Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 204 of 325
Found at i:63360036 original size:15 final size:15
Alignment explanation
Indices: 63359999--63360027 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
63359989 TATTCCTATC
63359999 TAATAATAATAATTA
1 TAATAATAATAATTA
63360014 TAATAATAATAATT
1 TAATAATAATAATT
63360028 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:63362509 original size:972 final size:971
Alignment explanation
Indices: 63360383--63362879 Score: 3498
Period size: 972 Copynumber: 2.6 Consensus size: 971
63360373 TTATTTTTAT
* * * * *
63360383 GGATGCAATAAATATCTCATTTACATTACTGTTTCATTTGTTTGTTCTTATTTCTTAATTAAAAT
1 GGATGCAGTATATATCTAATTTACTTTACTGTTTCATTTGATTGTTCTTATTTCTTAATTAAAAT
* * *
63360448 GCAAATGATCTCTATACAGAGAAGACTATTCGCATACTTATAAACTGATTACTTAAACATGATCA
66 GCAAATGATCTCTAGACATAGAAGACTGTTCGCATACTTATAAACTGATTACTTAAACATGATCA
* * * * *
63360513 CAAGG-TTAAGTTTATGTTTTTGAA-TGATTTTGAAGCTTAAAAATCAAAATAAACCTTTCTGTC
131 -GAGGAATAAGGTTATGTTTTTGAACT-ATTTTGAAGCTTAAAAATGAAAATAAACCATTCTGTC
* * *
63360576 ATAGTGAATGATAAGTCTTAAAAAGAGTTATAATTCATGTCTTTCA-GCTGGGTCAATTGTCTGT
194 ATAGTGAATGATAACTCTT-GAAAGAGTTATAATTCATGCCTTT-AGGCTGGGTCAATTGTCTGT
* * *
63360640 ACTTAAGTGAACTTAGTTGCA-ATTTAGCATATTATTTTAGCACTTTTAGAATATTGCAAAAGAA
257 ACTTAAGTGAACTTAGTTGCATA-TTAGGATATTATTTTAGCACTTTTAGAACATTGCATAAGAA
* * * *
63360704 GT-TTGGACAATGCTTAAATATTATTATTTGCTACTTTTAATTTCTTGTGGCAGGGCTGTGTTTG
321 -TATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTG
* *
63360768 GTGGTTTGGTAGGTGCAGGATGTGGAGAAAAAAACAAAGGAGTGAACGTTTGCTGGGGAAAGAGT
385 GTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAAAGTTTGCTGGGGAAAGAGT
* * * * *
63360833 TAGAGATTTTGCCAAAATGGATGTTGTGGCAATGTTAGGAAGACTGAGTTAACACTCAACGCATG
450 TGGACATTTTG-CAAAATGGATGATGTGGCAATGTCAGAAAGACTGAGTTAACACTCAACGCATG
63360898 CCAGTTTCAGCCCAACTTTACTTGTACCCA-AAAAATCTGCCTAAAAATAGGAGAAGATAATCAT
514 CCAGTTTCAGCCCAACTTTACTTGTA-CCAGAAAAATCTGCCTAAAAATAGGAGAAGATAATCAT
* * *
63360962 TGGTCGTTGAAAAAAGAATTTAAATAGCGGAGAAGATAAACATGGGTTTCTGGATTTACCCTAGA
578 TGGTCGTTGAAAAAAGAATTTAAAGAGAGGAGAAGATAAAAATGGGTTTCTGGATTTACCCTAGA
* * *
63361027 AAAAAAAATCTATAAAAAGCCAACTAAGGAAACACTAAATGACAAACAAAAAAGTTGGGGAGATC
643 AAAAAAAATCTATAAAAAGCCAAATAAGGAAACACTAAACGACAAACAAAAAAGTGGGGGAGATC
* * ** *
63361092 CTTAGGCGTGACTAAGGGTTTGGCTACGTAAGGGAAAAAAAGTTTAAGGCAGTTTTTCTTAGCCA
708 CTTAGGCGTGAATAAGGGTTTGGCTACGTAAAGGAAAAAAAGTCGAAGGCAGTCTTTCTTAGCCA
* * *
63361157 TCACAAGATGTTGTGCTGCCGAAGTGTGGACTGGGCAAGCGAAACCTATTTCCCAAAGTTCTTTT
773 TCACAAGATGTTGTGCTGCCGAAGTGTGAACTAGGCAAGCGAAACCTATTGCCCAAAGTTCTTTT
* * * * *
63361222 GTTATTTCCATTAGTGTTCCTTACAAAGATTGAATTGAAGTAGTTGAGCACAATGTCAGATAATA
838 GATATTTCCATTACTGTTCCTTACAAAGATTGAATTGAAATAGTTGAACACAATGTCAAATAATA
* *
63361287 TTTTGGTTTGAAATTTTATTTCCAAGCCCATGAGCCAAATCTCATGATGTTGGGATTAATTTCAA
903 TTTTGGTTTGAAATTTTATTTCCAAGCCCATGAGCCAAATCTCATAAAGTTGGGATTAATTTCAA
63361352 TGAA
968 TGAA
* * *
63361356 GGATGCAGTATATATGTAATTTACTTTACTGTTTCTTTTGATTGTTTTTATTTCTTAATTAAAAT
1 GGATGCAGTATATATCTAATTTACTTTACTGTTTCATTTGATTGTTCTTATTTCTTAATTAAAAT
* * *
63361421 GCAAATGATCTCTAGACATAGAAGACTGTTCGCATACTTATAAACTAATTACTTAAACTTGATTA
66 GCAAATGATCTCTAGACATAGAAGACTGTTCGCATACTTATAAACTGATTACTTAAACATGATCA
* * * * *
63361486 GAAGAATGA-GTTCATGTTTTTGAACTATTTTCAAGCTTAAAAATG-AAATAAACGATTCTGTTA
131 GAGGAATAAGGTT-ATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATAAACCATTCTGTCA
* * * *
63361549 TAGTGAATGATAACTATTGAAACGAGTTGTAATTCATGCCTTTAGGCTGGGTCAACTGTCTATAC
195 TAGTGAATGATAACTCTTGAAA-GAGTTATAATTCATGCCTTTAGGCTGGGTCAATTGTCTGTAC
*
63361614 TTAAGTGAACTTAGTTGCATATTAGGATATTATTTTAGCAGTTTTAGAACATTGCATAAGAATAT
259 TTAAGTGAACTTAGTTGCATATTAGGATATTATTTTAGCACTTTTAGAACATTGCATAAGAATAT
* * * * *
63361679 TGGGTAGTGCTTAAATATTATTATTTATTTCTATTAATTTCTTGTGGTAGGGCTGTGTTTGGGGG
324 TGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGG
* * * * * *
63361744 TTTGATAGGTGCAAGATGTGGAGAAAGAAACAAAGGACTGAATGTTTGTTGGGGCAAGGAGTTGG
389 TTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAAAGTTTGCTGGGG-AAAGAGTTGG
* * * * * *
63361809 ACATTTTGCAATAATGGATGCTATGGAAATGTCAGAAAGATTGAGTCAACGCTCAACGCATGCCA
453 ACATTTTGCAA-AATGGATGATGTGGCAATGTCAGAAAGACTGAGTTAACACTCAACGCATGCCA
* *
63361874 GTTTCAGCCCAACTTTACTTGTACGAGAAAAATTTGCCTAAAAAATAGGAGAAGATAAT-ATTGG
517 GTTTCAGCCCAACTTTACTTGTACCAGAAAAATCTGCCT-AAAAATAGGAGAAGATAATCATT-G
* * **
63361938 GTTGTTGAGAAAAGAATTTAAAGAGAGGAGAAGATAAAAATGGGTTT-TGGGATTTACCCT-GGG
580 GTCGTTGAAAAAAGAATTTAAAGAGAGGAGAAGATAAAAATGGGTTTCT-GGATTTACCCTAGAA
* *
63362001 AAAAAAA-CTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGGGAGATCC
644 AAAAAAATCTATAAAAAGCCAAATAAGGAAACACTAAACGACAAACAAAAAAGTGGGGGAGATCC
* *
63362065 TTAGGCGTGAATAATGGTTTGGCTACGTAAAGGAAAGAAAGTCGAAGGCAGTCCTTT-TTAGCCA
709 TTAGGCGTGAATAAGGGTTTGGCTACGTAAAGGAAAAAAAGTCGAAGGCAGT-CTTTCTTAGCCA
* * * * *
63362129 TCAGAAGATGTTGTGCTGCCGAATTGT-AACTAGGCAAGTGAAAGCTGTTGCCCAAAGTTCTTTT
773 TCACAAGATGTTGTGCTGCCGAAGTGTGAACTAGGCAAGCGAAACCTATTGCCCAAAGTTCTTTT
*
63362193 GATATTTCCATTACTGTT-CTTTCAAAAGATTGAATTGAAATAGTTGAACACAATGTCAAATAAT
838 GATATTTCCATTACTGTTCCTTAC-AAAGATTGAATTGAAATAGTTGAACACAATGTCAAATAAT
* * *
63362257 ATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCTAAATCTCATAAAGTTGGGATTAATTTCA
902 ATTTTGGTTTGAAATTTTATTTCCAAGCCCATGAGCCAAATCTCATAAAGTTGGGATTAATTTCA
*
63362322 ATGGA
967 ATGAA
* *
63362327 GGATGTAGTATATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTATTTCTTAATTAAAAT
1 GGATGCAGTATATATCTAATTTACTTTACTGTTTCATTTGATTGTTCTTATTTCTTAATTAAAAT
* **
63362392 GCAAATGATCTCTAGACATAGGAA-ACTGTTCACATACTTATAAGTTGATTACTTAAACATGATC
66 GCAAATGATCTCTAGACATA-GAAGACTGTTCGCATACTTATAAACTGATTACTTAAACATGATC
*
63362456 AGAGGAATAAGGTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATAAACCATTCTATCA
130 AGAGGAATAAGGTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATAAACCATTCTGTCA
* *
63362521 TAGTGAATGATAACTCTTGGAAAGAGTTATACTTCATGCCTTTAGGCTGGGTCAATTATCTGTAC
195 TAGTGAATGATAACTCTT-GAAAGAGTTATAATTCATGCCTTTAGGCTGGGTCAATTGTCTGTAC
* * * *
63362586 TTAACTGAACTCAGTTGCATTTTAGGATATTATTTTAGCACTTTTAGAACATTGCATAAGAAGAT
259 TTAAGTGAACTTAGTTGCATATTAGGATATTATTTTAGCACTTTTAGAACATTGCATAAGAATAT
* * ** *
63362651 TAGATAGTTCTTAGTTATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGTTGTGTTTGGTGG
324 TGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGG
* * * *
63362716 TTTGGTAGGTGTAGGATGTGGAGAAAGAAAAAAAGGAGTGAAAGTTTGCTAGGGAAAAGAGTTGT
389 TTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAAAGTTTGCT-GGGGAAAGAGTTGG
* * **
63362781 ACATTTTTCCAAAATGGATGATGTGGCAATG-CTGGTTAGACTGAGTTAACACTCAACGCATGCC
453 ACA-TTTTGCAAAATGGATGATGTGGCAATGTC-AGAAAGACTGAGTTAACACTCAACGCATGCC
* *
63362845 AGTTTTAGCCCAGCTTTACTTGTACCAGAAAAATC
516 AGTTTCAGCCCAACTTTACTTGTACCAGAAAAATC
63362880 CAGGTAAAAA
Statistics
Matches: 1338, Mismatches: 164, Indels: 45
0.86 0.11 0.03
Matches are distributed among these distances:
970 4 0.00
971 307 0.23
972 683 0.51
973 270 0.20
974 74 0.06
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (971 bp):
GGATGCAGTATATATCTAATTTACTTTACTGTTTCATTTGATTGTTCTTATTTCTTAATTAAAAT
GCAAATGATCTCTAGACATAGAAGACTGTTCGCATACTTATAAACTGATTACTTAAACATGATCA
GAGGAATAAGGTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATAAACCATTCTGTCAT
AGTGAATGATAACTCTTGAAAGAGTTATAATTCATGCCTTTAGGCTGGGTCAATTGTCTGTACTT
AAGTGAACTTAGTTGCATATTAGGATATTATTTTAGCACTTTTAGAACATTGCATAAGAATATTG
GATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGTT
TGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAAAGTTTGCTGGGGAAAGAGTTGGACA
TTTTGCAAAATGGATGATGTGGCAATGTCAGAAAGACTGAGTTAACACTCAACGCATGCCAGTTT
CAGCCCAACTTTACTTGTACCAGAAAAATCTGCCTAAAAATAGGAGAAGATAATCATTGGTCGTT
GAAAAAAGAATTTAAAGAGAGGAGAAGATAAAAATGGGTTTCTGGATTTACCCTAGAAAAAAAAA
TCTATAAAAAGCCAAATAAGGAAACACTAAACGACAAACAAAAAAGTGGGGGAGATCCTTAGGCG
TGAATAAGGGTTTGGCTACGTAAAGGAAAAAAAGTCGAAGGCAGTCTTTCTTAGCCATCACAAGA
TGTTGTGCTGCCGAAGTGTGAACTAGGCAAGCGAAACCTATTGCCCAAAGTTCTTTTGATATTTC
CATTACTGTTCCTTACAAAGATTGAATTGAAATAGTTGAACACAATGTCAAATAATATTTTGGTT
TGAAATTTTATTTCCAAGCCCATGAGCCAAATCTCATAAAGTTGGGATTAATTTCAATGAA
Found at i:63363811 original size:43 final size:43
Alignment explanation
Indices: 63363654--63363812 Score: 110
Period size: 43 Copynumber: 3.7 Consensus size: 43
63363644 TATGTGTTAT
* * * *
63363654 CATGTAAGACCATGTCTGAGACGTTGGCATCGACT-TATGATTTA
1 CATGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGA-TTA
** * * * * * *
63363698 TGTGTAAGACCATGCCTGGGACATTAGAATAG-TATTTGATTT
1 CATGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
* * *
63363740 CGTGTAAGA-CAC-TGCTTGGGGCAATGGCATCGATATTTGATTA
1 CATGTAAGACCACGT-C-TGGGACATTGGCATCGATATTTGATTA
*
63363783 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CATGTAAGACCACGTCTGGGACATTGGCAT
63363813 TGTATGAGAT
Statistics
Matches: 86, Mismatches: 23, Indels: 13
0.70 0.19 0.11
Matches are distributed among these distances:
41 3 0.03
42 22 0.26
43 32 0.37
44 28 0.33
45 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
Found at i:63364576 original size:24 final size:23
Alignment explanation
Indices: 63364549--63364593 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
63364539 TGAAACCTAT
* *
63364549 GTTTTGGTATGATTTTAGTTTAGG
1 GTTTGGGTATG-TTTCAGTTTAGG
63364573 GTTTGGGTATGTTTCAGTTTA
1 GTTTGGGTATGTTTCAGTTTA
63364594 TATATTGAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.16, C:0.02, G:0.29, T:0.53
Consensus pattern (23 bp):
GTTTGGGTATGTTTCAGTTTAGG
Found at i:63368161 original size:27 final size:27
Alignment explanation
Indices: 63368145--63368395 Score: 303
Period size: 27 Copynumber: 9.3 Consensus size: 27
63368135 CGACTTGTAA
63368145 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
63368172 AATTACCATTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
**
63368199 AATTACTGTTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
*
63368226 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
63368253 AATTACTATTTTATCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
*** *
63368280 AATTATTGTTTTCCCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
63368307 AATTACTATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAG
*
63368334 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* * *
63368361 AATTACCGTTTTACCTTCAATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
63368388 AATTACCA
1 AATTACCA
63368396 AAATACCCTT
Statistics
Matches: 197, Mismatches: 19, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
26 4 0.02
27 189 0.96
28 4 0.02
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAG
Found at i:63368402 original size:27 final size:27
Alignment explanation
Indices: 63368156--63368484 Score: 102
Period size: 27 Copynumber: 12.2 Consensus size: 27
63368146 ATTACCATTT
* ***
63368156 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* *****
63368183 TACCCTCAGTTTACAGAATTACTGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* ****
63368210 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * ***
63368237 TACCCTCAGTTTACAGAATTACTATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * ******
63368264 TATCCTCGATTTACAGAATTATTGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * * ***
63368291 TCCCCTCAGTTTACAGAATTACTATTT
1 TACCCTCAATTTACAGAATTACCAAAA
* * ****
63368318 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
* ****
63368345 TACCCTCAGTTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCAAAA
*
63368372 TACCTTCAATTTACAGAATTACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
*** * * *
63368399 TACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
** * *
63368426 TACCC-CTAATTTGTAAAATTACTAAAA
1 TACCCTC-AATTTACAGAATTACCAAAA
*** *
63368453 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCAATTTACAGAATTACCAAAA
63368480 TACCC
1 TACCC
63368485 CTGGTTTGTA
Statistics
Matches: 244, Mismatches: 56, Indels: 4
0.80 0.18 0.01
Matches are distributed among these distances:
27 244 1.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (27 bp):
TACCCTCAATTTACAGAATTACCAAAA
Found at i:63368411 original size:54 final size:54
Alignment explanation
Indices: 63368145--63368394 Score: 392
Period size: 54 Copynumber: 4.6 Consensus size: 54
63368135 CGACTTGTAA
* *
63368145 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
*
63368199 AATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* ** *
63368253 AATTACTATTTTATCCTCGATTTACAGAATTATTGTTTTCCCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
*
63368307 AATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
** * *
63368361 AATTACCGTTTTACCTTCAATTTACAGAATTACC
1 AATTACTATTTTACCCTCGATTTACAGAATTACC
63368395 AAAATACCCT
Statistics
Matches: 178, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 178 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (54 bp):
AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
Found at i:63368413 original size:81 final size:81
Alignment explanation
Indices: 63368145--63368395 Score: 362
Period size: 81 Copynumber: 3.1 Consensus size: 81
63368135 CGACTTGTAA
63368145 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
*
63368210 TACCCTCGATTTACAG
66 TACCCTCAATTTACAG
* * * *
63368226 AATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTATCCTC-GATTTACAGAATTATTGT
1 AATTACCATTTTACCCTCGA-TTTACAGAATTACCATTTTACCCTCAG-TTTACAGAATTACTGT
* *
63368289 TTTCCCCTCAGTTTACAG
64 TTTACCCTCAATTTACAG
* * * *
63368307 AATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
*
63368372 TACCTTCAATTTACAG
66 TACCCTCAATTTACAG
63368388 AATTACCA
1 AATTACCA
63368396 AAATACCCTT
Statistics
Matches: 147, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
80 2 0.01
81 143 0.97
82 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (81 bp):
AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
TACCCTCAATTTACAG
Found at i:63368437 original size:54 final size:54
Alignment explanation
Indices: 63368388--63368538 Score: 239
Period size: 54 Copynumber: 2.8 Consensus size: 54
63368378 CAATTTACAG
* *
63368388 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAATTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAATTTGTAA
* **
63368442 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAATTTGTAA
* *
63368496 AATTACTAAAATACCCTTTGTTTATAAAATTACCGAAATACCC
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCC
63368539 TTGTAGGGTA
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 89 1.00
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAATTTGTAA
Found at i:63368489 original size:27 final size:27
Alignment explanation
Indices: 63368388--63368541 Score: 200
Period size: 27 Copynumber: 5.7 Consensus size: 27
63368378 CAATTTACAG
63368388 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * ** *
63368415 AATCACCAAAATACCCCTAATTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
63368442 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
63368469 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
63368496 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
63368523 AATTACCGAAATACCCTTG
1 AATTACCAAAATACCCTTG
63368542 TAGGGTAGAA
Statistics
Matches: 104, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:63368541 original size:81 final size:81
Alignment explanation
Indices: 63368381--63368541 Score: 223
Period size: 81 Copynumber: 2.0 Consensus size: 81
63368371 TTACCTTCAA
* * *
63368381 TTTACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAATTTGTAAAATT
1 TTTACAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAATTTATAAAATT
*
63368446 ACTAAAATACCCTTGG
66 ACCAAAATACCCTTGG
* * * * **
63368462 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATT
1 TTTACAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAATTTATAAAATT
*
63368527 ACCGAAATACCCTTG
66 ACCAAAATACCCTTG
63368542 TAGGGTAGAA
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 69 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.32
Consensus pattern (81 bp):
TTTACAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAAATACCCCTAATTTATAAAATT
ACCAAAATACCCTTGG
Found at i:63371191 original size:16 final size:16
Alignment explanation
Indices: 63371172--63371203 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63371162 AATTGTTTTA
63371172 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
63371188 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
63371204 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:63371480 original size:50 final size:50
Alignment explanation
Indices: 63371403--63371696 Score: 311
Period size: 50 Copynumber: 5.9 Consensus size: 50
63371393 ACCGAAGCTC
* * * *
63371403 TCTGGTACGCATAGTAGCATGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * * *
63371453 TCTGGTACACGTAGGAGTCTACACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * ** *
63371503 TCTGATACACGTAGTAGCCTGCACTTAGTAATACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * * * *
63371555 -CAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * *
63371604 TCTAGTACACGTAGTAGCCAGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * *
63371654 TCTGATACACATAGTAGCCTGCACTTAGTACTATACACGTGAC
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
63371697 TCGCAATGGA
Statistics
Matches: 196, Mismatches: 45, Indels: 6
0.79 0.18 0.02
Matches are distributed among these distances:
49 3 0.02
50 156 0.80
51 36 0.18
52 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
Found at i:63371669 original size:151 final size:151
Alignment explanation
Indices: 63371406--63371695 Score: 492
Period size: 151 Copynumber: 1.9 Consensus size: 151
63371396 GAAGCTCTCT
* *
63371406 GGTACGCATAGTAGCATGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGGAGT
1 GGTACGCATAGTAGCATGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGGAGT
* *
63371471 CTACACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTAATA
66 CCACACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTGCACTTAGTAATA
63371536 CACACGTGATCGAAGTTAACA
131 CACACGTGATCGAAGTTAACA
* *
63371557 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAG-
1 GGTACGCATAGTAGCATGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGGAGT
*
63371621 CCAGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTGCACTTAGTACT
66 CCA-CACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTGCACTTAGTAAT
*
63371686 ATACACGTGA
130 ACACACGTGA
63371696 CTCGCAATGG
Statistics
Matches: 130, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
150 2 0.02
151 128 0.98
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCATGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGGAGT
CCACACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTGCACTTAGTAATA
CACACGTGATCGAAGTTAACA
Found at i:63378154 original size:22 final size:21
Alignment explanation
Indices: 63378115--63378156 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
63378105 TTTTAAGATT
63378115 ATACCTAATAAAAAATAATAG
1 ATACCTAATAAAAAATAATAG
* *
63378136 ATACCTATATAATATATAATA
1 ATACCTA-ATAAAAAATAATA
63378157 AATATAATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (21 bp):
ATACCTAATAAAAAATAATAG
Found at i:63378185 original size:26 final size:26
Alignment explanation
Indices: 63378147--63378260 Score: 107
Period size: 26 Copynumber: 4.5 Consensus size: 26
63378137 TACCTATATA
63378147 ATATATAAT-AAATAT-AATGAATAAT
1 ATATATAATAAAATATAAAT-AATAAT
63378172 ATATATAATAAAATGTATAAATCAA-AAT
1 ATATATAATAAAA--TATAAAT-AATAAT
* *
63378200 ATATATAACAAAATGTAAATAAT-AT
1 ATATATAATAAAATATAAATAATAAT
*
63378225 AATAAATAATAAAA-AT-AA-AATAAT
1 -ATATATAATAAAATATAAATAATAAT
63378249 ATATATAATAAA
1 ATATATAATAAA
63378261 TTTTTTACAT
Statistics
Matches: 75, Mismatches: 7, Indels: 16
0.77 0.07 0.16
Matches are distributed among these distances:
23 14 0.19
24 4 0.05
25 14 0.19
26 20 0.27
28 18 0.24
29 5 0.07
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (26 bp):
ATATATAATAAAATATAAATAATAAT
Found at i:63378190 original size:14 final size:14
Alignment explanation
Indices: 63378141--63378260 Score: 85
Period size: 14 Copynumber: 8.8 Consensus size: 14
63378131 AATAGATACC
63378141 TATATAATATATAATA
1 TATATAATA-A-AATA
*
63378157 AATATAATGAATAATA
1 TATATAAT-AA-AATA
*
63378173 TATATAATAAAATG
1 TATATAATAAAATA
63378187 TATA-AATCAAAATA
1 TATATAAT-AAAATA
* *
63378201 TATATAACAAAATG
1 TATATAATAAAATA
* *
63378215 TAAATAATATAATA
1 TATATAATAAAATA
63378229 -A-ATAATAAAA-A
1 TATATAATAAAATA
63378240 TA-A-AAT--AATA
1 TATATAATAAAATA
63378250 TATATAATAAA
1 TATATAATAAA
63378261 TTTTTTACAT
Statistics
Matches: 84, Mismatches: 11, Indels: 20
0.73 0.10 0.17
Matches are distributed among these distances:
9 2 0.02
10 3 0.04
11 5 0.06
12 13 0.15
13 4 0.05
14 32 0.38
15 4 0.05
16 20 0.24
17 1 0.01
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.33
Consensus pattern (14 bp):
TATATAATAAAATA
Found at i:63378240 original size:21 final size:23
Alignment explanation
Indices: 63378197--63378260 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 23
63378187 TATAAATCAA
* *
63378197 AATATATATAA-CAAAATGTAAAT
1 AATATATATAATAAAAAT-AAAAT
63378220 AATATAATAAATAATAAAAATAAAAT
1 AATAT-AT--ATAATAAAAATAAAAT
63378246 AATATATATAATAAA
1 AATATATATAATAAA
63378261 TTTTTTACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
23 13 0.37
24 2 0.06
25 2 0.06
26 13 0.37
27 5 0.14
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (23 bp):
AATATATATAATAAAAATAAAAT
Found at i:63378261 original size:16 final size:16
Alignment explanation
Indices: 63378141--63378261 Score: 87
Period size: 16 Copynumber: 7.8 Consensus size: 16
63378131 AATAGATACC
*
63378141 TATATAATATATAATA
1 TATATAATAAATAATA
* *
63378157 AATATAATGAATAATA
1 TATATAATAAATAATA
*
63378173 TATATAAT-AA-AATG
1 TATATAATAAATAATA
*
63378187 TATA-AATCAA-AATA
1 TATATAATAAATAATA
*
63378201 TATATAACAAAATGTAA-A
1 TATATAA-TAAA--TAATA
63378219 TAATATAATAAATAATA
1 T-ATATAATAAATAATA
63378236 -A-A-AATAAAATAATA
1 TATATAAT-AAATAATA
63378250 TATATAATAAAT
1 TATATAATAAAT
63378262 TTTTTACATT
Statistics
Matches: 84, Mismatches: 9, Indels: 24
0.72 0.08 0.21
Matches are distributed among these distances:
13 6 0.07
14 25 0.30
15 6 0.07
16 30 0.36
17 4 0.05
18 5 0.06
19 8 0.10
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (16 bp):
TATATAATAAATAATA
Found at i:63378261 original size:21 final size:22
Alignment explanation
Indices: 63378215--63378261 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
63378205 TAACAAAATG
*
63378215 TAAATAATATAATAAATAATAA
1 TAAATAAAATAATAAATAATAA
*
63378237 -AAATAAAATAATATAT-ATAA
1 TAAATAAAATAATAAATAATAA
63378257 TAAAT
1 TAAAT
63378262 TTTTTACATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (22 bp):
TAAATAAAATAATAAATAATAA
Found at i:63378334 original size:16 final size:17
Alignment explanation
Indices: 63378298--63378335 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
63378288 GGTAAAATAA
*
63378298 ATAAAATATATAATATT
1 ATAAAATAAATAATATT
63378315 -TAAAATAAATAA-ATT
1 ATAAAATAAATAATATT
63378330 ATAAAA
1 ATAAAA
63378336 ATTTAAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
ATAAAATAAATAATATT
Found at i:63378344 original size:25 final size:25
Alignment explanation
Indices: 63378290--63378343 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
63378280 ATGTTTATGG
*
63378290 TAAAATAAATAAAATATATAATATT
1 TAAAATAAATAAAATATATAAAATT
*
63378315 TAAAATAAATAAATTATA-AAAATT
1 TAAAATAAATAAAATATATAAAATT
63378339 TAAAA
1 TAAAA
63378344 AGGATTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (25 bp):
TAAAATAAATAAAATATATAAAATT
Found at i:63380804 original size:30 final size:31
Alignment explanation
Indices: 63380760--63380817 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
63380750 TTAATACGAA
*
63380760 TTTTAGCAAAATTACATTTTTGCCCCTAAAC
1 TTTTAGCAAAATTACACTTTTGCCCCTAAAC
*
63380791 TTTT-GCATAATTACACTTTTGCCCCTA
1 TTTTAGCAAAATTACACTTTTGCCCCTA
63380818 GGCTCGAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (31 bp):
TTTTAGCAAAATTACACTTTTGCCCCTAAAC
Found at i:63383960 original size:976 final size:982
Alignment explanation
Indices: 63381646--63386145 Score: 6244
Period size: 988 Copynumber: 4.6 Consensus size: 982
63381636 AACTGATTTC
63381646 TTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATAA
1 TTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATAA
* * * * * * *
63381711 ACTAT-TTTCATACTAAATGATAACACCTGGAAAGAGTTATAATTCATTCCTTTAGGCTGGGTCT
66 ACCATCTGTCATACTGAATGATAACTCTTGGAAAGAGTTATAATTCATGCCTTTAGGCTGGGTCA
** * * * *
63381775 ATTAAC-AGAATTTAAGTGAACTTAGTTGCATTTTAGGATACTATTTTAGTACTTTTACAACATT
131 ATTGTCTATAA-TTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCACTTTTAGAACATT
63381839 GCATAAGAAGATTGGATAGTGCTTAAA-ACTTATTATTTGTTACTTTTAATTTCTTGTGGTAGGG
195 GCATAAGAAGATTGGATAGTGCTTAAATA-TTATTATTTGTTACTTTTAATTTCTTGTGGTAGGG
* * *
63381903 CTGTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAACAAACAAAGGAGGGAATGTTTGCT-G
259 CTGTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAACGTTTGCTGG
* * * ** * * *
63381967 GGCAAAGAGTTGGACATTTTGCCAAAATGGATGCTGTGAAAACGCCAAGAAGACTGAGTTAACAC
324 GGCAAAGAGTTGGACATTTTTCCAAAATGAAT-TTGTGGCAATGTCAGGAAGACTGAGTTAACAC
* * * * *
63382032 TCAACGCATG-CTAGTTTCAGCCCAACTTTACTTGTACAGAAAAA-TCCGCCTGAAAGATAGGAG
388 TCAACGCATGCCAAGTTTCAGCCCAACTTTACTTGTACAAAAAAATTTC-CCTAAAAAATAGGAG
* *
63382095 AAGATAATATTGGGTTGTTGAAAAAAGAATTTAAATAGAGGAGAAGATAAGCATGGGTTTTGGGA
452 AAGATAATATTGGGTTGTCGAAAAAAGAATTTAAATAGAGGAGAAGATAAACATGGGTTTTGGGA
* *
63382160 TTTACCCTAGG-AAAAAGCTATAAAAAGCCAACT-ATGGAAACACTAAACAACGAAC-AAAAAGT
517 TTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGA-GGAAACACTAAACGACAAACAAAAAAGT
* * * *
63382222 GGGATAGATCCTTAGGCATGAATAAGGGTTTGGCTACGCAAGGGAAAGAAAGTTGAAGGCAGTCC
581 GGGAGAGATCCTCAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTTGAAGGCAGTCC
* ** *
63382287 TTTTTAGCCATCACAAGATGTTGTGCCACCGAAGTGTGGACTGGGCAAGTGAAAGCTGTTTCCCA
646 TTCTTAGCCATCACAAGATGTTGTGCTGCCGAAGTGTGGACTGGGCAAGCGAAAGCTGTTTCCCA
* * *
63382352 AAGTTCTTTTGTTATTTCCATTAGTGTTCCTTTGAAAGATTGAATTGTAGTAGTTGAACGCAATG
711 AAGTTCTTTTGTTATTTCCATTAGTGTTCCTTTGAAAGATTGAATTGAATTAGTTGAACACAATG
* * * * * *
63382417 TCAGATACTATTTTGGTTTGGAATTTTATTTCCCAACCAATGAACCAAATCTTATAAGGTTGGGG
776 TCAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAAATCTCATAAGGTTGGGA
*
63382482 TTACTTTC-ATGAAACCTTAAACTATTTTTATGGATTG-AGTATATATCTAATTTACTTTACTG-
841 TTACTTCCAATGAAACCTTAAACTATTTTTATGGA-TGCAGTATATATCTAATTTACTTTACTGT
* * * * *
63382544 TTCATTTGATTGTTTTTATTTCTTAACTAAAATGCCAATGATCTCTATACATAGAAGACTGTTTG
905 TTCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGACTGTTTG
63382609 CATACTTATAAACTGA
970 CATACTTAT-AA-T-A
63382625 TTACTTAAGCATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAA
1 TTA---AA-CATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAA
* * *
63382690 ATAAACCCTTCTGTCATAGTGAATGATAAGTCTT-GAAAGGAGTTATAATTCATGCCTTTAGGCT
62 ATAAA-CCATCTGTCATACTGAATGATAACTCTTGGAAA-GAGTTATAATTCATGCCTTTAGGCT
* * * * * *
63382754 GGGTCAATTCTCTATACTTAACTGGACTTAGTTGCATTTTAGGATATTATTTTAGTACATTTAGA
125 GGGTCAATTGTCTATAATTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCACTTTTAGA
* * * *
63382819 ACATTGCATAAGAAGATTGGATAGTGCTTAAATATTATTATCTATTACTTCTAATTTCTTATGGT
190 ACATTGCATAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGT
* * * * *
63382884 AGGGTTGTGTTTGGTGGTTTGGTAGGTGTAGAATGTGGAGAAAGAAACAAAGAAATGAACGTTTG
255 AGGGCTGTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAACGTTTG
* *
63382949 TTGGGGTAAAGAGTTGGACATTTTTCCAAAATGAATTATGTGGCAATG-CAAGGAAGACTGAGTT
320 CTGGGGCAAAGAGTTGGACATTTTTCCAAAATGAATT-TGTGGCAATGTC-AGGAAGACTGAGTT
* *
63383013 AACACTCAACGCATGCCAACTTT-AGCCCAACTCTACTTGTACAAAAAAATTTCCCTAAAAAATA
383 AACACTCAACGCATGCCAAGTTTCAGCCCAACTTTACTTGTACAAAAAAATTTCCCTAAAAAATA
* * *
63383077 GGAGAAGATAGTATTGGGTTGTCGTAAAAAGAATTTAAATA-ACAGAGAAGATAAACATGGGTTT
448 GGAGAAGATAATATTGGGTTGTCGAAAAAAGAATTTAAATAGA-GGAGAAGATAAACATGGGTTT
* * *
63383141 TGGGATTTACCCTAGGAGAAAAGCTATAAAAAGGCAACTGAAGAAACACTAAACGACAAACAAAA
512 TGGGATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACACTAAACGACAAACAAAA
* * * *
63383206 AAGCGGGAGAGATCCTCAGGCGTGAATAAGGCTTTGGCTACTTAAGGGAAAGAAAGTTGAAGGTA
577 AAGTGGGAGAGATCCTCAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTTGAAGGCA
* * *
63383271 GTCCTTCTTAGCCATCACAAGATGTTGTGTTGCCGAAGTGTGGATTGGGCGAGCGAAAGCTGTTT
642 GTCCTTCTTAGCCATCACAAGATGTTGTGCTGCCGAAGTGTGGACTGGGCAAGCGAAAGCTGTTT
* * *
63383336 TCTAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTTGAAAGATTGAATTGAATTTGTTGAACAC
707 CCCAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTTGAAAGATTGAATTGAATTAGTTGAACAC
* *
63383401 AATGTCAGATAATATTTTGGTTTGGGATTTTATTTCCCACCCCATGAGCCAAATCTCATAAGGTT
772 AATGTCAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAAATCTCATAAGGTT
* * *
63383466 GGGATTACTTCCAATGAAACCTTAAACTATTTTTATGGAAGCAATATATATCTAATTTACTTTAT
837 GGGATTACTTCCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTAC
* *
63383531 TGTTTCATTTGATTGTTTTTATTTCTTAATTAAAATGAAAATGATCTCTAGACATAAAAGACTGT
902 TGTTTCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGACTGT
*
63383596 TTGTAT-C-T-T-AT-
967 TTGCATACTTATAATA
* *
63383607 TTAAACGTGATCAGAAGAATGAGTTTATCTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATAA
1 TTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATAA
* * *
63383672 ACCAT-TGTCATACTGAATGATAACTTTTGGAAATAGTTATAATTCATACCTTTAGGCTGGGTCA
66 ACCATCTGTCATACTGAATGATAACTCTTGGAAAGAGTTATAATTCATGCCTTTAGGCTGGGTCA
* * * *
63383736 ATTGCCTCTAATTAAGTGAACTTAGTTCCATTTTAGGATATTATTTTAGCACTTTTAGAACATTT
131 ATTGTCTATAATTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCACTTTTAGAACATTG
63383801 CATAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCT
196 CATAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCT
* * *
63383866 GTGTTTGGTGGTTTGGTAAGTGCAGGATGCGGAGAAAGAAACAAAGAAGTGAACGTTTGCTGGGG
261 GTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAACGTTTGCTGGGG
* * * * * *
63383931 CAAAGAGTTGGACATTTTGCCAAAATGAATGTTGTAGTAATGCCAGGAAGACTAAGTTAACACCC
326 CAAAGAGTTGGACATTTTTCCAAAATGAAT-TTGTGGCAATGTCAGGAAGACTGAGTTAACACTC
* * * * *
63383996 AACGCATTCC-AGTTTCAGCCCAACTTTACTTGTACCAAAAAATCTGCCTAAAAAATAAGAGAAG
390 AACGCATGCCAAGTTTCAGCCCAACTTTACTTGTACAAAAAAATTTCCCTAAAAAATAGGAGAAG
*
63384060 ATAATATTGGGTTGTCGAGAAAAGAATTTAAATAGAGGAGAAGATAAACATGGG-TTTGGGATTT
455 ATAATATTGGGTTGTCGAAAAAAGAATTTAAATAGAGGAGAAGATAAACATGGGTTTTGGGATTT
* * * *
63384124 ACCCTAGGAAAAAAGCTATAAAAAGCCAACTGTGGAAGCACTAAATGACAAACAAAAAAGTTGGA
520 ACCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACACTAAACGACAAACAAAAAAGTGGGA
* * **
63384189 GAGATTCTCAGGC-TGAATAAGGGTTTGGCTACGTAAAGGAAAGAAAGTTGAAGGCAGTTGTTCT
585 GAGATCCTCAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTTGAAGGCAGTCCTTCT
* * * * *
63384253 TAGCCATCACAAGATGTTGTGTTGCCAAAGTGTGGACTTGGCACGCAAAAGCTGTTTCCCAAAGT
650 TAGCCATCACAAGATGTTGTGCTGCCGAAGTGTGGACTGGGCAAGCGAAAGCTGTTTCCCAAAGT
* * *
63384318 TCTTTTGTTATTTCTATTAGTGTTCCTTCGAAAGATTGAATTGAATTTGTTGAACACAATGTCAG
715 TCTTTTGTTATTTCCATTAGTGTTCCTTTGAAAGATTGAATTGAATTAGTTGAACACAATGTCAG
* *
63384383 ATAATATTTTGGTTTGGAATTTTATTTCCTAGCCCATGAGCCAAATCTCATAATGTTGGGATTAC
780 ATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAAATCTCATAAGGTTGGGATTAC
* *
63384448 TTCCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCT-ATTATATTTTACCGTTTCA
845 TTCCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATT-TACTTTACTGTTTCA
** * *
63384512 TTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGGTTGTTCGCATG
909 TTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGACTGTTTGCATA
63384577 CTTATAAACTGA
974 CTTAT-AA-T-A
* *
63384589 TTTCTTAAACATGATCAGAAGAATGGGTTTATGTTTTTGAACTACTTTGAAGCTTAAAAATGAAA
1 ----TTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAA
** * * *
63384654 ATAAACCATTCTGTCATGGTGAATGATAACTCTTGAAAAGAGTTATAATTCTTGCCTTTAGGTTG
62 ATAAACCA-TCTGTCATACTGAATGATAACTCTTGGAAAGAGTTATAATTCATGCCTTTAGGCTG
* * **
63384719 GGTCAATTGTCTATACTTAATTGAACGAAGTTGCATTTTAGGATATTATTTTAGCACTTTTAGAA
126 GGTCAATTGTCTATAATTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCACTTTTAGAA
* ** *
63384784 CATTGCATAAGAAGATGGGATAGCACATAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTA
191 CATTGCATAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTA
* * * *
63384849 GGGTTGTATTTGGTGGTTTGGTAGGTGCAAGATGTTGAGAAAGAAACAAAGGAGTGAACGTTTGC
256 GGGCTGTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAACGTTTGC
* * * *
63384914 TAGGGTAAAGAGTTGGACATTTTTCCAAAATGAATGTTGTGGTAATGTCGGGAAGACTGAGTTAA
321 TGGGGCAAAGAGTTGGACATTTTTCCAAAATGAAT-TTGTGGCAATGTCAGGAAGACTGAGTTAA
* * * * *
63384979 CACTCAATGCATGCCAA-TTTCAGCCCAACTTTACTTGTACTAGAAAATCTGCCTAAAAAATAGG
385 CACTCAACGCATGCCAAGTTTCAGCCCAACTTTACTTGTACAAAAAAATTTCCCTAAAAAATAGG
* * * * *
63385043 AGAAGACAATATTTGTTTGTCGAAAAAAGAATTGAAATAGAGGAGAAG-TAAACATGGGTTTTTG
450 AGAAGATAATATTGGGTTGTCGAAAAAAGAATTTAAATAGAGGAGAAGATAAACATGGGTTTTGG
* * * *
63385107 GATTTACCCTAGGAAAAAAAACTATAAAAAGCCAATTGAGGAAACACTAAATGACGAACAAAAAA
515 GATTTACCCTAGG-AAAAAAGCTATAAAAAGCCAACTGAGGAAACACTAAACGACAAACAAAAAA
* *
63385172 GTGGGAGAGATCCTCAGGCGTGAATAAGGGTTTGGCTACTTAAGGGAAAGAAAGTTGAAGGTAGT
579 GTGGGAGAGATCCTCAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTTGAAGGCAGT
* * * *
63385237 -C--CTTACCCTTCACAAGATGTTGTGCAGCCGAAGTGTGGACTGGGCAAGTGAAAGCTGTTTCC
644 CCTTCTTAGCCATCACAAGATGTTGTGCTGCCGAAGTGTGGACTGGGCAAGCGAAAGCTGTTTCC
* *
63385299 CAAAGATCTTTTGTTATTTCCATTAGTGTTCCTTAGAAAGATTGAATTGAATTAGTTGAACACAA
709 CAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTTGAAAGATTGAATTGAATTAGTTGAACACAA
* *
63385364 TGTCAGATAATATTTTGGTTTGGAATTTTATTTCCTAGCCCATGAGCCAAATCTCATAAGGATGG
774 TGTCAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAAATCTCATAAGGTTGG
* * * *
63385429 GATTACTTTCAATGAAACCTTAAATTATTTTTATAGATGCAGTATATATCTAATTTACTTTAATG
839 GATTACTTCCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACTG
* * *
63385494 TTTCATTTGATTGTTCTTATTTCTTAATGAAAATGCAAATGATCTCTAGACATAGAAGACTATTT
904 TTTCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGACTGTTT
63385559 GCATACTTATAAACGGATTA
969 GCATACTTAT--A---A-TA
* * * *
63385579 CGTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTTTTTTAAAGCTTAAAAATAAAAATA
1 -TTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATA
*
63385644 AACCATTCTGTCAT-CGTGAATGATAACTCTTAGAAAGAGTTATAATTCATGCCTTTAGGCTGGG
65 AACCA-TCTGTCATAC-TGAATGATAACTCTTGGAAAGAGTTATAATTCATGCCTTTAGGCTGGG
* *
63385708 TCAATTGTCTATACTTAAGTGAACTTATTTGCATTTTAGGATATTATTTTAGCACTTTTAGAACA
128 TCAATTGTCTATAATTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCACTTTTAGAACA
* * * * *
63385773 TTACATAAGAATATTTGATAATGCTTAAAGATTATTATTTGTTACTTTTAATTTCTTGTGGTAGG
193 TTGCATAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGG
* * * * * * * *
63385838 GCTGTGTTTGGTGGTTTGGTAAGTGTAGGATGTGCAAAAAGAAAAAAAGGAGTGTACATTTGTTG
258 GCTGTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAACGTTTGCTG
* * *
63385903 GGGCAAAGAGTTGGACATTTTTCCAAAATGGATGCTATGGCAATGTCAGGAAGACTGAGTTAACA
323 GGGCAAAGAGTTGGACATTTTTCCAAAATGAAT-TTGTGGCAATGTCAGGAAGACTGAGTTAACA
** * * *
63385968 CTCAACGCATG-TTAGTTTTAGCCCAACTTTACTTGTACCAGAAAAA-TCCGCCTAAAAAATAGG
387 CTCAACGCATGCCAAGTTTCAGCCCAACTTTACTTGTA-CAAAAAAATTTC-CCTAAAAAATAGG
* * *
63386031 AGAAGTTAATATTAGGTTGTC-AAATAAAGAATTTAAATAGAGGAGAAGATAAACATGGGTTTTT
450 AGAAGATAATATTGGGTTGTCGAAA-AAAGAATTTAAATAGAGGAGAAGATAAACATGGGTTTTG
*
63386095 GGATTTACCCTAGGAAAAAAGCTATAAAAAGGCAACTGAGGAAACACTAAA
514 GGATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACACTAAA
63386146 TGTAACACCC
Statistics
Matches: 3133, Mismatches: 332, Indels: 103
0.88 0.09 0.03
Matches are distributed among these distances:
973 3 0.00
974 339 0.11
975 84 0.03
976 379 0.12
977 11 0.00
978 59 0.02
979 6 0.00
980 1 0.00
982 5 0.00
983 61 0.02
984 7 0.00
985 213 0.07
986 240 0.08
987 734 0.23
988 741 0.24
989 143 0.05
990 105 0.03
991 2 0.00
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (982 bp):
TTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATAA
ACCATCTGTCATACTGAATGATAACTCTTGGAAAGAGTTATAATTCATGCCTTTAGGCTGGGTCA
ATTGTCTATAATTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCACTTTTAGAACATTG
CATAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCT
GTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAACGTTTGCTGGGG
CAAAGAGTTGGACATTTTTCCAAAATGAATTTGTGGCAATGTCAGGAAGACTGAGTTAACACTCA
ACGCATGCCAAGTTTCAGCCCAACTTTACTTGTACAAAAAAATTTCCCTAAAAAATAGGAGAAGA
TAATATTGGGTTGTCGAAAAAAGAATTTAAATAGAGGAGAAGATAAACATGGGTTTTGGGATTTA
CCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACACTAAACGACAAACAAAAAAGTGGGAG
AGATCCTCAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTTGAAGGCAGTCCTTCTT
AGCCATCACAAGATGTTGTGCTGCCGAAGTGTGGACTGGGCAAGCGAAAGCTGTTTCCCAAAGTT
CTTTTGTTATTTCCATTAGTGTTCCTTTGAAAGATTGAATTGAATTAGTTGAACACAATGTCAGA
TAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAAATCTCATAAGGTTGGGATTACT
TCCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACTGTTTCATT
TGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGACTGTTTGCATACT
TATAATA
Found at i:63385618 original size:987 final size:987
Alignment explanation
Indices: 63381625--63386147 Score: 6463
Period size: 987 Copynumber: 4.6 Consensus size: 987
63381615 GGATATTACA
*
63381625 GCATACTTATAAACTGATTTCTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTT
1 GCATACTTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTT
* * * * * *
63381690 GAAGCTTAAAAATGAAAATAAACTATT-T-TCATACTAAATGATAACACCTGGAAAGAGTTATAA
66 GAAGCTTAAAAATGAAAATAAACCATTCTGTCATAGTGAATGATAACTCTTGAAAAGAGTTATAA
* * ** * * *
63381753 TTCATTCCTTTAGGCTGGGTCTATTAAC-AGAATTTAAGTGAACTTAGTTGCATTTTAGGATACT
131 TTCATGCCTTTAGGCTGGGTCAATTGTCTA-TACTTAAGTGAACTTAGTTGCATTTTAGGATATT
* *
63381817 ATTTTAGTACTTTTACAACATTGCATAAGAAGATTGGATAGTGCTTAAA-ACTTATTATTTGTTA
195 ATTTTAGCACTTTTAGAACATTGCATAAGAAGATTGGATAGTGCTTAAATA-TTATTATTTGTTA
*
63381881 CTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAACAAA
259 CTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAA
* * * * * ** *
63381946 CAAAGGAGGGAATGTTTGCT-GGGCAAAGAGTTGGACATTTTGCCAAAATGGATGCTGTGAAAAC
324 CAAAGGAGTGAACGTTTGCTGGGGCAAAGAGTTGGACATTTTTCCAAAATGAATGTTGTGGCAAT
* *
63382010 GCCAAGAAGACTGAGTTAACACTCAACGCATGCTAGTTTCAGCCCAACTTTACTTGTA-CAGAAA
389 GCCAGGAAGACTGAGTTAACACTCAACGCATGCCAGTTTCAGCCCAACTTTACTTGTACCAG-AA
* * * *
63382074 AATCCGCCTGAAAGATAGGAGAAGATAATATTGGGTTGTTGAAAAAAGAATTTAAATAGAGGAGA
453 AATCTGCCTAAAAAATAGGAGAAGATAATATTGGGTTGTCGAAAAAAGAATTTAAATAGAGGAGA
*
63382139 AGATAAGCATGGGTTTTGGGATTTACCCTAGG-AAAAAGCTATAAAAAGCCAACT-ATGGAAACA
518 AGATAAACATGGGTTTTGGGATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGA-GGAAACA
** * * * * *
63382202 CTAAACAACGAAC-AAAAAGTGGGATAGATCCTTAGGCATGAATAAGGGTTTGGCTACGCAAGGG
582 CTAAATGACAAACAAAAAAGTGGGAGAGATCCTCAGGCGTGAATAAGGGTTTGGCTACGTAAGGG
*
63382266 AAAGAAAGTTGAAGGCAGTCCTTTTTAGCCATCACAAGATGTTGTGCCA-CCGAAGTGTGGACTG
647 AAAGAAAGTTGAAGGTAGTCC---TTAGCCATCACAAGATGTTGTG-CAGCCGAAGTGTGGACTG
*
63382330 GGCAAGTGAAAGCTGTTTCCCAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTTGAAAGATTGA
708 GGCAAGCGAAAGCTGTTTCCCAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTTGAAAGATTGA
* * * * * *
63382395 ATTGTAGTAGTTGAACGCAATGTCAGATACTATTTTGGTTTGGAATTTTATTTCCCAACCAATGA
773 ATTGAATTAGTTGAACACAATGTCAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGA
* * * *
63382460 ACCAAATCTTATAAGGTTGGGGTTACTTTC-ATGAAACCTTAAACTATTTTTATGGATTG-AGTA
838 GCCAAATCTCATAAGGTTGGGATTACTTCCAATGAAACCTTAAACTATTTTTATGGA-TGCAGTA
* * *
63382523 TATATCTAATTTACTTTACTG-TTCATTTGATTGTTTTTATTTCTTAACTAAAATGCCAATGATC
902 TATATCTAATTTACTTTACTGTTTCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATC
* *
63382587 TCTATACATAGAAGACTGTTT
967 TCTAGACATAAAAGACTGTTT
*
63382608 GCATACTTATAAACTGATTACTTAAGCATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTT
1 GCATACTTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTT
* * *
63382673 GAAGCTTAAAAATGAAAATAAACCCTTCTGTCATAGTGAATGATAAGTCTTGAAAGGAGTTATAA
66 GAAGCTTAAAAATGAAAATAAACCATTCTGTCATAGTGAATGATAACTCTTGAAAAGAGTTATAA
* * *
63382738 TTCATGCCTTTAGGCTGGGTCAATTCTCTATACTTAACTGGACTTAGTTGCATTTTAGGATATTA
131 TTCATGCCTTTAGGCTGGGTCAATTGTCTATACTTAAGTGAACTTAGTTGCATTTTAGGATATTA
* * * *
63382803 TTTTAGTACATTTAGAACATTGCATAAGAAGATTGGATAGTGCTTAAATATTATTATCTATTACT
196 TTTTAGCACTTTTAGAACATTGCATAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACT
* * * * *
63382868 TCTAATTTCTTATGGTAGGGTTGTGTTTGGTGGTTTGGTAGGTGTAGAATGTGGAGAAAGAAACA
261 TTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACA
* * * *
63382933 AAGAAATGAACGTTTGTTGGGGTAAAGAGTTGGACATTTTTCCAAAATGAAT-TATGTGGCAATG
326 AAGGAGTGAACGTTTGCTGGGGCAAAGAGTTGGACATTTTTCCAAAATGAATGT-TGTGGCAATG
* * * * *
63382997 CAAGGAAGACTGAGTTAACACTCAACGCATGCCAACTTT-AGCCCAACTCTACTTGTACAAAAAA
390 CCAGGAAGACTGAGTTAACACTCAACGCATGCC-AGTTTCAGCCCAACTTTACTTGTACCAGAAA
* * * * *
63383061 ATTTCCCTAAAAAATAGGAGAAGATAGTATTGGGTTGTCGTAAAAAGAATTTAAATA-ACAGAGA
454 ATCTGCCTAAAAAATAGGAGAAGATAATATTGGGTTGTCGAAAAAAGAATTTAAATAGA-GGAGA
* * *
63383125 AGATAAACATGGGTTTTGGGATTTACCCTAGGAGAAAAGCTATAAAAAGGCAACTGAAGAAACAC
518 AGATAAACATGGGTTTTGGGATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACAC
* * * *
63383190 TAAACGACAAACAAAAAAGCGGGAGAGATCCTCAGGCGTGAATAAGGCTTTGGCTACTTAAGGGA
583 TAAATGACAAACAAAAAAGTGGGAGAGATCCTCAGGCGTGAATAAGGGTTTGGCTACGTAAGGGA
** *
63383255 AAGAAAGTTGAAGGTAGTCCTTCTTAGCCATCACAAGATGTTGTGTTGCCGAAGTGTGGATTGGG
648 AAGAAAGTTGAAGGTAGT-C--CTTAGCCATCACAAGATGTTGTGCAGCCGAAGTGTGGACTGGG
* * *
63383320 CGAGCGAAAGCTGTTTTCTAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTTGAAAGATTGAAT
710 CAAGCGAAAGCTGTTTCCCAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTTGAAAGATTGAAT
* * *
63383385 TGAATTTGTTGAACACAATGTCAGATAATATTTTGGTTTGGGATTTTATTTCCCACCCCATGAGC
775 TGAATTAGTTGAACACAATGTCAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGC
* *
63383450 CAAATCTCATAAGGTTGGGATTACTTCCAATGAAACCTTAAACTATTTTTATGGAAGCAATATAT
840 CAAATCTCATAAGGTTGGGATTACTTCCAATGAAACCTTAAACTATTTTTATGGATGCAGTATAT
* * *
63383515 ATCTAATTTACTTTATTGTTTCATTTGATTGTTTTTATTTCTTAATTAAAATGAAAATGATCTCT
905 ATCTAATTTACTTTACTGTTTCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCT
63383580 AGACATAAAAGACTGTTT
970 AGACATAAAAGACTGTTT
* * *
63383598 G------TAT---C---TTATTTAAACGTGATCAGAAGAATGAGTTTATCTTTTTGAACTATTTT
1 GCATACTTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTT
* * * *
63383651 GAAGCTTAAAAATGAAAATAAACCA-T-TGTCATACTGAATGATAACTTTTGGAAATAGTTATAA
66 GAAGCTTAAAAATGAAAATAAACCATTCTGTCATAGTGAATGATAACTCTTGAAAAGAGTTATAA
* * * * *
63383714 TTCATACCTTTAGGCTGGGTCAATTGCCTCTAATTAAGTGAACTTAGTTCCATTTTAGGATATTA
131 TTCATGCCTTTAGGCTGGGTCAATTGTCTATACTTAAGTGAACTTAGTTGCATTTTAGGATATTA
*
63383779 TTTTAGCACTTTTAGAACATTTCATAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACT
196 TTTTAGCACTTTTAGAACATTGCATAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACT
* *
63383844 TTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGTTTGGTAAGTGCAGGATGCGGAGAAAGAAACA
261 TTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACA
* * * *
63383909 AAGAAGTGAACGTTTGCTGGGGCAAAGAGTTGGACATTTTGCCAAAATGAATGTTGTAGTAATGC
326 AAGGAGTGAACGTTTGCTGGGGCAAAGAGTTGGACATTTTTCCAAAATGAATGTTGTGGCAATGC
* * * *
63383974 CAGGAAGACTAAGTTAACACCCAACGCATTCCAGTTTCAGCCCAACTTTACTTGTACCAAAAAAT
391 CAGGAAGACTGAGTTAACACTCAACGCATGCCAGTTTCAGCCCAACTTTACTTGTACCAGAAAAT
* *
63384039 CTGCCTAAAAAATAAGAGAAGATAATATTGGGTTGTCGAGAAAAGAATTTAAATAGAGGAGAAGA
456 CTGCCTAAAAAATAGGAGAAGATAATATTGGGTTGTCGAAAAAAGAATTTAAATAGAGGAGAAGA
* *
63384104 TAAACATGGG-TTTGGGATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGTGGAAGCACTAA
521 TAAACATGGGTTTTGGGATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACACTAA
* * *
63384168 ATGACAAACAAAAAAGTTGGAGAGATTCTCAGGC-TGAATAAGGGTTTGGCTACGTAAAGGAAAG
586 ATGACAAACAAAAAAGTGGGAGAGATCCTCAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAG
* * ** * * *
63384232 AAAGTTGAAGGCAGTTGTTCTTAGCCATCACAAGATGTTGTGTTGCCAAAGTGTGGACTTGGCAC
651 AAAGTTGAA-G--GTAGTCCTTAGCCATCACAAGATGTTGTGCAGCCGAAGTGTGGACTGGGCAA
* * *
63384297 GCAAAAGCTGTTTCCCAAAGTTCTTTTGTTATTTCTATTAGTGTTCCTTCGAAAGATTGAATTGA
713 GCGAAAGCTGTTTCCCAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTTGAAAGATTGAATTGA
* *
63384362 ATTTGTTGAACACAATGTCAGATAATATTTTGGTTTGGAATTTTATTTCCTAGCCCATGAGCCAA
778 ATTAGTTGAACACAATGTCAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAA
*
63384427 ATCTCATAATGTTGGGATTACTTCCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATC
843 ATCTCATAAGGTTGGGATTACTTCCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATC
* *
63384492 T-ATTATATTTTACCGTTTCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAG
908 TAATT-TACTTTACTGTTTCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAG
** *
63384556 ACATAAAAGGTTGTTC
972 ACATAAAAGACTGTTT
* * * *
63384572 GCATGCTTATAAACTGATTTCTTAAACATGATCAGAAGAATGGGTTTATGTTTTTGAACTACTTT
1 GCATACTTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTT
*
63384637 GAAGCTTAAAAATGAAAATAAACCATTCTGTCATGGTGAATGATAACTCTTGAAAAGAGTTATAA
66 GAAGCTTAAAAATGAAAATAAACCATTCTGTCATAGTGAATGATAACTCTTGAAAAGAGTTATAA
* * * **
63384702 TTCTTGCCTTTAGGTTGGGTCAATTGTCTATACTTAATTGAACGAAGTTGCATTTTAGGATATTA
131 TTCATGCCTTTAGGCTGGGTCAATTGTCTATACTTAAGTGAACTTAGTTGCATTTTAGGATATTA
* ** *
63384767 TTTTAGCACTTTTAGAACATTGCATAAGAAGATGGGATAGCACATAAATATTATTATTTGTTACT
196 TTTTAGCACTTTTAGAACATTGCATAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACT
* * * *
63384832 TTTAATTTCTTGTGGTAGGGTTGTATTTGGTGGTTTGGTAGGTGCAAGATGTTGAGAAAGAAACA
261 TTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACA
* * * *
63384897 AAGGAGTGAACGTTTGCTAGGGTAAAGAGTTGGACATTTTTCCAAAATGAATGTTGTGGTAATGT
326 AAGGAGTGAACGTTTGCTGGGGCAAAGAGTTGGACATTTTTCCAAAATGAATGTTGTGGCAATGC
* * * *
63384962 CGGGAAGACTGAGTTAACACTCAATGCATGCCAATTTCAGCCCAACTTTACTTGTACTAGAAAAT
391 CAGGAAGACTGAGTTAACACTCAACGCATGCCAGTTTCAGCCCAACTTTACTTGTACCAGAAAAT
* * * *
63385027 CTGCCTAAAAAATAGGAGAAGACAATATTTGTTTGTCGAAAAAAGAATTGAAATAGAGGAGAAG-
456 CTGCCTAAAAAATAGGAGAAGATAATATTGGGTTGTCGAAAAAAGAATTTAAATAGAGGAGAAGA
* * *
63385091 TAAACATGGGTTTTTGGATTTACCCTAGGAAAAAAAACTATAAAAAGCCAATTGAGGAAACACTA
521 TAAACATGGGTTTTGGGATTTACCCTAGG-AAAAAAGCTATAAAAAGCCAACTGAGGAAACACTA
* *
63385156 AATGACGAACAAAAAAGTGGGAGAGATCCTCAGGCGTGAATAAGGGTTTGGCTACTTAAGGGAAA
585 AATGACAAACAAAAAAGTGGGAGAGATCCTCAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAA
* * *
63385221 GAAAGTTGAAGGTAGTCCTTACCCTTCACAAGATGTTGTGCAGCCGAAGTGTGGACTGGGCAAGT
650 GAAAGTTGAAGGTAGTCCTTAGCCATCACAAGATGTTGTGCAGCCGAAGTGTGGACTGGGCAAGC
* *
63385286 GAAAGCTGTTTCCCAAAGATCTTTTGTTATTTCCATTAGTGTTCCTTAGAAAGATTGAATTGAAT
715 GAAAGCTGTTTCCCAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTTGAAAGATTGAATTGAAT
*
63385351 TAGTTGAACACAATGTCAGATAATATTTTGGTTTGGAATTTTATTTCCTAGCCCATGAGCCAAAT
780 TAGTTGAACACAATGTCAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAAAT
* * * *
63385416 CTCATAAGGATGGGATTACTTTCAATGAAACCTTAAATTATTTTTATAGATGCAGTATATATCTA
845 CTCATAAGGTTGGGATTACTTCCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTA
* *
63385481 ATTTACTTTAATGTTTCATTTGATTGTTCTTATTTCTTAATGAAAATGCAAATGATCTCTAGACA
910 ATTTACTTTACTGTTTCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACA
* *
63385546 TAGAAGACTATTT
975 TAAAAGACTGTTT
* * *
63385559 GCATACTTATAAACGGATTACGTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTTTTTT
1 GCATACTTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTT
* * *
63385624 AAAGCTTAAAAATAAAAATAAACCATTCTGTCATCGTGAATGATAACTCTT-AGAAAGAGTTATA
66 GAAGCTTAAAAATGAAAATAAACCATTCTGTCATAGTGAATGATAACTCTTGA-AAAGAGTTATA
*
63385688 ATTCATGCCTTTAGGCTGGGTCAATTGTCTATACTTAAGTGAACTTATTTGCATTTTAGGATATT
130 ATTCATGCCTTTAGGCTGGGTCAATTGTCTATACTTAAGTGAACTTAGTTGCATTTTAGGATATT
* * * * *
63385753 ATTTTAGCACTTTTAGAACATTACATAAGAATATTTGATAATGCTTAAAGATTATTATTTGTTAC
195 ATTTTAGCACTTTTAGAACATTGCATAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTAC
* * * * *
63385818 TTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGTTTGGTAAGTGTAGGATGTGCAAAAAGAAAA
260 TTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAAC
* * * * * *
63385883 AAAGGAGTGTACATTTGTTGGGGCAAAGAGTTGGACATTTTTCCAAAATGGATGCTATGGCAATG
325 AAAGGAGTGAACGTTTGCTGGGGCAAAGAGTTGGACATTTTTCCAAAATGAATGTTGTGGCAATG
* ** *
63385948 TCAGGAAGACTGAGTTAACACTCAACGCATGTTAGTTTTAGCCCAACTTTACTTGTACCAGAAAA
390 CCAGGAAGACTGAGTTAACACTCAACGCATGCCAGTTTCAGCCCAACTTTACTTGTACCAG-AAA
* * *
63386013 ATCCGCCTAAAAAATAGGAGAAGTTAATATTAGGTTGTC-AAATAAAGAATTTAAATAGAGGAGA
454 ATCTGCCTAAAAAATAGGAGAAGATAATATTGGGTTGTCGAAA-AAAGAATTTAAATAGAGGAGA
* *
63386077 AGATAAACATGGGTTTTTGGATTTACCCTAGGAAAAAAGCTATAAAAAGGCAACTGAGGAAACAC
518 AGATAAACATGGGTTTTGGGATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACAC
63386142 TAAATG
583 TAAATG
63386148 TAACACCCTT
Statistics
Matches: 3154, Mismatches: 338, Indels: 91
0.88 0.09 0.03
Matches are distributed among these distances:
973 3 0.00
974 330 0.10
975 84 0.03
976 382 0.12
977 7 0.00
978 68 0.02
980 3 0.00
981 1 0.00
983 89 0.03
984 4 0.00
985 214 0.07
986 241 0.08
987 748 0.24
988 739 0.23
989 143 0.05
990 97 0.03
991 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (987 bp):
GCATACTTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTT
GAAGCTTAAAAATGAAAATAAACCATTCTGTCATAGTGAATGATAACTCTTGAAAAGAGTTATAA
TTCATGCCTTTAGGCTGGGTCAATTGTCTATACTTAAGTGAACTTAGTTGCATTTTAGGATATTA
TTTTAGCACTTTTAGAACATTGCATAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACT
TTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACA
AAGGAGTGAACGTTTGCTGGGGCAAAGAGTTGGACATTTTTCCAAAATGAATGTTGTGGCAATGC
CAGGAAGACTGAGTTAACACTCAACGCATGCCAGTTTCAGCCCAACTTTACTTGTACCAGAAAAT
CTGCCTAAAAAATAGGAGAAGATAATATTGGGTTGTCGAAAAAAGAATTTAAATAGAGGAGAAGA
TAAACATGGGTTTTGGGATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACACTAA
ATGACAAACAAAAAAGTGGGAGAGATCCTCAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAG
AAAGTTGAAGGTAGTCCTTAGCCATCACAAGATGTTGTGCAGCCGAAGTGTGGACTGGGCAAGCG
AAAGCTGTTTCCCAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTTGAAAGATTGAATTGAATT
AGTTGAACACAATGTCAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAAATC
TCATAAGGTTGGGATTACTTCCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAA
TTTACTTTACTGTTTCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACAT
AAAAGACTGTTT
Found at i:63392784 original size:41 final size:41
Alignment explanation
Indices: 63392726--63392809 Score: 132
Period size: 41 Copynumber: 2.0 Consensus size: 41
63392716 CAGTAGACTC
* *
63392726 AACAGGCAGGGTCTTGCTAAATACTAGTGTCTCACATACAT
1 AACAGACAGGGTCTTGCTAAATACTAATGTCTCACATACAT
* *
63392767 AACAGACAGGGTTTTGCTGAATACTAATGTCTCACATACAT
1 AACAGACAGGGTCTTGCTAAATACTAATGTCTCACATACAT
63392808 AA
1 AA
63392810 GAATGAGTAG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (41 bp):
AACAGACAGGGTCTTGCTAAATACTAATGTCTCACATACAT
Found at i:63393345 original size:20 final size:20
Alignment explanation
Indices: 63393320--63393357 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
63393310 GTTTATTCGC
*
63393320 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
63393340 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
63393358 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:63395003 original size:28 final size:28
Alignment explanation
Indices: 63394972--63395039 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
63394962 GCGTAGATCA
63394972 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
63395000 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
63395028 CG-AA-TACCCCTA
1 CGAAATTACCCCTA
63395040 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 8 0.20
27 2 0.05
28 30 0.75
ACGTcount: A:0.44, C:0.28, G:0.10, T:0.18
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:63401338 original size:20 final size:20
Alignment explanation
Indices: 63401313--63401350 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
63401303 GTTTATTCGC
*
63401313 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
63401333 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
63401351 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:63401975 original size:15 final size:16
Alignment explanation
Indices: 63401955--63401984 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
63401945 TTCTTCAAAA
63401955 CTATTCATC-ATACTG
1 CTATTCATCAATACTG
63401970 CTATTCATCAATACT
1 CTATTCATCAATACT
63401985 TTTGCCGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.30, C:0.27, G:0.03, T:0.40
Consensus pattern (16 bp):
CTATTCATCAATACTG
Found at i:63403005 original size:27 final size:27
Alignment explanation
Indices: 63402974--63403038 Score: 112
Period size: 27 Copynumber: 2.4 Consensus size: 27
63402964 TAGATCACGA
63402974 AATTACCCCTAAAGAGCAAAATTACCG
1 AATTACCCCTAAAGAGCAAAATTACCG
*
63403001 AATTACCCCTAAAGAGTAAAATTACCG
1 AATTACCCCTAAAGAGCAAAATTACCG
*
63403028 AAATACCCCTA
1 AATTACCCCTA
63403039 GGGTTTTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.45, C:0.26, G:0.09, T:0.20
Consensus pattern (27 bp):
AATTACCCCTAAAGAGCAAAATTACCG
Found at i:63409643 original size:26 final size:26
Alignment explanation
Indices: 63409614--63409689 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 26
63409604 ACATATTTTT
**
63409614 TCAAAATTTTATTAGGGGTAAAATTG
1 TCAAAATTTTATTAGGGGTAAAATCA
* **
63409640 TCAAATTTTTACCAGGGGTAAAATCA
1 TCAAAATTTTATTAGGGGTAAAATCA
*
63409666 TCAAAATTTTATTTGGGGTAAAAT
1 TCAAAATTTTATTAGGGGTAAAAT
63409690 AATGATGAGA
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (26 bp):
TCAAAATTTTATTAGGGGTAAAATCA
Found at i:63413220 original size:29 final size:29
Alignment explanation
Indices: 63413158--63413260 Score: 111
Period size: 29 Copynumber: 3.6 Consensus size: 29
63413148 GTGACGAGAT
* * *
63413158 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
63413187 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
*
63413216 TGGCACTATGTGTGC-AGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGA-GCTTGGAAT-ATA
63413245 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63413261 TGATTGAGTA
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
28 4 0.07
29 56 0.93
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:63420832 original size:29 final size:29
Alignment explanation
Indices: 63420770--63420872 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
63420760 GTGACGAGAT
* * *
63420770 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
63420799 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
63420828 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
63420857 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63420873 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:63426693 original size:40 final size:40
Alignment explanation
Indices: 63426631--63426851 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
63426621 ATTCGGATTG
*
63426631 ATAATCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
63426670 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
63426710 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
63426750 ATAACTGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
63426790 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
63426830 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
63426852 TACTTGGTTT
Statistics
Matches: 167, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 28 0.17
40 139 0.83
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:63430976 original size:37 final size:37
Alignment explanation
Indices: 63430918--63431057 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
63430908 CGAATAGTCC
* * * *
63430918 CCACACGTAGTTATCGGGTCTTACCCAGACAAAATCT
1 CCACACGTAGTCATCGAGTCTTACCCGGACATAATCT
63430955 CCACACGTAGTCATCGAGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGAGTCTTACCCGGACATAATCT
63430992 CCACACGTAGTCATCGAGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGAGTCTTACCCGGACATAATCT
*
63431029 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGAGTCTTACCCGGA
63431058 ATATATTTCC
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGAGTCTTACCCGGACATAATCT
Found at i:63431256 original size:48 final size:48
Alignment explanation
Indices: 63431198--63431517 Score: 451
Period size: 48 Copynumber: 7.0 Consensus size: 48
63431188 ATATACACAC
*
63431198 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
63431246 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
63431294 ATCTCATAC--A--T-----TAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
63431333 ATCTCATAC--A--T-----TAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
**
63431372 ATCTCATACATATTTCACGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
63431420 ATCTCATACGTATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
63431468 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
63431516 AT
1 AT
63431518 ATTTATCTTG
Statistics
Matches: 254, Mismatches: 9, Indels: 18
0.90 0.03 0.06
Matches are distributed among these distances:
39 75 0.30
41 1 0.00
43 1 0.00
44 1 0.00
46 1 0.00
48 175 0.69
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:63431312 original size:39 final size:39
Alignment explanation
Indices: 63431266--63431478 Score: 255
Period size: 39 Copynumber: 5.0 Consensus size: 39
63431256 TATTTCACAC
63431266 TAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACAT
63431305 TAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACAT
*
63431344 TAGCCATTTGGCTTTACCACATATACATATCTCATACATATTTCACGT
1 TAGCCATTCGGCTTTACCACATATACATA--TC-T-CATA---CA--T
63431392 TAGCCATTCGGCTTTACCACATATACATATCTCATACGTATTT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATAC--A--T
63431435 CACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 -----TAGCCATTCGGCTTTACCACATATACATATCTCATACAT
63431479 ATTTCACATT
Statistics
Matches: 154, Mismatches: 4, Indels: 27
0.83 0.02 0.15
Matches are distributed among these distances:
39 67 0.44
41 3 0.02
42 1 0.01
43 6 0.04
44 5 0.03
45 1 0.01
46 5 0.03
48 66 0.43
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (39 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACAT
Found at i:63437339 original size:31 final size:31
Alignment explanation
Indices: 63437302--63437572 Score: 416
Period size: 31 Copynumber: 8.7 Consensus size: 31
63437292 TGTGTACAAT
*
63437302 GTGAAAAGTGGTAGCTTCGGCTACCTAATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
63437333 GTGAAAAGTGGTAGTTTCAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
63437364 ATGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
63437395 GGGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
63437426 GTGAAAAGTGGTGGCTTCGGCTACCTAATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
63437457 GTGAAAAGTGGTGGCTTCGGCTACCTAATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
63437488 GTGAAAAGTGGTGGCTTCGGCTACCTTATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
63437519 GTGAAAAGTAGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
63437550 GTGAATAGTGATAGCTTCGGCTA
1 GTGAAAAGTGGTAGCTTCGGCTA
63437573 TTGAATGTGA
Statistics
Matches: 222, Mismatches: 18, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
31 222 1.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:63437592 original size:29 final size:29
Alignment explanation
Indices: 63437550--63437616 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
63437540 TACCTGATCA
* * **
63437550 GTGAATAGTGATAGCTTCGGCTATTGAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
*
63437579 GTGAAAAGGGATAGCTTTGGCTATCAAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
63437608 GTGAAAAGG
1 GTGAAAAGG
63437617 TGAGGTATAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (29 bp):
GTGAAAAGGGATAGCTTCGGCTATCAAAT
Found at i:63437655 original size:32 final size:33
Alignment explanation
Indices: 63437609--63437705 Score: 133
Period size: 32 Copynumber: 3.0 Consensus size: 33
63437599 CTATCAAATG
**
63437609 TGAAAAGGTGAGGTATACTTTGTGTATACCACA
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACA
* * *
63437642 TG-AAAGGAAAGGTATGCTTTGTGTATAGCATA
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACA
*
63437674 TGAAAAGGAAAGGTATACTTTGTGTGTACCAC
1 TGAAAAGGAAAGGTATACTTTGTGTATACCAC
63437706 TCAGAAAGAA
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
32 27 0.50
33 27 0.50
ACGTcount: A:0.34, C:0.10, G:0.26, T:0.30
Consensus pattern (33 bp):
TGAAAAGGAAAGGTATACTTTGTGTATACCACA
Found at i:63441187 original size:15 final size:15
Alignment explanation
Indices: 63441167--63441208 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
63441157 GCTGTAAATG
63441167 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
63441182 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
63441197 GGATTTCCTTAT
1 GGATTTCCTTAT
63441209 TCTGGGCTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:63443756 original size:93 final size:93
Alignment explanation
Indices: 63443644--63443815 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
63443634 GCCCATAAGT
* *
63443644 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63443709 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
63443737 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63443802 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
63443816 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:63443811 original size:46 final size:46
Alignment explanation
Indices: 63443636--63443811 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
63443626 TGTAACCCGC
* * *
63443636 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
63443682 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
63443732 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
63443775 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
63443812 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:63446233 original size:29 final size:29
Alignment explanation
Indices: 63446194--63446281 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
63446184 CAAAGATAAC
*
63446194 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
63446223 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
63446252 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
63446282 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:63446252 original size:15 final size:15
Alignment explanation
Indices: 63446194--63446272 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
63446184 CAAAGATAAC
*
63446194 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
63446208 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
63446223 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
63446237 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
63446252 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
63446267 AAGAAA
1 AAGAAA
63446273 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:63446281 original size:15 final size:15
Alignment explanation
Indices: 63446205--63446281 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
63446195 AGAAAACCGA
63446205 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
63446220 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
63446234 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
63446248 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
63446264 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
63446279 ATA
1 ATA
63446282 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:63449314 original size:93 final size:93
Alignment explanation
Indices: 63449202--63449373 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
63449192 GCCCATAAGT
* *
63449202 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63449267 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
63449295 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63449360 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
63449374 AAATATCCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:63449369 original size:46 final size:46
Alignment explanation
Indices: 63449194--63449369 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
63449184 TGTAACCCGC
* * *
63449194 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
63449240 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
63449290 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
63449333 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
63449370 TGCCAAATAT
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:63452264 original size:40 final size:39
Alignment explanation
Indices: 63452219--63452425 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
63452209 CGGAATACAA
*
63452219 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
63452259 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
63452299 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
63452339 CCGGATGTAGTCACTAGCACAATTGCCTTC-GGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
63452378 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
63452418 CCGGATAT
1 CCGGATAT
63452426 CATTCAATTG
Statistics
Matches: 140, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 33 0.24
40 107 0.76
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:63452359 original size:80 final size:80
Alignment explanation
Indices: 63452219--63452423 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
63452209 CGGAATACAA
* * *
63452219 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
63452283 GCCTTCGGGTATTAGC
66 GCCTTC-GGTATTAAC
* * *
63452299 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
63452362 TGCCTTCGGTCTTAAC
65 TGCCTTCGGTATTAAC
** * ** * *
63452378 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
63452424 ATCATTCAAT
Statistics
Matches: 107, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 45 0.42
80 58 0.54
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGTATTAAC
Found at i:63460340 original size:40 final size:39
Alignment explanation
Indices: 63460295--63460502 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
63460285 CGGAATACAA
*
63460295 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
63460335 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
63460375 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
63460415 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
63460455 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
63460495 CCGGATAT
1 CCGGATAT
63460503 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:63460435 original size:80 final size:81
Alignment explanation
Indices: 63460295--63460500 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
63460285 CGGAATACAA
* * *
63460295 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
63460359 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
63460375 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
63460438 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
63460455 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
63460501 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:63462419 original size:27 final size:26
Alignment explanation
Indices: 63462375--63462426 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63462365 GGACTACCGA
* *
63462375 TTTACCCCTGGAGGGTAAAATGACTAT
1 TTTACCCCTCGAGCGT-AAATGACTAT
*
63462402 TTTACCCCTCGTGCGTAAATGACTA
1 TTTACCCCTCGAGCGTAAATGACTA
63462427 ACTTGTGTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
TTTACCCCTCGAGCGTAAATGACTAT
Found at i:63462752 original size:19 final size:19
Alignment explanation
Indices: 63462728--63462775 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
63462718 CGGTAGGCTT
63462728 AATGGGCCAAAAACGGGCC
1 AATGGGCCAAAAACGGGCC
*
63462747 AATGGGCCGAAAACGGGCC
1 AATGGGCCAAAAACGGGCC
63462766 AATGGGCCAA
1 AATGGGCCAA
63462776 CGGGCCCACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.35, C:0.25, G:0.33, T:0.06
Consensus pattern (19 bp):
AATGGGCCAAAAACGGGCC
Found at i:63468892 original size:27 final size:28
Alignment explanation
Indices: 63468836--63468905 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
63468826 AAATTTGTAC
63468836 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
63468864 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
63468891 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63468906 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:63476811 original size:27 final size:28
Alignment explanation
Indices: 63476755--63476824 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
63476745 AAATTTGTAC
63476755 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
63476783 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
63476810 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63476825 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:63484647 original size:50 final size:49
Alignment explanation
Indices: 63484525--63484713 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 49
63484515 TGAGGTCGCA
* * * * * * *
63484525 TGTGTAGTACTAAGTGCTGGCTACTATGCGTGCCCGCTAAATTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AATT-GGTCACG
* **
63484576 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* * * *
63484626 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* *
63484675 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
63484714 GCTTTCGCTA
Statistics
Matches: 116, Mismatches: 22, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
49 40 0.34
50 45 0.39
51 31 0.27
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:63487475 original size:16 final size:15
Alignment explanation
Indices: 63487437--63487475 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
63487427 TGGATTCTCG
*
63487437 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
63487452 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
63487467 TATTCTTGG
1 TA-TCTTGG
63487476 CTTCTCTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:63490021 original size:50 final size:49
Alignment explanation
Indices: 63489897--63490072 Score: 165
Period size: 50 Copynumber: 3.5 Consensus size: 49
63489887 TGAGGTCGCA
* * * * ** * *
63489897 TGTGTAGTACTAAGTGCTGGCTACTATGCGTGCCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGAT-A-TTAGGTCACG
* * *
63489948 TGTGTAGTACTAAGTGCAAGCTACTACGTGTA-TCAGATGGTTAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGAT-ATTAGGTCACG
* * * * *
63489998 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGGATATTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATATTAGGTCACG
63490047 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
63490073 TGCGTACCAG
Statistics
Matches: 102, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
49 31 0.30
50 40 0.39
51 31 0.30
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATATTAGGTCACG
Found at i:63494491 original size:25 final size:25
Alignment explanation
Indices: 63494457--63494505 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
63494447 ATTAACCAAA
63494457 CTCATACTAAACATGCCAAAATAAC
1 CTCATACTAAACATGCCAAAATAAC
63494482 CTCATACTAAACATGCCAAAATAA
1 CTCATACTAAACATGCCAAAATAA
63494506 GCCATTCCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.49, C:0.27, G:0.04, T:0.20
Consensus pattern (25 bp):
CTCATACTAAACATGCCAAAATAAC
Found at i:63495087 original size:29 final size:29
Alignment explanation
Indices: 63495047--63495120 Score: 121
Period size: 29 Copynumber: 2.6 Consensus size: 29
63495037 GATCAATTAT
*
63495047 CATGGCCTGAAGCCAAATCATCCGATATG
1 CATGGCCCGAAGCCAAATCATCCGATATG
* *
63495076 CATGTCCCGAAGCCAAATCATTCGATATG
1 CATGGCCCGAAGCCAAATCATCCGATATG
63495105 CATGGCCCGAAGCCAA
1 CATGGCCCGAAGCCAA
63495121 TTTGGTATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.19
Consensus pattern (29 bp):
CATGGCCCGAAGCCAAATCATCCGATATG
Found at i:63495962 original size:8 final size:8
Alignment explanation
Indices: 63495949--63495988 Score: 66
Period size: 8 Copynumber: 5.2 Consensus size: 8
63495939 CGAATCCGAG
63495949 TAAAAAAA
1 TAAAAAAA
63495957 T-AAAAAA
1 TAAAAAAA
63495964 T-AAAAAA
1 TAAAAAAA
63495971 TAAAAAAA
1 TAAAAAAA
63495979 TAAAAAAA
1 TAAAAAAA
63495987 TA
1 TA
63495989 TTTTTTATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 14 0.45
8 17 0.55
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (8 bp):
TAAAAAAA
Found at i:63495963 original size:7 final size:7
Alignment explanation
Indices: 63495951--63495985 Score: 61
Period size: 7 Copynumber: 4.9 Consensus size: 7
63495941 AATCCGAGTA
63495951 AAAAAAT
1 AAAAAAT
63495958 AAAAAAT
1 AAAAAAT
63495965 AAAAAAT
1 AAAAAAT
63495972 AAAAAAAT
1 -AAAAAAT
63495980 AAAAAA
1 AAAAAA
63495986 ATATTTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 20 0.74
8 7 0.26
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (7 bp):
AAAAAAT
Found at i:63495969 original size:15 final size:15
Alignment explanation
Indices: 63495949--63495988 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
63495939 CGAATCCGAG
63495949 TAAAAAAATAAAAAA
1 TAAAAAAATAAAAAA
63495964 T-AAAAAATAAAAAAA
1 TAAAAAAAT-AAAAAA
63495979 TAAAAAAATA
1 TAAAAAAATA
63495989 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 7 0.30
15 9 0.39
16 7 0.30
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (15 bp):
TAAAAAAATAAAAAA
Found at i:63500258 original size:42 final size:43
Alignment explanation
Indices: 63500154--63500292 Score: 113
Period size: 42 Copynumber: 3.2 Consensus size: 43
63500144 TGTGTTTTTG
** * * * *
63500154 TGTAAGACCACGTCTTGGACATTGGCATCAACT-TATGATTTATA
1 TGTAAGACCATATCTGGGACAGTGGCATCAA-TATTTGA-TTACA
* * * * *
63500198 TGTAAGACCATGTCTGGGACA-TCGGTATC-GTATTTGATTTCG
1 TGTAAGACCATATCTGGGACAGT-GGCATCAATATTTGATTACA
* *
63500240 TGTAAGACCCTATTTGGGACAGTGGCATCAATATTTGATTACA
1 TGTAAGACCATATCTGGGACAGTGGCATCAATATTTGATTACA
63500283 TGTAAGACCA
1 TGTAAGACCA
63500293 CGTCTGAGAC
Statistics
Matches: 75, Mismatches: 16, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
42 26 0.35
43 25 0.33
44 24 0.32
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGACAGTGGCATCAATATTTGATTACA
Found at i:63504364 original size:20 final size:20
Alignment explanation
Indices: 63504339--63504379 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
63504329 TCATTACTAG
63504339 TACTTTTAGTTCCTTTGGGT
1 TACTTTTAGTTCCTTTGGGT
63504359 TACTTTTAGTTCCTTTGGGT
1 TACTTTTAGTTCCTTTGGGT
63504379 T
1 T
63504380 CGACAATCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.10, C:0.15, G:0.20, T:0.56
Consensus pattern (20 bp):
TACTTTTAGTTCCTTTGGGT
Found at i:63507669 original size:34 final size:33
Alignment explanation
Indices: 63507613--63507677 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
63507603 GTAGCAGTAA
* *
63507613 CAGTCTGGGCCTGGGCCTATTTTAGTATCAGTGG
1 CAGTCTGGGCCTGAGCCCATTTTAGTA-CAGTGG
* *
63507647 CAGTCTGGGCTTTAGCCCATTTTAGTACAGT
1 CAGTCTGGGCCTGAGCCCATTTTAGTACAGT
63507678 ATACAAGCAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
33 4 0.15
34 23 0.85
ACGTcount: A:0.17, C:0.22, G:0.28, T:0.34
Consensus pattern (33 bp):
CAGTCTGGGCCTGAGCCCATTTTAGTACAGTGG
Found at i:63510303 original size:40 final size:40
Alignment explanation
Indices: 63510141--63510342 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
63510131 CGAATGATGT
*
63510141 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
63510181 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
63510220 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
63510258 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
63510299 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
63510339 CCGG
1 CCGG
63510343 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:63510305 original size:78 final size:79
Alignment explanation
Indices: 63510140--63510291 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
63510130 TCGAATGATG
* * *
63510140 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
63510205 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
63510220 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
63510283 GTGCAAGTC
65 GTGCAAGTC
63510292 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:63518346 original size:40 final size:40
Alignment explanation
Indices: 63518184--63518385 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
63518174 CGAATGATGT
*
63518184 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
63518224 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
63518263 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
63518301 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
63518342 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
63518382 CCGG
1 CCGG
63518386 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:63518348 original size:78 final size:79
Alignment explanation
Indices: 63518183--63518334 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
63518173 TCGAATGATG
* * *
63518183 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
63518248 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
63518263 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
63518326 GTGCAAGTC
65 GTGCAAGTC
63518335 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:63520210 original size:30 final size:30
Alignment explanation
Indices: 63520176--63520235 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
63520166 GAAAGAGAAG
63520176 GAGAAAGATGAAACTTGGCAGTAGAGCTAA
1 GAGAAAGATGAAACTTGGCAGTAGAGCTAA
63520206 GAGAAAGATGAAACTTGGCAGTAGAGCTAA
1 GAGAAAGATGAAACTTGGCAGTAGAGCTAA
63520236 TAGAGATTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.10, G:0.30, T:0.17
Consensus pattern (30 bp):
GAGAAAGATGAAACTTGGCAGTAGAGCTAA
Found at i:63526743 original size:27 final size:27
Alignment explanation
Indices: 63526706--63526845 Score: 167
Period size: 27 Copynumber: 5.2 Consensus size: 27
63526696 AGCATGGCTG
* *
63526706 CCAGA-ACAGATATTGTGACAGAGTCA
1 CCAGATACAGATATTGTGGCAGAGCCA
** *
63526732 CCAGATACAGATATTGTGATAGAGTCA
1 CCAGATACAGATATTGTGGCAGAGCCA
*
63526759 CCAGATACAGATATTGTGGTAGAGCCA
1 CCAGATACAGATATTGTGGCAGAGCCA
* * *
63526786 CCAGAAACAAATATTTGTGGCAAAGCCA
1 CCAGATACAGATA-TTGTGGCAGAGCCA
63526814 CCAGAT-CAGATAATTGTGGCAGAGCCA
1 CCAGATACAGAT-ATTGTGGCAGAGCCA
63526841 CCAGA
1 CCAGA
63526846 ACGCTTCCTC
Statistics
Matches: 101, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
26 5 0.05
27 78 0.77
28 18 0.18
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
CCAGATACAGATATTGTGGCAGAGCCA
Found at i:63526788 original size:54 final size:55
Alignment explanation
Indices: 63526706--63526846 Score: 171
Period size: 55 Copynumber: 2.6 Consensus size: 55
63526696 AGCATGGCTG
* * * * * * *
63526706 CCAGA-ACAGATATTGTGACAGAGTCACCAGATACAGATA-TTGTGATAGAGTCA
1 CCAGATACAGATATTGTGGCAGAGCCACCAGAAACAAATATTTGTGACAAAGCCA
* *
63526759 CCAGATACAGATATTGTGGTAGAGCCACCAGAAACAAATATTTGTGGCAAAGCCA
1 CCAGATACAGATATTGTGGCAGAGCCACCAGAAACAAATATTTGTGACAAAGCCA
63526814 CCAGAT-CAGATAATTGTGGCAGAGCCACCAGAA
1 CCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
63526847 CGCTTCCTCC
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
53 5 0.07
54 34 0.45
55 36 0.48
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.20
Consensus pattern (55 bp):
CCAGATACAGATATTGTGGCAGAGCCACCAGAAACAAATATTTGTGACAAAGCCA
Found at i:63530783 original size:28 final size:27
Alignment explanation
Indices: 63530704--63530817 Score: 142
Period size: 27 Copynumber: 4.2 Consensus size: 27
63530694 AGCATGGCTG
* *
63530704 CCAG-AACAGATATTGTGACAGAGTCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
* *
63530730 CCAGATACAGATATTGTGGTAGAGCCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
63530757 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATA-TTGTGGCAGAGCCA
* *
63530785 CCAG-ATCAGATAATTGTAGCAGAGCCA
1 CCAGAAACAGAT-ATTGTGGCAGAGCCA
63530812 CCAGAA
1 CCAGAA
63530818 TGCTTCCTCC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 4 0.05
27 53 0.70
28 19 0.25
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAAACAGATATTGTGGCAGAGCCA
Found at i:63530787 original size:55 final size:54
Alignment explanation
Indices: 63530704--63530817 Score: 160
Period size: 55 Copynumber: 2.1 Consensus size: 54
63530694 AGCATGGCTG
* * *
63530704 CCAG-AACAGATATTGTGACAGAGTCACCAGATACAGAT-ATTGTGGTAGAGCCA
1 CCAGAAACAGATATTGTGACAGAGCCACCAGAT-CAGATAATTGTAGCAGAGCCA
*
63530757 CCAGAAACAGATATTTGTGGCAGAGCCACCAGATCAGATAATTGTAGCAGAGCCA
1 CCAGAAACAGATA-TTGTGACAGAGCCACCAGATCAGATAATTGTAGCAGAGCCA
63530812 CCAGAA
1 CCAGAA
63530818 TGCTTCCTCC
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
53 4 0.07
54 13 0.24
55 37 0.69
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAAACAGATATTGTGACAGAGCCACCAGATCAGATAATTGTAGCAGAGCCA
Found at i:63533594 original size:42 final size:42
Alignment explanation
Indices: 63533568--63533648 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
63533558 ACGATGTCCT
* *
63533568 GTATCAATGCCATGTCCCAGACATGGTGTTACACAAAATCTA
1 GTATCAATGCCATATCCCAGACATGGTCTTACACAAAATCTA
* *
63533610 GTATCGATGCCATATCCCAGATATGGTCTTACACAAAAT
1 GTATCAATGCCATATCCCAGACATGGTCTTACACAAAAT
63533649 TGCACATAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27
Consensus pattern (42 bp):
GTATCAATGCCATATCCCAGACATGGTCTTACACAAAATCTA
Found at i:63536082 original size:2 final size:2
Alignment explanation
Indices: 63536075--63536100 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
63536065 CGTCATTAAC
63536075 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
63536101 TGCCGAATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63537878 original size:48 final size:48
Alignment explanation
Indices: 63537819--63538336 Score: 829
Period size: 48 Copynumber: 10.8 Consensus size: 48
63537809 ATATGTGTGT
*
63537819 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATACGA
1 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGA
*
63537867 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATACGA
1 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGA
* *
63537915 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGA
* *
63537963 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGA
* *
63538011 GAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATACGA
1 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGA
* *
63538059 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGA
* * * * *
63538107 GATATGTATATGTGGTAAAGCCGAATGACTAATGTGAAATGTATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGA
* * *
63538155 GAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGA
*
63538203 GAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGA
* *
63538251 GATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGA
* *
63538299 GATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
63538337 GGTTGTAACA
Statistics
Matches: 444, Mismatches: 26, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 444 1.00
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.29
Consensus pattern (48 bp):
GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGA
Found at i:63538157 original size:13 final size:13
Alignment explanation
Indices: 63538138--63538168 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
63538128 CGAATGACTA
63538138 ATGTGAAATGTAT
1 ATGTGAAATGTAT
*
63538151 GTGTGAAATGTAT
1 ATGTGAAATGTAT
63538164 ATGTG
1 ATGTG
63538169 GTAAAGCCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.29, T:0.39
Consensus pattern (13 bp):
ATGTGAAATGTAT
Found at i:63540597 original size:27 final size:27
Alignment explanation
Indices: 63540557--63540668 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
63540547 AGGAAGCGTC
*
63540557 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
63540584 CTGGTGGCTCTGCCACAAATATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
63540611 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
63540639 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
63540665 CTGG
1 CTGG
63540669 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:63540661 original size:54 final size:54
Alignment explanation
Indices: 63540557--63540668 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
63540547 AGGAAGCGTC
*
63540557 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACAAATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAAATATCTGTT
* * * *
63540611 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACAAATATCTGTT
63540665 CTGG
1 CTGG
63540669 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 36 0.69
55 16 0.31
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAAATATCTGTT
Found at i:63547118 original size:10 final size:10
Alignment explanation
Indices: 63547105--63547129 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
63547095 TTCTTGACCA
63547105 TTCTTTATTT
1 TTCTTTATTT
63547115 TTCTTTATTT
1 TTCTTTATTT
63547125 TTCTT
1 TTCTT
63547130 CTTTTTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (10 bp):
TTCTTTATTT
Found at i:63548418 original size:27 final size:26
Alignment explanation
Indices: 63548378--63548489 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
63548368 AGGAAGCATC
* *
63548378 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCAC-ATTATCTGAT
*
63548405 CTGGTGACTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACAT-TATCTGAT
* *
63548432 CTGATGGCTCTGCCACGATTATCTGTAT
1 CTGGTGACTCTGCCAC-ATTATCTG-AT
* *
63548460 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGACTCTGCCACATTATCTGAT
63548486 CTGG
1 CTGG
63548490 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.68
28 16 0.22
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (26 bp):
CTGGTGACTCTGCCACATTATCTGAT
Found at i:63548482 original size:54 final size:54
Alignment explanation
Indices: 63548382--63548488 Score: 171
Period size: 54 Copynumber: 2.0 Consensus size: 54
63548372 AGCATCCTGG
63548382 TGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTGA
1 TGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTGA
* * *
63548436 TGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTCTG
1 TGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTTCTG
63548489 GCAGCCATGC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
54 30 0.61
55 19 0.39
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (54 bp):
TGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTGA
Found at i:63553582 original size:20 final size:18
Alignment explanation
Indices: 63553547--63553594 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 18
63553537 ACCTTTTTGC
63553547 AAAATGTGTAAAATAAGTGGTA
1 AAAATGTG--AAATAA-TGG-A
*
63553569 GAAATGTGAAATAATGGA
1 AAAATGTGAAATAATGGA
63553587 AAAATGTG
1 AAAATGTG
63553595 GGCTTCTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 8 0.33
19 3 0.12
20 6 0.25
22 7 0.29
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (18 bp):
AAAATGTGAAATAATGGA
Found at i:63558030 original size:39 final size:39
Alignment explanation
Indices: 63557976--63558119 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
63557966 GAATGTTCGA
63557976 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
63558015 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
63558054 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
63558093 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
63558120 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:63558066 original size:78 final size:79
Alignment explanation
Indices: 63557977--63558147 Score: 263
Period size: 78 Copynumber: 2.2 Consensus size: 79
63557967 AATGTTCGAG
63557977 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
63558041 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
63558055 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
63558120 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** *
63558134 CCATAACCGGGCTA
1 TGATATCCGGGCTA
63558148 TGTCCTGAAG
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
78 53 0.63
79 31 0.37
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:63565695 original size:24 final size:24
Alignment explanation
Indices: 63565667--63565815 Score: 163
Period size: 24 Copynumber: 5.9 Consensus size: 24
63565657 TGGCGTTGTG
* *
63565667 CTAAGTGAAATAAGACCAAGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
*
63565691 CTAAGTGAAATGAGTCCATGGCAATGT
1 CTAAGTGAAATAAGTCCATGGC-A--T
* *
63565718 GCTAAGTGAAATAAGACCATGACAT
1 -CTAAGTGAAATAAGTCCATGGCAT
*
63565743 CTAAGTGGAATAAGTCCATGGCAATGT
1 CTAAGTGAAATAAGTCCATGGC-A--T
*
63565770 GCTAAGTGAAATAATTCCATGGCAT
1 -CTAAGTGAAATAAGTCCATGGCAT
63565795 CTAAGTGAAATAAGTCCATGG
1 CTAAGTGAAATAAGTCCATGG
63565816 GATGGTGCTA
Statistics
Matches: 105, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
24 58 0.55
25 4 0.04
27 4 0.04
28 39 0.37
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (24 bp):
CTAAGTGAAATAAGTCCATGGCAT
Found at i:63565727 original size:52 final size:52
Alignment explanation
Indices: 63565663--63565830 Score: 257
Period size: 52 Copynumber: 3.2 Consensus size: 52
63565653 GATATGGCGT
* *
63565663 TGTGCTAAGTGAAATAAGACCAAGGCATCTAAGTGAAATGAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
* *
63565715 TGTGCTAAGTGAAATAAGACCATGACATCTAAGTGGAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
** *
63565767 TGTGCTAAGTGAAATAATTCCATGGCATCTAAGTGAAATAAGTCCATGG-GA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
63565818 TGGTGCTAAGTGA
1 T-GTGCTAAGTGA
63565831 GCAATTTCCC
Statistics
Matches: 106, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
51 2 0.02
52 104 0.98
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.24
Consensus pattern (52 bp):
TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
Found at i:63565920 original size:51 final size:51
Alignment explanation
Indices: 63565857--63566052 Score: 288
Period size: 51 Copynumber: 3.8 Consensus size: 51
63565847 ACCTTAGGAG
* * *
63565857 TAAAATAGCTTTGGACACAAGTGTGTTACTATGTGAAAGCAACTTTGTGAA
1 TAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAA
* *
63565908 TATAATAGCTTTGGACACAAGTGTGGTACT-TAGTGAAGGCCACTTTATGAA
1 TAAAATAGCTTTGGACACAAGTGTGGTACTAT-GTGAAGGCCACTTTGTGAA
*
63565959 TAAAATAGCTTTGGACACAAGTGTGGTATTATGTGAAGGCCACTTTGTGAA
1 TAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAA
* *
63566010 TAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGTCCAC
1 TAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
63566053 CGTGTATTCG
Statistics
Matches: 131, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
50 2 0.02
51 128 0.98
52 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (51 bp):
TAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAA
Found at i:63571953 original size:28 final size:27
Alignment explanation
Indices: 63571884--63571999 Score: 136
Period size: 24 Copynumber: 4.4 Consensus size: 27
63571874 GATATGACAT
63571884 TGTGCTAAGTGAAATAAGACCATGGCA
1 TGTGCTAAGTGAAATAAGACCATGGCA
*
63571911 --T-CTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGACCATGGC-A
* *
63571936 TGTGTTAAGTGAAATAAGACTATGGCA
1 TGTGCTAAGTGAAATAAGACCATGGCA
*
63571963 --T-CTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGACCATGGCA
63571987 TGGTGCTAAGTGA
1 T-GTGCTAAGTGA
63572000 GAAATTTCTG
Statistics
Matches: 74, Mismatches: 7, Indels: 15
0.77 0.07 0.16
Matches are distributed among these distances:
24 41 0.55
25 3 0.04
27 3 0.04
28 27 0.36
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGACCATGGCA
Found at i:63571967 original size:52 final size:51
Alignment explanation
Indices: 63571884--63571999 Score: 196
Period size: 52 Copynumber: 2.2 Consensus size: 51
63571874 GATATGACAT
63571884 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGC-A
* *
63571936 TGTGTTAAGTGAAATAAGACTATGGCATCTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCA
63571987 TGGTGCTAAGTGA
1 T-GTGCTAAGTGA
63572000 GAAATTTCTG
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
51 2 0.03
52 58 0.97
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (51 bp):
TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCA
Found at i:63572078 original size:51 final size:51
Alignment explanation
Indices: 63572023--63572221 Score: 301
Period size: 51 Copynumber: 3.9 Consensus size: 51
63572013 TGAACCTTAG
* **
63572023 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGATGGAAACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * * *
63572074 GAATATAATAGCTTTAGACATAAGTGTGGTACTATGTGAAGGCCACTTTAT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
63572125 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATATGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
63572176 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
63572222 CGTGTATCCA
Statistics
Matches: 133, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
50 1 0.01
51 132 0.99
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:63575649 original size:46 final size:46
Alignment explanation
Indices: 63575596--63575771 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
63575586 TATTTGGGCA
63575596 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
63575642 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
63575689 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
63575735 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63575772 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:63575751 original size:93 final size:93
Alignment explanation
Indices: 63575592--63575763 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
63575582 GGGATATTTG
* *
63575592 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
63575657 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
63575685 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
63575750 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
63575764 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:63578759 original size:15 final size:15
Alignment explanation
Indices: 63578720--63578798 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
63578710 GTATCTTGGG
*
63578720 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
63578735 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
63578750 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
63578764 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
63578779 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
63578793 TTTCTT
1 TTTCTT
63578799 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:63578783 original size:29 final size:29
Alignment explanation
Indices: 63578711--63578797 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
63578701 CATAGTATCG
* * * *
63578711 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
63578741 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
63578770 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
63578798 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:63581229 original size:46 final size:46
Alignment explanation
Indices: 63581176--63581351 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
63581166 TATTTGGGCA
63581176 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
63581222 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
63581269 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
63581315 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63581352 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:63581331 original size:93 final size:93
Alignment explanation
Indices: 63581172--63581343 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
63581162 GGGATATTTG
* *
63581172 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
63581237 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
63581265 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
63581330 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
63581344 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:63587485 original size:34 final size:34
Alignment explanation
Indices: 63587447--63587517 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
63587437 TGACTCCAAA
63587447 AGTTAGTGAAGTAGATGTGTCTGACTAGACTAAC
1 AGTTAGTGAAGTAGATGTGTCTGACTAGACTAAC
63587481 AGTTAGTGAAGTAGATGTGTCTGACTAGACTAAC
1 AGTTAGTGAAGTAGATGTGTCTGACTAGACTAAC
63587515 AGT
1 AGT
63587518 ACATTGGACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.30
Consensus pattern (34 bp):
AGTTAGTGAAGTAGATGTGTCTGACTAGACTAAC
Found at i:63592060 original size:46 final size:45
Alignment explanation
Indices: 63592007--63592179 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 45
63591997 ATTTGTGTGT
63592007 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATG-A
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTA-GAA
*
63592053 GAGCTAGTGTAAGACCATTTCTGGGACATGGCATCGG--CATTGAGACAA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT-AG--AA
* *
63592101 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTA-GAA
*
63592148 -AGCCAGTGTAAGACATGTCTGGGACATGCATC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC
63592180 TGCTATGAGA
Statistics
Matches: 112, Mismatches: 5, Indels: 20
0.82 0.04 0.15
Matches are distributed among these distances:
45 5 0.04
46 53 0.47
47 27 0.24
48 23 0.21
49 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAGAA
Found at i:63592123 original size:47 final size:46
Alignment explanation
Indices: 63592007--63592276 Score: 235
Period size: 47 Copynumber: 5.8 Consensus size: 46
63591997 ATTTGTGTGT
*** * **
63592007 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTTGA-GACAA
*
63592053 GAGCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCATTGAGACAA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-TTGAGACAA
* * *
63592101 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCATGACGTA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTTGA-GAC-AA
* * **
63592148 -AGCCAGTGTAAGA-CATGTCTGGGACATGCATCTGCTATGAGATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCT-TGAGACAA
* * * * * *
63592193 TAG-TCAGTGTAAGACCATGTTTGAGACATGGCATCGACTTGAGATAT
1 GAGCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGGCTTGAGACAA
*
63592240 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGG
63592277 AACCTTACCC
Statistics
Matches: 184, Mismatches: 29, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
45 3 0.02
46 71 0.39
47 78 0.42
48 31 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTTGAGACAA
Found at i:63592227 original size:94 final size:94
Alignment explanation
Indices: 63592007--63592276 Score: 309
Period size: 94 Copynumber: 2.9 Consensus size: 94
63591997 ATTTGTGTGT
* * *
63592007 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATG-AGAGCTAGTGTAAGACCAT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATGATGTA-AGCCAGTGTAAGACCAT
*
63592071 TTCTGGGACATGGCATCGGCATTGAGACAA
65 GTCTGGGACATGGCATCGGCATTGAGACAA
*
63592101 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATGACGTAAGCCAGTGTAAGA-CATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATGATGTAAGCCAGTGTAAGACCATG
* **
63592165 TCTGGGACAT-GCATCTGC-TATGAGATGA
66 TCTGGGACATGGCATCGGCAT-TGAGACAA
* * * * * * * *
63592193 TAG-TCAGTGTAAGACCATGTTTGAGACATGGCATCGACTTGA-GATATGAGCCAGTGTAAGACC
1 GAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCATGATGTAAGCCAGTGTAAGACC
63592256 ATGTCTGGGACATGGCATCGG
63 ATGTCTGGGACATGGCATCGG
63592277 AACCTTACCC
Statistics
Matches: 151, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
91 2 0.01
92 24 0.16
93 41 0.27
94 77 0.51
95 7 0.05
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (94 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATGATGTAAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCGGCATTGAGACAA
Found at i:63592259 original size:140 final size:141
Alignment explanation
Indices: 63592012--63592276 Score: 369
Period size: 140 Copynumber: 1.9 Consensus size: 141
63592002 TGTGTGAGCT
* *
63592012 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATTTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATTTCTGA
* *
63592077 GACATGGCATCGGCATTGAGACAAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCA
66 GACATGGCATCGACATTGAGACAAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCA
63592141 TGACGTAAGCC
131 TGACGTAAGCC
* * * *
63592152 AGTGTAAGACATGTCTGGGACATGCATCTGCTATGA-GATGATAG-TCAGTGTAAGACCATGTT-
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-CATGATGAGAGCT-AGTGTAAGACCAT-TTC
* *
63592214 TGAGACATGGCATCGAC-TTGAGATATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
63 TGAGACATGGCATCGACATTGAGACAAGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGG
63592277 AACCTTACCC
Statistics
Matches: 110, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
139 21 0.19
140 79 0.72
141 10 0.09
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATTTCTGA
GACATGGCATCGACATTGAGACAAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCA
TGACGTAAGCC
Found at i:63595110 original size:21 final size:21
Alignment explanation
Indices: 63595086--63595127 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
63595076 GATACATGGT
63595086 AAAAGGTATCAATACTTTTTG
1 AAAAGGTATCAATACTTTTTG
* * *
63595107 AAAAGGTGTCGATATTTTTTG
1 AAAAGGTATCAATACTTTTTG
63595128 TGATTGTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.40
Consensus pattern (21 bp):
AAAAGGTATCAATACTTTTTG
Found at i:63598311 original size:27 final size:27
Alignment explanation
Indices: 63598271--63598382 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
63598261 AGGAAGCTTC
*
63598271 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
63598298 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
63598325 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
63598353 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
63598379 CTGG
1 CTGG
63598383 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.65
28 18 0.24
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:63598377 original size:54 final size:54
Alignment explanation
Indices: 63598271--63598382 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
63598261 AGGAAGCTTC
* *
63598271 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
63598325 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
63598379 CTGG
1 CTGG
63598383 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:63599437 original size:24 final size:24
Alignment explanation
Indices: 63599410--63599507 Score: 90
Period size: 24 Copynumber: 4.0 Consensus size: 24
63599400 TCATTAGGGA
*
63599410 TTACTGATTTTAGCTCATATGAGC
1 TTACCGATTTTAGCTCATATGAGC
* **
63599434 TTACCGATTTCAGCTTGTATGAGC
1 TTACCGATTTTAGCTCATATGAGC
*
63599458 TTACCAATTTATAGCTCATGA-GAGC
1 TTACCGATTT-TAGCTCAT-ATGAGC
* * *
63599483 ATACCGATTCATAGCTCGTATGAGC
1 TTACCGATT-TTAGCTCATATGAGC
63599508 ATACATGTAT
Statistics
Matches: 58, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
24 30 0.52
25 27 0.47
26 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (24 bp):
TTACCGATTTTAGCTCATATGAGC
Found at i:63599507 original size:25 final size:24
Alignment explanation
Indices: 63599415--63599511 Score: 81
Period size: 25 Copynumber: 4.0 Consensus size: 24
63599405 AGGGATTACT
* *
63599415 GATTTTAGCTCATATGAGCTTACC
1 GATTATAGCTCATATGAGCATACC
** *
63599439 GATT-TCAGCTTGTATGAGCTTACC
1 GATTAT-AGCTCATATGAGCATACC
*
63599463 AATTTATAGCTCATGA-GAGCATACC
1 GA-TTATAGCTCAT-ATGAGCATACC
*
63599488 GATTCATAGCTCGTATGAGCATAC
1 GATT-ATAGCTCATATGAGCATAC
63599512 ATGTATAGGA
Statistics
Matches: 59, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
23 1 0.02
24 24 0.41
25 32 0.54
26 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (24 bp):
GATTATAGCTCATATGAGCATACC
Found at i:63602436 original size:6 final size:6
Alignment explanation
Indices: 63602418--63602530 Score: 58
Period size: 6 Copynumber: 18.3 Consensus size: 6
63602408 AAGAAACATT
* *
63602418 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
63602467 ATCAGT ATCAGGTA A-CAGA ATCA-A AGTCAGA AT-AGGT ATCAGGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA A-TCAGA ATCA-GA ATCA-G-A
*
63602512 A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
63602531 GTGAATGCAA
Statistics
Matches: 83, Mismatches: 10, Indels: 28
0.69 0.08 0.23
Matches are distributed among these distances:
5 9 0.11
6 58 0.70
7 13 0.16
8 3 0.04
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:63602463 original size:25 final size:25
Alignment explanation
Indices: 63602432--63602504 Score: 96
Period size: 25 Copynumber: 3.0 Consensus size: 25
63602422 GAACTAGAAT
*
63602432 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATTAGGTAA
* *
63602457 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATTAGGTAA
63602482 CAGAATCA-AAGTCAGAA-TAGGTA
1 CAGAATCAGAA-TCAGAATTAGGTA
63602505 TCAGGTAACA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
24 7 0.17
25 35 0.83
ACGTcount: A:0.45, C:0.14, G:0.22, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATTAGGTAA
Found at i:63602497 original size:31 final size:31
Alignment explanation
Indices: 63602460--63602530 Score: 117
Period size: 31 Copynumber: 2.3 Consensus size: 31
63602450 TAGGTGACAG
63602460 AATCAGAATCA-GTATCAGGTAACAGAATCAA
1 AATCAGAAT-AGGTATCAGGTAACAGAATCAA
*
63602491 AGTCAGAATAGGTATCAGGTAACAGAATCAA
1 AATCAGAATAGGTATCAGGTAACAGAATCAA
63602522 AATCAGAAT
1 AATCAGAAT
63602531 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 1 0.03
31 36 0.97
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (31 bp):
AATCAGAATAGGTATCAGGTAACAGAATCAA
Found at i:63602951 original size:27 final size:27
Alignment explanation
Indices: 63602890--63602951 Score: 63
Period size: 26 Copynumber: 2.3 Consensus size: 27
63602880 AGTCACTTGG
*
63602890 CCACAAGGGCAAAATAGTCATTTAACA
1 CCACAAGGGCAAAATAGTAATTTAACA
** * * *
63602917 CC-TTAGGGCAAAATGGTAATTTTACC
1 CCACAAGGGCAAAATAGTAATTTAACA
63602943 CCACAAGGG
1 CCACAAGGG
63602952 TATCTCGGTA
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.21
Consensus pattern (27 bp):
CCACAAGGGCAAAATAGTAATTTAACA
Found at i:63602961 original size:27 final size:27
Alignment explanation
Indices: 63602931--63603579 Score: 951
Period size: 27 Copynumber: 24.0 Consensus size: 27
63602921 AGGGCAAAAT
* * * *
63602931 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
63602958 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
63602985 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63603012 GGTCATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63603039 GGTAATTATACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
63603066 GGTTATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
63603093 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
63603120 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
63603147 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
63603174 AGTAATTCTACCATACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
63603201 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
63603228 GGTTATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
63603255 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
63603282 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
63603309 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
63603336 AGTAATTCTACCATACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
63603363 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
63603390 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63603417 GGTCATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
63603444 GGTAATTCTACCCTACAAAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
63603471 GGTAA-T-TACACAAAGTAGGGGTATTTC
1 GGTAATTCTAC-CCTA-CAGGGGTATTTC
* *
63603498 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63603525 GGTCATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
63603552 GGTAATTCTACCCTACAAAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
63603579 G
1 G
63603580 CTAGTTACAC
Statistics
Matches: 554, Mismatches: 64, Indels: 8
0.88 0.10 0.01
Matches are distributed among these distances:
25 3 0.01
26 3 0.01
27 542 0.98
28 3 0.01
29 3 0.01
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:63603707 original size:27 final size:27
Alignment explanation
Indices: 63603597--63603997 Score: 150
Period size: 27 Copynumber: 14.9 Consensus size: 27
63603587 CACAAAGTAG
** * *
63603597 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTTTAAATCGA
* *
63603624 TGGTATTTTGGTAATTTTATT-GATCGA
1 GGGTATTTTGGTAATTTT-TTAAATCGA
* * *
63603651 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTTTAAATCGA
* * *
63603678 GGGTATTTTAGTAATTTTTTACATTGA
1 GGGTATTTTGGTAATTTTTTAAATCGA
*** * *
63603705 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTTTAAATCGA
**** * *
63603732 GGGTAAGACGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTTTAAATCGA
*** * * *
63603759 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTTTAAATCGA
**** * * *
63603786 GGGTAAAACGATAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTTTAAATCGA
***
63603813 GGGTAAAATGGTAATTCTATCTT--A-C-A
1 GGGTATTTTGGTAATT-T-T-TTAAATCGA
* **
63603839 GGAGTATTTTAGTAATTTTACAAATCGA
1 GG-GTATTTTGGTAATTTTTTAAATCGA
** **
63603867 GGGTATTTCAGTAATTTTGCAAA-CTGA
1 GGGTATTTTGGTAATTTTTTAAATC-GA
**
63603894 GGGTATTTCT-GTAATTTTACAAATCGA
1 GGGTATTT-TGGTAATTTTTTAAATCGA
* * * *
63603921 GGATATTTGGGTAATTTTATAAATCGG
1 GGGTATTTTGGTAATTTTTTAAATCGA
* ** * *
63603948 GGGTACTTTGGTAATTTTACAAGTTGA
1 GGGTATTTTGGTAATTTTTTAAATCGA
** *
63603975 GGGTATTTCAGTAATTTTGTAAA
1 GGGTATTTTGGTAATTTTTTAAA
63603998 CTAAAGTATT
Statistics
Matches: 293, Mismatches: 67, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
25 1 0.00
26 7 0.02
27 278 0.95
28 5 0.02
29 1 0.00
30 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTTTAAATCGA
Found at i:63603735 original size:54 final size:54
Alignment explanation
Indices: 63603703--63603832 Score: 217
Period size: 54 Copynumber: 2.4 Consensus size: 54
63603693 TTTTTACATT
*
63603703 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAGACGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAGACAGTAATTCTGTAAATC
* *
63603757 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC-GATAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAGACAG-TAATTCTGTAAATC
63603811 GAGGGTAAAATGGTAATTCTAT
1 GAGGGTAAAATGGTAATTCTAT
63603833 CTTACAGGAG
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
53 1 0.01
54 71 0.99
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.28
Consensus pattern (54 bp):
GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAGACAGTAATTCTGTAAATC
Found at i:63603852 original size:81 final size:81
Alignment explanation
Indices: 63603677--63603871 Score: 214
Period size: 81 Copynumber: 2.4 Consensus size: 81
63603667 TTGTAAACCA
* * * * * *
63603677 AGGGTATTTTAGTAATTTTTTACATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAGACG
1 AGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACG
*
63603742 GTAATTCTGTAAATCG
66 GTAATTCTATAAATCG
*** * * *
63603758 AGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATG
1 AGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACG
**
63603823 GTAATTCTAT-CTTAC-
66 GTAATTCTATAAAT-CG
*
63603838 AGGAGTATTTTAGTAATTTTACAAATCGAGGGTA
1 AGG-GTATTTTAGTAATTTTATAAATCGAGGGTA
63603872 TTTCAGTAAT
Statistics
Matches: 92, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
80 4 0.04
81 88 0.96
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.33
Consensus pattern (81 bp):
AGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACG
GTAATTCTATAAATCG
Found at i:63603908 original size:81 final size:81
Alignment explanation
Indices: 63603838--63603990 Score: 191
Period size: 81 Copynumber: 1.9 Consensus size: 81
63603828 TCTATCTTAC
* *
63603838 AGGAGTATTTTAGTAATTTTACAAATCGAGGGTA-TTTCAGTAATTTTGCAAACTGAGGGTATTT
1 AGGA-TATTTGAGTAATTTTACAAATCGAGGGTACTTT-AGTAATTTTACAAACTGAGGGTATTT
* *
63603902 CTGTAATTTTACAAATCG
64 CAGTAATTCTACAAATCG
* * * * **
63603920 AGGATATTTGGGTAATTTTATAAATCGGGGGTACTTTGGTAATTTTACAAGTTGAGGGTATTTCA
1 AGGATATTTGAGTAATTTTACAAATCGAGGGTACTTTAGTAATTTTACAAACTGAGGGTATTTCA
63603985 GTAATT
66 GTAATT
63603991 TTGTAAACTA
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 54 0.89
82 7 0.11
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (81 bp):
AGGATATTTGAGTAATTTTACAAATCGAGGGTACTTTAGTAATTTTACAAACTGAGGGTATTTCA
GTAATTCTACAAATCG
Done.