Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 206 of 325
Found at i:63935104 original size:21 final size:21
Alignment explanation
Indices: 63935080--63935123 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
63935070 TTGTTTGTTC
* *
63935080 TTTCTTTCTTTTTCTATTTTA
1 TTTCTTTATTTTTCTATTATA
*
63935101 TTTCTTTATTTTTTTATTATA
1 TTTCTTTATTTTTCTATTATA
63935122 TT
1 TT
63935124 ATTATATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (21 bp):
TTTCTTTATTTTTCTATTATA
Found at i:63949672 original size:13 final size:13
Alignment explanation
Indices: 63949656--63949682 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63949646 TTAAGGGAGG
63949656 CATAGGTTTGAAT
1 CATAGGTTTGAAT
63949669 CATAGGTTTGAAT
1 CATAGGTTTGAAT
63949682 C
1 C
63949683 CCATGGCAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (13 bp):
CATAGGTTTGAAT
Found at i:63951565 original size:40 final size:40
Alignment explanation
Indices: 63951521--63951643 Score: 149
Period size: 40 Copynumber: 3.1 Consensus size: 40
63951511 GTGCTAAGTG
* *
63951521 ACTAAATCCGGACTAAGATCCGACGGCATACGTGCGAGTT
1 ACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTT
* * * *
63951561 ACTAAATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCT
1 ACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTT
** *
63951601 ACTAAATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTT
1 ACTAAATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTT
63951641 ACT
1 ACT
63951644 GTAACCGGGC
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 68 0.99
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.22
Consensus pattern (40 bp):
ACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTT
Found at i:63951664 original size:80 final size:80
Alignment explanation
Indices: 63951489--63951673 Score: 200
Period size: 80 Copynumber: 2.3 Consensus size: 80
63951479 CGAATGATAT
* *
63951489 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATACGT
1 CGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATACGT
63951554 GCGAGTTACTAAATC
66 GCGAGTTACTAAATC
* ** *
63951569 CGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGGCAT
1 CGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGGCAT
* *
63951630 TCGTGCGAGTTACTGTAA-C
62 ACGTGCGAGTTACT-AAATC
*
63951649 CGGGCTATGTCCCGAAGGCATTTGA
1 CGGGCTAAGTCCCGAAGGC-TTTGA
63951674 ATGTGTAGCC
Statistics
Matches: 88, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 76 0.86
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.23
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATACGT
GCGAGTTACTAAATC
Found at i:63953621 original size:54 final size:54
Alignment explanation
Indices: 63953574--63953838 Score: 361
Period size: 54 Copynumber: 4.9 Consensus size: 54
63953564 ATTACCAAAG
* * * * *
63953574 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTT
*
63953628 TACCCTCGATTTACAAAATTATCGTTTTACCTTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * *
63953682 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * *
63953736 TACCCTCGATTTACAAAATTATCATTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * *
63953790 TACCCTTGATTTACAGAATTA-CTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTATC-GTTTTACCCTCGATTTACAGAATTAC
63953839 AGAAATACCC
Statistics
Matches: 188, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
53 1 0.01
54 187 0.99
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:63953626 original size:27 final size:27
Alignment explanation
Indices: 63953574--63953838 Score: 323
Period size: 27 Copynumber: 9.8 Consensus size: 27
63953564 ATTACCAAAG
* *
63953574 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
63953601 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
63953628 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
63953655 TACCTTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
63953682 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
63953709 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
63953736 TACCCTCGATTTACAAAATTATCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
63953763 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
63953790 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
63953817 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
63953839 AGAAATACCC
Statistics
Matches: 206, Mismatches: 32, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 206 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:63953847 original size:27 final size:27
Alignment explanation
Indices: 63953474--63954040 Score: 149
Period size: 27 Copynumber: 20.9 Consensus size: 27
63953464 AATACTTTAG
* * *
63953474 TTTACTAAAATTACCGAAATACCCTTAGT
1 TTTAC-AAAATTACAGAAATACCC-TCGA
*
63953503 TTGTA-AAAA-TACTGAAATACCCTCGA
1 TT-TACAAAATTACAGAAATACCCTCGA
** *
63953529 TTTGTAAAATTACTA-AAATACCTTCGA
1 TTTACAAAATTAC-AGAAATACCCTCGA
* ** * *
63953556 CTTGTAAAATTACCA-AAGTACCCCCGA
1 TTTACAAAATTA-CAGAAATACCCTCGA
* *** *
63953583 TTTACAGAATTATC-GTTTTACCCCCGA
1 TTTACAAAATTA-CAGAAATACCCTCGA
* * ***
63953610 TTTACATAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
*** *
63953637 TTTACAAAATTATC-GTTTTACCTTCGA
1 TTTACAAAATTA-CAGAAATACCCTCGA
* * ***
63953664 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
* * *** *
63953691 TTTATAAAATTACCGTTTTACCCTTGA
1 TTTACAAAATTACAGAAATACCCTCGA
* * ***
63953718 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
*** *
63953745 TTTACAAAATTATCA-TTTTACCGTCGA
1 TTTACAAAATTA-CAGAAATACCCTCGA
* * *** *
63953772 TTTATAGAATTACTA-TTTTACCCTTGA
1 TTTACAAAATTAC-AGAAATACCCTCGA
* ***
63953799 TTTACAGAATTACTA-TTTTACCCTCGA
1 TTTACAAAATTAC-AGAAATACCCTCGA
*
63953826 TTTACAAAATTACAGAAATACCCTCAA
1 TTTACAAAATTACAGAAATACCCTCGA
** *
63953853 TTTGTAAAATTATCA-AAATACCC-CTA
1 TTTACAAAATTA-CAGAAATACCCTCGA
** *
63953879 GTTTGTAAAATTACCA-AAATACCACT-GG
1 -TTTACAAAATTA-CAGAAATACC-CTCGA
*** * *
63953907 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACAGAAATACCCTCGA
**
63953934 TTTGTAAAATTACCA-AAATACCC-CTGA
1 TTTACAAAATTA-CAGAAATACCCTC-GA
* * *
63953961 TTTACAAAGTTACAAAAATACCCTTGA
1 TTTACAAAATTACAGAAATACCCTCGA
* * * *
63953988 CTTT-CTAAAAATTATAGAAATACCATTGG
1 -TTTAC--AAAATTACAGAAATACCCTCGA
*
63954017 TTTACAAAATTACTGAAATACCCT
1 TTTACAAAATTACAGAAATACCCT
63954041 TGGTTTGTAG
Statistics
Matches: 441, Mismatches: 71, Indels: 54
0.78 0.13 0.10
Matches are distributed among these distances:
25 1 0.00
26 20 0.05
27 381 0.86
28 17 0.04
29 20 0.05
30 2 0.00
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACAGAAATACCCTCGA
Found at i:63953875 original size:81 final size:81
Alignment explanation
Indices: 63953628--63953966 Score: 238
Period size: 81 Copynumber: 4.2 Consensus size: 81
63953618 ATTACCGTTT
* * * * * * *** *
63953628 TACCCTCGATTTACAAAATTA-TCGTTTTACCTTCGATTTACAGAATTACTGTTTTACCCTCGAT
1 TACCCTTGATTTACAGAATTACT-ATTTTACCCTCGATTTACAAAATTACAGAAATACCCTCAAT
****
63953692 TTATAAAATTACCGTTT
65 TTATAAAATTACCAAAA
* *** * *
63953709 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTATCA-TTTTACCGTCGAT
1 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTA-CAGAAATACCCTCAAT
* * ***
63953773 TTATAGAATTACTATTT
65 TTATAAAATTACCAAAA
63953790 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACAGAAATACCCTCAATT
1 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACAGAAATACCCTCAATT
* *
63953855 TGTAAAATTATCAAAA
66 TATAAAATTACCAAAA
* * * *** * *** *
63953871 TACCCCTAGTTTGTA-A-AATTACCAAAATACCACT-GGTTTGTGAAATTACCGAAATACCCTCA
1 TA-CCCTTGATT-TACAGAATTACTATTTTACC-CTCGATTTACAAAATTACAGAAATACCCTCA
*
63953933 ATTTGTAAAATTACCAAAA
63 ATTTATAAAATTACCAAAA
*
63953952 TACCCCTGATTTACA
1 TACCCTTGATTTACA
63953967 AAGTTACAAA
Statistics
Matches: 214, Mismatches: 37, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
79 2 0.01
80 9 0.04
81 189 0.88
82 12 0.06
83 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (81 bp):
TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACAGAAATACCCTCAATT
TATAAAATTACCAAAA
Found at i:63953979 original size:81 final size:81
Alignment explanation
Indices: 63953832--63953982 Score: 234
Period size: 81 Copynumber: 1.9 Consensus size: 81
63953822 TCGATTTACA
* * *
63953832 AAATTACAGAAATACCCTCAATTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACAAAA
63953897 ATACCACTGGTTTGTG
66 ATACCACTGGTTTGTG
*
63953913 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTACAA
1 AAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTA-AAA-TTACAA
63953976 AAATACC
64 AAATACC
63953983 CTTGACTTTC
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
79 2 0.03
80 6 0.09
81 56 0.88
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (81 bp):
AAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACAAAA
ATACCACTGGTTTGTG
Found at i:63954130 original size:27 final size:27
Alignment explanation
Indices: 63954099--63954191 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
63954089 TACCCCTATT
*
63954099 AGGTAAAAAGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
* *
63954126 GGGTAAAGTGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
*
63954153 AGGTAAAGTGACCGTAATA-CCCCTGTA
1 AGGTAAAATGACCGTAA-AGCCCCTGTA
*
63954180 TGGTAAAATGAC
1 AGGTAAAATGAC
63954192 GAATATGCCC
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.19
Consensus pattern (27 bp):
AGGTAAAATGACCGTAAAGCCCCTGTA
Found at i:63955451 original size:9 final size:9
Alignment explanation
Indices: 63955439--63955495 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
63955429 TTTGATAAAC
63955439 ATGATATGT
1 ATGATATGT
*
63955448 ATGATATGCAC
1 ATGATATG--T
*
63955459 ATGACATGT
1 ATGATATGT
*
63955468 ATGATATGCAC
1 ATGATATG--T
63955479 ATGATATGT
1 ATGATATGT
63955488 ATGATATG
1 ATGATATG
63955496 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:63955462 original size:20 final size:20
Alignment explanation
Indices: 63955437--63955499 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
63955427 ATTTTGATAA
63955437 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
63955457 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
63955477 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
63955497 ACA
1 ACA
63955500 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:63955609 original size:24 final size:23
Alignment explanation
Indices: 63955553--63955719 Score: 219
Period size: 24 Copynumber: 7.0 Consensus size: 23
63955543 GAGGAAGTGA
63955553 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
63955576 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
63955599 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
63955623 CAAAAGGGCTTACGCCCTAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
63955647 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
63955670 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
63955695 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
63955719 A
1 A
63955720 TGATAAAGCA
Statistics
Matches: 128, Mismatches: 11, Indels: 9
0.86 0.07 0.06
Matches are distributed among these distances:
23 42 0.33
24 75 0.59
25 11 0.09
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:63955622 original size:47 final size:47
Alignment explanation
Indices: 63955553--63955719 Score: 221
Period size: 47 Copynumber: 3.5 Consensus size: 47
63955543 GAGGAAGTGA
*
63955553 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* * *
63955599 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCTAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
63955647 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
*
63955695 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
63955720 TGATAAAGCA
Statistics
Matches: 106, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
47 64 0.60
48 30 0.28
49 12 0.11
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:63955669 original size:71 final size:71
Alignment explanation
Indices: 63955553--63955718 Score: 253
Period size: 71 Copynumber: 2.3 Consensus size: 71
63955543 GAGGAAGTGA
* *
63955553 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
63955618 GTTATC
66 GTTATC
* *
63955624 AAAAGGGCTTACGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
63955689 GTTATT
66 GTTATC
*
63955695 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
63955719 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 76 0.88
72 10 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:63955946 original size:31 final size:31
Alignment explanation
Indices: 63955911--63955974 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
63955901 CGTTTACAGT
*
63955911 AAAGGCTTAGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTAGGCCCAGTAATATGAAATATGA
* **
63955942 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTAGGCCCAGTAATATGAAATATGA
63955973 AA
1 AA
63955975 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTAGGCCCAGTAATATGAAATATGA
Found at i:63960987 original size:19 final size:19
Alignment explanation
Indices: 63960953--63960989 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
63960943 ATTAATTAAG
*
63960953 TTTAATTAAATTAAACATA
1 TTTAATTAAATAAAACATA
*
63960972 TTTAATTAACTAAAACAT
1 TTTAATTAAATAAAACAT
63960990 CACCAACCAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (19 bp):
TTTAATTAAATAAAACATA
Found at i:63963801 original size:29 final size:29
Alignment explanation
Indices: 63963744--63963802 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
63963734 CCTTATCCAT
*
63963744 TTTTTTAATAAATGACCCAATATTTTTTA
1 TTTTTTAATAAATGACCCAATATTGTTTA
* *
63963773 TTTTTTATGTAAATGGCCCAATA-TGTTTA
1 TTTTTTA-ATAAATGACCCAATATTGTTTA
63963802 T
1 T
63963803 ACTTCTTCTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 13 0.50
30 13 0.50
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.51
Consensus pattern (29 bp):
TTTTTTAATAAATGACCCAATATTGTTTA
Found at i:63964417 original size:39 final size:39
Alignment explanation
Indices: 63964360--63964435 Score: 125
Period size: 39 Copynumber: 1.9 Consensus size: 39
63964350 TATCTAAGAG
* * *
63964360 AAAGCTCTCCAAAGTATTAGAAACACAAAGAAAAAATTA
1 AAAGCTCCCCAAAATATTAGAAACAAAAAGAAAAAATTA
63964399 AAAGCTCCCCAAAATATTAGAAACAAAAAGAAAAAAT
1 AAAGCTCCCCAAAATATTAGAAACAAAAAGAAAAAAT
63964436 CTGAAATCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.59, C:0.16, G:0.09, T:0.16
Consensus pattern (39 bp):
AAAGCTCCCCAAAATATTAGAAACAAAAAGAAAAAATTA
Found at i:63964679 original size:3 final size:3
Alignment explanation
Indices: 63964666--63964758 Score: 86
Period size: 3 Copynumber: 32.3 Consensus size: 3
63964656 GAAAATTTTC
* * * * * *
63964666 TCT TTT TCT TCT TCT TCT TCT TCT TCT TCC TCA TCC TCT TCT T-G TAT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* *
63964713 TCT TCT TCT TAT T-T TCT TCT TCT TCT T-T TCT TCT TC- TCT GCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
63964758 T
1 T
63964759 TTTTTTTCTT
Statistics
Matches: 74, Mismatches: 12, Indels: 8
0.79 0.13 0.09
Matches are distributed among these distances:
2 7 0.09
3 67 0.91
ACGTcount: A:0.03, C:0.30, G:0.02, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:63964729 original size:11 final size:12
Alignment explanation
Indices: 63964674--63964749 Score: 59
Period size: 11 Copynumber: 6.3 Consensus size: 12
63964664 TCTCTTTTTC
*
63964674 TTCTTCTTCTTC
1 TTCTTCTTCTTA
*
63964686 TTCTTCTTCCTCA
1 TTCTTCTT-CTTA
*
63964699 TCCTCTTCTT-GTA
1 T--TCTTCTTCTTA
63964712 TTCTTCTTCTTA
1 TTCTTCTTCTTA
*
63964724 TT-TTCTTCTTC
1 TTCTTCTTCTTA
*
63964735 TTCTT-TTCTTC
1 TTCTTCTTCTTA
63964746 TTCT
1 TTCT
63964750 CTGCTTCTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
11 27 0.51
12 14 0.26
13 5 0.09
15 7 0.13
ACGTcount: A:0.04, C:0.30, G:0.01, T:0.64
Consensus pattern (12 bp):
TTCTTCTTCTTA
Found at i:63964757 original size:14 final size:14
Alignment explanation
Indices: 63964663--63964758 Score: 86
Period size: 14 Copynumber: 6.7 Consensus size: 14
63964653 TTTGAAAATT
*
63964663 TTCTCTTTTTCTTC
1 TTCTCTTCTTCTTC
63964677 TTCTTCTTCTTCTTC
1 TTC-TCTTCTTCTTC
* *
63964692 TTCCTCATCCTCTTC
1 TT-CTCTTCTTCTTC
* *
63964707 TTGTATTCTTCTTC
1 TTCTCTTCTTCTTC
* *
63964721 TTATTTTCTTCTTC
1 TTCTCTTCTTCTTC
*
63964735 TTCTTTTCTTCTTC
1 TTCTCTTCTTCTTC
63964749 -TCTGCTTCTT
1 TTCT-CTTCTT
63964759 TTTTTTTCTT
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
13 3 0.04
14 41 0.60
15 23 0.34
16 1 0.01
ACGTcount: A:0.03, C:0.30, G:0.02, T:0.65
Consensus pattern (14 bp):
TTCTCTTCTTCTTC
Found at i:63964775 original size:22 final size:22
Alignment explanation
Indices: 63964712--63964768 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
63964702 TCTTCTTGTA
* * *
63964712 TTCTTCTTCTTATTTTCTTCTTC
1 TTCTT-TTCTTCTTCTCTGCTTC
63964735 TTCTTTTCTTCTTCTCTGCTTC
1 TTCTTTTCTTCTTCTCTGCTTC
*
63964757 TT-TTTTTTTCTT
1 TTCTTTTCTTCTT
63964769 TTACTGCCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 9 0.30
22 16 0.53
23 5 0.17
ACGTcount: A:0.02, C:0.25, G:0.02, T:0.72
Consensus pattern (22 bp):
TTCTTTTCTTCTTCTCTGCTTC
Found at i:63966575 original size:40 final size:40
Alignment explanation
Indices: 63966508--63966659 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
63966498 AAATTGAATG
* * * *
63966508 ATATCCGGGCTAAGCCCCAAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
63966548 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
63966588 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
63966628 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
63966660 ACGTGGTTAT
Statistics
Matches: 89, Mismatches: 20, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
39 3 0.03
40 84 0.94
41 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:63966673 original size:40 final size:40
Alignment explanation
Indices: 63966546--63966675 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
63966536 ATGCTGGAAA
* * *
63966546 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
63966586 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
63966626 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
63966666 TTATATCCGG
1 TTATATCCGG
63966676 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:63974585 original size:40 final size:40
Alignment explanation
Indices: 63974500--63974650 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
63974490 AATTGAATGA
* * * **
63974500 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
63974540 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
63974581 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
63974620 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
63974651 ACGTGTTATA
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:63978064 original size:79 final size:79
Alignment explanation
Indices: 63977934--63978081 Score: 194
Period size: 79 Copynumber: 1.9 Consensus size: 79
63977924 TTGAATGATA
*
63977934 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGG-AATT
1 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
63977998 GTGCTAGTGGCTAC
66 GTGCTAGTGGCTAC
* * * *
63978012 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
63978075 TTTGTGC
63 ATTGTGC
63978082 ACGTGGTTAT
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
78 16 0.27
79 37 0.62
80 7 0.12
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (79 bp):
ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
GTGCTAGTGGCTAC
Found at i:63978095 original size:40 final size:40
Alignment explanation
Indices: 63977969--63978097 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
63977959 ATGCTGGAAA
* * *
63977969 TTATATCCGGGTTAAGACCCGAAGG-AATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
63978008 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
63978048 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
63978088 TTATATCCGG
1 TTATATCCGG
63978098 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
39 23 0.32
40 48 0.68
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:63981463 original size:40 final size:40
Alignment explanation
Indices: 63981404--63981611 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
63981394 CAATTGAATG
* * * *
63981404 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
63981444 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
63981484 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
63981524 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
63981564 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
63981604 ATATCCGG
1 ATATCCGG
63981612 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:63981542 original size:80 final size:80
Alignment explanation
Indices: 63981405--63981611 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
63981395 AATTGAATGA
* * ** * * *
63981405 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
63981470 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
63981483 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
63981548 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
63981565 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
63981612 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:63989622 original size:40 final size:40
Alignment explanation
Indices: 63989563--63989770 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
63989553 CAATTGAATG
* * * *
63989563 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
63989603 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
63989643 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
63989683 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
63989723 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
63989763 ATATCCGG
1 ATATCCGG
63989771 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:63989701 original size:80 final size:80
Alignment explanation
Indices: 63989564--63989770 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
63989554 AATTGAATGA
* * ** * * *
63989564 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
63989629 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
63989642 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
63989707 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
63989724 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
63989771 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:63992482 original size:43 final size:42
Alignment explanation
Indices: 63992376--63992485 Score: 114
Period size: 42 Copynumber: 2.6 Consensus size: 42
63992366 AATTTGAGAT
* * * * *
63992376 TTACGTGTAAGACAATGTCTGGGACATTGGCATTGTATTTAA
1 TTACATGTAAGACCACGTCTGGGACAGTGGCATCGTATTTAA
* * * *
63992418 TTTCATGTAGGACC-CTCTCTGGGACAGTGGCATCGATATTTGA
1 TTACATGTAAGACCAC-GTCTGGGACAGTGGCATCG-TATTTAA
63992461 TTACATGTAAGACCACGTCTGGGAC
1 TTACATGTAAGACCACGTCTGGGAC
63992486 TTTGGCATTG
Statistics
Matches: 53, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
42 26 0.49
43 26 0.49
44 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGACCACGTCTGGGACAGTGGCATCGTATTTAA
Found at i:63992492 original size:43 final size:43
Alignment explanation
Indices: 63992321--63992493 Score: 129
Period size: 43 Copynumber: 4.0 Consensus size: 43
63992311 ACATAGGATT
* * * * ** *
63992321 TCGATATGTGATTTCGTGTAAGACTACGTCTGGGATGTTGTCA
1 TCGATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCA
* * *
63992364 TC-A-ATTTGAGATTTACGTGTAAGACAATGTCTGGGACATTGGCA
1 TCGATATTT--GA-TTACATGTAAGACCACGTCTGGGACATTGGCA
* * * * * *
63992408 TTG-TATTTAATTTCATGTAGGACC-CTCTCTGGGACAGTGGCA
1 TCGATATTTGATTACATGTAAGACCAC-GTCTGGGACATTGGCA
*
63992450 TCGATATTTGATTACATGTAAGACCACGTCTGGGACTTTGGCA
1 TCGATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCA
63992493 T
1 T
63992494 TGTATGAGCT
Statistics
Matches: 99, Mismatches: 23, Indels: 16
0.72 0.17 0.12
Matches are distributed among these distances:
41 3 0.03
42 27 0.27
43 37 0.37
44 28 0.28
45 4 0.04
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (43 bp):
TCGATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCA
Found at i:63994194 original size:7 final size:7
Alignment explanation
Indices: 63994182--63994234 Score: 97
Period size: 7 Copynumber: 7.4 Consensus size: 7
63994172 TATACTTTTA
63994182 TTTATTT
1 TTTATTT
63994189 TTTATTT
1 TTTATTT
63994196 TTTATTT
1 TTTATTT
63994203 TTTATTT
1 TTTATTT
63994210 TTTATTT
1 TTTATTT
63994217 TTTATTTT
1 TTTA-TTT
63994225 TTTATTT
1 TTTATTT
63994232 TTT
1 TTT
63994235 TTCAAACATA
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
7 38 0.84
8 7 0.16
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTATTT
Found at i:64002594 original size:44 final size:42
Alignment explanation
Indices: 64002460--64002615 Score: 127
Period size: 43 Copynumber: 3.6 Consensus size: 42
64002450 AGTACAATGC
* * * * *
64002460 CAACGTCCCAGACGTGGTTTTACATGTAATCAAATATCGATGC
1 CAACGTCCCAGACATGGTCTTACACGAAATCAAATA-CGATGT
** * * * *
64002503 CATTGTCCTAAATAGGGTCTTACACGAAATCAAATACGATGT
1 CAACGTCCCAGACATGGTCTTACACGAAATCAAATACGATGT
* *
64002545 CAACGTCTCAGACATGGTCTTACACTTAAATCATAAGT-CGATG-
1 CAACGTCCCAGACATGGTCTTACAC-GAAATCA-AA-TACGATGT
*
64002588 CTAACGTCCCAGACGTGGTCTTACACGA
1 C-AACGTCCCAGACATGGTCTTACACGA
64002616 TAACACATAT
Statistics
Matches: 87, Mismatches: 22, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
42 23 0.26
43 34 0.39
44 29 0.33
45 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (42 bp):
CAACGTCCCAGACATGGTCTTACACGAAATCAAATACGATGT
Found at i:64007401 original size:23 final size:22
Alignment explanation
Indices: 64007371--64007443 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 22
64007361 AGATTTTTCC
*
64007371 TAAATATTATCACTAAATAATCT
1 TAAATATTATCATTAAATAAT-T
64007394 TAAATATTATCAATTAAATAATT
1 TAAATATTATC-ATTAAATAATT
*
64007417 CTAAATATTATTATTAAATAATT
1 -TAAATATTATCATTAAATAATT
64007440 TAAA
1 TAAA
64007444 ATTTAAAAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.09
23 23 0.50
24 19 0.41
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (22 bp):
TAAATATTATCATTAAATAATT
Found at i:64007666 original size:23 final size:22
Alignment explanation
Indices: 64007615--64007666 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
64007605 CTCTCCTCTT
64007615 TGCTTTTTGTTCCAATTTAACC
1 TGCTTTTTGTTCCAATTTAACC
*
64007637 TGCTTTTTGTTCCAATTTAGCC
1 TGCTTTTTGTTCCAATTTAACC
64007659 TGCTTTTT
1 TGCTTTTT
64007667 TTAAGAGTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.13, C:0.21, G:0.12, T:0.54
Consensus pattern (22 bp):
TGCTTTTTGTTCCAATTTAACC
Found at i:64014002 original size:58 final size:58
Alignment explanation
Indices: 64013933--64014106 Score: 348
Period size: 58 Copynumber: 3.0 Consensus size: 58
64013923 AAAAATTAAG
64013933 CTCTTCTTGCTCCATTTGATAATACCACAATTGTGCCTTTCCCGTCAAGTGAAAACCA
1 CTCTTCTTGCTCCATTTGATAATACCACAATTGTGCCTTTCCCGTCAAGTGAAAACCA
64013991 CTCTTCTTGCTCCATTTGATAATACCACAATTGTGCCTTTCCCGTCAAGTGAAAACCA
1 CTCTTCTTGCTCCATTTGATAATACCACAATTGTGCCTTTCCCGTCAAGTGAAAACCA
64014049 CTCTTCTTGCTCCATTTGATAATACCACAATTGTGCCTTTCCCGTCAAGTGAAAACCA
1 CTCTTCTTGCTCCATTTGATAATACCACAATTGTGCCTTTCCCGTCAAGTGAAAACCA
64014107 GTTAGACTCC
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 116 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (58 bp):
CTCTTCTTGCTCCATTTGATAATACCACAATTGTGCCTTTCCCGTCAAGTGAAAACCA
Found at i:64018179 original size:15 final size:16
Alignment explanation
Indices: 64018159--64018188 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
64018149 TTTTGATTAT
64018159 TTTAGGG-TTTAGTGG
1 TTTAGGGTTTTAGTGG
64018174 TTTAGGGTTTTAGTG
1 TTTAGGGTTTTAGTG
64018189 TTTTCTAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.13, C:0.00, G:0.37, T:0.50
Consensus pattern (16 bp):
TTTAGGGTTTTAGTGG
Found at i:64018298 original size:16 final size:17
Alignment explanation
Indices: 64018270--64018303 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
64018260 ATTAATTAAA
64018270 TTAGGGTTTAGGGTTTT
1 TTAGGGTTTAGGGTTTT
64018287 TTAGGG-TTAGGGTTTT
1 TTAGGGTTTAGGGTTTT
64018303 T
1 T
64018304 GATTATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.12, C:0.00, G:0.35, T:0.53
Consensus pattern (17 bp):
TTAGGGTTTAGGGTTTT
Found at i:64018336 original size:24 final size:24
Alignment explanation
Indices: 64018269--64018336 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 24
64018259 AATTAATTAA
*
64018269 ATTAGGG-TTTAGGGTTTTTTAGG
1 ATTAGGGTTTTAGTGTTTTTTAGG
*
64018292 GTTAGGGTTTT--TGATTATTTTAGG
1 ATTAGGGTTTTAGTG-TT-TTTTAGG
64018316 ATTAGGGTTTTAGTGTTTTTT
1 ATTAGGGTTTTAGTGTTTTTT
64018337 TAGGGAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
22 1 0.03
23 8 0.22
24 24 0.65
25 2 0.05
26 2 0.05
ACGTcount: A:0.16, C:0.00, G:0.29, T:0.54
Consensus pattern (24 bp):
ATTAGGGTTTTAGTGTTTTTTAGG
Found at i:64018357 original size:142 final size:142
Alignment explanation
Indices: 64018132--64018734 Score: 733
Period size: 142 Copynumber: 4.1 Consensus size: 142
64018122 TTTTGCCCTT
*
64018132 TTTTTTAGGGTTAGGGTTTTTGATTATTTTAGGGTTTAGTGGTTTAGGGTTTTAGTGTTTTCTAA
1 TTTTTTAGGGTTAGGGTTTTTGATTATTTTA-GG---A-----TTAGGGTTTTAGTGTTTTTTAA
*
64018197 GGGGAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGAAATTAAAAAAAT
57 GGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGAAATTAAAAAAAT
*
64018262 TAATTAAATTAGGGTTTAGGG
122 CAATTAAATTAGGGTTTAGGG
*
64018283 TTTTTTAGGGTTAGGGTTTTTGATTATTTTAGGATTAGGGTTTTAGTGTTTTTTTAGGGAAAAAT
1 TTTTTTAGGGTTAGGGTTTTTGATTATTTTAGGATTAGGGTTTTAGTGTTTTTTAAGGGAAAAAT
64018348 TAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGGAAA-TAAAAAAATCAATTAAA
66 TAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTAT-GAAATTAAAAAAATCAATTAAA
64018412 TTAGGGTTTAGGG
130 TTAGGGTTTAGGG
* * * * * *
64018425 TTTTTTAAGGTTGGGGTTTTTGATTGTTTTAGGATTAAGGTTTTAGTATTTTTTTAAGGAAAAAA
1 TTTTTTAGGGTTAGGGTTTTTGATTATTTTAGGATTAGGGTTTTAGT-GTTTTTTAAGGGAAAAA
*
64018490 TTAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGAAAAT-AAAAAATCAATTAAA
65 TTAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGAAATTAAAAAAATCAATTAAA
*
64018554 TTAGGGTTTAAGG
130 TTAGGGTTTAGGG
* * ** * * *
64018567 TTTTTGAAGGTTAGAATTTTTAATTGTTTTAGGATAAGGGTTTTAGTGGTTTAGGGTTTAATGTT
1 TTTTTTAGGGTTAGGGTTTTTGATTATTTTAGGATTAGGGTTTTAGT-GTTT----TTTAA-G--
* * * *
64018632 TTTTAAGAGAAATTAATTTAATTAGAGTTGATGGTTAATTAATTAAATTAACTATTAAATTAAAA
58 -----GGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGAAATTAAAA
* **
64018697 AAGATCAATTAAATTAAGGTTTATAG
118 AA-ATCAATTAAATTAGGGTTTAGGG
64018723 TTTTTTAGGGTT
1 TTTTTTAGGGTT
64018735 TATTAATTAA
Statistics
Matches: 403, Mismatches: 32, Indels: 29
0.87 0.07 0.06
Matches are distributed among these distances:
142 216 0.54
143 62 0.15
146 5 0.01
147 2 0.00
150 2 0.00
151 31 0.08
154 50 0.12
155 5 0.01
156 30 0.07
ACGTcount: A:0.34, C:0.01, G:0.21, T:0.44
Consensus pattern (142 bp):
TTTTTTAGGGTTAGGGTTTTTGATTATTTTAGGATTAGGGTTTTAGTGTTTTTTAAGGGAAAAAT
TAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGAAATTAAAAAAATCAATTAAAT
TAGGGTTTAGGG
Found at i:64019067 original size:126 final size:126
Alignment explanation
Indices: 64018797--64019188 Score: 515
Period size: 126 Copynumber: 3.1 Consensus size: 126
64018787 TATTGCCATG
* * * *
64018797 GTAGTATCTGAAAAAATAAATTTGAGAAGATGTTTCTAAACAAATAATGTCAAAAAAGCTTCAAG
1 GTAGTATCTGATAAAATAATTTTGAGAAGATGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAG
* *
64018862 AAGGATGCACT-TCAGCAAAATTATAGAAAAAAA-CT-TCAATATAGACACTCTTTTGCTACA
66 AAGGATGCACTGTCAGCAAAATTACA-AAAAAAAGCTCTCACT-TAGACACTCTTTTGCTACA
* * *
64018922 GTAGTATCTGATAAAATAATTTTGAGAAGATATTTCTGAATAAACT-GTGTCAAAAACGCTTCAA
1 GTAGTATCTGATAAAATAATTTTGAGAAGATGTTTCTAAACAAA-TAGTGTCAAAAACGCTTCAA
**
64018986 GAAGGATGCACTGTCAGCAAAATTACAAAAAAAAGCTCTCACTTAGATGCTCTTTTGCTACA
65 GAAGGATGCACTGTCAGCAAAATTACAAAAAAAAGCTCTCACTTAGACACTCTTTTGCTACA
* * *
64019048 GTAGTATCTGATAAAATAATGTTGAGAAAATGTTTCTAAACAAATAGTGTCAAAAACGCTTTAAG
1 GTAGTATCTGATAAAATAATTTTGAGAAGATGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAG
* * * ** * * * *
64019113 AAGGACGCATTGTCAGTAAAATTACGGAAAAAAGTTCCCACGTGGACACTCTTTTGCTACA
66 AAGGATGCACTGTCAGCAAAATTACAAAAAAAAGCTCTCACTTAGACACTCTTTTGCTACA
64019174 GTAGTATCTGA-AAAA
1 GTAGTATCTGATAAAA
64019189 GCCTTAGACT
Statistics
Matches: 234, Mismatches: 28, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
125 79 0.34
126 151 0.65
127 4 0.02
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (126 bp):
GTAGTATCTGATAAAATAATTTTGAGAAGATGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAG
AAGGATGCACTGTCAGCAAAATTACAAAAAAAAGCTCTCACTTAGACACTCTTTTGCTACA
Found at i:64023412 original size:7 final size:7
Alignment explanation
Indices: 64023397--64023428 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
64023387 TTATATAAGT
64023397 AATACTA
1 AATACTA
*
64023404 AATAATA
1 AATACTA
64023411 AATACTA
1 AATACTA
64023418 AATACTA
1 AATACTA
64023425 AATA
1 AATA
64023429 GGAAACGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:64027042 original size:9 final size:9
Alignment explanation
Indices: 64027012--64027043 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
64027002 ATTTATATTT
64027012 TATTAAAAA
1 TATTAAAAA
*
64027021 TATAAAAAA
1 TATTAAAAA
64027030 TATTAAAAA
1 TATTAAAAA
64027039 TATTA
1 TATTA
64027044 CCGTAGTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (9 bp):
TATTAAAAA
Found at i:64027737 original size:30 final size:30
Alignment explanation
Indices: 64027693--64027753 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
64027683 TGTTGGCACA
*
64027693 GGTGGTTGTATGGGCACTGTTGATGGGCCC
1 GGTGATTGTATGGGCACTGTTGATGGGCCC
*
64027723 GGTGATTGTGTGGGCACTGTTGATGGGCCC
1 GGTGATTGTATGGGCACTGTTGATGGGCCC
64027753 G
1 G
64027754 CATCGTCATC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.10, C:0.16, G:0.44, T:0.30
Consensus pattern (30 bp):
GGTGATTGTATGGGCACTGTTGATGGGCCC
Found at i:64028265 original size:7 final size:7
Alignment explanation
Indices: 64028250--64028281 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
64028240 TTATATAAGT
64028250 AATACTA
1 AATACTA
*
64028257 AATAATA
1 AATACTA
64028264 AATACTA
1 AATACTA
64028271 AATACTA
1 AATACTA
64028278 AATA
1 AATA
64028282 GGAAACGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:64032254 original size:9 final size:9
Alignment explanation
Indices: 64032224--64032254 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
64032214 ATTTATATTT
64032224 TATTAAAAA
1 TATTAAAAA
*
64032233 TATAAAAAA
1 TATTAAAAA
64032242 TATTAAAAA
1 TATTAAAAA
64032251 TATT
1 TATT
64032255 GCCGTATTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
TATTAAAAA
Found at i:64032288 original size:38 final size:39
Alignment explanation
Indices: 64032245--64032326 Score: 96
Period size: 39 Copynumber: 2.1 Consensus size: 39
64032235 TAAAAAATAT
* *
64032245 TAAAAA-TATTGCCGT-ATTGAAAATAACATTTATTTTAA
1 TAAAAATTATTGCC-TAATTGAAAAGAACATTTATTGTAA
* * *
64032283 TAAAAATTATTGGCTAATTTAAAAGAACATTTATTGTAG
1 TAAAAATTATTGCCTAATTGAAAAGAACATTTATTGTAA
64032322 TAAAA
1 TAAAA
64032327 TTAAAAAAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
38 7 0.19
39 30 0.81
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.38
Consensus pattern (39 bp):
TAAAAATTATTGCCTAATTGAAAAGAACATTTATTGTAA
Found at i:64032945 original size:30 final size:30
Alignment explanation
Indices: 64032906--64032966 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
64032896 TGTTGGCATA
* * * *
64032906 GGTGGTTGTGTGGGCACTGTTGATGGGCCC
1 GGTGATTGTGTGGCCACTGCTAATGGGCCC
*
64032936 GGTGATTGTGTGGCCGCTGCTAATGGGCCC
1 GGTGATTGTGTGGCCACTGCTAATGGGCCC
64032966 G
1 G
64032967 CGTCGTCATC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.08, C:0.20, G:0.44, T:0.28
Consensus pattern (30 bp):
GGTGATTGTGTGGCCACTGCTAATGGGCCC
Found at i:64034222 original size:23 final size:21
Alignment explanation
Indices: 64034165--64034211 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
64034155 CAATTAAGTA
64034165 ATATATTAAATTTAGTAAATT
1 ATATATTAAATTTAGTAAATT
64034186 ATATATTAAATTTAGTAAATT
1 ATATATTAAATTTAGTAAATT
64034207 ATATA
1 ATATA
64034212 AATTCATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (21 bp):
ATATATTAAATTTAGTAAATT
Found at i:64036179 original size:24 final size:24
Alignment explanation
Indices: 64036152--64036204 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
64036142 ATAATGTATT
*
64036152 ATAAAGTTAGTATATAAAGAATTG
1 ATAAAATTAGTATATAAAGAATTG
** *
64036176 ATAAAATTTTTTTATAAAGAATTG
1 ATAAAATTAGTATATAAAGAATTG
64036200 ATAAA
1 ATAAA
64036205 TTTTTAATAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (24 bp):
ATAAAATTAGTATATAAAGAATTG
Found at i:64036209 original size:24 final size:24
Alignment explanation
Indices: 64036164--64036209 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
64036154 AAAGTTAGTA
64036164 TATAAAGAATTGATAAAATTTTTT
1 TATAAAGAATTGATAAAATTTTTT
64036188 TATAAAGAATTGAT-AAATTTTT
1 TATAAAGAATTGATAAAATTTTT
64036210 AATACATGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (24 bp):
TATAAAGAATTGATAAAATTTTTT
Found at i:64037252 original size:9 final size:9
Alignment explanation
Indices: 64037238--64037262 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
64037228 ATATAAAGAC
64037238 TAAAATGAA
1 TAAAATGAA
64037247 TAAAATGAA
1 TAAAATGAA
64037256 TAAAATG
1 TAAAATG
64037263 TAAAATATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (9 bp):
TAAAATGAA
Found at i:64042091 original size:28 final size:28
Alignment explanation
Indices: 64042051--64042151 Score: 159
Period size: 28 Copynumber: 3.6 Consensus size: 28
64042041 GTTCAAATGG
64042051 TATAGCACTAAGTGTGCAAGTTTGATTA
1 TATAGCACTAAGTGTGCAAGTTTGATTA
64042079 TATAGCACTAAGTGTGCAAGTTTGATTA
1 TATAGCACTAAGTGTGCAAGTTTGATTA
* * *
64042107 TATAGCACTAAGTGTGCGAGTTCGACTA
1 TATAGCACTAAGTGTGCAAGTTTGATTA
64042135 T-TAAGCACTAAGTGTGC
1 TAT-AGCACTAAGTGTGC
64042152 GGGCTTATTA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
27 1 0.01
28 68 0.99
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.33
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCAAGTTTGATTA
Found at i:64042152 original size:28 final size:28
Alignment explanation
Indices: 64042026--64042152 Score: 148
Period size: 28 Copynumber: 4.5 Consensus size: 28
64042016 TCACAAATTG
* * **
64042026 GCACTAAGTGTGCGGGTTCAAATGGTATA
1 GCACTAAGTGTGCGAGTTC-GATTATATA
* *
64042055 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTCGATTATATA
* *
64042083 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTCGATTATATA
*
64042111 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTCGATTATAT-A
64042139 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
64042153 GGCTTATTAC
Statistics
Matches: 88, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
27 1 0.01
28 71 0.81
29 16 0.18
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTCGATTATATA
Found at i:64043781 original size:48 final size:48
Alignment explanation
Indices: 64043713--64043891 Score: 277
Period size: 48 Copynumber: 3.7 Consensus size: 48
64043703 TTGCGCTAAA
* *
64043713 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATG
* *
64043761 TGTGCCTGTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATA
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATG
* * **
64043809 TGTGCCAGTGTAAGACCATGTCTGGGCCATGGCATCAACGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATG
*
64043857 TGTCCCAGTGTAAGACCATGTCTAGGACATGGCAT
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCAT
64043892 TAGTACTTTA
Statistics
Matches: 120, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 120 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (48 bp):
TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATG
Found at i:64043876 original size:96 final size:96
Alignment explanation
Indices: 64043712--64043891 Score: 306
Period size: 96 Copynumber: 1.9 Consensus size: 96
64043702 ATTGCGCTAA
* ** * *
64043712 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCTGTGTAAGAC
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTCCCAGTGTAAGAC
64043777 CATGTCTAGGACATGGCATCGGCGATGATAT
66 CATGTCTAGGACATGGCATCGGCGATGATAT
*
64043808 ATGTGCCAGTGTAAGACCATGTCTGGGCCATGGCATCAACGATGATATGTGTCCCAGTGTAAGAC
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTCCCAGTGTAAGAC
64043873 CATGTCTAGGACATGGCAT
66 CATGTCTAGGACATGGCAT
64043892 TAGTACTTTA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 78 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.26
Consensus pattern (96 bp):
ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTCCCAGTGTAAGAC
CATGTCTAGGACATGGCATCGGCGATGATAT
Found at i:64045164 original size:19 final size:18
Alignment explanation
Indices: 64045136--64045171 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
64045126 TACACGGCCT
64045136 AGGGACACAGGCGTGTCA
1 AGGGACACAGGCGTGTCA
64045154 AGGGCACACAGGCGTGTC
1 AGGG-ACACAGGCGTGTC
64045172 CTTGTGTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.25, C:0.25, G:0.39, T:0.11
Consensus pattern (18 bp):
AGGGACACAGGCGTGTCA
Found at i:64053513 original size:48 final size:48
Alignment explanation
Indices: 64053437--64053709 Score: 397
Period size: 48 Copynumber: 5.7 Consensus size: 48
64053427 TCGCTCTAAA
*
64053437 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
* * *
64053485 TGTGCTTGTGTAAGACCATATCTAGGACATGGCATCGGCGATGATATG
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
* * *
64053533 TGTGCTTCTGTAAGACCATGTTTGGGACATGGCATCGGCGATGATATG
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
* *
64053581 TGTGCCTCTGTAAGACCATGTTTGGGACATGGCATCGGCGATGATATG
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
*
64053629 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
** *
64053677 TG-GATTCATGTAAGACCATGT-TGGAGACATGGC
1 TGTGCCT-GTGTAAGACCATGTCTGG-GACATGGC
64053710 TTGGTACTTT
Statistics
Matches: 207, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 4 0.02
48 203 0.98
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (48 bp):
TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
Found at i:64053697 original size:144 final size:144
Alignment explanation
Indices: 64053437--64053709 Score: 442
Period size: 144 Copynumber: 1.9 Consensus size: 144
64053427 TCGCTCTAAA
* **
64053437 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATGTGTGCTTGTGTAAGACC
1 TGTGCCTCTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATGTGTGCCAGTGTAAGACC
*
64053502 ATATCTAGGACATGGCATCGGCGATGATATGTGTGCTTCTGTAAGACCATGTTTGG-GACATGGC
66 ATATCTAGGACATGGCATCGGCGATGATATGTGTGATTCTGTAAGACCATG-TTGGAGACATGGC
64053566 ATCGGCGATGATATG
130 ATCGGCGATGATATG
* *
64053581 TGTGCCTCTGTAAGACCATGTTTGGGACATGGCATCGGCGATGATATGTGTGCCAGTGTAAGACC
1 TGTGCCTCTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATGTGTGCCAGTGTAAGACC
* *
64053646 ATGTCTGGGACATGGCATCGGCGATGATATGTG-GATTCATGTAAGACCATGTTGGAGACATGGC
66 ATATCTAGGACATGGCATCGGCGATGATATGTGTGATTC-TGTAAGACCATGTTGGAGACATGGC
64053710 TTGGTACTTT
Statistics
Matches: 119, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
143 8 0.07
144 111 0.93
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (144 bp):
TGTGCCTCTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATGTGTGCCAGTGTAAGACC
ATATCTAGGACATGGCATCGGCGATGATATGTGTGATTCTGTAAGACCATGTTGGAGACATGGCA
TCGGCGATGATATG
Found at i:64055588 original size:36 final size:36
Alignment explanation
Indices: 64055546--64055617 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
64055536 ATATACTTGG
*
64055546 CCACAATTTATTTATAAACATCTAGTTCAATACCAT
1 CCACAATTCATTTATAAACATCTAGTTCAATACCAT
64055582 CCACAATTCATTTATAAACATCTAGTTCAATACCAT
1 CCACAATTCATTTATAAACATCTAGTTCAATACCAT
64055618 TTCCAAAACA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.39, C:0.24, G:0.03, T:0.35
Consensus pattern (36 bp):
CCACAATTCATTTATAAACATCTAGTTCAATACCAT
Found at i:64069995 original size:30 final size:29
Alignment explanation
Indices: 64069907--64070007 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 29
64069897 ATAGTGAATC
* * *
64069907 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAAATTTTAAACT
*
64069936 CGCACACTTAGTGCTATAGAA--TCAAACT
1 CGCACACTTAGTGCTATA-AATTTTAAACT
64069964 CGCACACTTAGTGCTGA-ACAATTTTAAACT
1 CGCACACTTAGTGCT-ATA-AATTTTAAACT
64069994 CGCACACTTAGTGC
1 CGCACACTTAGTGC
64070008 CAATCTTGTC
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
28 22 0.35
29 19 0.31
30 21 0.34
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATAAATTTTAAACT
Found at i:64072478 original size:48 final size:48
Alignment explanation
Indices: 64072420--64072580 Score: 286
Period size: 48 Copynumber: 3.4 Consensus size: 48
64072410 ATATACACAC
*
64072420 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
64072468 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
64072516 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
64072564 ATCTCATATATATTTCA
1 ATCTCATACATATTTCA
64072581 GCAATAGCTT
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 110 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:64084849 original size:43 final size:43
Alignment explanation
Indices: 64084784--64084873 Score: 126
Period size: 43 Copynumber: 2.1 Consensus size: 43
64084774 AGTTCGATGT
* * * *
64084784 AATTCTAGGTATGGATTGGTTGATACTACATAATTCTATTGTG
1 AATTCTAGGTATGGATTAGTTGATACAACATAATGCCATTGTG
* *
64084827 AATTCTAGGTCTGGATTAGTTGATGCAACATAATGCCATTGTG
1 AATTCTAGGTATGGATTAGTTGATACAACATAATGCCATTGTG
64084870 AATT
1 AATT
64084874 GTAGACAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (43 bp):
AATTCTAGGTATGGATTAGTTGATACAACATAATGCCATTGTG
Found at i:64091523 original size:52 final size:52
Alignment explanation
Indices: 64091409--64091586 Score: 231
Period size: 51 Copynumber: 3.5 Consensus size: 52
64091399 ACTAGTGACT
* *
64091409 CAAGTGTGGTACTATGTGAAGGCCACTTTGTG-A-ACAGATAGC-TTGGTTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
* *
64091458 CAAGTGTGGTACTATGTTAAGGTCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
* * *
64091510 CAAGTGTGGTACTATGTGAATGCCACTTTGTGAAG-AAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTC-A
* *
64091561 CAAGGGTGGTACTATGTGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
64091587 GGGGTATCCG
Statistics
Matches: 113, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
49 30 0.27
50 3 0.03
51 42 0.37
52 38 0.34
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
Found at i:64097958 original size:48 final size:48
Alignment explanation
Indices: 64097849--64098026 Score: 223
Period size: 48 Copynumber: 3.7 Consensus size: 48
64097839 GCAGTACATA
* *
64097849 TGATCCTATGTAAGACCATTTCTGGGACATGGCATTGG-ATCGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* *
64097896 TGATCCCACGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * * * *
64097944 TGGTCCCATGTAAGACCATATCTGGGATAAGGCATTGGCATTGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
*** * *
64097992 TGATTTTATGTAAGACCACGTCTAGGACATGGCAT
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCAT
64098027 CGATATGAGA
Statistics
Matches: 110, Mismatches: 20, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 34 0.31
48 76 0.69
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (48 bp):
TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
Found at i:64099508 original size:43 final size:41
Alignment explanation
Indices: 64099422--64099546 Score: 144
Period size: 43 Copynumber: 2.9 Consensus size: 41
64099412 CATAGACTTA
* * *
64099422 TGATTTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATT
1 TGATTT-CATGTAAGACCCTGTCTGGGACAT-GGCATTGTATT
*
64099465 TGATTTCATGTAAGACCCTGTCTGGGATAGTGGCATTGATATT
1 TGATTTCATGTAAGACCCTGTCTGGGACA-TGGCATTG-TATT
*
64099508 TGATTACATGTAAGACCAC-GTCTGGGACATTGGCATTGT
1 TGATTTCATGTAAGACC-CTGTCTGGGACA-TGGCATTGT
64099547 GACATCCCTA
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
42 27 0.38
43 44 0.61
44 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.34
Consensus pattern (41 bp):
TGATTTCATGTAAGACCCTGTCTGGGACATGGCATTGTATT
Found at i:64102336 original size:49 final size:49
Alignment explanation
Indices: 64102264--64102770 Score: 754
Period size: 49 Copynumber: 10.3 Consensus size: 49
64102254 TACATGATAG
64102264 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAA
64102313 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA-A-A
*
64102366 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAA
*
64102415 TATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA-A-A
* *
64102466 TATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAA
*
64102515 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAA
*
64102564 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA-A-A
* *
64102615 TATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAA
* *
64102664 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT--A
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAA
* * * * *
64102711 TATATGTGATAGGGCC-AAGTGGCCAACGTGATGGATGTAAAAGTGT--A
1 TATATGTGATAAGGCCTAA-TGGCCGATGTGATGAATGTGAAAGTGTAAA
*
64102758 TAAATGTGATAAG
1 TATATGTGATAAG
64102771 TCCCGAAGGG
Statistics
Matches: 430, Mismatches: 19, Indels: 20
0.92 0.04 0.04
Matches are distributed among these distances:
46 2 0.00
47 52 0.12
49 231 0.54
51 98 0.23
52 1 0.00
53 46 0.11
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAA
Found at i:64102492 original size:100 final size:100
Alignment explanation
Indices: 64102264--64102759 Score: 790
Period size: 100 Copynumber: 5.0 Consensus size: 100
64102254 TACATGATAG
*
64102264 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
64102329 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
66 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
64102366 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
64102431 TAATGGCCGATGTAATGAATGTGAAAGTGTATATA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
64102466 TATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
64102531 TAATGGCCGATGTGATGAATGTGAAAGTG--TATA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
64102564 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGG
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGG
*
64102629 CCTAATGGCCGATGTAATGAATGTGAAAGTG--TATA
64 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
64102664 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * * *
64102727 -AAGTGGCCAACGTGATGGATGTAAAAGTGTATA
66 TAA-TGGCCGATGTGATGAATGTGAAAGTGTATA
64102760 AATGTGATAA
Statistics
Matches: 373, Mismatches: 16, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
95 2 0.01
96 38 0.10
98 49 0.13
100 192 0.51
102 92 0.25
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (100 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:64102560 original size:149 final size:149
Alignment explanation
Indices: 64102264--64102759 Score: 822
Period size: 149 Copynumber: 3.3 Consensus size: 149
64102254 TACATGATAG
64102264 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA-A-ATATATGTGATAAGG
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGG
*
64102327 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATATGTGATAAGGCCTAATGGCCGA
66 CCTAATGGCCGATGTAATGAATGTGAAAGTG----TATATATATGTGATAAGGCCTAATGGCCGA
64102392 TGTGATGAATGTGAAAGTGTATA
127 TGTGATGAATGTGAAAGTGTATA
*
64102415 TATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATATATATATGTGATAAGG
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGG
64102480 CCTAATGGCCGATGTAATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
66 CCTAATGGCCGATGTAATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
64102545 ATGAATGTGAAAGTGTATA
131 ATGAATGTGAAAGTGTATA
*
64102564 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGG
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGG
* *
64102629 CCTAATGGCCGATGTAATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTG
66 CCTAATGGCCGATGTAATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
64102694 ATGAATGTGAAAGTG--TA
131 ATGAATGTGAAAGTGTATA
* * * * *
64102711 TATATGTGATAGGGCC-AAGTGGCCAACGTGATGGATGTAAAAGTGTATA
1 TATATGTGATAAGGCCTAA-TGGCCGATGTGATGAATGTGAAAGTGTATA
64102760 AATGTGATAA
Statistics
Matches: 330, Mismatches: 12, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
146 2 0.01
147 42 0.13
149 194 0.59
151 46 0.14
152 1 0.00
153 45 0.14
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (149 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGG
CCTAATGGCCGATGTAATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATA
Found at i:64115109 original size:23 final size:23
Alignment explanation
Indices: 64115068--64115111 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
64115058 GACCCCTAAT
64115068 ATGCATAATTGAATGATTTATGA
1 ATGCATAATTGAATGATTTATGA
*
64115091 ATGCATGA-TGAATGCATTTAT
1 ATGCATAATTGAATG-ATTTAT
64115112 TATTAGCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.39
Consensus pattern (23 bp):
ATGCATAATTGAATGATTTATGA
Found at i:64120485 original size:17 final size:16
Alignment explanation
Indices: 64120453--64120483 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64120443 CAATCTTTAT
*
64120453 AAAATTTTTGTTTTTG
1 AAAATCTTTGTTTTTG
64120469 AAAATCTTTGTTTTT
1 AAAATCTTTGTTTTT
64120484 TGTGAACCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.03, G:0.10, T:0.61
Consensus pattern (16 bp):
AAAATCTTTGTTTTTG
Found at i:64121563 original size:27 final size:27
Alignment explanation
Indices: 64121465--64121563 Score: 110
Period size: 27 Copynumber: 3.6 Consensus size: 27
64121455 GAACAAACAA
* * *
64121465 TGTGACAGAGTCACCACATACAGATAAT
1 TGTGGCAGAGCCACCAGAT-CAGATAAT
* * *
64121493 CGTGGCAGAGCCACCAAAACAGAT-AT
1 TGTGGCAGAGCCACCAGATCAGATAAT
64121519 ATGTGGCAGAGCCACCAGATCAGATAAT
1 -TGTGGCAGAGCCACCAGATCAGATAAT
*
64121547 TGTGGCATAGCCACCAG
1 TGTGGCAGAGCCACCAG
64121564 GACGCTTCCT
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
26 2 0.03
27 42 0.70
28 16 0.27
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.17
Consensus pattern (27 bp):
TGTGGCAGAGCCACCAGATCAGATAAT
Found at i:64123685 original size:68 final size:65
Alignment explanation
Indices: 64123566--64123813 Score: 220
Period size: 68 Copynumber: 3.8 Consensus size: 65
64123556 TAGATGGTAT
* * * *
64123566 GTAGCTAGGTCACATGTGTAATAC-AAGATGTATACCATGT-GTACAAGAGAGCTACGAGACATT
1 GTAGCTAGGTCACATGGGTGATACTATGATGTACACCATGTAG-ACAAGAGAGCTACGAG--A-T
*
64123629 ATGAG
62 A-GAA
* * *
64123634 GTAGCTAGGTCGCATGGGTGATACTATG-TGTACACCATGTAGACAAAAGAGCTACGAGATAGAT
1 GTAGCTAGGTCACATGGGTGATACTATGATGTACACCATGTAGACAAGAGAGCTACGAGATAGAA
** * * * * * * *
64123698 GTAGCTAGGTTGCATGTGTGGTTCCAGGTGAAGGACACCATGTAAACAAGAGAGCTACGAGATA-
1 GTAGCTAGGTCACATGGGTGATACTA--TGATGTACACCATGTAGACAAGAGAGCTACGAGATAG
64123762 AA
64 AA
*
64123764 GTGGCTAGGTCACATGGGTGATACTATG-TGTACACCATGT-GTACAAGAGA
1 GTAGCTAGGTCACATGGGTGATACTATGATGTACACCATGTAG-ACAAGAGA
64123814 CCCAAAATTA
Statistics
Matches: 147, Mismatches: 27, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
63 18 0.12
64 25 0.17
65 2 0.01
66 23 0.16
67 29 0.20
68 47 0.32
69 3 0.02
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (65 bp):
GTAGCTAGGTCACATGGGTGATACTATGATGTACACCATGTAGACAAGAGAGCTACGAGATAGAA
Found at i:64127066 original size:37 final size:37
Alignment explanation
Indices: 64127013--64127112 Score: 182
Period size: 37 Copynumber: 2.7 Consensus size: 37
64127003 CGAATAGTCC
*
64127013 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
64127050 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
64127087 CCACACGTAGTCATCGGGTCTTACCC
1 CCACACGTAGTCATCGGGTCTTACCC
64127113 AGAATATATT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:64127314 original size:48 final size:48
Alignment explanation
Indices: 64127256--64127497 Score: 457
Period size: 48 Copynumber: 5.0 Consensus size: 48
64127246 ATATACACAC
*
64127256 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
64127304 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
64127352 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
64127400 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
64127448 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
64127496 AT
1 AT
64127498 ATTTATCTTG
Statistics
Matches: 191, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 191 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:64139834 original size:8 final size:8
Alignment explanation
Indices: 64139821--64139845 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
64139811 CAGTACCTGG
64139821 ATCACAAT
1 ATCACAAT
64139829 ATCACAAT
1 ATCACAAT
64139837 ATCACAAT
1 ATCACAAT
64139845 A
1 A
64139846 ACCCCTAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (8 bp):
ATCACAAT
Found at i:64139877 original size:236 final size:235
Alignment explanation
Indices: 64139465--64139936 Score: 863
Period size: 236 Copynumber: 2.0 Consensus size: 235
64139455 TCAACGGGCC
64139465 TGCTCACACAAGCTATGGGTCAAGACGTAGATACACGGTGCTACTCACACAAGCTGTAAGTAACC
1 TGCTCACACAAGCTATGGGTCAAGACGTAGATACACGGTGCTACTCACACAAGCTGTAAGTAACC
*
64139530 ACAATACATGACAGTATACTTAGCCACAGGTAGGACATACAGGACCAGCACCTGGATCACAATAT
66 ACAACACATGACAGTATACTTAGCCACAGGTAGGACATACAGGACCAGCACCTGGATCACAATAT
*
64139595 CATAATATCACAATAACCCCTAATGACATGTCATTCATATCCTAATCTATTCCTAAGGTTCGACC
131 CACAATATCACAATAACCCCTAATGACATGTCATTCATATCCTAATCTATTCCTAAGGTTCGACC
* *
64139660 GGGGTTTTCACGTTTGTCGAATCATCGTCGAACATGTCCA
196 AGGATTTTCACGTTTGTCGAATCATCGTCGAACATGTCCA
*
64139700 TGCTCACACAAGCTATGGGTTAAGACGTAGATACACGGTGCTACTCACACAAGCTGTCAAGTAAC
1 TGCTCACACAAGCTATGGGTCAAGACGTAGATACACGGTGCTACTCACACAAGCTGT-AAGTAAC
* * *
64139765 CGCAACACATGATAGTATACTTAGCCACAGGTAGGACATACAGGACCAGTACCTGGATCACAATA
65 CACAACACATGACAGTATACTTAGCCACAGGTAGGACATACAGGACCAGCACCTGGATCACAATA
64139830 TCACAATATCACAATAACCCCTAATGACATGTCATTCATATCCTAATCTATTCCTAAGGTTCGAC
130 TCACAATATCACAATAACCCCTAATGACATGTCATTCATATCCTAATCTATTCCTAAGGTTCGAC
64139895 CAGGATTTTCACGTTTGTCGAATCATCGTCGAACATGTCCA
195 CAGGATTTTCACGTTTGTCGAATCATCGTCGAACATGTCCA
64139936 T
1 T
64139937 AGTCTCATAT
Statistics
Matches: 228, Mismatches: 8, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
235 56 0.25
236 172 0.75
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (235 bp):
TGCTCACACAAGCTATGGGTCAAGACGTAGATACACGGTGCTACTCACACAAGCTGTAAGTAACC
ACAACACATGACAGTATACTTAGCCACAGGTAGGACATACAGGACCAGCACCTGGATCACAATAT
CACAATATCACAATAACCCCTAATGACATGTCATTCATATCCTAATCTATTCCTAAGGTTCGACC
AGGATTTTCACGTTTGTCGAATCATCGTCGAACATGTCCA
Found at i:64140264 original size:27 final size:25
Alignment explanation
Indices: 64140216--64140268 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 25
64140206 GTTTTATTTT
64140216 ATTAACCTTAATAAATAAATTACTAA
1 ATTAACCTTAATAAATAAATTA-TAA
64140242 ATTAACCTTTAATAAA-AACATTATAA
1 ATTAACC-TTAATAAATAA-ATTATAA
64140268 A
1 A
64140269 ACATCTAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (25 bp):
ATTAACCTTAATAAATAAATTATAA
Found at i:64141913 original size:20 final size:20
Alignment explanation
Indices: 64141875--64141931 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
64141865 CATAACCAAT
64141875 GAAC-AAAAATAAA-TAAAA
1 GAACAAAAAATAAATTAAAA
*
64141893 GAACAAAAAATAAATTTAAA
1 GAACAAAAAATAAATTAAAA
*
64141913 GTAA-AGAAAATAAA-TAAAA
1 G-AACAAAAAATAAATTAAAA
64141932 TAAAATCCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
18 4 0.12
19 13 0.39
20 14 0.42
21 2 0.06
ACGTcount: A:0.74, C:0.04, G:0.07, T:0.16
Consensus pattern (20 bp):
GAACAAAAAATAAATTAAAA
Found at i:64144305 original size:46 final size:48
Alignment explanation
Indices: 64144217--64144488 Score: 155
Period size: 46 Copynumber: 5.9 Consensus size: 48
64144207 TGGGTAAGGT
* * *
64144217 GCCGATGACATGTCCTAGACATGGTCTTACACT-AGCACTCATC-C-TT
1 GCCGATG-CATATCCCAGACATGGTCTTACACTGAGCACTCATCTCATA
* *
64144263 GTCGATGCCATATCCCATACATGGTCTTACACTGA-CTA-TCATCTCATA
1 GCCGATG-CATATCCCAGACATGGTCTTACACTGAGC-ACTCATCTCATA
* * *
64144311 GCCGATGCATGTCCCAGACAT-GTCTTACACTG-GC-TTACGTCTCA-A
1 GCCGATGCATATCCCAGACATGGTCTTACACTGAGCACT-CATCTCATA
* * ** * * *
64144356 GGTCGATGCATGTCCTGGACAT-GTCTTATACT-AGCCCTCGTCTCGAT-
1 -GCCGATGCATATCCCAGACATGGTCTTACACTGAGCACTCATCTC-ATA
* * * *
64144403 GTCGATGCCAT-TCCCAGACATGGTCTTACACTG-GCTCTCATAAT-ATG
1 GCCGATG-CATATCCCAGACATGGTCTTACACTGAGCACTCAT-CTCATA
* * *
64144450 GCTGATGCATGTCCCAGACAT-GTCTTACACT-AGCCCTCA
1 GCCGATGCATATCCCAGACATGGTCTTACACTGAGCACTCA
64144489 ATAACCCATA
Statistics
Matches: 183, Mismatches: 24, Indels: 38
0.75 0.10 0.16
Matches are distributed among these distances:
45 2 0.01
46 123 0.67
47 50 0.27
48 8 0.04
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (48 bp):
GCCGATGCATATCCCAGACATGGTCTTACACTGAGCACTCATCTCATA
Found at i:64144418 original size:139 final size:140
Alignment explanation
Indices: 64144219--64144480 Score: 370
Period size: 139 Copynumber: 1.9 Consensus size: 140
64144209 GGTAAGGTGC
* *
64144219 CGATGACATGTCCTAGACATGGTCTTACACTAGCACTCATCCTTGTCGATGCCATATCCCATACA
1 CGATGACATGTCCTAGACATGGTCTTACACTAGCACTCATCCATGTCGATGCCATATCCCAGACA
*
64144284 TGGTCTTACACTGACTATCAT-CTCATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTA
66 TGGTCTTACACTGACTATCATAAT-ATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTA
64144348 CGTCTCAAGGT
130 CGTCTCAAGGT
* * * *
64144359 CGATG-CATGTCCTGGACAT-GTCTTATACTAGCCCTCGTCTCGATGTCGATGCCAT-TCCCAGA
1 CGATGACATGTCCTAGACATGGTCTTACACTAGCACTCATC-C-ATGTCGATGCCATATCCCAGA
* * * *
64144421 CATGGTCTTACACTGGCTCTCATAATATGGCTGATGCATGTCCCAGACATGTCTTACACT
64 CATGGTCTTACACTGACTATCATAATATAGCCGATGCATGTCCCAGACATGTCTTACACT
64144481 AGCCCTCAAT
Statistics
Matches: 108, Mismatches: 11, Indels: 7
0.86 0.09 0.06
Matches are distributed among these distances:
138 17 0.16
139 73 0.68
140 18 0.17
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (140 bp):
CGATGACATGTCCTAGACATGGTCTTACACTAGCACTCATCCATGTCGATGCCATATCCCAGACA
TGGTCTTACACTGACTATCATAATATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAC
GTCTCAAGGT
Found at i:64146210 original size:11 final size:11
Alignment explanation
Indices: 64146193--64146312 Score: 92
Period size: 11 Copynumber: 11.1 Consensus size: 11
64146183 TGATATTAAA
64146193 AATATATACAT
1 AATATATACAT
*
64146204 AACATATA-AT
1 AATATATACAT
64146214 AATA-ATA-AT
1 AATATATACAT
* *
64146223 AAAATATATAT
1 AATATATACAT
* *
64146234 AATATTAAAAAT
1 AATA-TATACAT
64146246 ATATATATACAT
1 A-ATATATACAT
64146258 AATATAT--AT
1 AATATATACAT
64146267 AATATATACAT
1 AATATATACAT
64146278 AATTAGTATTA-A-
1 AA-TA-TA-TACAT
64146290 AATATATACAT
1 AATATATACAT
*
64146301 AACATATACAT
1 AATATATACAT
64146312 A
1 A
64146313 TTAGAAATGA
Statistics
Matches: 89, Mismatches: 9, Indels: 22
0.74 0.08 0.18
Matches are distributed among these distances:
9 19 0.21
10 11 0.12
11 35 0.39
12 16 0.18
13 6 0.07
14 2 0.02
ACGTcount: A:0.57, C:0.06, G:0.01, T:0.36
Consensus pattern (11 bp):
AATATATACAT
Found at i:64146237 original size:17 final size:17
Alignment explanation
Indices: 64146215--64146270 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
64146205 ACATATAATA
64146215 ATAATAATAAAATATAT
1 ATAATAATAAAATATAT
*
64146232 ATAATATTAAAA-ATAT
1 ATAATAATAAAATATAT
64146248 AT-AT-ATACATAATATAT
1 ATAATAATA-A-AATATAT
64146265 ATAATA
1 ATAATA
64146271 TATACATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
14 2 0.06
15 3 0.09
16 8 0.25
17 17 0.53
18 2 0.06
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (17 bp):
ATAATAATAAAATATAT
Found at i:64146237 original size:20 final size:20
Alignment explanation
Indices: 64146202--64146297 Score: 79
Period size: 20 Copynumber: 4.6 Consensus size: 20
64146192 AAATATATAC
*
64146202 ATAACATATA-ATAATAATA
1 ATAAAATATATATAATAATA
*
64146221 ATAAAATATATATAATATTA
1 ATAAAATATATATAATAATA
64146241 A-AAATATATATATACATAATA
1 ATAAA-ATATATATA-ATAATA
* *
64146262 TATATAATATATACATAATTAGTA
1 -ATA-AA-ATATATATAA-TAATA
*
64146286 TTAAAATATATA
1 ATAAAATATATA
64146298 CATAACATAT
Statistics
Matches: 63, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
19 12 0.19
20 18 0.29
21 11 0.17
22 3 0.05
23 4 0.06
24 15 0.24
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (20 bp):
ATAAAATATATATAATAATA
Found at i:64146468 original size:27 final size:25
Alignment explanation
Indices: 64146414--64146536 Score: 87
Period size: 27 Copynumber: 5.0 Consensus size: 25
64146404 TAAGAGTATG
*
64146414 TACATAATATAATGTTAAAAATACA
1 TACATAATATAATATTAAAAATACA
* *
64146439 TACATAATATAGTTATTAAAAAATATA
1 TACATAATATA-ATATT-AAAAATACA
*
64146466 TACATAAGATAATATGTAAGAAA-A-A
1 TACATAATATAATAT-TAA-AAATACA
* ** *
64146491 T--ATAATATAGTATTCGAAATATA
1 TACATAATATAATATTAAAAATACA
*
64146514 TACATGATAT-ATA-TAAAAATACA
1 TACATAATATAATATTAAAAATACA
64146537 ATATTAAAAA
Statistics
Matches: 76, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
21 3 0.04
22 2 0.03
23 19 0.25
24 2 0.03
25 19 0.25
26 9 0.12
27 22 0.29
ACGTcount: A:0.55, C:0.06, G:0.07, T:0.33
Consensus pattern (25 bp):
TACATAATATAATATTAAAAATACA
Found at i:64148202 original size:40 final size:40
Alignment explanation
Indices: 64148157--64148286 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
64148147 CGGAATATAA
64148157 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
64148197 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
64148237 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
64148277 CCGGATATAA
1 CCGGATATAA
64148287 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:64148301 original size:40 final size:40
Alignment explanation
Indices: 64148173--64148324 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
64148163 ATAAGCATGT
* * *
64148173 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
64148213 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
64148253 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
64148293 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
64148325 CATTCAATTT
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:64148307 original size:80 final size:80
Alignment explanation
Indices: 64148173--64148324 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
64148163 ATAAGCATGT
* *
64148173 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
64148238 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
64148253 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
64148316 CCCGGATAT
64 CCCGGATAT
64148325 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:64156225 original size:40 final size:40
Alignment explanation
Indices: 64156180--64156347 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
64156170 CGGAATATAA
*
64156180 CCGGATATAAGCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * *
64156220 CCGGATAGAATG-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
64156260 CCGGATAT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
64156300 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
64156340 CCGGATAT
1 CCGGATAT
64156348 CATTCAATTT
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 102 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:64156330 original size:80 final size:80
Alignment explanation
Indices: 64156196--64156347 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
64156186 ATAAGCATGT
* *
64156196 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
64156261 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
64156276 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
64156339 CCCGGATAT
64 CCCGGATAT
64156348 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:64158305 original size:3 final size:3
Alignment explanation
Indices: 64158277--64158413 Score: 68
Period size: 3 Copynumber: 45.3 Consensus size: 3
64158267 ATGATATGAT
* *
64158277 ATA AT- ATA AT- ATA AT- ATA AAA ATA ATA ATA ATA AT- ATGA AGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA
* * * ** * *
64158319 TTA ATA ATA GTA ATA GTA ACC ATA ATG ATA ATA TATA CGTA CATGA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA -ATA -AT-A ATA
* * * *
64158368 GTA TTA ATA ATA ATA ATA ATA ATA A-A ATA ATTA ATT TTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA
64158413 A
1 A
64158414 AGTAATTAAA
Statistics
Matches: 99, Mismatches: 26, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
2 10 0.10
3 75 0.76
4 13 0.13
5 1 0.01
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:64158402 original size:21 final size:21
Alignment explanation
Indices: 64158373--64158422 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
64158363 GAATAGTATT
64158373 AATAA-TAATAATAATAATAA
1 AATAATTAATAATAATAATAA
**
64158393 AATAATTAATTTTAATAATAA
1 AATAATTAATAATAATAATAA
*
64158414 AGTAATTAA
1 AATAATTAA
64158423 AAAAAGATCG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 5 0.19
21 21 0.81
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (21 bp):
AATAATTAATAATAATAATAA
Found at i:64167001 original size:30 final size:30
Alignment explanation
Indices: 64166966--64167027 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
64166956 ATGGGGTTGT
*
64166966 CCGTGTGTCACACACGGCCTAGACACATGC
1 CCGTGTGTCACACACAGCCTAGACACATGC
64166996 CCGTGTGTCACACACAGCCTAGACACATGC
1 CCGTGTGTCACACACAGCCTAGACACATGC
64167026 CC
1 CC
64167028 ATATGTCTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.39, G:0.21, T:0.16
Consensus pattern (30 bp):
CCGTGTGTCACACACAGCCTAGACACATGC
Found at i:64170180 original size:3 final size:3
Alignment explanation
Indices: 64170172--64170421 Score: 143
Period size: 3 Copynumber: 83.0 Consensus size: 3
64170162 AGAAATATAT
* ** * * *
64170172 ATA ATA ATA ATA ATA ATA ATA ATG GCA GTA ATG ATA ATA CTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
64170220 ATA GTA ATA ATAA ACA ACA ACA ACA ACA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
64170266 ATA ATTA ATG ATA ATA AAA ATA ATA GTA A-A GAAA ATA A-A GACA A-A
1 ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA -ATA ATA
* * * * *
64170311 ATTA ATA ATA ATA GTA ATA ATA ATA ACA ATA ATA ATG GTA GTA ATA
1 A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
64170357 ATA A-A AGTA ATA ATA ATA AT- ATG TTA TGTT ATA ATA GTA A-A ATA
1 ATA ATA A-TA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA
*
64170401 ATA ATA ATA GTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA
64170422 TATTAAATTA
Statistics
Matches: 195, Mismatches: 39, Indels: 26
0.75 0.15 0.10
Matches are distributed among these distances:
2 10 0.05
3 173 0.89
4 12 0.06
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:64175633 original size:4 final size:4
Alignment explanation
Indices: 64175624--64175648 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
64175614 ATTATATGAC
64175624 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
64175649 AAAGGAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:64178095 original size:45 final size:46
Alignment explanation
Indices: 64177998--64178106 Score: 150
Period size: 45 Copynumber: 2.3 Consensus size: 46
64177988 AACTTAAGAT
*
64177998 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAG-GTGAATATGTGATAAGGC
*
64178045 CGAATGGCCAATGTGAT-ATATGTGTAA-GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGGTGAATATGTGATAAGGC
*
64178090 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
64178107 AAAGTGTGCA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
45 27 0.47
46 6 0.11
47 24 0.42
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (46 bp):
CGAATGGCCAATGTGATGAATGTGAAAGGTGAATATGTGATAAGGC
Found at i:64183796 original size:29 final size:29
Alignment explanation
Indices: 64183757--64183835 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
64183747 CTTAATAATC
*
64183757 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
64183787 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
64183816 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
64183836 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:64189708 original size:29 final size:27
Alignment explanation
Indices: 64189674--64189776 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
64189664 TACTCAATCA
*
64189674 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
64189703 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
64189732 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
64189761 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
64189777 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:64200379 original size:29 final size:27
Alignment explanation
Indices: 64200345--64200447 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
64200335 TACTCAATCA
*
64200345 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
64200374 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
64200403 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
64200432 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
64200448 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:64205591 original size:3 final size:3
Alignment explanation
Indices: 64205571--64205808 Score: 155
Period size: 3 Copynumber: 77.7 Consensus size: 3
64205561 ATAATGGCAG
* * ** *
64205571 TAA TGA TAA TAC TAA TAA TAA TTG TAA TAA TAAA CAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA
* * * * *
64205617 TAA TAA TTAA TGA TAA TAA AAA TAA TAG TAA -AGA AAA TAA -AGA CAA
1 TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA
* * *
64205663 -AA TTAA TAA TGA TAC TAA TGAA T-G TAA GTAA TAA TAA TAA TAA TAA
1 TAA -TAA TAA TAA TAA TAA T-AA TAA TAA -TAA TAA TAA TAA TAA TAA
* **
64205709 TAA TAA TAA TAA TAA TAG TAA TGG TAA TAA TAA TAA -AA GTAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
* * * *
64205754 TAA TACGT TAA GTTA TAA TAG TAA -AA TAA TAA TAA TAG TAA TAA TAA
1 TAA TA--A TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
64205801 TAA TAA TA
1 TAA TAA TA
64205809 TATTAAATTA
Statistics
Matches: 181, Mismatches: 37, Indels: 34
0.72 0.15 0.13
Matches are distributed among these distances:
2 9 0.05
3 151 0.83
4 19 0.10
5 2 0.01
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:64209356 original size:29 final size:29
Alignment explanation
Indices: 64209318--64209380 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
64209308 TGTGGCAAAG
* *
64209318 TCTAT-TGAATTCTTCCTCCATTGTTGTT
1 TCTATCTGAATTCTTCCTCCACTGTCGTT
64209346 TCTATCTGAATTCTTCCTCCACTGTCGTT
1 TCTATCTGAATTCTTCCTCCACTGTCGTT
64209375 TCTATC
1 TCTATC
64209381 AAACAAATGA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 5 0.16
29 27 0.84
ACGTcount: A:0.14, C:0.27, G:0.10, T:0.49
Consensus pattern (29 bp):
TCTATCTGAATTCTTCCTCCACTGTCGTT
Found at i:64212664 original size:40 final size:39
Alignment explanation
Indices: 64212546--64212671 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 39
64212536 TTCGAATGAT
*
64212546 ATCCGGGCTAAG-TCCCGAAGGCTTT-GTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCTTTCGTGC-AAGT-ACTAA
* * *
64212586 ATCCGGACTAAGATCC-AACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAA-GGCTTTCGTGCAAG-TACTAA
*
64212626 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCTTTCGTGCAAG-TACTAA
64212666 ATCCGG
1 ATCCGG
64212672 GTTGAGTCCC
Statistics
Matches: 72, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
39 2 0.03
40 62 0.86
41 8 0.11
ACGTcount: A:0.29, C:0.25, G:0.25, T:0.21
Consensus pattern (39 bp):
ATCCGGACTAAGATCCGAAGGCTTTCGTGCAAGTACTAA
Found at i:64212724 original size:80 final size:80
Alignment explanation
Indices: 64212546--64212733 Score: 199
Period size: 80 Copynumber: 2.3 Consensus size: 80
64212536 TTCGAATGAT
*
64212546 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCAACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCAACGGCATA
64212611 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
64212626 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAA-G
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CC-AACG
* *
64212686 GCATTCGTGCGAGTTACTGTA
61 GCATACGTGCGAGTTACT-AA
*
64212707 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
64212734 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 9, Indels: 16
0.78 0.08 0.14
Matches are distributed among these distances:
79 2 0.02
80 77 0.85
81 12 0.13
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCAACGGCATA
CGTGCGAGTTACTAA
Found at i:64214268 original size:46 final size:45
Alignment explanation
Indices: 64214124--64214275 Score: 157
Period size: 46 Copynumber: 3.3 Consensus size: 45
64214114 GGGTGTTACA
* * *
64214124 CAACGAGCTCGGGCGTTAGCATCCATAAGTGAACTCGGACTCAACT
1 CAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACT
* * *
64214170 CAACGAGTTCGGATGCCTAGTTACAT-C-TCA-CGAACTCGGACTCAACT
1 CAACGAGTTCGGA---C-A-TTGCATCCATAAGTGAACTCGGACTCAACT
*
64214217 CAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCGACT
1 CAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACT
64214263 CAACGAGTTCGGA
1 CAACGAGTTCGGA
64214276 TGCTCAACCA
Statistics
Matches: 87, Mismatches: 10, Indels: 18
0.76 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.05
44 2 0.02
45 2 0.02
46 39 0.45
47 29 0.33
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (45 bp):
CAACGAGTTCGGACATTGCATCCATAAGTGAACTCGGACTCAACT
Found at i:64214294 original size:46 final size:44
Alignment explanation
Indices: 64214151--64214294 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
64214141 AGCATCCATA
64214151 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
64214198 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
*
64214244 AGTGAACTCGGACTCGACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
64214290 AGTGA
1 AGTGA
64214295 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 32 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:64214732 original size:30 final size:30
Alignment explanation
Indices: 64214698--64214757 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
64214688 ATTTAATACG
64214698 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
64214728 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
64214758 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:64220816 original size:39 final size:39
Alignment explanation
Indices: 64220745--64220897 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
64220735 TATGGTAACC
** * *
64220745 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
64220785 TGCGCAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
64220824 CGCCCAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
64220863 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
64220898 TCGAACATTC
Statistics
Matches: 102, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 88 0.86
40 14 0.14
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:64225647 original size:14 final size:16
Alignment explanation
Indices: 64225617--64225650 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
64225607 TTGTTTGTCA
64225617 AAAAGGAGAGAAAATG
1 AAAAGGAGAGAAAATG
64225633 AAAAGGA-AG-AAATG
1 AAAAGGAGAGAAAATG
64225647 AAAA
1 AAAA
64225651 AAATGAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.50
15 2 0.11
16 7 0.39
ACGTcount: A:0.68, C:0.00, G:0.26, T:0.06
Consensus pattern (16 bp):
AAAAGGAGAGAAAATG
Found at i:64225652 original size:16 final size:17
Alignment explanation
Indices: 64225616--64225651 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
64225606 GTTGTTTGTC
64225616 AAAAAGGAGAGAAAATG
1 AAAAAGGAGAGAAAATG
64225633 -AAAAGGA-AG-AAATG
1 AAAAAGGAGAGAAAATG
64225647 AAAAA
1 AAAAA
64225652 AATGAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
14 5 0.28
15 6 0.33
16 7 0.39
ACGTcount: A:0.69, C:0.00, G:0.25, T:0.06
Consensus pattern (17 bp):
AAAAAGGAGAGAAAATG
Found at i:64230791 original size:30 final size:29
Alignment explanation
Indices: 64230690--64230823 Score: 155
Period size: 29 Copynumber: 4.6 Consensus size: 29
64230680 GTGTCGAGAT
*
64230690 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
64230719 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
64230748 TGGCACTAAGTGTGCAAGCTGGAAAAAATA
1 TGGCACTAAGTGTGCGAGCTGG-AAATATA
** *
64230778 TGGCACTGTGTGTGCGAGCT-TAAAT-TA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
64230805 CGTGGCACTAAGTGTGCGA
1 --TGGCACTAAGTGTGCGA
64230824 AATCGAGTAG
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
27 2 0.02
28 3 0.03
29 63 0.70
30 22 0.24
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:64230811 original size:59 final size:58
Alignment explanation
Indices: 64230690--64230821 Score: 158
Period size: 59 Copynumber: 2.3 Consensus size: 58
64230680 GTGTCGAGAT
** * * **
64230690 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCAAGCTGGAAAAATATGGCACTAAGTGTGCGAGCTGGAAATACG
** *
64230748 TGGCACTAAGTGTGCAAGCTGGAAAAAATATGGCACTGTGTGTGCGAGCT-TAAATTACG
1 TGGCACTAAGTGTGCAAGCTGG-AAAAATATGGCACTAAGTGTGCGAGCTGGAAA-TACG
64230807 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
64230822 GAAATCGAGT
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
58 23 0.37
59 40 0.63
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (58 bp):
TGGCACTAAGTGTGCAAGCTGGAAAAATATGGCACTAAGTGTGCGAGCTGGAAATACG
Found at i:64238779 original size:29 final size:29
Alignment explanation
Indices: 64238746--64238880 Score: 148
Period size: 29 Copynumber: 4.6 Consensus size: 29
64238736 GTGTCGAGAT
*
64238746 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
64238775 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
64238804 TGGCACTAAGTGTGCAAGCTGGAAAAAAATA
1 TGGCACTAAGTGTGCGAGCTGG--AAATATA
** *
64238835 TGGCACTGTGTGTGCGAGCT-TAAAT-TA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
64238862 CGTGGCACTAAGTGTGCGA
1 --TGGCACTAAGTGTGCGA
64238881 AATCGAGTAG
Statistics
Matches: 90, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
27 2 0.02
28 3 0.03
29 63 0.70
31 22 0.24
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:64238868 original size:60 final size:58
Alignment explanation
Indices: 64238746--64238878 Score: 151
Period size: 60 Copynumber: 2.3 Consensus size: 58
64238736 GTGTCGAGAT
** * * **
64238746 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCAAGCTGGAAAAATATGGCACTAAGTGTGCGAGCTGGAAATACG
** *
64238804 TGGCACTAAGTGTGCAAGCTGGAAAAAAATATGGCACTGTGTGTGCGAGCT-TAAATTACG
1 TGGCACTAAGTGTGCAAGCTGG--AAAAATATGGCACTAAGTGTGCGAGCTGGAAA-TACG
64238864 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
64238879 GAAATCGAGT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
58 20 0.32
59 3 0.05
60 40 0.63
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (58 bp):
TGGCACTAAGTGTGCAAGCTGGAAAAATATGGCACTAAGTGTGCGAGCTGGAAATACG
Found at i:64241546 original size:15 final size:15
Alignment explanation
Indices: 64241526--64241555 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
64241516 CTTGTAGAGA
*
64241526 TTAAATATAACTAAT
1 TTAAATAAAACTAAT
64241541 TTAAATAAAACTAAT
1 TTAAATAAAACTAAT
64241556 ACAATTAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (15 bp):
TTAAATAAAACTAAT
Found at i:64245667 original size:14 final size:15
Alignment explanation
Indices: 64245648--64245676 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
64245638 TTTAAATGAA
64245648 TTTT-AAATATAATT
1 TTTTAAAATATAATT
64245662 TTTTAAAATATAATT
1 TTTTAAAATATAATT
64245677 ACATATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTTAAAATATAATT
Found at i:64246205 original size:16 final size:16
Alignment explanation
Indices: 64246181--64246215 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
64246171 ATTATTTATC
* *
64246181 ACAGTTCTATTCTATT
1 ACAGCTCTATTCCATT
64246197 ACAGCTCTATTCCATT
1 ACAGCTCTATTCCATT
64246213 ACA
1 ACA
64246216 ATCTTATTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.26, G:0.06, T:0.40
Consensus pattern (16 bp):
ACAGCTCTATTCCATT
Found at i:64246223 original size:16 final size:16
Alignment explanation
Indices: 64246204--64246249 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
64246194 ATTACAGCTC
*
64246204 TATTCCATTACAATCT
1 TATTTCATTACAATCT
* *
64246220 TATTTCAGTACAGTCT
1 TATTTCATTACAATCT
*
64246236 TATTTCATTCCAAT
1 TATTTCATTACAAT
64246250 GAACCAAACG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.04, T:0.46
Consensus pattern (16 bp):
TATTTCATTACAATCT
Done.