATCCTTCTTAGCCATAACAAGATGTAGTGCTGCCGAAGCGTG
* * *
63353684 CACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCGAAAG
519 CACTAGGCAAGCGAAAGCTGTTTCCAAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCAAAAG
* *
63353749 ATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATTTTGGTTTGGAATTTTATTTCCCAGCC
584 ACTGAATTGAAGTAGATGAACACAATGTCAGATACTATTTTGGTTTGGAATTTTATTTCCCAGCC
* * * * *
63353814 TATGAGTCAAATCTCATATGGTTGGGATTACTTTTAATGAATCCTTCAACTATTTTTATGAATGC
649 TATGAGCCAAATCTCATAAGGTTGGGATTACTTTCAATGAAACCTTAAACTATTTTTATGAATGC
* * *
63353879 AGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTATTTCTTAATTAGAATGCAAAT
714 AGTGTATATCTAATTTACTTTACAATTTCATTTGATTGGTCTTATTTCTTAATTAAAATGCAAAT
* *
63353944 GATATTTAGACATAGAAGACTGTTCACATAATTATAAACCGATTACTTAAACATGATCAGAAGAA
779 GATATCTAGACATAGAAGACTGTTCACATAATTATAAACCGATTACTTAAACAAGATCAGAAGAA
* *
63354009 TGAGTTTATGTTTTCGAACTATTTTGAAGCTTAAAAATGAAAATAAATCATTCTGTCATAGTGAA
844 TGAGTTTATGTTTTCGAACTATTTTGAAGCTTAAAAATGAAAATAAACCATTCTATCATAGTGAA
*
63354074 TGATTAGTCTTGAAA
909 TGATAAGTCTTGAAA
* * **
63354089 AGGATATTATTTTAGCACTTTTAGAACATTGAATGAGAAGATTGGACAGTGCTTAAATATTATTA
1 AGGATACTAATTTAGCACTTTTAGAACATTGAACAAGAAGATTGGACAGTGCTTAAATATTATTA
* * *
63354154 TTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGTTGGTTGGGTAAGTGCAGGATGTGGAG
66 TTTGTTACTGTTAATTTATTGTGGTAGGGCTGTGTTTGTTGGTTGGGTAAGTGCAGGATATGGAG
*
63354219 AAAGAAACAAAGGAGTGAACGTTTGCTGGGGCAAAGAGTTGGAAATTTTGCCAAAATGGATACTG
131 AAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAAATTTTGCCAAAATGG-TACTG
* * *
63354284 TGGCAGTGTAGGGATGACTGAGTTAACACTCAACGCATGCCAAGTTT-AGCCCAAC-TACATTGT
195 TGGCAATGTAGGAAAGACTGAGTTAACACTCAACGCATGCCAA-TTTCAGCCCAACTTAC-TTGT
* *
63354347 ACCAGAAACA-TCCGGCTAAAAAATAGGAGAAAATAATATTGGCATG-TTCAAAAAAGAATTTAA
258 ACCA-AAAAAGTCCGCCTAAAAAATAGGAGAAAATAATATTGGCATGTTTCAAAAAAGAATTTAA
* * * * *
63354410 ATAGAGAAGAAGATAAACATAGGTTTTTG-GATTTTCCCGAGGCGAAAA-GCTGTAAAAAGCCAA
322 ATAGAGAAGAAGATAAACAT-GGGTTTTGCGATTTACCCAAGG-AAAAATGCTATAAAAAGCCAA
* * *
63354473 TTGAAGAAACAATAAACAATGAACAAAAAAGTGGGAGAGATCCTTAGGC-T--A-AGTGTTTTGG
385 ATGAAGAAACAATAAACAACGAACAAAAAAGTGGGAGAGATCCTTAGACGTGAATAGTG-TTTGG
* ** * *
63354534 CTATGTAAGGGAAAGAAAGTTGAAGGCAATCCTTCTTAGCCATAACAAGATGTTGTGCTGCCGTA
449 CTACGTAAGGGAAAGAAAGTCAAAGGCAATCCTTCTTAGCCATAACAAGATGTAGTGCTGCCGAA
* * *
63354599 GTGTGGACTGGGCAAGCGAAAGCTGTTTCCAAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTC
514 GCGTGCACTAGGCAAGCGAAAGCTGTTTCCAAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTC
*
63354664 AAAAGACTGAATTGAAGTAGATGAACACAATGTTAGATGA-TATTTTGGTTTGGAATTTTATTTC
579 AAAAGACTGAATTGAAGTAGATGAACACAATGTCAGAT-ACTATTTTGGTTTGGAATTTTATTTC
*
63354728 CCAGCCTATGAGCCAAATCTCATAAGGTTGGGATTTCTTTCAATGAAACCTTAAACTATTTTTAT
643 CCAGCCTATGAGCCAAATCTCATAAGGTTGGGATTACTTTCAATGAAACCTTAAACTATTTTTAT
*
63354793 -AGATGTAG-GATATATCTAATTTACTTTACAATTTCATTTGATTGGTCTTATTTCTTAATTAAA
708 GA-ATGCAGTG-TATATCTAATTTACTTTACAATTTCATTTGATTGGTCTTATTTCTTAATTAAA
* ** * * *
63354856 ATGCAAATGATCTCTAGACATAGAAGACTGTTTGCATACTTGTAAACTGATTACTTAAACAAGAT
771 ATGCAAATGATATCTAGACATAGAAGACTGTTCACATAATTATAAACCGATTACTTAAACAAGAT
* * * * *
63354921 CCGAAGAATGAGTTTATGTTTTTGAACTTTTTTGAAGCTTATAAATGAAAATAAACCATTTTATC
836 CAGAAGAATGAGTTTATGTTTTCGAACTATTTTGAAGCTTAAAAATGAAAATAAACCATTCTATC
*
63354986 ATAGTGAATGATAATTCTTGAAA
901 ATAGTGAATGATAAGTCTTGAAA
63355009 AG
1 AG
63355011 AGTTATAATT
Statistics
Matches: 824, Mismatches: 88, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
919 6 0.01
920 433 0.53
921 2 0.00
923 1 0.00
924 101 0.12
925 224 0.27
926 54 0.07
927 3 0.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.33
Consensus pattern (923 bp):
AGGATACTAATTTAGCACTTTTAGAACATTGAACAAGAAGATTGGACAGTGCTTAAATATTATTA
TTTGTTACTGTTAATTTATTGTGGTAGGGCTGTGTTTGTTGGTTGGGTAAGTGCAGGATATGGAG
AAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGAAATTTTGCCAAAATGGTACTGT
GGCAATGTAGGAAAGACTGAGTTAACACTCAACGCATGCCAATTTCAGCCCAACTTACTTGTACC
AAAAAAGTCCGCCTAAAAAATAGGAGAAAATAATATTGGCATGTTTCAAAAAAGAATTTAAATAG
AGAAGAAGATAAACATGGGTTTTGCGATTTACCCAAGGAAAAATGCTATAAAAAGCCAAATGAAG
AAACAATAAACAACGAACAAAAAAGTGGGAGAGATCCTTAGACGTGAATAGTGTTTGGCTACGTA
AGGGAAAGAAAGTCAAAGGCAATCCTTCTTAGCCATAACAAGATGTAGTGCTGCCGAAGCGTGCA
CTAGGCAAGCGAAAGCTGTTTCCAAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCAAAAGAC
TGAATTGAAGTAGATGAACACAATGTCAGATACTATTTTGGTTTGGAATTTTATTTCCCAGCCTA
TGAGCCAAATCTCATAAGGTTGGGATTACTTTCAATGAAACCTTAAACTATTTTTATGAATGCAG
TGTATATCTAATTTACTTTACAATTTCATTTGATTGGTCTTATTTCTTAATTAAAATGCAAATGA
TATCTAGACATAGAAGACTGTTCACATAATTATAAACCGATTACTTAAACAAGATCAGAAGAATG
AGTTTATGTTTTCGAACTATTTTGAAGCTTAAAAATGAAAATAAACCATTCTATCATAGTGAATG
ATAAGTCTTGAAA
Found at i:63356036 original size:985 final size:979
Alignment explanation
Indices: 63354089--63356742 Score: 3663
Period size: 985 Copynumber: 2.7 Consensus size: 979
63354079 AGTCTTGAAA
* *
63354089 AGGATATTATTTTAGCACTTTTAGAACATTGAATGAGAAGATTGGACAGTGCTTAAATATTATTA
1 AGGATATTATTTTAGCACTTTTAGAACATTGCATAAGAAGATTGGACAGTGCTTAAATATTATTA
* * *
63354154 TTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGTTGGTTGGGTAAGTGCAGGATGTGGAG
66 TTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGTTGGGTAGGTGAAGGATGTGGAG
* *
63354219 AAAGAAACAAAGGAGTGAACGTTTGCTGGGGCAAAGAGTTGGAAATTTTGCCAAAATGGATACTG
131 AAAGAAACAAAGGAGTGAACGTTTGCTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATGCTG
* * *
63354284 TGGCAGTGTAGGGATGACTGAGTTAACACTCAACGCATGCCAAGTTTAGCCCAACTACA-TTGTA
196 TGGCAATGTAGGGAAGACTGAGTTAACACTCAACGCATGCCAAGTTCAGCCCAACTACACTTGTA
* * * *
63354348 CCAGAAACATCCGGCTAAAAAATAGGAGAAAATAATATTGGCATGTTCAAAAAAGAATTTAAATA
261 CCAGAAAAATCCGACTAAAAAATAGGAGAAAATAATATTGG-TTGTTGAAAAAAGAATTTAAATA
* * * ** * * *
63354413 GAGAAGAAGATAAACATAGGTTTTTGGATTTTCCCGAGGCGAAAAGCTGTAAAAAGCCAATTGAA
325 GAG-AGAAGATAAACATGGGTTTTTGGATTTACCCAAGGAAAAAAGCTATAAAAAG-CAAATGAG
* * * * *
63354478 GAAACAATAAACAATGAACAAAAAAGTGGGAGAGATCCTTAGGCTAAGTGTTTTGGCTATGTAAG
388 GAAACACTAAACGATGAACAAAAAAGTGGGAGAGAT-TTTGGGCTAAG-GGTTTGGCTATGTAAG
* * * *
63354543 GGAAAGAAAGTTGAAGGCAATCCTTCTTAGCCATAACAAGATGTTGTGCTGCCGTAGTGTGGACT
451 GGAAAGAAAGTT-AAGGTAGTCCTTCTTAGCCATCACAAGATGTTGTGCTGCCGAAGTGTGGACT
63354608 GGGCAAGCGAAAGCTGTTTCCAAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCAAAAGACTG
515 GGGCAAGCGAAAGCTGTTTCCAAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCAAAAGACTG
*
63354673 AATTGAAGTAGATGAACACAATGTTAGATGATATTTTGGTTTGGAATTTTATTTCCCAGCCTATG
580 AATTGAAGTAGTTGAACACAATGTTAGAT-ATATTTTGGTTTGGAATTTTATTTCCCAGCCTATG
* * *
63354738 AGCCAAATCTCATAAGGTTGGGATTTCTTTCAATGAAACCTTAAACTATTTTTATAGATGTAGGA
644 AGTCAAATCTCATAAGGTT-GGATTACTTTCAATGAAACCTTAAACTATTTTTATAGATGCAGGA
63354803 TATATCTAATTTACTTTACAATTTCATTTGATTGGTCTTATTTCTTAATTAAAATGCAAATGATC
708 TATATCTAATTTACTTTACAATTTCATTTGATTGGTCTTATTTCTTAATTAAAATGCAAATGATC
* * *
63354868 TCTAGACATAGAAGACTGTTTGCATACTTGTAAACTGATTACTTAAACAAGATCCGAAGAATGAG
773 TCTAGACATAGAAGACGGTTCGCATACTTATAAACTGATTACTTAAACAAGATCCGAAGAATGAG
* * *
63354933 TTTATGTTTTTGAACTTTTTTGAAGCTTATAAATGAAAATAAACCATTTTATCATAGTGAATGAT
838 TTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATAAACCATTCTATCATAGTGAATGAT
* * *
63354998 AATTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGGGTCAATTGTCTGTACTTAAGTGAATT
903 AATTATTGAAAAGAGTTATAACTCATGCCTTTAGGCTGGGTCAATTGTCTGTACTTAAGTGAACT
63355063 TAGTTGCATTTT
968 TAGTTGCATTTT
* *
63355075 AGGATATTATTGTAGCACTTTTAGAACATTGCATAAGAAGATTGGACAATGCTTAAATATTATTA
1 AGGATATTATTTTAGCACTTTTAGAACATTGCATAAGAAGATTGGACAGTGCTTAAATATTATTA
* * *
63355140 TTTATTACTTTTACTTTCTTGTGGTAGGGCTGTGTTTGGTGGTTGGGTAGGTGTAGGATGTGGAA
66 TTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGTTGGGTAGGTGAAGGATGTGG--
* * * * *
63355205 AAACAAAAAAAAAAGG-GCTGAACGTTTGCTGGGGTAAAGAGTTGGACATTTTGCGAAAATGGAT
129 AGA-AAGAAACAAAGGAG-TGAACGTTTGCTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGAT
* * *
63355269 GCTGTGGCAACGTAGGGAAGATTGAGTTAACACTCAACGCATGCCAAGTTCAGCCCAACAACACT
192 GCTGTGGCAATGTAGGGAAGACTGAGTTAACACTCAACGCATGCCAAGTTCAGCCCAACTACACT
* * *
63355334 TGTACCAGAAAAATCCGAATAAAAAATAGGAGAAAATAATATTGAGTTGTTGAAACAGGAATTTA
257 TGTACCAGAAAAATCCGACTAAAAAATAGGAGAAAATAATATTG-GTTGTTGAAAAAAGAATTTA
* * * * * *
63355399 AATAGAAGAGAAGTTAATA-ATGGGTTTTTGGATTTGCCCAAAGATAAAGGCTATAAAAAGGAAA
321 AATAG-AGAGAAGATAA-ACATGGGTTTTTGGATTTACCCAAGGAAAAAAGCTATAAAAAGCAAA
* * *
63355463 CCGAGGAAACACTTAACGATGAACAAAAAAGTGGGAGAGATTTTGGGCTAAGGGTTTGGATATGT
384 -TGAGGAAACACTAAACGATGAACAAAAAAGTGGGAGAGATTTTGGGCTAAGGGTTTGGCTATGT
*
63355528 AAGGGAAAGAAAGTTACAGGTAGTCCTTCTTAGCCATCACAAGATGTTGTGCTGCCGAAGTGTAG
448 AAGGGAAAGAAAGTTA-AGGTAGTCCTTCTTAGCCATCACAAGATGTTGTGCTGCCGAAGTGTGG
* * * * * **
63355593 -CTGGACAAGCGAAAGTTGATTCTAAAAGTTCATTTGTTATTTCCATTAGTGTTCCTTTGAAAGA
512 ACTGGGCAAGCGAAAGCTGTTTCCAAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCAAAAGA
* * * *
63355657 CTAAATTGAAGTAGTTGAACA-AAAGTCAGATATTATTTTGGTTTGGAATTTTATTTCCCATCCT
577 CTGAATTGAAGTAGTTGAACACAATGTTAGATA-TATTTTGGTTTGGAATTTTATTTCCCAGCCT
* *
63355721 ATGAGTCAAATCTCATAAGGTTGAGATTACTTTCAATGAAATCTTAAACTATTTTTAT-GGTGCA
641 ATGAGTCAAATCTCATAAGGTTG-GATTACTTTCAATGAAACCTTAAACTATTTTTATAGATGCA
* *
63355785 GTATATATCTAATTTACTTTACAATTTCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATG
705 GGATATATCTAATTTACTTTACAATTTCATTTGATTGGTCTTATTTCTTAATTAAAATGCAAATG
* * * *
63355850 ATCTTTAGACATAGAAGACGGTTCGCATACTTATAAATTGATTACTTAAACATGATCTGAAGAAT
770 ATCTCTAGACATAGAAGACGGTTCGCATACTTATAAACTGATTACTTAAACAAGATCCGAAGAAT
* * *
63355915 GAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATTAAAATAAGA-TATTCTGTCATAGTGAA
835 GAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATAA-ACCATTCTATCATAGTGAA
* * *
63355979 TGATAATTATTGAAAAGAGTTATAACTCATGCCTTTAGGTTGGGTTAATTTTCTGTACTTAAGTG
899 TGATAATTATTGAAAAGAGTTATAACTCATGCCTTTAGGCTGGGTCAATTGTCTGTACTTAAGTG
63356044 AACTTAGTTGCATTTT
964 AACTTAGTTGCATTTT
* * *
63356060 AGGATATTATTTTAGCACCTTTAGAACACTGCATAAGAAGATTGGATAGTGCTTAAATATTATTA
1 AGGATATTATTTTAGCACTTTTAGAACATTGCATAAGAAGATTGGACAGTGCTTAAATATTATTA
* * * *
63356125 TTTGTTACTTTTAATTTTTTGTGGTAGGGCTGTGTTTGGTGCTTTTGGTAGGTGAAGGATATGGA
66 TTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTG-GTTGGGTAGGTGAAGGATGTGGA
* *
63356190 GAAAGAAACAAAGGAGTGAACGTTTGCTGGGGCAAAGAGTTGGACATTTTCCCAAAATGGATGTT
130 GAAAGAAACAAAGGAGTGAACGTTTGCTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATGCT
* * * ** *
63356255 GTGGCAATGTCGGGAAGACTGAGTTAACACCCAACGCATGTC-AGTTTCAGCCCAACTTTACTTT
195 GTGGCAATGTAGGGAAGACTGAGTTAACACTCAACGCATGCCAAG-TTCAGCCCAACTACACTTG
* * ** *
63356319 TACCAGAAAAATCTGCCTAAAAAATAGGAGATGATAATATTGGGTTGTTGAAAAAATAATTTAAA
259 TACCAGAAAAATCCGACTAAAAAATAGGAGAAAATAATATT-GGTTGTTGAAAAAAGAATTTAAA
* * * *
63356384 TAGCGGAGAAGATAAACATGGGTTTTGGGATTTACCCTAGGAAAAAAACTATAAAAAGCCAAATG
323 TAG-AGAGAAGATAAACATGGGTTTTTGGATTTACCCAAGGAAAAAAGCTATAAAAAG-CAAATG
* * * * * *
63356449 AGGAAACACTAAATGACGAACAAAAAAGTGGGAGAGACCCTTAGACGTGAATAAGGGTTTGGCTG
386 AGGAAACACTAAACGATGAACAAAAAAGTGGGAGAGA--TTTTG--G-G-CTAAGGGTTTGGCTA
* * * * * *
63356514 CGTAAGGGAAAGAAAGTCAAAGGTAGTTCTTCTTAGCCATCACTAGATGCTGTGCTGCTGAAGTG
445 TGTAAGGGAAAGAAAGT-TAAGGTAGTCCTTCTTAGCCATCACAAGATGTTGTGCTGCCGAAGTG
* * *
63356579 TGGACTGGGCACGCGAAAGCTGTTTCCCAAAGTTCTTTTGTTA-TTCCATTTGTGTTCCTTCAAA
509 TGGACTGGGCAAGCGAAAGCTGTTTCCAAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCAAA
* * *
63356643 AGATTGAATTGAAGTAGTTGAACACAATTTTAGATAATATTTTGGTTTGGAATTTTATTTCTCAG
574 AGACTGAATTGAAGTAGTTGAACACAATGTTAGAT-ATATTTTGGTTTGGAATTTTATTTCCCAG
* * * *
63356708 CCCATGA-TCCAAATCTAATAATGTTGGGTTACTTT
638 CCTATGAGT-CAAATCTCATAAGGTTGGATTACTTT
63356743 GTAACACCCC
Statistics
Matches: 1462, Mismatches: 176, Indels: 57
0.86 0.10 0.03
Matches are distributed among these distances:
982 3 0.00
983 243 0.17
984 7 0.00
985 359 0.25
986 229 0.16
987 78 0.05
988 73 0.05
989 240 0.16
990 225 0.15
991 5 0.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (979 bp):
AGGATATTATTTTAGCACTTTTAGAACATTGCATAAGAAGATTGGACAGTGCTTAAATATTATTA
TTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGTTGGGTAGGTGAAGGATGTGGAG
AAAGAAACAAAGGAGTGAACGTTTGCTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATGCTG
TGGCAATGTAGGGAAGACTGAGTTAACACTCAACGCATGCCAAGTTCAGCCCAACTACACTTGTA
CCAGAAAAATCCGACTAAAAAATAGGAGAAAATAATATTGGTTGTTGAAAAAAGAATTTAAATAG
AGAGAAGATAAACATGGGTTTTTGGATTTACCCAAGGAAAAAAGCTATAAAAAGCAAATGAGGAA
ACACTAAACGATGAACAAAAAAGTGGGAGAGATTTTGGGCTAAGGGTTTGGCTATGTAAGGGAAA
GAAAGTTAAGGTAGTCCTTCTTAGCCATCACAAGATGTTGTGCTGCCGAAGTGTGGACTGGGCAA
GCGAAAGCTGTTTCCAAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCAAAAGACTGAATTGA
AGTAGTTGAACACAATGTTAGATATATTTTGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAA
TCTCATAAGGTTGGATTACTTTCAATGAAACCTTAAACTATTTTTATAGATGCAGGATATATCTA
ATTTACTTTACAATTTCATTTGATTGGTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACA
TAGAAGACGGTTCGCATACTTATAAACTGATTACTTAAACAAGATCCGAAGAATGAGTTTATGTT
TTTGAACTATTTTGAAGCTTAAAAATGAAAATAAACCATTCTATCATAGTGAATGATAATTATTG
AAAAGAGTTATAACTCATGCCTTTAGGCTGGGTCAATTGTCTGTACTTAAGTGAACTTAGTTGCA
TTTT
Found at i:63359971 original size:2 final size:2
Alignment explanation
Indices: 63359959--63359991 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
63359949 ACAATACTTT
*
63359959 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
63359992 TCCTATCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Done.