Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 205 of 325
Found at i:63603992 original size:54 final size:54
Alignment explanation
Indices: 63603850--63603999 Score: 187
Period size: 54 Copynumber: 2.8 Consensus size: 54
63603840 GAGTATTTTA
* *
63603850 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCT
1 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGTAAACTGAGGGTATTTCG
* ** * *
63603904 GTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAA-TCGGGGGTACTTT-G
1 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGTAAACT-GAGGGTA-TTTCG
* *
63603958 GTAATTTTACAAGTTGAGGGTATTTCAGTAATTTTGTAAACT
1 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGTAAACT
63604000 AAAGTATTCT
Statistics
Matches: 80, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
53 1 0.01
54 75 0.94
55 4 0.05
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGTAAACTGAGGGTATTTCG
Found at i:63609201 original size:15 final size:16
Alignment explanation
Indices: 63609183--63609220 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
63609173 AATTGGAAAG
63609183 ATGAAAAGTTAA-TAA
1 ATGAAAAGTTAATTAA
* *
63609198 ATGACAATTTAATTAA
1 ATGAAAAGTTAATTAA
63609214 ATGAAAA
1 ATGAAAA
63609221 ACAAAACAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.58, C:0.03, G:0.11, T:0.29
Consensus pattern (16 bp):
ATGAAAAGTTAATTAA
Found at i:63611477 original size:105 final size:105
Alignment explanation
Indices: 63611289--63611478 Score: 256
Period size: 105 Copynumber: 1.8 Consensus size: 105
63611279 TATGTTAATG
* * * * *
63611289 AGCTATAGAGGCATTAGTGGCATTTTACTTAAAACGCTGCAATATATCAGAATTAGCGGGGCTTC
1 AGCTACAGAGGCATTAGTGGCATTTTACTAAAAACGCCGCAATATATAAGAATTAGCGGCGCTTC
* **
63611354 TTTAAAAATGCCGTAAAAGTCTTGAGAGAAACGACGACGT
66 TTAAAAAATGCCACAAAAGTCTTGAGAGAAACGACGACGT
* * *
63611394 AGCTACAGAGGCATTAGTGGCGTTTTACTAAAAACGCCGCAATATATAAGAATTATCGGCTCTTC
1 AGCTACAGAGGCATTAGTGGCATTTTACTAAAAACGCCGCAATATATAAGAATTAGCGGCGCTTC
*
63611459 TATAAAAAAT-CTACAAAAGT
66 T-TAAAAAATGCCACAAAAGT
63611479 GACTATAGAG
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
105 65 0.90
106 7 0.10
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (105 bp):
AGCTACAGAGGCATTAGTGGCATTTTACTAAAAACGCCGCAATATATAAGAATTAGCGGCGCTTC
TTAAAAAATGCCACAAAAGTCTTGAGAGAAACGACGACGT
Found at i:63611681 original size:39 final size:40
Alignment explanation
Indices: 63611607--63611691 Score: 93
Period size: 39 Copynumber: 2.1 Consensus size: 40
63611597 ATATAGAGGC
* ** * *
63611607 ATTAGTGGCGTTTTATGTAAAATGCCGTAATATGTT-AGA
1 ATTAGCGGCGTTTTATGTAAAACACCGCAAAATGTTAAGA
*
63611646 ATTAGCGGCGTTTGT-TGTAAAACACCGCAAAATGTTAATA
1 ATTAGCGGCGTTT-TATGTAAAACACCGCAAAATGTTAAGA
63611686 ATTAGC
1 ATTAGC
63611692 ATTTAGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
39 29 0.76
40 9 0.24
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (40 bp):
ATTAGCGGCGTTTTATGTAAAACACCGCAAAATGTTAAGA
Found at i:63612602 original size:3 final size:3
Alignment explanation
Indices: 63612594--63612619 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
63612584 CTCTTCTCTG
63612594 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
63612620 GTTTTCCCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:63614086 original size:32 final size:33
Alignment explanation
Indices: 63614050--63614120 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 33
63614040 CCCACAACGC
*
63614050 TACTGTATAGGGCGAAGGCC-AGACTGTACTGT
1 TACTGTATAGGGCGAAGGCCTAGACTGTACTGA
* ***
63614082 TACTGAATAGGGCTTTGGCCTAGACTGTACTGA
1 TACTGTATAGGGCGAAGGCCTAGACTGTACTGA
63614115 TACTGT
1 TACTGT
63614121 GTTATTTACT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
32 16 0.50
33 16 0.50
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (33 bp):
TACTGTATAGGGCGAAGGCCTAGACTGTACTGA
Found at i:63619196 original size:16 final size:16
Alignment explanation
Indices: 63619171--63619203 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
63619161 CAGATATTGG
*
63619171 AGCGTGATGTTAAGGT
1 AGCGTCATGTTAAGGT
63619187 AGCGTCATGTTAAGGT
1 AGCGTCATGTTAAGGT
63619203 A
1 A
63619204 TTGAGGAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.09, G:0.33, T:0.30
Consensus pattern (16 bp):
AGCGTCATGTTAAGGT
Found at i:63621703 original size:32 final size:33
Alignment explanation
Indices: 63621667--63621737 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
63621657 TCCACAATGC
*
63621667 TACTGTATAGGGCTAAGG-CCAGACTGTACTGT
1 TACTGTATAGGGCTAAGGCCCAGACTGTACTGA
* **
63621699 TACTGAATAGGGCTTTGGCCCAGACTGTACTGA
1 TACTGTATAGGGCTAAGGCCCAGACTGTACTGA
63621732 TACTGT
1 TACTGT
63621738 GTTGTTTACT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
32 15 0.45
33 18 0.55
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (33 bp):
TACTGTATAGGGCTAAGGCCCAGACTGTACTGA
Found at i:63629601 original size:33 final size:32
Alignment explanation
Indices: 63629538--63629607 Score: 77
Period size: 33 Copynumber: 2.2 Consensus size: 32
63629528 TCCACAATGC
* *
63629538 TACTGTATAGGGCTAAGGCCAGACAATACTGT
1 TACTGAATAGGGCTAAGGCCAGACAATACTGA
** **
63629570 TACTGAATAGGGCTTTGGCCCAGACTGTACTGA
1 TACTGAATAGGGCTAAGG-CCAGACAATACTGA
63629603 TACTG
1 TACTG
63629608 TGTTGTTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
32 15 0.48
33 16 0.52
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (32 bp):
TACTGAATAGGGCTAAGGCCAGACAATACTGA
Found at i:63642480 original size:39 final size:41
Alignment explanation
Indices: 63642426--63642560 Score: 188
Period size: 40 Copynumber: 3.4 Consensus size: 41
63642416 AACCCAAGTA
* * *
63642426 CCTTCGGGATTTAG-CCGGATGTAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
* *
63642465 CCTTCGGGTCTTAGCCCGGATATAGTCAA-TAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
*
63642505 CCTTTGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
63642545 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
63642561 TGTAACACCC
Statistics
Matches: 84, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 13 0.15
40 68 0.81
41 3 0.04
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.24
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
Found at i:63644052 original size:28 final size:27
Alignment explanation
Indices: 63643989--63644058 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
63643979 ATAGTGAGTC
63643989 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
* *
63644016 CGCACACTTAGTGTTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
63644044 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63644059 GTACAAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:63645561 original size:30 final size:30
Alignment explanation
Indices: 63645506--63645636 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
63645496 ATAGTGAATC
*
63645506 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
63645535 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
63645565 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
63645593 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
63645623 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63645637 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:63645616 original size:58 final size:58
Alignment explanation
Indices: 63645505--63645636 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
63645495 TATAGTGAAT
* * * * *
63645505 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
63645564 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
63645622 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
63645637 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:63653505 original size:30 final size:30
Alignment explanation
Indices: 63653450--63653580 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
63653440 ATAGTGAATC
*
63653450 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
63653479 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
63653509 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
63653537 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
63653567 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63653581 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:63653560 original size:58 final size:58
Alignment explanation
Indices: 63653449--63653580 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
63653439 TATAGTGAAT
* * * * *
63653449 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
63653508 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
63653566 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
63653581 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:63660745 original size:71 final size:71
Alignment explanation
Indices: 63660661--63660824 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
63660651 CGATTTGTCT
63660661 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
63660726 CTTTCA
66 CTTTCA
* *
63660732 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
63660797 CTTTCA
66 CTTTCA
63660803 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
63660825 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:63660862 original size:71 final size:70
Alignment explanation
Indices: 63660661--63660858 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
63660651 CGATTTGTCT
* * * * *
63660661 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
63660726 CTTTCA
65 CTTTCA
* * * *
63660732 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
63660797 CTTTCA
65 CTTTCA
* *
63660803 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
63660859 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:63665718 original size:78 final size:81
Alignment explanation
Indices: 63665598--63665779 Score: 248
Period size: 78 Copynumber: 2.3 Consensus size: 81
63665588 TACTCGTTCA
* *
63665598 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
63665661 ATTTAGTAAC-TCGCAC
65 ATATAGTAACTTAGCAC
**
63665677 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
63665740 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
63665756 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
63665780 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
77 3 0.03
78 48 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:63665779 original size:40 final size:40
Alignment explanation
Indices: 63665577--63665779 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
63665567 CGGAGTTTAA
** *
63665577 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63665617 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
63665657 CCGGATTTAGTAACTCGCAC-AATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
63665695 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
63665735 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
63665775 CCGGA
1 CCGGA
63665780 CATCATTCGA
Statistics
Matches: 142, Mismatches: 13, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
38 25 0.18
39 22 0.15
40 83 0.58
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:63673530 original size:21 final size:21
Alignment explanation
Indices: 63673506--63673582 Score: 57
Period size: 21 Copynumber: 3.7 Consensus size: 21
63673496 GGGGTTTTAA
63673506 GTTTGGGGTTTAGGGTTTGGT
1 GTTTGGGGTTTAGGGTTTGGT
* * * *
63673527 GTTTGGTGTTCATGGTTTAGT
1 GTTTGGGGTTTAGGGTTTGGT
** * *
63673548 GTTTATGATTTTGGGTTTTGG-
1 GTTTGGGGTTTAGGG-TTTGGT
*
63673569 GTTTCGGGTTTAGG
1 GTTTGGGGTTTAGG
63673583 CTATAATTTT
Statistics
Matches: 39, Mismatches: 16, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 35 0.90
22 4 0.10
ACGTcount: A:0.08, C:0.03, G:0.39, T:0.51
Consensus pattern (21 bp):
GTTTGGGGTTTAGGGTTTGGT
Found at i:63674523 original size:37 final size:37
Alignment explanation
Indices: 63674470--63674583 Score: 131
Period size: 37 Copynumber: 3.1 Consensus size: 37
63674460 AAACCGCCTT
* * * *
63674470 GTGCATTGCAACCCATCTCCTCTGTCGCCTTCTCCTC
1 GTGCATCGCAACCCATCTCCTCTATCGCCTTCGCCCC
* * *
63674507 GTGCATCGCAAACCATCCCCTCCATCGCCTTCGCCCC
1 GTGCATCGCAACCCATCTCCTCTATCGCCTTCGCCCC
* *
63674544 GTGCATCGCAACCCATATCCTCTATTC-CCTTCGTCCC
1 GTGCATCGCAACCCATCTCCTCTA-TCGCCTTCGCCCC
63674581 GTG
1 GTG
63674584 TATCTACTGC
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
37 62 0.97
38 2 0.03
ACGTcount: A:0.14, C:0.45, G:0.14, T:0.27
Consensus pattern (37 bp):
GTGCATCGCAACCCATCTCCTCTATCGCCTTCGCCCC
Found at i:63676181 original size:14 final size:15
Alignment explanation
Indices: 63676159--63676195 Score: 67
Period size: 14 Copynumber: 2.5 Consensus size: 15
63676149 TTAGTATAAT
63676159 AATTATATGAAGTAA
1 AATTATATGAAGTAA
63676174 AA-TATATGAAGTAA
1 AATTATATGAAGTAA
63676188 AATTATAT
1 AATTATAT
63676196 TGTATACTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (15 bp):
AATTATATGAAGTAA
Found at i:63677816 original size:16 final size:16
Alignment explanation
Indices: 63677795--63678210 Score: 172
Period size: 16 Copynumber: 26.0 Consensus size: 16
63677785 TCACATAATT
*
63677795 TACATAATTTACATAA
1 TACATAACTTACATAA
63677811 TACATAACTTACATAA
1 TACATAACTTACATAA
* *
63677827 TATA-AAGTT-CA-AA
1 TACATAACTTACATAA
*
63677840 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
*
63677857 TTTACATAACTTACAAAA
1 --TACATAACTTACATAA
*
63677875 TACATGACTTACATAA
1 TACATAACTTACATAA
** **
63677891 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
*
63677904 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
63677921 TACATAACTTACATAA
1 TACATAACTTACATAA
* **
63677937 T--TTAA-AGACCA-AA
1 TACATAACTTA-CATAA
* *
63677950 TTTCATAAGTTACATAA
1 -TACATAACTTACATAA
63677967 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
*
63677985 TA-ATTTAAAGTT-CA-AA
1 TACA--T-AACTTACATAA
*
63678001 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
63678018 TACATAACTTACATAA
1 TACATAACTTACATAA
** **
63678034 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
* *
63678047 TTTCATAAGTTACATAA
1 -TACATAACTTACATAA
63678064 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
**
63678082 TA-ATTTAA-AGATCA-AA
1 TACA--TAACTTA-CATAA
* *
63678098 TTTCATACCTTACATAA
1 -TACATAACTTACATAA
63678115 TACATAACTTACATAA
1 TACATAACTTACATAA
** ** *
63678131 TTTA-AAGAT-CAAAA
1 TACATAACTTACATAA
*
63678145 TTCATAACTTACATAA
1 TACATAACTTACATAA
63678161 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
63678179 TACATAACTTACATAA
1 TACATAACTTACATAA
* *
63678195 TACGTTACTTACATAA
1 TACATAACTTACATAA
63678211 CTTAATTATA
Statistics
Matches: 302, Mismatches: 59, Indels: 78
0.69 0.13 0.18
Matches are distributed among these distances:
13 9 0.03
14 27 0.09
15 32 0.11
16 144 0.48
17 24 0.08
18 66 0.22
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:63677923 original size:46 final size:46
Alignment explanation
Indices: 63677855--63678179 Score: 461
Period size: 46 Copynumber: 6.8 Consensus size: 46
63677845 TAACTTACAT
* *
63677855 AATTTACATAACTTACAAAATACATGACTTACATAATTTAAAGATCA
1 AATTT-CATAACTTACATAATACATAACTTACATAATTTAAAGATCA
*
63677902 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGACCA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
* *
63677948 AATTTCATAAGTTACATAATTTACATAACTTACATAATAATTTAAAGTTCA
1 AATTTCATAACTTACATAA--TACATAACTTAC---ATAATTTAAAGATCA
63677999 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
*
63678045 AATTTCATAAGTTACATAATTTACATAACTTACATAATAATTTAAAGATCA
1 AATTTCATAACTTACATAA--TACATAACTTAC---ATAATTTAAAGATCA
*
63678096 AATTTCATACCTTACATAATACATAACTTACATAATTTAAAGATCA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
*
63678142 AAATTCATAACTTACATAATTTACATAACTTACATAAT
1 AATTTCATAACTTACATAA--TACATAACTTACATAAT
63678180 ACATAACTTA
Statistics
Matches: 253, Mismatches: 13, Indels: 23
0.88 0.04 0.08
Matches are distributed among these distances:
46 120 0.47
47 5 0.02
48 41 0.16
49 24 0.09
51 63 0.25
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (46 bp):
AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
Found at i:63678003 original size:110 final size:111
Alignment explanation
Indices: 63677791--63678195 Score: 472
Period size: 97 Copynumber: 3.9 Consensus size: 111
63677781 CAACTCACAT
* **
63677791 AATTTACATAATTTACATAATACATAACTTACATAATATAAAGTTCAAATTTCATAACTTACATA
1 AATTTACATAACTTACATAATACATAACTTACATAATATAAAGACCAAATTTCATAACTTACATA
*
63677856 ATTTACATAACTTACAAAATACATGACTTACATAATTTAAAGATCA
66 ATTTACATAACTTACAAAATACATAACTTACATAATTTAAAGATCA
* *
63677902 AATTT-CATAACTTACATAATACATAACTTACATAATTTAAAGACCAAATTTCATAAGTTACATA
1 AATTTACATAACTTACATAATACATAACTTACATAATATAAAGACCAAATTTCATAACTTACATA
*
63677966 ATTTACATAAC-T------TAC---A--TA-ATAATTTAAAGTTCA
66 ATTTACATAACTTACAAAATACATAACTTACATAATTTAAAGATCA
* * *
63677999 AATTT-CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAAGTTACATA
1 AATTTACATAACTTACATAATACATAACTTACATAATATAAAGACCAAATTTCATAACTTACATA
63678063 ATTTACATAAC-T------TAC---A--TA-ATAATTTAAAGATCA
66 ATTTACATAACTTACAAAATACATAACTTACATAATTTAAAGATCA
* * * *
63678096 AATTT-CATACCTTACATAATACATAACTTACATAATTTAAAGATCAAAATTCATAACTTACATA
1 AATTTACATAACTTACATAATACATAACTTACATAATATAAAGACCAAATTTCATAACTTACATA
*
63678160 ATTTACATAACTTACATAATACATAACTTACATAAT
66 ATTTACATAACTTACAAAATACATAACTTACATAAT
63678196 ACGTTACTTA
Statistics
Matches: 270, Mismatches: 11, Indels: 27
0.88 0.04 0.09
Matches are distributed among these distances:
97 181 0.67
98 3 0.01
100 1 0.00
103 3 0.01
104 3 0.01
107 1 0.00
109 3 0.01
110 70 0.26
111 5 0.02
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.36
Consensus pattern (111 bp):
AATTTACATAACTTACATAATACATAACTTACATAATATAAAGACCAAATTTCATAACTTACATA
ATTTACATAACTTACAAAATACATAACTTACATAATTTAAAGATCA
Found at i:63678008 original size:21 final size:21
Alignment explanation
Indices: 63677984--63678054 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
63677974 AACTTACATA
63677984 ATAATTTAAAGTTCAAATTTC
1 ATAATTTAAAGTTCAAATTTC
* * * *
63678005 ATAACTTACATAATACATAACTTAC
1 ATAATTTA-A-AGTTCA-AA-TTTC
*
63678030 ATAATTTAAAGATCAAATTTC
1 ATAATTTAAAGTTCAAATTTC
63678051 ATAA
1 ATAA
63678055 GTTACATAAT
Statistics
Matches: 37, Mismatches: 9, Indels: 8
0.69 0.17 0.15
Matches are distributed among these distances:
21 14 0.38
22 3 0.08
23 7 0.19
24 3 0.08
25 10 0.27
ACGTcount: A:0.48, C:0.13, G:0.03, T:0.37
Consensus pattern (21 bp):
ATAATTTAAAGTTCAAATTTC
Found at i:63678011 original size:97 final size:97
Alignment explanation
Indices: 63677887--63678180 Score: 543
Period size: 97 Copynumber: 3.0 Consensus size: 97
63677877 CATGACTTAC
*
63677887 ATAATTTAAAGATCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGACCAAATT
1 ATAATTTAAAGATCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATT
63677952 TCATAAGTTACATAATTTACATAACTTACATA
66 TCATAAGTTACATAATTTACATAACTTACATA
*
63677984 ATAATTTAAAGTTCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATT
1 ATAATTTAAAGATCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATT
63678049 TCATAAGTTACATAATTTACATAACTTACATA
66 TCATAAGTTACATAATTTACATAACTTACATA
* *
63678081 ATAATTTAAAGATCAAATTTCATACCTTACATAATACATAACTTACATAATTTAAAGATCAAAAT
1 ATAATTTAAAGATCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATT
*
63678146 TCATAACTTACATAATTTACATAACTTACATA
66 TCATAAGTTACATAATTTACATAACTTACATA
63678178 ATA
1 ATA
63678181 CATAACTTAC
Statistics
Matches: 191, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
97 191 1.00
ACGTcount: A:0.47, C:0.14, G:0.03, T:0.36
Consensus pattern (97 bp):
ATAATTTAAAGATCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATT
TCATAAGTTACATAATTTACATAACTTACATA
Found at i:63678213 original size:9 final size:9
Alignment explanation
Indices: 63677782--63678214 Score: 133
Period size: 9 Copynumber: 48.7 Consensus size: 9
63677772 GTTCACCAGC
*
63677782 AACTCACAT
1 AACTTACAT
*
63677791 AATTTACAT
1 AACTTACAT
*
63677800 AATTTACAT
1 AACTTACAT
63677809 AA--TACAT
1 AACTTACAT
63677816 AACTTACAT
1 AACTTACAT
*
63677825 AA--TATA-
1 AACTTACAT
*
63677831 AAGTT-CA-
1 AACTTACAT
*
63677838 AA-TTTCAT
1 AACTTACAT
63677846 AACTTACAT
1 AACTTACAT
*
63677855 AATTTACAT
1 AACTTACAT
63677864 AACTTACA-
1 AACTTACAT
*
63677872 AA-ATACAT
1 AACTTACAT
*
63677880 GACTTACAT
1 AACTTACAT
* *
63677889 AATTTAAAGAT
1 AACTT--ACAT
* *
63677900 CAAATTTCAT
1 -AACTTACAT
63677910 AACTTACAT
1 AACTTACAT
63677919 AA--TACAT
1 AACTTACAT
63677926 AACTTACAT
1 AACTTACAT
* * *
63677935 AATTTAAAGACC
1 AACTT--ACA-T
* *
63677947 AAATTTCAT
1 AACTTACAT
*
63677956 AAGTTACAT
1 AACTTACAT
*
63677965 AATTTACAT
1 AACTTACAT
63677974 AACTTACAT
1 AACTTACAT
* **
63677983 AA-TAATTT
1 AACTTACAT
*
63677991 AAAGTT-CA-
1 -AACTTACAT
*
63677999 AA-TTTCAT
1 AACTTACAT
63678007 AACTTACAT
1 AACTTACAT
63678016 AA--TACAT
1 AACTTACAT
63678023 AACTTACAT
1 AACTTACAT
* *
63678032 AATTTAAAGAT
1 AACTT--ACAT
* *
63678043 CAAATTTCAT
1 -AACTTACAT
*
63678053 AAGTTACAT
1 AACTTACAT
*
63678062 AATTTACAT
1 AACTTACAT
63678071 AACTTACATAAT
1 AACTTAC---AT
* *
63678083 AATTTAAAGAT
1 AACTT--ACAT
* *
63678094 CAAATTTCAT
1 -AACTTACAT
*
63678104 ACCTTACAT
1 AACTTACAT
63678113 AA--TACAT
1 AACTTACAT
63678120 AACTTACAT
1 AACTTACAT
* *
63678129 AATTTAAAGAT
1 AACTT--ACAT
*
63678140 CAAAATT-CAT
1 --AACTTACAT
63678150 AACTTACAT
1 AACTTACAT
*
63678159 AATTTACAT
1 AACTTACAT
63678168 AACTTACAT
1 AACTTACAT
63678177 AA--TACAT
1 AACTTACAT
63678184 AACTTACAT
1 AACTTACAT
*
63678193 AA--TACGT
1 AACTTACAT
*
63678200 TACTTACAT
1 AACTTACAT
63678209 AACTTA
1 AACTTA
63678215 ATTATACTTA
Statistics
Matches: 315, Mismatches: 65, Indels: 88
0.67 0.14 0.19
Matches are distributed among these distances:
6 6 0.02
7 56 0.18
8 15 0.05
9 188 0.60
10 10 0.03
11 13 0.04
12 22 0.07
13 4 0.01
14 1 0.00
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (9 bp):
AACTTACAT
Found at i:63680023 original size:40 final size:40
Alignment explanation
Indices: 63679974--63680181 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
63679964 TCTTCGGAAT
* * *
63679974 TTAG-CCGGATATAACCACGAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
63680013 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
63680053 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
63680093 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
63680133 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
63680173 TTAGCCCGG
1 TTAGCCCGG
63680182 GTATCATTCA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 3 0.02
40 142 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:63686758 original size:40 final size:40
Alignment explanation
Indices: 63686631--63686760 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
63686621 ATGCTGGAAA
* *
63686631 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
63686671 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
63686711 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
63686751 TTATATCCGG
1 TTATATCCGG
63686761 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:63697563 original size:40 final size:40
Alignment explanation
Indices: 63697436--63697565 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
63697426 ATGCTGGAAA
* *
63697436 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
63697476 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
63697516 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
63697556 TTATATCCGG
1 TTATATCCGG
63697566 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:63700545 original size:40 final size:40
Alignment explanation
Indices: 63700496--63700703 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
63700486 TCTTCGGAAT
* * *
63700496 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
63700535 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
63700575 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* * * *
63700615 TTAGCCCGGATATCATCACTAGCATAAATGCCTTCGAGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
63700655 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
63700695 TTAGCCCGG
1 TTAGCCCGG
63700704 GTATCATTCA
Statistics
Matches: 142, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 3 0.02
40 138 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:63705063 original size:40 final size:40
Alignment explanation
Indices: 63705008--63705099 Score: 130
Period size: 40 Copynumber: 2.3 Consensus size: 40
63704998 TATTCAAATG
* * * *
63705008 ATATCTGGCCTAAGTCCTGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
63705048 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
63705088 ATATTCGGGCTA
1 ATATCCGGGCTA
63705100 TGTGACAGCC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.33
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:63706654 original size:27 final size:28
Alignment explanation
Indices: 63706598--63706667 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
63706588 AAATTTGTAC
63706598 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
63706626 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
63706653 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63706668 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:63706678 original size:27 final size:27
Alignment explanation
Indices: 63706598--63706679 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
63706588 AAATTTGTAC
* *
63706598 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
63706626 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
63706653 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
63706680 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:63714460 original size:27 final size:28
Alignment explanation
Indices: 63714404--63714473 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
63714394 AAATTTGTAC
63714404 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
63714432 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
63714459 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63714474 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:63714484 original size:27 final size:27
Alignment explanation
Indices: 63714404--63714485 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
63714394 AAATTTGTAC
* *
63714404 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
63714432 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
63714459 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
63714486 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:63715959 original size:40 final size:40
Alignment explanation
Indices: 63715903--63716037 Score: 175
Period size: 40 Copynumber: 3.4 Consensus size: 40
63715893 GGGTGTTACA
*
63715903 GGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCG
* * *
63715943 GGCTAAGTCCCAAAGGCTTTTGTGCTATTGACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCG
* * *
63715983 GGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTACATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCCG
*
63716022 GGCTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
63716038 TACTTGGGTT
Statistics
Matches: 82, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 14 0.17
40 66 0.80
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCG
Found at i:63724918 original size:37 final size:37
Alignment explanation
Indices: 63724826--63725038 Score: 229
Period size: 37 Copynumber: 5.7 Consensus size: 37
63724816 TCGAATGATG
*
63724826 TCCGGGCTAAGCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGC-AAGTTAC--TA
* * *
63724865 TCCGGACTAAGACCGAAGGCATTTGTGCGAGTTACTA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTA
*
63724902 TCCGGGCTAAGCCCGAAGGCA-TTGTGCAAGTCACTAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACT-A
* *
63724939 TCCGGGTTAAGTCCCG-AGGCATTTGTGCGAGTTACTA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTA
*
63724976 TAACCGGGCT-AGTCCGAAGGCATTTGTGCAAG-TACTA
1 T--CCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTA
* *
63725013 TACGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
63725039 ACGAGTAGCA
Statistics
Matches: 148, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
35 6 0.04
36 13 0.09
37 61 0.41
38 32 0.22
39 29 0.20
40 7 0.05
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (37 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTA
Found at i:63724983 original size:76 final size:74
Alignment explanation
Indices: 63724826--63725038 Score: 272
Period size: 74 Copynumber: 2.8 Consensus size: 74
63724816 TCGAATGATG
* * *
63724826 TCCGGGCTAAGCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAG-ACCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTGTGC-AAGT-ACTA-ATCCGGGCTAAGTCCCGAAGGCATTTG
63724890 TGCGAGTTACTA
63 TGCGAGTTACTA
*
63724902 TCCGGGCTAAGCCCGAAGGCATTGTGCAAGTCACTAATCCGGGTTAAGTCCCG-AGGCATTTGTG
1 TCCGGGCTAAGCCCGAAGGCATTGTGCAAGT-ACTAATCCGGGCTAAGTCCCGAAGGCATTTGTG
63724966 CGAGTTACTA
65 CGAGTTACTA
* * *
63724976 TAACCGGGCT-AGTCCGAAGGCATTTGTGCAAGTACT-ATACGGGCTATGTCCCGAAGGCATTTG
1 T--CCGGGCTAAGCCCGAAGGCA-TTGTGCAAGTACTAATCCGGGCTAAGTCCCGAAGGCATTTG
63725039 ACGAGTAGCA
Statistics
Matches: 123, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
74 46 0.37
75 34 0.28
76 43 0.35
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (74 bp):
TCCGGGCTAAGCCCGAAGGCATTGTGCAAGTACTAATCCGGGCTAAGTCCCGAAGGCATTTGTGC
GAGTTACTA
Found at i:63725044 original size:74 final size:75
Alignment explanation
Indices: 63724826--63725038 Score: 267
Period size: 76 Copynumber: 2.8 Consensus size: 75
63724816 TCGAATGATG
* * *
63724826 TCCGGGCTAAGCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAG-ACCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGC-AAGTCACTATA--CGGGCTAAGTCCCGAAGGCATTT
63724889 GTGCGAGTTACTA
63 GTGCGAGTTACTA
* *
63724902 TCCGGGCTAAGCCCGAAGGCA-TTGTGCAAGTCACTAATCCGGGTTAAGTCCCG-AGGCATTTGT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTCACT-ATACGGGCTAAGTCCCGAAGGCATTTGT
63724965 GCGAGTTACTA
65 GCGAGTTACTA
* *
63724976 TAACCGGGCT-AGTCCGAAGGCATTTGTGCAAGT-ACTATACGGGCTATGTCCCGAAGGCATTTG
1 T--CCGGGCTAAGCCCGAAGGCATTTGTGCAAGTCACTATACGGGCTAAGTCCCGAAGGCATTTG
63725039 ACGAGTAGCA
Statistics
Matches: 121, Mismatches: 9, Indels: 15
0.83 0.06 0.10
Matches are distributed among these distances:
74 43 0.36
75 33 0.27
76 45 0.37
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (75 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTCACTATACGGGCTAAGTCCCGAAGGCATTTGTG
CGAGTTACTA
Found at i:63734063 original size:80 final size:80
Alignment explanation
Indices: 63733979--63734127 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
63733969 TATGGTAACC
* * * *
63733979 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
63734043 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
63734059 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
63734124 CCGG
66 CCGG
63734128 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:63734069 original size:40 final size:38
Alignment explanation
Indices: 63734020--63734127 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
63734010 ATCACGATTT
*
63734020 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
63734060 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
63734100 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
63734128 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:63742174 original size:80 final size:80
Alignment explanation
Indices: 63742090--63742238 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
63742080 TATGGTAACC
* * * *
63742090 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
63742154 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
63742170 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
63742235 CCGG
66 CCGG
63742239 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:63742180 original size:40 final size:38
Alignment explanation
Indices: 63742131--63742238 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
63742121 ATCACGATTT
*
63742131 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
63742171 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
63742211 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
63742239 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:63744301 original size:2 final size:2
Alignment explanation
Indices: 63744294--63744328 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
63744284 ACACTACTTA
63744294 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
63744329 GAAAAAGCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:63744967 original size:23 final size:23
Alignment explanation
Indices: 63744941--63744999 Score: 109
Period size: 23 Copynumber: 2.6 Consensus size: 23
63744931 GAAAAGGATG
63744941 AGGGAAGGGGAAGGGGAAGGGGA
1 AGGGAAGGGGAAGGGGAAGGGGA
63744964 AGGGAAGGGGAAGGGGAAGGGGA
1 AGGGAAGGGGAAGGGGAAGGGGA
*
63744987 AGGGAAAGGGAAG
1 AGGGAAGGGGAAG
63745000 ATCGGTGTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (23 bp):
AGGGAAGGGGAAGGGGAAGGGGA
Found at i:63744997 original size:17 final size:18
Alignment explanation
Indices: 63744941--63744999 Score: 86
Period size: 17 Copynumber: 3.4 Consensus size: 18
63744931 GAAAAGGATG
63744941 AGGGAAGGGGAAGGGGAA
1 AGGGAAGGGGAAGGGGAA
*
63744959 GGGGAA-GGGAAGGGGAA
1 AGGGAAGGGGAAGGGGAA
*
63744976 GGGGAAGGGGAA-GGGAA
1 AGGGAAGGGGAAGGGGAA
63744993 AGGGAAG
1 AGGGAAG
63745000 ATCGGTGTTG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
17 28 0.74
18 10 0.26
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (18 bp):
AGGGAAGGGGAAGGGGAA
Found at i:63744998 original size:6 final size:6
Alignment explanation
Indices: 63744942--63744996 Score: 94
Period size: 6 Copynumber: 9.3 Consensus size: 6
63744932 AAAAGGATGA
63744942 GGGAAG GGGAAG GGGAAG GGGAA- GGGAAG GGGAAG GGGAAG GGGAAG
1 GGGAAG GGGAAG GGGAAG GGGAAG GGGAAG GGGAAG GGGAAG GGGAAG
*
63744989 GGAAAG GG
1 GGGAAG GG
63744997 AAGATCGGTG
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
5 5 0.11
6 42 0.89
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (6 bp):
GGGAAG
Found at i:63745379 original size:58 final size:57
Alignment explanation
Indices: 63745231--63745379 Score: 158
Period size: 57 Copynumber: 2.6 Consensus size: 57
63745221 ATCATATAAT
* * * *
63745231 AGGATTACTAGTCCAGGCTAAATCCTTTATGTAACATATGCTCAGAAGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCCTATATGTAACATATGCTCAGAAGAGATCAATC
* * *
63745288 AGGATTACCAGTCCATGCTAAATCCTA-ATTGTAACATATGCTC-GAGAGGGATTATATC
1 AGGATTACCAGTCCAGGCTAAATCCTATA-TGTAACATATGCTCAGA-AGAGATCA-ATC
* ** *
63745346 AGGATTACCCGTCTGGGTTAAATCCTATATGTAA
1 AGGATTACCAGTCCAGGCTAAATCCTATATGTAA
63745380 TGAGATCAAG
Statistics
Matches: 76, Mismatches: 12, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
56 3 0.04
57 43 0.57
58 29 0.38
59 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCTATATGTAACATATGCTCAGAAGAGATCAATC
Found at i:63748857 original size:47 final size:48
Alignment explanation
Indices: 63748788--63748915 Score: 149
Period size: 47 Copynumber: 2.7 Consensus size: 48
63748778 GGTAAAGTAC
*
63748788 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTTAT-ATCTC-AAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTTATCATCTCGAAG
* * *
63748834 TCGATGCCATGTCCCAGACATGGTCTTATACTGGC-TATCATCTCGTAG
1 -CGATGCCATGTCCCAGACATGGTCTTACACTAGCTTATCATCTCGAAG
* *
63748882 CTGATG-GATGTCCCAGACAT-GTCTTACAATAGCT
1 C-GATGCCATGTCCCAGACATGGTCTTACACTAGCT
63748916 AACACACAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
46 13 0.19
47 50 0.72
48 6 0.09
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTTATCATCTCGAAG
Found at i:63749764 original size:25 final size:25
Alignment explanation
Indices: 63749736--63749785 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
63749726 ATTGATTGAG
63749736 TAAGAAGATGAAAAAGGGATGATAT
1 TAAGAAGATGAAAAAGGGATGATAT
63749761 TAAGAAGATGAAAAAGGGATGATAT
1 TAAGAAGATGAAAAAGGGATGATAT
63749786 CATCTTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.28, T:0.20
Consensus pattern (25 bp):
TAAGAAGATGAAAAAGGGATGATAT
Found at i:63755652 original size:25 final size:25
Alignment explanation
Indices: 63755617--63755711 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
63755607 TAAGCTTGTT
* *
63755617 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATATTTCCGGTTA
*
63755642 AATTTGCTCTTAATATTTTCGGTTA
1 AATTTGCTCTTAATATTTCCGGTTA
63755667 AATTTGCTCTTAATATTTCCGGTTA
1 AATTTGCTCTTAATATTTCCGGTTA
* *
63755692 AATTTGCCCTTATTATTTCC
1 AATTTGCTCTTAATATTTCC
63755712 AAATAAGTTA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 64 1.00
ACGTcount: A:0.24, C:0.16, G:0.11, T:0.49
Consensus pattern (25 bp):
AATTTGCTCTTAATATTTCCGGTTA
Found at i:63755671 original size:12 final size:12
Alignment explanation
Indices: 63755636--63755698 Score: 54
Period size: 12 Copynumber: 5.1 Consensus size: 12
63755626 TTAATAATTC
63755636 CGGTTAAATTTG
1 CGGTTAAATTTG
** *
63755648 CTCTTAATATTTT
1 CGGTTAA-ATTTG
63755661 CGGTTAAATTTG
1 CGGTTAAATTTG
** *
63755673 CTCTTAATATTTC
1 CGGTTAA-ATTTG
63755686 CGGTTAAATTTG
1 CGGTTAAATTTG
63755698 C
1 C
63755699 CCTTATTATT
Statistics
Matches: 37, Mismatches: 12, Indels: 4
0.70 0.23 0.08
Matches are distributed among these distances:
12 19 0.51
13 18 0.49
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.48
Consensus pattern (12 bp):
CGGTTAAATTTG
Found at i:63756009 original size:2 final size:2
Alignment explanation
Indices: 63756002--63756027 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
63755992 TATGGTAAAG
63756002 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
63756028 GAAAATATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63756612 original size:45 final size:45
Alignment explanation
Indices: 63756548--63756812 Score: 367
Period size: 45 Copynumber: 6.0 Consensus size: 45
63756538 TATCATACAG
*
63756548 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
63756593 TACTATTTGGGCCTTTGAGCTTAGCAGGGTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
63756638 TACTATTCGGGCCTTTAAGCCTAACAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
63756683 TACTATTCGGGCCTTTGAGCCTAGCAGGTTATAATGCCAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
63756728 TACTATTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
63756773 TGA-TA-TCGGG-CTTTGAGCCTAGCAGGC-AAAATACCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
63756813 ATGAGTTCGG
Statistics
Matches: 195, Mismatches: 24, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
42 11 0.06
43 16 0.08
44 4 0.02
45 163 0.84
46 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:63756835 original size:41 final size:43
Alignment explanation
Indices: 63756747--63756841 Score: 99
Period size: 41 Copynumber: 2.3 Consensus size: 43
63756737 GGCCTTCGAG
* * * *
63756747 CCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTTGAG
1 CCTAGCAGGCTAAAATACCGGTGAAATGATATCGGGCTTTAAA
63756790 CCTAGCAGGC-AAAATACCGGTG-AATGAGT-TCGGG-TTTAAAA
1 CCTAGCAGGCTAAAATACCGGTGAAATGA-TATCGGGCTTT-AAA
*
63756831 CCTAGTAGGCT
1 CCTAGCAGGCT
63756842 GAATGCCAGT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
40 3 0.07
41 20 0.45
42 11 0.25
43 10 0.23
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (43 bp):
CCTAGCAGGCTAAAATACCGGTGAAATGATATCGGGCTTTAAA
Found at i:63763399 original size:47 final size:47
Alignment explanation
Indices: 63763328--63763552 Score: 212
Period size: 47 Copynumber: 4.8 Consensus size: 47
63763318 TGGGTAAAGT
63763328 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTC-AA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCATATCTCGAA
* * * *
63763375 GTCGATGCCATGTCCTAGACATGGTCTTACGCT-GACT-ATTATCTCGTA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAG-CTCA-TATCTCGAA
* * ** *
63763423 GCCGATG-CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCATATCTCGAA
* * *
63763469 GCCGATG-CATGTCCCAAACAAGTCTTACACTAGCTC-TCGTCTC-AA
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCAT-ATCTCGAA
* * *
63763514 TGTCGTTGCCATGTCCCAGACATGTCTTACACTGGCTCA
1 -GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCA
63763553 CACACAAAGG
Statistics
Matches: 147, Mismatches: 22, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 60 0.41
47 79 0.54
48 7 0.05
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCATATCTCGAA
Found at i:63767114 original size:24 final size:24
Alignment explanation
Indices: 63767082--63767131 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
63767072 TTTTCCCGAT
63767082 AAATAGAATTTATACTTAAAAATA
1 AAATAGAATTTATACTTAAAAATA
63767106 AAATAGAATTTATACTTAAAAATA
1 AAATAGAATTTATACTTAAAAATA
63767130 AA
1 AA
63767132 TTCTTACTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (24 bp):
AAATAGAATTTATACTTAAAAATA
Found at i:63767720 original size:39 final size:39
Alignment explanation
Indices: 63767677--63767751 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
63767667 AATCAGGCAA
** *
63767677 TCACCACCT-ATCCACCATCATTGTTCACTAGTTAGGTAG
1 TCACCA-CTGATCCACCATCATCATTCAATAGTTAGGTAG
*
63767716 TCACCACTGGTCCACCATCATCATTCAATAGTTAGG
1 TCACCACTGATCCACCATCATCATTCAATAGTTAGG
63767752 GCTGATCTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.06
39 29 0.94
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (39 bp):
TCACCACTGATCCACCATCATCATTCAATAGTTAGGTAG
Found at i:63774980 original size:29 final size:29
Alignment explanation
Indices: 63774925--63775040 Score: 119
Period size: 29 Copynumber: 4.0 Consensus size: 29
63774915 GTGAGCATGA
* * *
63774925 ATATGAATGTGA-ATGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
63774953 ATATAAATGTGATTTAGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
63774982 ATATACAGGTGATTTGGGCCTAAAGGGGCC
1 ATATAAATGTGATTTGGGCCT-AATGGGCC
* * *
63775012 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
63775040 A
1 A
63775041 GATATAGGTA
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
28 19 0.26
29 38 0.53
30 15 0.21
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:63775035 original size:58 final size:58
Alignment explanation
Indices: 63774938--63775049 Score: 145
Period size: 58 Copynumber: 1.9 Consensus size: 58
63774928 TGAATGTGAA
* *
63774938 TGGGCCTAACGGGCCATATAAATGTGATTTAGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGATTTAGGCCTAATGGGCCAGATACAGGTGATT
* * * * *
63774996 TGGGCCTAAAGGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAGATATAGGT
1 TGGGCCT-AACGGGCCATATAAATATGATTTAGGCCTAATGGGCCAGATACAGGT
63775050 ATGTGAATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
58 29 0.63
59 17 0.37
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGATTTAGGCCTAATGGGCCAGATACAGGTGATT
Found at i:63779350 original size:29 final size:28
Alignment explanation
Indices: 63779295--63779408 Score: 120
Period size: 29 Copynumber: 4.0 Consensus size: 28
63779285 GTGAGCATGA
* *
63779295 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
63779323 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* * * *
63779352 ATATGCAGGTGATTTGGGCCTAAATGGACG
1 ATATGAATGTGA-TTGGGCCT-AATGGGCC
* *
63779382 ATATGAATATGATTGGGCTTAATGGGC
1 ATATGAATGTGATTGGGCCTAATGGGC
63779409 AGCATACAGG
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
28 17 0.24
29 39 0.55
30 15 0.21
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.28
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:63779743 original size:26 final size:25
Alignment explanation
Indices: 63779693--63779745 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
63779683 AAACCATAAT
* *
63779693 TAAGGGAAAATTACCGAAAAGCCTC
1 TAAGGGAAAATGACCGAAAAACCTC
63779718 TAAGGGAAAAATGACC-AAAATACCTC
1 TAAGGG-AAAATGACCGAAAA-ACCTC
63779744 TA
1 TA
63779746 GGTGTTGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.47, C:0.19, G:0.17, T:0.17
Consensus pattern (25 bp):
TAAGGGAAAATGACCGAAAAACCTC
Found at i:63782413 original size:40 final size:39
Alignment explanation
Indices: 63782368--63782497 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
63782358 CGGAATATAA
63782368 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
63782408 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
63782448 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
63782488 CCGGATATAA
1 CCGGATATAA
63782498 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:63782512 original size:40 final size:40
Alignment explanation
Indices: 63782384--63782535 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
63782374 ATAACCATGT
* * *
63782384 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
63782424 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
63782464 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
63782504 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
63782536 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:63782518 original size:80 final size:80
Alignment explanation
Indices: 63782384--63782533 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
63782374 ATAACCATGT
*
63782384 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
63782448 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
63782464 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
63782527 CCCGGAT
64 CCCGGAT
63782534 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:63789636 original size:40 final size:39
Alignment explanation
Indices: 63789591--63789720 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
63789581 CGGAATATAA
63789591 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
63789631 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
63789671 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
63789711 CCGGATATAA
1 CCGGATATAA
63789721 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:63789735 original size:40 final size:40
Alignment explanation
Indices: 63789607--63789758 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
63789597 ATAACCATGT
* * *
63789607 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
63789647 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
63789687 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
63789727 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
63789759 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:63789741 original size:80 final size:80
Alignment explanation
Indices: 63789607--63789756 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
63789597 ATAACCATGT
*
63789607 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
63789671 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
63789687 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
63789750 CCCGGAT
64 CCCGGAT
63789757 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:63792714 original size:28 final size:29
Alignment explanation
Indices: 63792616--63792714 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
63792606 TCACAAATTG
* *
63792616 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
63792645 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
63792673 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
63792701 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63792715 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:63796302 original size:28 final size:29
Alignment explanation
Indices: 63796249--63796322 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 29
63796239 ATGTGACTGG
* * *
63796249 GCCTAACGGGCCATATAAATGTGATTT-T
1 GCCTAATGGGCCATATAAAGGAGATTTGT
* *
63796277 GGCTAATGGGCCATATACAGGAGATTTGT
1 GCCTAATGGGCCATATAAAGGAGATTTGT
63796306 GCCTAAATGGGCCATAT
1 GCCT-AATGGGCCATAT
63796323 GAATATGATT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 22 0.58
29 4 0.11
30 12 0.32
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (29 bp):
GCCTAATGGGCCATATAAAGGAGATTTGT
Found at i:63797872 original size:46 final size:46
Alignment explanation
Indices: 63797716--63797936 Score: 185
Period size: 46 Copynumber: 4.7 Consensus size: 46
63797706 ATTCGTATGT
* * * *** *
63797716 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACCTTATGA
1 GAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGACGA
* ** *
63797762 GAGCCAGTGTAGGACCATGTCTAGGACATGACATCGGTATTAAGACGA
1 GAGCCAGTGTAAGA-CATGTCTAGGACATG-CATCGGCCTCAAGACGA
* *
63797810 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGACG-A
* * * *
63797857 -AGCCAATGTATGACATGTCTGGGACATGCATCGG-CTACAAGATGA
1 GAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCT-CAAGACGA
* ** *
63797902 TAGTTAGTGTAAGACCATGTCTAGGCCATGGCATC
1 GAGCCAGTGTAAGA-CATGTCTAGGACAT-GCATC
63797937 AACTTGAGAT
Statistics
Matches: 139, Mismatches: 29, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
45 3 0.02
46 68 0.49
47 42 0.30
48 26 0.19
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGACGA
Found at i:63797954 original size:93 final size:94
Alignment explanation
Indices: 63797716--63797975 Score: 233
Period size: 94 Copynumber: 2.8 Consensus size: 94
63797706 ATTCGTATGT
* ** * *** * *
63797716 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACCTTATGA-GAGCCAGTGTAGGACCAT
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGAACTCGAGA-CATGAGCCAGTGTAAGACCAT
* *
63797780 GTCTAGGACATGACATCGGTATTAAGACGA
65 GTCTGGGACATGACATCGGTATCAAGACGA
** * * * *
63797810 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGTAAGCCAATGTATGA-CATG
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGAACTCGAGACATGAGCCAGTGTAAGACCATG
*
63797874 TCTGGGACATG-CATCGGCTA-CAAGATGA
66 TCTGGGACATGACATCGG-TATCAAGACGA
* * * * * *
63797902 TAGTTAGTGTAAGACCATGTCTAGGCCATGGCATC-AACTTGAGATATGAGCCAGTATAAGACCA
1 GAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGAACTCGAGACATGAGCCAGTGTAAGACCA
63797966 TGTCTGGGAC
64 TGTCTGGGAC
63797976 CTAGCCTCGG
Statistics
Matches: 136, Mismatches: 25, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
92 24 0.18
93 46 0.34
94 66 0.49
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (94 bp):
GAGCTAGTGTAAGACATGTCTAGGACATGCATCGAACTCGAGACATGAGCCAGTGTAAGACCATG
TCTGGGACATGACATCGGTATCAAGACGA
Found at i:63799130 original size:20 final size:21
Alignment explanation
Indices: 63799092--63799130 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
63799082 TCGAGTTGGT
63799092 CACACGGGCGTGTTGCCCTTC
1 CACACGGGCGTGTTGCCCTTC
63799113 CACACGGGCGTG-TGCCCT
1 CACACGGGCGTGTTGCCCT
63799131 GTTTTAAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.38, G:0.31, T:0.21
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTC
Found at i:63800911 original size:48 final size:47
Alignment explanation
Indices: 63800840--63801071 Score: 290
Period size: 48 Copynumber: 4.8 Consensus size: 47
63800830 TAAAATACCA
* *
63800840 ATGCCATGTCCTC-GACATGGTCTTACAT-GAATCCATATATCATCGCCG
1 ATGCCATGTCC-CAGACATGGTCTTACATGGCA--CACATATCATCGCCG
* *
63800888 ATGCCATGTCCCAGACATGGTCTTACAT-GAATCCATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACATGGCA--CACATATCATCGCCG
*
63800936 ATGCCATGTCCCAGACATGGTCTTACATTGGCACACATATCATAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACA-TGGCACACATATCATCGCCG
* * *
63800984 ATGTCATGTCCCAGACATGGTCTTACCCTGGCACACATATCATTGCCG
1 ATGCCATGTCCCAGACATGGTCTTA-CATGGCACACATATCATCGCCG
*
63801032 ATGCCATGTCCCAGACATTGTCTTACACTGGCACACATAT
1 ATGCCATGTCCCAGACATGGTCTTACA-TGGCACACATAT
63801072 TGTAACACCC
Statistics
Matches: 170, Mismatches: 9, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
47 2 0.01
48 164 0.96
49 2 0.01
50 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGCACACATATCATCGCCG
Found at i:63802100 original size:27 final size:27
Alignment explanation
Indices: 63802038--63802089 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
63802028 AATTATACAT
63802038 CACAT-AGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
63802064 CACATAAGGGCAAAATAGTCATTTTA
1 CACATAAGGGCAAAACAGTCATTTTA
63802090 TCAATTAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.25
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:63808082 original size:49 final size:50
Alignment explanation
Indices: 63808002--63808246 Score: 266
Period size: 49 Copynumber: 4.9 Consensus size: 50
63807992 ATCTATTGTG
* * *
63808002 AGGTCACGTGTGTAGTACTAAGTCCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
63808052 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACT-CTGCGTACTC-GATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTAC-GTGTAC-CAGATAA-TT
* * * * **
63808102 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** * * *
63808152 AGGTCATGTGTGTAGTA-TAAGTGTAGGCTACTGCGTATACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
63808201 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGGGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
63808247 GCCTTGTCTA
Statistics
Matches: 161, Mismatches: 27, Indels: 15
0.79 0.13 0.07
Matches are distributed among these distances:
48 15 0.09
49 89 0.55
50 20 0.12
51 36 0.22
52 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:63808180 original size:100 final size:97
Alignment explanation
Indices: 63808005--63808246 Score: 283
Period size: 100 Copynumber: 2.5 Consensus size: 97
63807995 TATTGTGAGG
* * *
63808005 TCACGTGTGTAGTACTAAGTCCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
63808070 AAGTGCAGGCTACTCTGCGTACT-C-GATAACTTCGA
66 AAGTGCAGGCTA--CTGCGTA-TACAGATAA-TT-GA
* ** **
63808105 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTA-
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* *
63808169 TAAGTGTAGGCTACTGCGTATACCAGATAATTGG
65 TAAGTGCAGGCTACTGCGTATA-CAGATAATTGA
* * *
63808203 TCACATGTGTAGTACTAAGTGCAGGCTACTATGGGTACCAGATA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
63808247 GCCTTGTCTA
Statistics
Matches: 123, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
97 1 0.01
98 47 0.38
99 3 0.02
100 59 0.48
101 13 0.11
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (97 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTGCGTATACAGATAATTGA
Found at i:63811300 original size:27 final size:27
Alignment explanation
Indices: 63811252--63811410 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
63811242 ACGAGGCTGC
* *
63811252 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
63811279 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
63811305 CAGATATATGTGGTAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
63811332 CAGATAATTGTGGCATAGCCACTAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
63811359 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
63811386 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
63811411 GACGCTTCCT
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
26 10 0.09
27 98 0.87
28 5 0.04
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:63811413 original size:54 final size:54
Alignment explanation
Indices: 63811270--63811413 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
63811260 GTGACGAAGT
* * *
63811270 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGTAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
63811324 CACCAGATCAGATAATTGTGGCATAGCCACTAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
63811378 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
63811414 GCTTCCTCCA
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 79 0.94
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:63813038 original size:26 final size:26
Alignment explanation
Indices: 63813008--63813114 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
63812998 TGAAATTCCC
63813008 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
63813034 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
63813060 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
63813086 ATCATGGAACATTTACCTGA-CCATT
1 ATCATGGAACATTTACCTAACCCATT
63813111 ATCA
1 ATCA
63813115 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 9 0.12
26 69 0.88
ACGTcount: A:0.36, C:0.26, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:63813518 original size:48 final size:48
Alignment explanation
Indices: 63813447--63813625 Score: 286
Period size: 48 Copynumber: 3.7 Consensus size: 48
63813437 GGGGCGTTAC
63813447 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCA
*
63813495 ATGTCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCA
* * * *
63813543 ATGCCATATCCCAGACATGGTCTTGCACTGGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCA
* * *
63813591 ATACCATGTCCCAAACATGGTCTTACACAGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACA
63813626 TTTAGCACGG
Statistics
Matches: 120, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 120 1.00
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.23
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCA
Found at i:63816022 original size:14 final size:14
Alignment explanation
Indices: 63816005--63816035 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
63815995 GCACTACCAT
63816005 ACCACCACCATAAC
1 ACCACCACCATAAC
*
63816019 ACCACCACCATAGC
1 ACCACCACCATAAC
63816033 ACC
1 ACC
63816036 TACTGTACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.52, G:0.03, T:0.06
Consensus pattern (14 bp):
ACCACCACCATAAC
Found at i:63821426 original size:30 final size:30
Alignment explanation
Indices: 63821368--63821426 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
63821358 GCCTTTTAAA
* * *
63821368 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGACAACCAATTTTT
63821398 AATATTTACAAAAAGA-ACAACCACATTTT
1 AATATTTACAAAAAGAGACAACCA-ATTTT
63821427 GAAAATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACAACCAATTTTT
Found at i:63823426 original size:28 final size:28
Alignment explanation
Indices: 63823357--63823457 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
63823347 GACAAGATTG
* * * *
63823357 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
63823387 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
63823415 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
63823444 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63823458 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:63831380 original size:28 final size:28
Alignment explanation
Indices: 63831311--63831411 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
63831301 GACAAGATTG
* * * *
63831311 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
63831341 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
63831369 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
63831398 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63831412 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:63837611 original size:29 final size:29
Alignment explanation
Indices: 63837557--63837613 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
63837547 GAAATGTTAT
* *
63837557 TACTGAGACTACTTTAGGTAGTAAAACTG
1 TACTGAAACTACTTTAGGTAGGAAAACTG
*
63837586 TACTGAAACT-CTTTAGTTAGAGAAAACT
1 TACTGAAACTACTTTAGGTAG-GAAAACT
63837614 ATGAACCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 9 0.38
29 15 0.62
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (29 bp):
TACTGAAACTACTTTAGGTAGGAAAACTG
Found at i:63842355 original size:50 final size:50
Alignment explanation
Indices: 63842269--63842370 Score: 170
Period size: 50 Copynumber: 2.0 Consensus size: 50
63842259 GTATGTTTGA
63842269 TTTAATGGTTTAGTGCTCTAGGAGTGTCTGGAAAGTCATGGGTTCAAGCC
1 TTTAATGGTTTAGTGCTCTAGGAGTGTCTGGAAAGTCATGGGTTCAAGCC
* *
63842319 TTTAGTGGTTTAGTGCTCTGGGAGTGTCT-GAGAAGTCATGGGTTCAAGCC
1 TTTAATGGTTTAGTGCTCTAGGAGTGTCTGGA-AAGTCATGGGTTCAAGCC
63842369 TT
1 TT
63842371 GGCTTGAGAA
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
49 2 0.04
50 47 0.96
ACGTcount: A:0.20, C:0.14, G:0.31, T:0.35
Consensus pattern (50 bp):
TTTAATGGTTTAGTGCTCTAGGAGTGTCTGGAAAGTCATGGGTTCAAGCC
Found at i:63842439 original size:23 final size:23
Alignment explanation
Indices: 63842380--63842428 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
63842370 TGGCTTGAGA
63842380 AAAAAAATTTCTCCTACTTGAAT
1 AAAAAAATTTCTCCTACTTGAAT
63842403 AAAAAAATTTCTCCTACTTGAAT
1 AAAAAAATTTCTCCTACTTGAAT
63842426 AAA
1 AAA
63842429 CCCTTGTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (23 bp):
AAAAAAATTTCTCCTACTTGAAT
Found at i:63862427 original size:14 final size:15
Alignment explanation
Indices: 63862403--63862431 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
63862393 ATTTTTTGTG
63862403 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
63862418 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
63862432 ACTTTCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:63863811 original size:18 final size:19
Alignment explanation
Indices: 63863776--63863812 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
63863766 GTTTAGTTTC
63863776 AAAGCTTAAGCCATTTGAA
1 AAAGCTTAAGCCATTTGAA
63863795 AAAG-TTAA-CCATATTGAA
1 AAAGCTTAAGCCAT-TTGAA
63863813 TTTGTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.24
18 9 0.53
19 4 0.24
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.27
Consensus pattern (19 bp):
AAAGCTTAAGCCATTTGAA
Found at i:63870178 original size:56 final size:56
Alignment explanation
Indices: 63870084--63870283 Score: 319
Period size: 56 Copynumber: 3.6 Consensus size: 56
63870074 TGGGGCGTTA
* *
63870084 CACGTTTAATACGTTGGCATTGATATGTGATTCTGATATATGTGTGTGAGTAAGAC
1 CACGTTTAATACGTTGGCATCGATATGTGATTCCGATATATGTGTGTGAGTAAGAC
* * *
63870140 CATGTTTAATATGTTGGCATCGATATGTGATTCCGATATATGTGTGTGAGTAAGAG
1 CACGTTTAATACGTTGGCATCGATATGTGATTCCGATATATGTGTGTGAGTAAGAC
*
63870196 CACGTTTAATATGTTGGCATCGATATGTGATTCCGATATATGTGTGTGAGTAAGAC
1 CACGTTTAATACGTTGGCATCGATATGTGATTCCGATATATGTGTGTGAGTAAGAC
* * *
63870252 CACGTCTAGTACATTGGCATCGATATGTGATT
1 CACGTTTAATACGTTGGCATCGATATGTGATT
63870284 ACATGTAAGA
Statistics
Matches: 133, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 133 1.00
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.36
Consensus pattern (56 bp):
CACGTTTAATACGTTGGCATCGATATGTGATTCCGATATATGTGTGTGAGTAAGAC
Found at i:63871963 original size:31 final size:32
Alignment explanation
Indices: 63871907--63871969 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
63871897 CACACTTGTC
*
63871907 ATAATTTAATATATTTATTACATAAAAATCTT
1 ATAATATAATATATTTATTACATAAAAATCTT
*
63871939 ATAATATAA-ATATTTAATTA-ATAAATATCTT
1 ATAATATAATATATTT-ATTACATAAAAATCTT
63871970 TTATAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 16 0.57
32 12 0.43
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (32 bp):
ATAATATAATATATTTATTACATAAAAATCTT
Found at i:63876718 original size:18 final size:18
Alignment explanation
Indices: 63876695--63876780 Score: 93
Period size: 18 Copynumber: 4.7 Consensus size: 18
63876685 GAACGATTAT
* *
63876695 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAATCAA
*
63876713 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAA
* *
63876731 TTATTCAATAATAAT-AA
1 TTATTCAGTAACAATCAA
*
63876748 GTTATTCAGTAACAATTAAA
1 -TTATTCAGTAACAA-TCAA
63876768 TTATTCAGTAACA
1 TTATTCAGTAACA
63876781 GTCGATCTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
17 2 0.04
18 39 0.68
19 14 0.25
20 2 0.04
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:63876736 original size:36 final size:37
Alignment explanation
Indices: 63876695--63876783 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 37
63876685 GAACGATTAT
* *
63876695 TTATTCAGTAACAGTCAGTTATTCGGTAACAA-TCAA
1 TTATTCAGTAACAGTCAGTTATTCAGTAACAATTAAA
* * * *
63876731 TTATTCAATAATAATAAGTTATTCAGTAACAATTAAA
1 TTATTCAGTAACAGTCAGTTATTCAGTAACAATTAAA
63876768 TTATTCAGTAACAGTC
1 TTATTCAGTAACAGTC
63876784 GATCTTTCCA
Statistics
Matches: 42, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
36 27 0.64
37 15 0.36
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.36
Consensus pattern (37 bp):
TTATTCAGTAACAGTCAGTTATTCAGTAACAATTAAA
Found at i:63876959 original size:47 final size:47
Alignment explanation
Indices: 63876908--63877024 Score: 173
Period size: 47 Copynumber: 2.5 Consensus size: 47
63876898 CAGTAACAGT
* * *
63876908 AACAGTAGCAATATGGTACACAGAGTACCTCATCGGAATAAATCCGA
1 AACAGTAACAATACGGTACACAGAGTACCTCATCGGAACAAATCCGA
*
63876955 AACAGTAACAATACGGTACACAGAGTACCTCATTGGAACAAATCCGA
1 AACAGTAACAATACGGTACACAGAGTACCTCATCGGAACAAATCCGA
*
63877002 AACAGTAACAGTAACGGTA-ACAG
1 AACAGTAACAAT-ACGGTACACAG
63877025 TAACAATATC
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
47 58 0.91
48 6 0.09
ACGTcount: A:0.43, C:0.21, G:0.19, T:0.17
Consensus pattern (47 bp):
AACAGTAACAATACGGTACACAGAGTACCTCATCGGAACAAATCCGA
Found at i:63877225 original size:23 final size:22
Alignment explanation
Indices: 63877189--63877253 Score: 68
Period size: 23 Copynumber: 3.1 Consensus size: 22
63877179 AATAGGGTAT
63877189 TTAATTCACT-TTTTAGTTTTCAA
1 TTAATTCA-TATTTTA-TTTTCAA
*
63877212 TTAATTCATATTTTA-ATT-AA
1 TTAATTCATATTTTATTTTCAA
63877232 TTAATT-ATATTTT-TTTTCAA
1 TTAATTCATATTTTATTTTCAA
63877252 TT
1 TT
63877254 CAATATAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
19 9 0.24
20 12 0.32
21 2 0.05
22 1 0.03
23 13 0.35
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.60
Consensus pattern (22 bp):
TTAATTCATATTTTATTTTCAA
Found at i:63877253 original size:20 final size:21
Alignment explanation
Indices: 63877205--63877253 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
63877195 CACTTTTTAG
63877205 TTTTCAATTAATTCATATTTT
1 TTTTCAATTAATTCATATTTT
**
63877226 AATT-AATTAATT-ATATTTT
1 TTTTCAATTAATTCATATTTT
63877245 TTTTCAATT
1 TTTTCAATT
63877254 CAATATAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 9 0.39
20 12 0.52
21 2 0.09
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTCAATTAATTCATATTTT
Found at i:63879666 original size:31 final size:31
Alignment explanation
Indices: 63879628--63879708 Score: 144
Period size: 31 Copynumber: 2.6 Consensus size: 31
63879618 CTCAGCATAT
63879628 ACTGGGCCGAAGCCTTTACATTATTCATACC
1 ACTGGGCCGAAGCCTTTACATTATTCATACC
* *
63879659 ACTGGGCCGAAGCCTTTTCATTATTCATATC
1 ACTGGGCCGAAGCCTTTACATTATTCATACC
63879690 ACTGGGCCGAAGCCTTTAC
1 ACTGGGCCGAAGCCTTTAC
63879709 TGTAAACGGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTACATTATTCATACC
Found at i:63880030 original size:10 final size:10
Alignment explanation
Indices: 63880017--63880051 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
63880007 ATATATGTAT
63880017 ATATCATGGC
1 ATATCATGGC
63880027 ATATCATGTGC
1 ATATCATG-GC
63880038 ATATCATGGC
1 ATATCATGGC
63880048 ATAT
1 ATAT
63880052 TATGCATCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (10 bp):
ATATCATGGC
Found at i:63887040 original size:38 final size:38
Alignment explanation
Indices: 63886979--63887089 Score: 136
Period size: 38 Copynumber: 2.9 Consensus size: 38
63886969 ATTTGATGTG
*
63886979 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
**
63887019 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
* * *
63887057 TAT-CGGGATAAAT-CCGCAGGCCTAGTGCTGGTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
63887090 TTATATTCGG
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
36 18 0.28
37 9 0.14
38 25 0.38
39 5 0.08
40 8 0.12
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:63887085 original size:36 final size:37
Alignment explanation
Indices: 63886995--63887100 Score: 142
Period size: 38 Copynumber: 2.8 Consensus size: 37
63886985 GGCTTAAAGA
** *
63886995 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATAT-CGGGATAAAT
63887033 CCCGCAGGCTTCGTGCTGGTATTATATCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCGGGATAAAT
* *
63887070 -CCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTTCGTGCTGGTATTATA-TCGGG
63887101 CCTTCGTGCC
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
36 23 0.37
37 14 0.23
38 25 0.40
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (37 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCGGGATAAAT
Found at i:63887117 original size:41 final size:43
Alignment explanation
Indices: 63887072--63887174 Score: 138
Period size: 43 Copynumber: 2.4 Consensus size: 43
63887062 GGATAAATCC
*
63887072 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCCTAGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTA
* * *
63887113 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCCTAGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTA
* *
63887156 GCAGGCGTAATGCCGGTGA
1 GCAGGCCTAGTGCCGGTGA
63887175 AATGATATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
41 14 0.26
42 2 0.04
43 37 0.70
ACGTcount: A:0.14, C:0.24, G:0.34, T:0.28
Consensus pattern (43 bp):
GCAGGCCTAGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTA
Found at i:63888786 original size:48 final size:48
Alignment explanation
Indices: 63888692--63888795 Score: 122
Period size: 48 Copynumber: 2.2 Consensus size: 48
63888682 TGTGCTAAGC
* * *
63888692 GTAAGACCTATCTGGGATAGGCATCGGCACAGCCCAGTGAGTGCTAGT
1 GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
**
63888740 GTAAGACCTAT-TGGGAATAGGCATCAGCAC-GGGCAGAGCAGAGCTAGT
1 GTAAGACCTATCTGGG-ATAGGCATCAGCACAGCCCAGAG-AGAGCTAGT
*
63888788 ATAAGACC
1 GTAAGACC
63888796 ATAGTTGGAC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
47 9 0.19
48 39 0.81
ACGTcount: A:0.30, C:0.21, G:0.31, T:0.18
Consensus pattern (48 bp):
GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
Found at i:63892442 original size:38 final size:38
Alignment explanation
Indices: 63892379--63892491 Score: 136
Period size: 38 Copynumber: 2.9 Consensus size: 38
63892369 ATTTGATGTG
*
63892379 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
* **
63892419 TATCCGGGTTAAATCTCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
* * * *
63892457 TATCCGAGATAAATCCCGCAGGCCTAGTGCTGGTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
63892492 TTATATTCGG
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 51 0.80
39 5 0.08
40 8 0.12
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.27
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:63892492 original size:38 final size:38
Alignment explanation
Indices: 63892395--63892497 Score: 143
Period size: 38 Copynumber: 2.7 Consensus size: 38
63892385 GGCTTAAAGA
** * *
63892395 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGAGATAAAT
*
63892433 CTCGCAGGCTTCGTGCTGGTATTATATCCGAGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGAGATAAAT
* *
63892471 CCCGCAGGCCTAGTGCTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTATTATAT
63892498 TCGGGCCTTC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 57 1.00
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.29
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGAGATAAAT
Found at i:63892575 original size:43 final size:43
Alignment explanation
Indices: 63892495--63892576 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 43
63892485 GCTGGTATTA
* ** ** *
63892495 TATTCGGGCCTTCGTTCCTAGCAGGTTTCGTGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGATGTG
*
63892538 TATTTGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
63892577 AATGATATGT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 32 1.00
ACGTcount: A:0.12, C:0.22, G:0.33, T:0.33
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGATGTG
Found at i:63892961 original size:44 final size:45
Alignment explanation
Indices: 63892895--63893005 Score: 124
Period size: 44 Copynumber: 2.5 Consensus size: 45
63892885 TTGATTTGAT
* * *
63892895 TATTCGGGCCTTT-GAGCTTAGCAGACTATAATGTCGGT-AAGAT-A
1 TATTCGGG-CTTTCGAGCCTAGCAGACTATAAAGCCGGTGAA-ATGA
*
63892939 TATTCGGGCTTTCGAGCCTAGCAGGCTATAAAGCCGGTGAAATGA
1 TATTCGGGCTTTCGAGCCTAGCAGACTATAAAGCCGGTGAAATGA
*
63892984 TA-TCGGGC-CTCGAGCCTAGCAG
1 TATTCGGGCTTTCGAGCCTAGCAG
63893006 GTGAAATGCC
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
43 17 0.29
44 37 0.63
45 5 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (45 bp):
TATTCGGGCTTTCGAGCCTAGCAGACTATAAAGCCGGTGAAATGA
Found at i:63897674 original size:42 final size:44
Alignment explanation
Indices: 63897609--63897718 Score: 136
Period size: 42 Copynumber: 2.5 Consensus size: 44
63897599 ACATTCATGT
*
63897609 AATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACG-A
1 AATCAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACGTA
* * *
63897652 AATCATATA-CGATGCTAATGTCCCAGACATGGTCTTACACGTA
1 AATCAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACGTA
* *
63897695 AATCTCAA-ATCGATGCCAACGTCC
1 AATC-AAATATCGATGCCAATGTCC
63897719 TATACGTGGT
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 29 0.52
43 14 0.25
44 13 0.23
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (44 bp):
AATCAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACGTA
Found at i:63901575 original size:39 final size:39
Alignment explanation
Indices: 63901528--63901710 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
63901518 AATGTTCGAG
63901528 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
63901567 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
63901606 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
63901645 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
63901685 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
63901711 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:63908421 original size:41 final size:41
Alignment explanation
Indices: 63908376--63908493 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
63908366 TGAAAGATAA
63908376 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
63908417 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63908447 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63908488 ATGTAG
1 ATGTAG
63908494 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:63908432 original size:71 final size:71
Alignment explanation
Indices: 63908344--63908507 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
63908334 GAGATGTATC
63908344 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63908409 AGGACA
66 AGGACA
63908415 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63908480 AGGACA
66 AGGACA
63908486 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
63908508 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:63915770 original size:41 final size:41
Alignment explanation
Indices: 63915725--63915842 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
63915715 TGAAAGATAA
63915725 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
63915766 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63915796 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63915837 ATGTAG
1 ATGTAG
63915843 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:63915781 original size:71 final size:71
Alignment explanation
Indices: 63915693--63915856 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
63915683 GAGATGTATC
63915693 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63915758 AGGACA
66 AGGACA
63915764 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63915829 AGGACA
66 AGGACA
63915835 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
63915857 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:63919133 original size:39 final size:39
Alignment explanation
Indices: 63919086--63919267 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
63919076 AATGTTCGAG
63919086 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
63919125 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
63919164 TGATATCCGGGCTAAGCCC-AAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
63919202 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
63919242 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
63919268 GTTTGAACGA
Statistics
Matches: 124, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
38 30 0.24
39 60 0.48
40 34 0.27
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:63922722 original size:2 final size:2
Alignment explanation
Indices: 63922715--63922750 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
63922705 AGTATAGTTG
* *
63922715 AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63922751 TCGGCCATCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (2 bp):
AT
Found at i:63923427 original size:29 final size:29
Alignment explanation
Indices: 63923392--63923465 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
63923382 GTTGTGAGAT
* *
63923392 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
63923421 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
63923450 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63923466 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:63931012 original size:18 final size:18
Alignment explanation
Indices: 63930989--63931028 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
63930979 AATCATTTCC
63930989 ACCTCT-AGCATGACCACG
1 ACCTCTCAGC-TGACCACG
*
63931007 ACCTCTCGGCTGACCACG
1 ACCTCTCAGCTGACCACG
63931025 ACCT
1 ACCT
63931029 TTCGGCAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.23, C:0.42, G:0.17, T:0.17
Consensus pattern (18 bp):
ACCTCTCAGCTGACCACG
Found at i:63931033 original size:18 final size:18
Alignment explanation
Indices: 63930999--63931034 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
63930989 ACCTCTAGCA
63930999 TGACCACGACCTCTCGGC
1 TGACCACGACCTCTCGGC
*
63931017 TGACCACGACCTTTCGGC
1 TGACCACGACCTCTCGGC
63931035 AGTTACTGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.42, G:0.22, T:0.19
Consensus pattern (18 bp):
TGACCACGACCTCTCGGC
Done.