Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 207 of 325
Found at i:64246491 original size:14 final size:15
Alignment explanation
Indices: 64246472--64246509 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
64246462 TTTAATTTTT
*
64246472 TTATAAACTA-AAAA
1 TTATAAAATACAAAA
64246486 TTATAAAATATCAAAA
1 TTATAAAATA-CAAAA
64246502 TTATAAAA
1 TTATAAAA
64246510 AAATTTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.43
16 12 0.57
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (15 bp):
TTATAAAATACAAAA
Found at i:64248379 original size:39 final size:38
Alignment explanation
Indices: 64248310--64248393 Score: 105
Period size: 39 Copynumber: 2.2 Consensus size: 38
64248300 TTGCATTCAA
* * * *
64248310 ATTATATATGTGCAATATCTTATATCATTTTTACAATC
1 ATTATAAATCTGCAATATCATAGATCATTTTTACAATC
* *
64248348 ATGTATAAATCTGCAATATCATAGATGATTTTTACTATC
1 AT-TATAAATCTGCAATATCATAGATCATTTTTACAATC
64248387 ATTATAA
1 ATTATAA
64248394 TATCATTCAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
38 7 0.18
39 32 0.82
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (38 bp):
ATTATAAATCTGCAATATCATAGATCATTTTTACAATC
Found at i:64255268 original size:30 final size:30
Alignment explanation
Indices: 64255229--64255285 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
64255219 TTTTATAAGT
64255229 AATTAATATTT-AT-TACTTAAAAATATTTAA
1 AATTAATATTTCATATA-TT-AAAATATTTAA
*
64255259 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
64255286 AACAAGAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.75
31 4 0.17
32 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:64256245 original size:22 final size:21
Alignment explanation
Indices: 64256220--64256291 Score: 72
Period size: 22 Copynumber: 3.3 Consensus size: 21
64256210 TTTAATAAAT
64256220 ATATAATAATTAGTAATTTTAG
1 ATATAATAATTAGTAA-TTTAG
* * ** *
64256242 ATATAAAATATTATTAATAAAT
1 ATATAATA-ATTAGTAATTTAG
64256264 ATATAATAATTAGTAAATTTAG
1 ATATAATAATTAGT-AATTTAG
64256286 ATATAA
1 ATATAA
64256292 AATATTATTA
Statistics
Matches: 38, Mismatches: 10, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
21 5 0.13
22 26 0.68
23 7 0.18
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.42
Consensus pattern (21 bp):
ATATAATAATTAGTAATTTAG
Found at i:64256251 original size:24 final size:23
Alignment explanation
Indices: 64256218--64256295 Score: 81
Period size: 24 Copynumber: 3.4 Consensus size: 23
64256208 AATTTAATAA
*
64256218 ATATATAATAATTAGTAATTTTAG
1 ATATAAAATAATTAGTAA-TTTAG
* *
64256242 ATATAAAAT-ATTATTAA--TAA
1 ATATAAAATAATTAGTAATTTAG
*
64256262 ATATATAATAATTAGTAAATTTAG
1 ATATAAAATAATTAGT-AATTTAG
64256286 ATATAAAATA
1 ATATAAAATA
64256296 TTATTATAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
20 10 0.23
21 5 0.12
22 2 0.05
23 7 0.16
24 19 0.44
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (23 bp):
ATATAAAATAATTAGTAATTTAG
Found at i:64256260 original size:44 final size:44
Alignment explanation
Indices: 64256211--64256301 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
64256201 CATTATGAAT
*
64256211 TTAATAAATATATAATAATTAGTAATTTTAGATATAAAATATTA
1 TTAATAAATATATAATAATTAGTAAATTTAGATATAAAATATTA
64256255 TTAATAAATATATAATAATTAGTAAATTTAGATATAAAATATTA
1 TTAATAAATATATAATAATTAGTAAATTTAGATATAAAATATTA
64256299 TTA
1 TTA
64256302 TAGTGTATTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (44 bp):
TTAATAAATATATAATAATTAGTAAATTTAGATATAAAATATTA
Found at i:64256271 original size:20 final size:20
Alignment explanation
Indices: 64256211--64256271 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 20
64256201 CATTATGAAT
64256211 TTAATAAATATATAATAATTA
1 TTAATAAATATATAAT-ATTA
* * *
64256232 GTAATTTTAGATATAAAATATTA
1 TTAA---TAAATATATAATATTA
64256255 TTAATAAATATATAATA
1 TTAATAAATATATAATA
64256272 ATTAGTAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
20 11 0.35
21 3 0.10
23 7 0.23
24 10 0.32
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (20 bp):
TTAATAAATATATAATATTA
Found at i:64258651 original size:29 final size:29
Alignment explanation
Indices: 64258616--64258672 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
64258606 TATATAAAAA
*
64258616 ATAATAAGTAATATAGAATAAAATATAAT
1 ATAATAAATAATATAGAATAAAATATAAT
** *
64258645 ATAATAAATGTTATATAATAAAATATAA
1 ATAATAAATAATATAGAATAAAATATAA
64258673 GTTGAATATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.33
Consensus pattern (29 bp):
ATAATAAATAATATAGAATAAAATATAAT
Found at i:64260982 original size:206 final size:205
Alignment explanation
Indices: 64260662--64261292 Score: 965
Period size: 206 Copynumber: 3.1 Consensus size: 205
64260652 GCCAGATCTA
* *
64260662 CTATGTCTTCGATTTGTTCCTTGTAAGCATAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTC
1 CTATGTCTTCGATTTGTTCCTTATAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTC
* * *
64260727 TAATCATCTGAAGGCCAGATCTGCTATATGTTTGCCCTCCGTCGAAGTGGAGATGCCAGACTTCG
66 TAATCATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTTGAAGTGGAGATGCCAGACTTCG
64260792 ATTTGCTCTCCGCCAATACAGAGATGCCGAATCATCTTAGATTTGCTTCATCGTAAACACGTGAA
131 ATTTGCTCTCCGCCAATACAGAGATGCC-AATCATCTTAGATTTGCTTCATCGTAAACACGTGAA
64260857 AGCCAAATCAG
195 AGCCAAATCAG
* *
64260868 CTATGTCTTCGATTTATTCCTTATAAACACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTC
1 CTATGTCTTCGATTTGTTCCTTATAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTC
*
64260933 TAATCATTTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTTGAAGTGGAGATGCCAGACTTCG
66 TAATCATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTTGAAGTGGAGATGCCAGACTTCG
* *
64260998 ATTTGCTCTCCGCCAATACAGAAATGCCAAACCATCTTAGATTTGCTTCATCGTAAACACGTGAA
131 ATTTGCTCTCCGCCAATACAGAGATGCC-AATCATCTTAGATTTGCTTCATCGTAAACACGTGAA
*
64261063 AGCCAAATTAG
195 AGCCAAATCAG
*
64261074 CTATGTCTTCGATTTGTTCCTTATAAGCACAAGGATGCCAAATCATCTTGGATCTTACTTCAGTC
1 CTATGTCTTCGATTTGTTCCTTATAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTC
* * * * * * *
64261139 TAATCACCTGAACGTCAGATCTGCTATGTATCTACTCTCCATTGAAGTGGAGATGCCAGACTTCG
66 TAATCATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTTGAAGTGGAGATGCCAGACTTCG
* **** * *** *
64261204 ATTTGTTCTTTAACAATACAAAGACAACAATCATCTTAGATTTTACTTCATCGTAAACACGTGAA
131 ATTTGCTCTCCGCCAATACAGAGATGCCAATCATCTTAGA-TTTGCTTCATCGTAAACACGTGAA
64261269 AGCCAAATCAG
195 AGCCAAATCAG
*
64261280 CTATATCTTCGAT
1 CTATGTCTTCGAT
64261293 CTACTCCTCG
Statistics
Matches: 387, Mismatches: 37, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
205 11 0.03
206 376 0.97
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.31
Consensus pattern (205 bp):
CTATGTCTTCGATTTGTTCCTTATAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTC
TAATCATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTTGAAGTGGAGATGCCAGACTTCG
ATTTGCTCTCCGCCAATACAGAGATGCCAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAA
GCCAAATCAG
Found at i:64269235 original size:15 final size:15
Alignment explanation
Indices: 64269193--64269242 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
64269183 ATAACTTTAA
*
64269193 ATGCAAATG-ATGTG
1 ATGCAAATGCATGAG
64269207 ATG-AAATGCTATGAG
1 ATGCAAATGC-ATGAG
64269222 ATGCAAATGCATGA-
1 ATGCAAATGCATGAG
64269236 ATGCAAA
1 ATGCAAA
64269243 AAGGATATCG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 11 0.34
16 6 0.19
ACGTcount: A:0.42, C:0.10, G:0.24, T:0.24
Consensus pattern (15 bp):
ATGCAAATGCATGAG
Found at i:64274170 original size:12 final size:11
Alignment explanation
Indices: 64274155--64274204 Score: 59
Period size: 10 Copynumber: 4.6 Consensus size: 11
64274145 ATAATTTTTT
64274155 ATATATTATAAA
1 ATATATT-TAAA
*
64274167 ATATTTTTAAA
1 ATATATTTAAA
64274178 A-ATATTTAAA
1 ATATATTTAAA
*
64274188 ATA-ATTTAGA
1 ATATATTTAAA
64274198 ATATATT
1 ATATATT
64274205 ATATTAATAG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
10 18 0.55
11 9 0.27
12 6 0.18
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (11 bp):
ATATATTTAAA
Found at i:64274203 original size:21 final size:22
Alignment explanation
Indices: 64274155--64274207 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
64274145 ATAATTTTTT
*
64274155 ATATATTATAAAATATTTTTAA
1 ATATATTATAAAATATATTTAA
*
64274177 AAATATT-TAAAATA-ATTTAGA
1 ATATATTATAAAATATATTTA-A
64274198 ATATATTATA
1 ATATATTATA
64274208 TTAATAGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 4 0.15
21 14 0.54
22 8 0.31
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (22 bp):
ATATATTATAAAATATATTTAA
Found at i:64280499 original size:11 final size:11
Alignment explanation
Indices: 64280485--64280529 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
64280475 AGATAAATAT
64280485 TATTTTATTAA
1 TATTTTATTAA
*
64280496 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
64280509 TATTTTATTAT
1 TATTTTATTAA
64280520 TATTTTATTA
1 TATTTTATTA
64280530 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:64282424 original size:46 final size:46
Alignment explanation
Indices: 64282372--64282737 Score: 491
Period size: 46 Copynumber: 8.0 Consensus size: 46
64282362 GCTCTCTGAA
*
64282372 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
64282418 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
64282464 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * *
64282510 ATGAAATGTGTAAGACCATAGCTGAGAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * * * *
64282556 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
64282602 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * *
64282648 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGAAACATAAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * *
64282694 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
64282738 TTAAAGATAA
Statistics
Matches: 290, Mismatches: 29, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.00
46 289 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:64285113 original size:43 final size:43
Alignment explanation
Indices: 64284952--64285117 Score: 156
Period size: 43 Copynumber: 3.9 Consensus size: 43
64284942 AGCTTGTACA
* * * * * *
64284952 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCA-TATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATA-CG
* * * * *
64284994 ATGCCACTGTCCCAGACAGGGTCTTATACGAAATCATAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACG
* *
64285037 ATGCCAATGTCCCAGACATGGTTTTACACGTAATCACAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACG
* * * *
64285080 AAGCCAATTTCCCAGATATGGTCTTACATGTAATCACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
64285118 TCTCGATAAC
Statistics
Matches: 100, Mismatches: 22, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
42 5 0.05
43 92 0.92
44 3 0.03
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACG
Found at i:64285598 original size:28 final size:28
Alignment explanation
Indices: 64285560--64285618 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
64285550 GCTAGCCGAA
*
64285560 TTTTGTATAGCTTCATAGCAGGGCATAT
1 TTTTGTATAGCTTCATAGCAGCGCATAT
*
64285588 TTTTGTATAGCTTCATAGCAGCTCATAT
1 TTTTGTATAGCTTCATAGCAGCGCATAT
64285616 TTT
1 TTT
64285619 CATTTATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.44
Consensus pattern (28 bp):
TTTTGTATAGCTTCATAGCAGCGCATAT
Found at i:64292736 original size:43 final size:43
Alignment explanation
Indices: 64292680--64292833 Score: 154
Period size: 43 Copynumber: 3.6 Consensus size: 43
64292670 AGCTCGCACA
* * *
64292680 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCATATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCATATATCG
* * *
64292722 ATGCCACTGTCCCAGACAAGGTCTTACACT-AAATCATAATAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACA-TGTAATCAT-ATATCG
* * * *
64292765 ATGCCAATGTCCCAGACATGGTTTTACACGTAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCATATAT-CG
*
64292808 ATGCCAATGTCTCAGACATGGTCTTA
1 ATGCCAATGTCCCAGACATGGTCTTA
64292834 TGTGACAGCC
Statistics
Matches: 91, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
41 2 0.02
42 6 0.07
43 78 0.86
44 5 0.05
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCATATATCG
Found at i:64294172 original size:29 final size:29
Alignment explanation
Indices: 64294137--64294239 Score: 172
Period size: 29 Copynumber: 3.6 Consensus size: 29
64294127 GTTGTGAGAT
64294137 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
64294166 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* *
64294195 TGGCACTAAGTGTGCGAG-TTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
64294224 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
64294240 CGGTTGATTA
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
28 5 0.07
29 66 0.93
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:64296664 original size:20 final size:20
Alignment explanation
Indices: 64296639--64296685 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
64296629 AAGTGTTGAG
*
64296639 AATGTGTCCTTAACATGTGA
1 AATGTGTCATTAACATGTGA
64296659 AATGTGTCATTAACATGTGA
1 AATGTGTCATTAACATGTGA
64296679 AAT-TGTC
1 AATGTGTC
64296686 TTTTTCACGC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (20 bp):
AATGTGTCATTAACATGTGA
Found at i:64298877 original size:21 final size:21
Alignment explanation
Indices: 64298825--64298878 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
64298815 ATTAATTACG
*
64298825 TTAATTTTTAATAATATAAATGA
1 TTAATTTTT--TAATATAAATCA
* *
64298848 ATAAATTTTTAATATAAATCA
1 TTAATTTTTTAATATAAATCA
64298869 TTAATTTTTT
1 TTAATTTTTT
64298879 TTAATTTAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 19 0.73
23 7 0.27
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (21 bp):
TTAATTTTTTAATATAAATCA
Found at i:64305188 original size:115 final size:115
Alignment explanation
Indices: 64305055--64305344 Score: 424
Period size: 115 Copynumber: 2.5 Consensus size: 115
64305045 TTTTCAGGTT
* * * *
64305055 ATTTTCATTTTGGAGAAAATCATAGTCATTTCCAAATGATTCCATTTCTACATTTTCATTTTCAT
1 ATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTCCATTTCTCCATTTTCACTTTCAT
* * *
64305120 TTTGGAGAAAACCATAGTCATTTCTAAATGA-TT-CTATTTCTCCATTTTTC
66 TTTGAAGAAAACCATAATCATTTC-AAATGATTTCCCATTTCTCCA-TTTTC
* *
64305170 ATTTTCATTTTGGAGAAAACCATAATCATTTTCAAATGTTTCCATTTCTCCATTTTCACTTTCAT
1 ATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTCCATTTCTCCATTTTCACTTTCAT
64305235 TTTGAAGAAAACCATAATCATTTCAAATGATTTCCCATTTCTCCATTTTC
66 TTTGAAGAAAACCATAATCATTTCAAATGATTTCCCATTTCTCCATTTTC
* *
64305285 ATTTTTATTTTGAAGAAAACCATAATCA-TTCCAAATGATTTTCCATTTCTCCATTTTCAC
1 ATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGA--TTCCATTTCTCCATTTTCAC
64305345 CATTTTTATT
Statistics
Matches: 158, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
114 14 0.09
115 114 0.72
116 30 0.19
ACGTcount: A:0.30, C:0.19, G:0.07, T:0.44
Consensus pattern (115 bp):
ATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTCCATTTCTCCATTTTCACTTTCAT
TTTGAAGAAAACCATAATCATTTCAAATGATTTCCCATTTCTCCATTTTC
Found at i:64305199 original size:58 final size:57
Alignment explanation
Indices: 64305055--64305343 Score: 411
Period size: 58 Copynumber: 5.0 Consensus size: 57
64305045 TTTTCAGGTT
* * *
64305055 ATTTTCATTTTGGAGAAAATCATAGTCATTTCCAAATGATTCCATTTCTACATTTTC
1 ATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTCCATTTCTCCATTTTC
* * *
64305112 ATTTTCATTTTGGAGAAAACCATAGTCATTTCTAAATGATTCTATTTCTCCATTTTTC
1 ATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTCCATTTCTCCA-TTTTC
* *
64305170 ATTTTCATTTTGGAGAAAACCATAATCATTTTCAAATGTTTCCATTTCTCCATTTTC
1 ATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTCCATTTCTCCATTTTC
* *
64305227 ACTTTCATTTTGAAGAAAACCATAATCATTT-CAAATGATTTCCCATTTCTCCATTTTC
1 ATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGA-TT-CCATTTCTCCATTTTC
* *
64305285 ATTTTTATTTTGAAGAAAACCATAATCA-TTCCAAATGATTTTCCATTTCTCCATTTTC
1 ATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGA--TTCCATTTCTCCATTTTC
64305343 A
1 A
64305344 CCATTTTTAT
Statistics
Matches: 213, Mismatches: 14, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
56 6 0.03
57 86 0.40
58 118 0.55
59 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.07, T:0.44
Consensus pattern (57 bp):
ATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTCCATTTCTCCATTTTC
Found at i:64307648 original size:24 final size:24
Alignment explanation
Indices: 64307563--64307649 Score: 77
Period size: 24 Copynumber: 3.6 Consensus size: 24
64307553 GAACGCTATA
* * *
64307563 AGTGGTTTGTCCATAATGTAAACG
1 AGTGGTTTGACCACAATGTAAATG
* * *
64307587 AGTGGTTAGACCACAA-CTATATTG
1 AGTGGTTTGACCACAATGTA-AATG
* * *
64307611 AGTTGCTTGGCCACAATGTAAATG
1 AGTGGTTTGACCACAATGTAAATG
64307635 AGTGGTTTGACCACA
1 AGTGGTTTGACCACA
64307650 CCATAGAACT
Statistics
Matches: 46, Mismatches: 15, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
23 2 0.04
24 42 0.91
25 2 0.04
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (24 bp):
AGTGGTTTGACCACAATGTAAATG
Found at i:64323680 original size:93 final size:92
Alignment explanation
Indices: 64323522--64323691 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 92
64323512 GGATGGTTGA
* *
64323522 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTT
64323587 GAGTCCGAGTTCGTGAAATGTAACTAG
66 GAGTCCGAGTTCGTGAAATGTAACTAG
** *
64323614 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
64323679 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
64323692 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 24 0.33
93 48 0.67
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:64323690 original size:46 final size:45
Alignment explanation
Indices: 64323526--64323696 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 45
64323516 GGTTGAGCAT
* * *
64323526 CCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-TAACGC
* * *
64323571 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAC---GC
64323616 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-AACGC
*
64323664 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
64323697 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 23 0.22
46 39 0.37
47 28 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAACGC
Found at i:64330972 original size:46 final size:45
Alignment explanation
Indices: 64330922--64331093 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
64330912 TGGTTGAGCA
64330922 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
64330968 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
64331014 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
64331060 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
64331094 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:64331076 original size:92 final size:92
Alignment explanation
Indices: 64330919--64331088 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
64330909 GGATGGTTGA
* *
64330919 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64330984 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
64331011 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64331076 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
64331089 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:64338288 original size:49 final size:49
Alignment explanation
Indices: 64338215--64338481 Score: 227
Period size: 49 Copynumber: 5.6 Consensus size: 49
64338205 TGATGTGTGT
* *
64338215 GCTAGTGTAAGTCCT-TCTGGGACATGACATCGGCACTGATAGATGAGA
1 GCTAGTGTAAGACCTATCTGGGACATGGCATCGGCACTGATAGATGAGA
* * * *
64338263 GCTAGTGTAAAACCTGTCTGGGACATGGCATCGAC-CTCA-AGAT-ATGCAA
1 GCTAGTGTAAGACCTATCTGGGACATGGCATCGGCACTGATAGATGA-G--A
* *
64338312 GCTAGTGTAAGACCTATCTGGGACATGGCATC-G-ACT--T-GAGGAGT
1 GCTAGTGTAAGACCTATCTGGGACATGGCATCGGCACTGATAGATGAGA
* * * * *
64338356 GTTAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAATGAGA
1 GCTAGTGTAAGACCTATCTGGGACATGGCATCGGCACTGATAGATGAGA
* **
64338405 G-TCAGTGTAAGACCTATCTGGGACATCGCATCGGCTTTGAT-GTATG-GAA
1 GCT-AGTGTAAGACCTATCTGGGACATGGCATCGGCACTGATAG-ATGAG-A
*
64338454 G-TCAGTGTAAGACCTATTTGGGACATGG
1 GCT-AGTGTAAGACCTATCTGGGACATGG
64338482 TGTGACAGCC
Statistics
Matches: 178, Mismatches: 26, Indels: 29
0.76 0.11 0.12
Matches are distributed among these distances:
44 30 0.17
46 6 0.03
47 6 0.03
48 21 0.12
49 115 0.65
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (49 bp):
GCTAGTGTAAGACCTATCTGGGACATGGCATCGGCACTGATAGATGAGA
Found at i:64338371 original size:93 final size:95
Alignment explanation
Indices: 64338215--64338437 Score: 262
Period size: 93 Copynumber: 2.3 Consensus size: 95
64338205 TGATGTGTGT
* * *
64338215 GCTAGTGTAAGTCCT-TCTGGGACATGACATCGGCACTGATAGATGAGAGCTAGTGTAAAACCTG
1 GCTAGTGTAAGACCTATCTGGGACATGGCATC-GCACT-ATAGAGGAGAGCTAGTGTAAAACCTG
*
64338279 TCTGGGACATGGCATCGACCTCAAGAT-ATGCA-A
64 TCTGGGACATGGCATCGA-CAC-AGATAATG-AGA
* * *
64338312 GCTAGTGTAAGACCTATCTGGGACATGGCATCG-ACT-T-GAGGAGTGTTAGTGTAAGACCTGTC
1 GCTAGTGTAAGACCTATCTGGGACATGGCATCGCACTATAGAGGAGAGCTAGTGTAAAACCTGTC
64338374 TGGGACATGGCATCGACACAGATAAATGAGA
66 TGGGACATGGCATCGACACAGAT-AATGAGA
*
64338405 G-TCAGTGTAAGACCTATCTGGGACATCGCATCG
1 GCT-AGTGTAAGACCTATCTGGGACATGGCATCG
64338438 GCTTTGATGT
Statistics
Matches: 113, Mismatches: 8, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
91 4 0.04
92 4 0.04
93 71 0.63
94 1 0.01
96 3 0.03
97 15 0.13
98 15 0.13
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (95 bp):
GCTAGTGTAAGACCTATCTGGGACATGGCATCGCACTATAGAGGAGAGCTAGTGTAAAACCTGTC
TGGGACATGGCATCGACACAGATAATGAGA
Found at i:64340268 original size:40 final size:40
Alignment explanation
Indices: 64340213--64340400 Score: 270
Period size: 40 Copynumber: 4.7 Consensus size: 40
64340203 TGAATGATAC
* * *
64340213 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
64340253 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
64340293 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
64340333 CCGGGCTAAGACCCGAAGGCATTAGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
64340373 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
64340401 TTGTGGTTAT
Statistics
Matches: 134, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 132 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:64340410 original size:80 final size:80
Alignment explanation
Indices: 64340209--64340420 Score: 318
Period size: 80 Copynumber: 2.7 Consensus size: 80
64340199 CATTTGAATG
* * * *
64340209 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
*
64340274 TTTGTGCGAGTTGCT
66 TTAGTGCGAGTTGCT
* * *
64340289 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
64340354 TTAGTGCGAGTTGCT
66 TTAGTGCGAGTTGCT
* * *
64340369 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATA-CCCGGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAA
64340421 ATTCCGAAGA
Statistics
Matches: 118, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
79 8 0.07
80 110 0.93
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
TTAGTGCGAGTTGCT
Found at i:64340412 original size:40 final size:40
Alignment explanation
Indices: 64340209--64340420 Score: 266
Period size: 40 Copynumber: 5.3 Consensus size: 40
64340199 CATTTGAATG
* * *
64340209 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATT
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
* *
64340249 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* *
64340289 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * *
64340329 ATATCCGGGCTAAGACCCGAAGGCATTAGTGCGAGTTGCT
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * ** *
64340369 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
64340409 ATACCC-GGCTAA
1 ATACCCGGGCTAA
64340421 ATTCCGAAGA
Statistics
Matches: 152, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 5 0.03
40 145 0.95
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:64347340 original size:63 final size:63
Alignment explanation
Indices: 64347212--64347372 Score: 164
Period size: 63 Copynumber: 2.6 Consensus size: 63
64347202 TTGACCATAG
* * * *
64347212 CTTGTTTGTGATATTCAA-TGGCTTGACCATAATGTTATTAAGTGGCTTGACCACAATGTGCAA
1 CTTGTCTGCGATATT-AAGTGGCTTGACCATAACGTTATTAAGTGGCTTGACCACAATGAGCAA
* * * * * *
64347275 CTTGTCTGCGATATTAAGTGGCTTGACCACAACGTTATTCAGTGGTTTGACTATAATGAGTAA
1 CTTGTCTGCGATATTAAGTGGCTTGACCATAACGTTATTAAGTGGCTTGACCACAATGAGCAA
* * * *
64347338 CTTCTCCGCAATA-TACAGTGGTTTGACCATAACGT
1 CTTGTCTGCGATATTA-AGTGGCTTGACCATAACGT
64347373 GGAGTGTTAT
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
62 4 0.05
63 77 0.95
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (63 bp):
CTTGTCTGCGATATTAAGTGGCTTGACCATAACGTTATTAAGTGGCTTGACCACAATGAGCAA
Found at i:64350276 original size:34 final size:35
Alignment explanation
Indices: 64350212--64350278 Score: 91
Period size: 36 Copynumber: 1.9 Consensus size: 35
64350202 TGATCTATGG
* * *
64350212 ATTTGCATGTTGAGCATGCCCTATTCTGAAAATCTA
1 ATTTGCATGATAAGCATG-CCTATTATGAAAATCTA
64350248 ATTTGCATGATAAGCATG-CTATTATGAAAAT
1 ATTTGCATGATAAGCATGCCTATTATGAAAAT
64350279 ATATATGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 12 0.43
36 16 0.57
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (35 bp):
ATTTGCATGATAAGCATGCCTATTATGAAAATCTA
Found at i:64350287 original size:12 final size:12
Alignment explanation
Indices: 64350270--64350295 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
64350260 AGCATGCTAT
64350270 TATGAAAATATA
1 TATGAAAATATA
64350282 TATGAAAATATA
1 TATGAAAATATA
64350294 TA
1 TA
64350296 AGATTTGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (12 bp):
TATGAAAATATA
Found at i:64352831 original size:14 final size:14
Alignment explanation
Indices: 64352812--64352841 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
64352802 TTCTGAGTGG
*
64352812 TTAAGAGATTATAT
1 TTAAGACATTATAT
64352826 TTAAGACATTATAT
1 TTAAGACATTATAT
64352840 TT
1 TT
64352842 GACTAAGTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.47
Consensus pattern (14 bp):
TTAAGACATTATAT
Found at i:64354617 original size:29 final size:29
Alignment explanation
Indices: 64354527--64354686 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
64354517 ACTCGATTTC
* * **
64354527 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
64354556 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
64354584 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
64354614 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
64354643 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
64354672 ACACACTTAGTGCCA
1 GCACACTTAGTGCCA
64354687 ATCTCGTCAC
Statistics
Matches: 110, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 107 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:64356007 original size:25 final size:24
Alignment explanation
Indices: 64355971--64356019 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
64355961 GCATCCACAC
*
64355971 TCTTTTTTTTTCATCATTTTCCTT
1 TCTTTTTATTTCATCATTTTCCTT
* *
64355995 TCTTTTTCATTTCTTTATTTTCCTT
1 TCTTTTT-ATTTCATCATTTTCCTT
64356020 CCATAATGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.71
Consensus pattern (24 bp):
TCTTTTTATTTCATCATTTTCCTT
Found at i:64357100 original size:13 final size:13
Alignment explanation
Indices: 64357082--64357115 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
64357072 AGCACATGGG
64357082 CGTGTGGCTTGGC
1 CGTGTGGCTTGGC
64357095 CGTGTGGCTTGGC
1 CGTGTGGCTTGGC
64357108 CGTGTGGC
1 CGTGTGGC
64357116 ACGAGTCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.47, T:0.29
Consensus pattern (13 bp):
CGTGTGGCTTGGC
Found at i:64357271 original size:20 final size:19
Alignment explanation
Indices: 64357230--64357274 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
64357220 TGACCCCTAC
64357230 AGTTT-TGAAAATTTTATA
1 AGTTTCTGAAAATTTTATA
* *
64357248 AGTTTCTGAAATATTTTTTG
1 AGTTTCTGAAA-ATTTTATA
64357268 AGTTTCT
1 AGTTTCT
64357275 AATTTAGTCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 5 0.22
19 5 0.22
20 13 0.57
ACGTcount: A:0.29, C:0.04, G:0.13, T:0.53
Consensus pattern (19 bp):
AGTTTCTGAAAATTTTATA
Found at i:64364274 original size:18 final size:18
Alignment explanation
Indices: 64364244--64364293 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
64364234 TTTTTCAATT
*
64364244 TTCTTTTTC-TTCTCACA
1 TTCTTTTTCATTCTCAAA
64364261 TTCTTTTTCATTCTCAAA
1 TTCTTTTTCATTCTCAAA
*
64364279 CTCTTTTTCATTCTC
1 TTCTTTTTCATTCTC
64364294 TTTTTCAATC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 9 0.30
18 21 0.70
ACGTcount: A:0.14, C:0.28, G:0.00, T:0.58
Consensus pattern (18 bp):
TTCTTTTTCATTCTCAAA
Found at i:64364296 original size:30 final size:30
Alignment explanation
Indices: 64364262--64364328 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
64364252 CTTCTCACAT
*
64364262 TCTTTTTCATTCTCAAACTCTTTTTCATTC
1 TCTTTTTCAATCTCAAACTCTTTTTCATTC
*** *
64364292 TCTTTTTCAATCTCATTTTCTTTTTCATTT
1 TCTTTTTCAATCTCAAACTCTTTTTCATTC
64364322 TCTTTTT
1 TCTTTTT
64364329 GTTTTTCAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.13, C:0.22, G:0.00, T:0.64
Consensus pattern (30 bp):
TCTTTTTCAATCTCAAACTCTTTTTCATTC
Found at i:64364328 original size:18 final size:18
Alignment explanation
Indices: 64364286--64364337 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
64364276 AAACTCTTTT
*
64364286 TCATTCTCTTTTTCAATC
1 TCATTTTCTTTTTCAATC
* *
64364304 TCATTTTCTTTTTCATTT
1 TCATTTTCTTTTTCAATC
* *
64364322 TCTTTTTGTTTTTCAA
1 TCATTTTCTTTTTCAA
64364338 AGGCTTTTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.13, C:0.19, G:0.02, T:0.65
Consensus pattern (18 bp):
TCATTTTCTTTTTCAATC
Found at i:64364335 original size:12 final size:12
Alignment explanation
Indices: 64364304--64364328 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64364294 TTTTTCAATC
64364304 TCATTTTCTTTT
1 TCATTTTCTTTT
64364316 TCATTTTCTTTT
1 TCATTTTCTTTT
64364328 T
1 T
64364329 GTTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:64364436 original size:17 final size:15
Alignment explanation
Indices: 64364397--64364456 Score: 52
Period size: 16 Copynumber: 3.9 Consensus size: 15
64364387 CTTTTGCGTC
*
64364397 TCTTTTCTTTTTATT
1 TCTTTTCTTTTTTTT
* *
64364412 TC-ATT-TTTTTTGT
1 TCTTTTCTTTTTTTT
64364425 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTT-TTT
64364442 TCTTTTCTTTGTTTT
1 TCTTTTCTTT-TTTT
64364457 CTCATTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 9
0.71 0.10 0.18
Matches are distributed among these distances:
13 8 0.23
14 4 0.11
15 2 0.06
16 11 0.31
17 10 0.29
ACGTcount: A:0.03, C:0.13, G:0.05, T:0.78
Consensus pattern (15 bp):
TCTTTTCTTTTTTTT
Found at i:64364447 original size:29 final size:28
Alignment explanation
Indices: 64364397--64364454 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
64364387 CTTTTGCGTC
*
64364397 TCTTTTCTTTTTATTTCATTTTTTTTGT
1 TCTTTTCTTTTTATTTCATTTTCTTTGT
*
64364425 TCTTTTGCTTTTTCTTTTC-TTTTCTTTGT
1 TCTTTT-CTTTTT-ATTTCATTTTCTTTGT
64364454 T
1 T
64364455 TTCTCATTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 6 0.23
29 16 0.62
30 4 0.15
ACGTcount: A:0.03, C:0.14, G:0.05, T:0.78
Consensus pattern (28 bp):
TCTTTTCTTTTTATTTCATTTTCTTTGT
Found at i:64367654 original size:40 final size:40
Alignment explanation
Indices: 64367572--64367793 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
64367562 AACCCAAGTA
* * * *
64367572 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * *
64367611 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
64367651 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
64367691 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
64367731 CCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
64367771 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
64367794 CATTCGAATA
Statistics
Matches: 166, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 12 0.07
40 151 0.91
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:64370550 original size:21 final size:20
Alignment explanation
Indices: 64370521--64370563 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
64370511 GAATGAGCTG
64370521 AAACAAGCTAAATTCGAACTC
1 AAACAAGCTAAATT-GAACTC
* * *
64370542 AAACGAGCTGAATTGAGCTC
1 AAACAAGCTAAATTGAACTC
64370562 AA
1 AA
64370564 GTGAACTGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.19
Consensus pattern (20 bp):
AAACAAGCTAAATTGAACTC
Found at i:64372301 original size:25 final size:25
Alignment explanation
Indices: 64372248--64372345 Score: 90
Period size: 25 Copynumber: 3.9 Consensus size: 25
64372238 GTTACCGATT
* * *
64372248 TCAGCTCGTATGAGCTTGCCGA-TAC
1 TCAGCTCGAAGGAGCTTACC-ATTAC
* * *
64372273 TCAGCTCGCATGAGCTTACCATTAT
1 TCAGCTCGAAGGAGCTTACCATTAC
* *
64372298 TCAGTTTGAAGGAGCTTACCATTAC
1 TCAGCTCGAAGGAGCTTACCATTAC
* *
64372323 TCAGCTCGGAGGAGCTTATCATT
1 TCAGCTCGAAGGAGCTTACCATT
64372346 TGTAGCTCAT
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
24 1 0.02
25 59 0.98
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.31
Consensus pattern (25 bp):
TCAGCTCGAAGGAGCTTACCATTAC
Found at i:64372301 original size:50 final size:50
Alignment explanation
Indices: 64372247--64372345 Score: 110
Period size: 50 Copynumber: 2.0 Consensus size: 50
64372237 GGTTACCGAT
* * * *
64372247 TTCAGCTCGTATGAGCTTGCCGA-TACTCAGCTCGCATGAGCTTACCATTA
1 TTCAGCTCGAAGGAGCTTACC-ATTACTCAGCTCGCAGGAGCTTACCATTA
* * * *
64372297 TTCAGTTTGAAGGAGCTTACCATTACTCAGCTCGGAGGAGCTTATCATT
1 TTCAGCTCGAAGGAGCTTACCATTACTCAGCTCGCAGGAGCTTACCATT
64372346 TGTAGCTCAT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
49 1 0.03
50 39 0.98
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.31
Consensus pattern (50 bp):
TTCAGCTCGAAGGAGCTTACCATTACTCAGCTCGCAGGAGCTTACCATTA
Found at i:64377314 original size:13 final size:13
Alignment explanation
Indices: 64377301--64377350 Score: 73
Period size: 13 Copynumber: 3.8 Consensus size: 13
64377291 AAACAGAATT
*
64377301 AGATATACAGATT
1 AGATATACAGATC
*
64377314 AAATATACAGATC
1 AGATATACAGATC
64377327 AGATATACAGATC
1 AGATATACAGATC
*
64377340 AGACATACAGA
1 AGATATACAGA
64377351 ATCCTACCCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.50, C:0.14, G:0.14, T:0.22
Consensus pattern (13 bp):
AGATATACAGATC
Found at i:64384027 original size:30 final size:30
Alignment explanation
Indices: 64383993--64384053 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
64383983 TCTTTAATAC
*
64383993 AAACTTTGGAAAAATTACATTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* *
64384023 AAACTTTTGAATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
64384053 A
1 A
64384054 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:64388204 original size:15 final size:15
Alignment explanation
Indices: 64388184--64388215 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
64388174 AGAACACTTA
64388184 ACCACTGAAGCAGAT
1 ACCACTGAAGCAGAT
64388199 ACCACTGAAGCAGAT
1 ACCACTGAAGCAGAT
64388214 AC
1 AC
64388216 ATATTTGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.28, G:0.19, T:0.12
Consensus pattern (15 bp):
ACCACTGAAGCAGAT
Found at i:64388692 original size:2 final size:2
Alignment explanation
Indices: 64388685--64388712 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
64388675 CTTTGAATTG
64388685 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64388713 GTTTGTGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64396891 original size:2 final size:2
Alignment explanation
Indices: 64396884--64396915 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
64396874 TTAACATGAA
*
64396884 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64396916 GCTGAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64401134 original size:39 final size:39
Alignment explanation
Indices: 64401087--64401269 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
64401077 AATGTTCGAG
64401087 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
64401126 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
64401165 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
64401204 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
64401244 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
64401270 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:64408425 original size:64 final size:68
Alignment explanation
Indices: 64408357--64408540 Score: 254
Period size: 71 Copynumber: 2.7 Consensus size: 68
64408347 TAGTACCACT
*
64408357 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTC-TGTCTACATGGTGTCC-TCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
64408417 CACG
65 CACG
64408421 CATGCGACC-AGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
64408485 ATCACG
63 ATCACG
64408491 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
64408541 GATACATCTC
Statistics
Matches: 110, Mismatches: 1, Indels: 11
0.90 0.01 0.09
Matches are distributed among these distances:
63 3 0.03
64 15 0.14
65 1 0.01
66 1 0.01
68 10 0.09
69 16 0.15
70 24 0.22
71 40 0.36
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:64408472 original size:69 final size:71
Alignment explanation
Indices: 64408380--64408540 Score: 301
Period size: 71 Copynumber: 2.3 Consensus size: 71
64408370 CGATTTGTCT
64408380 CGTAGCTCTC-TGTCTACATGGTGTCC-TCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64408442 CTTTCA
66 CTTTCA
64408448 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64408513 CTTTCA
66 CTTTCA
64408519 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
64408541 GATACATCTC
Statistics
Matches: 90, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
68 10 0.11
69 16 0.18
70 24 0.27
71 40 0.44
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:64408578 original size:71 final size:70
Alignment explanation
Indices: 64408380--64408574 Score: 240
Period size: 71 Copynumber: 2.8 Consensus size: 70
64408370 CGATTTGTCT
* * *
64408380 CGTAGCTCTC-TGTCTACATGGTGT-CCTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
64408442 CTTTCA
65 CTTTCA
* * * *
64408448 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
64408513 CTTTCA
65 CTTTCA
* *
64408519 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
64408575 TACAGGGTGT
Statistics
Matches: 116, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
68 32 0.28
69 15 0.13
70 26 0.22
71 43 0.37
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:64418315 original size:39 final size:39
Alignment explanation
Indices: 64418261--64418404 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
64418251 GAATGTTCGA
64418261 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
64418300 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
64418339 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
64418378 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
64418405 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:64418351 original size:78 final size:79
Alignment explanation
Indices: 64418262--64418444 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
64418252 AATGTTCGAG
64418262 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
64418326 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
64418340 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
64418405 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
64418419 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
64418445 GTTTGAACGA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:64421180 original size:40 final size:40
Alignment explanation
Indices: 64421125--64421226 Score: 152
Period size: 40 Copynumber: 2.5 Consensus size: 40
64421115 AATGATACCT
* *
64421125 GGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCC
1 GGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATATCC
**
64421165 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCC
1 GGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATATCC
64421205 GGGCTAAGACCCGAAGGCATTT
1 GGGCTAAGACCCGAAGGCATTT
64421227 GTGCAAGCTA
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 54 0.96
41 2 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATATCC
Found at i:64421262 original size:80 final size:80
Alignment explanation
Indices: 64421125--64421290 Score: 185
Period size: 80 Copynumber: 2.1 Consensus size: 80
64421115 AATGATACCT
* * ** * *
64421125 GGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTCGT
1 GGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCAAAGGCAATT-GT
*
64421189 GCGAGTTGTTATATCC
65 GCGAGTGGTTATATCC
* * *
64421205 GGGCTAAGACCCGAAGGCATTTGTGCAAGCT-ACCAAATCTGGGTTAAGACCCAAAGGCAATTGT
1 GGGCTAAGACCCGAAGGCATTTATGCAAG-TGACCAAATCCGGGCTAAGACCCAAAGGCAATTGT
**
64421269 GCTTGTGGTTATATCC
65 GCGAGTGGTTATATCC
64421285 -GGCTAA
1 GGGCTAA
64421291 ATTCCGAAGA
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
79 6 0.08
80 62 0.86
81 4 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
GGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCAAAGGCAATTGTG
CGAGTGGTTATATCC
Found at i:64422686 original size:41 final size:41
Alignment explanation
Indices: 64422629--64422710 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
64422619 TGTGCACCTT
64422629 GTGTTCGACTCCGGTAACGGACTCGGGTACGGGGTGTTACA
1 GTGTTCGACTCCGGTAACGGACTCGGGTACGGGGTGTTACA
*
64422670 GTGTTCGACTCTGGTAACGGACTCGGGTACGGGGTGTTACA
1 GTGTTCGACTCCGGTAACGGACTCGGGTACGGGGTGTTACA
64422711 TATATCCTCG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.17, C:0.21, G:0.37, T:0.26
Consensus pattern (41 bp):
GTGTTCGACTCCGGTAACGGACTCGGGTACGGGGTGTTACA
Found at i:64425003 original size:54 final size:54
Alignment explanation
Indices: 64424944--64425055 Score: 215
Period size: 54 Copynumber: 2.1 Consensus size: 54
64424934 TGTCCCGATG
*
64424944 ATGTTCTCGCAAACATTGTTCTCAATATGCATGACATCAAGATTGTGTTGTAAA
1 ATGTTCTCGCAAACATTGTTCTCAATATGCATGACATCAAGATTGTGTCGTAAA
64424998 ATGTTCTCGCAAACATTGTTCTCAATATGCATGACATCAAGATTGTGTCGTAAA
1 ATGTTCTCGCAAACATTGTTCTCAATATGCATGACATCAAGATTGTGTCGTAAA
64425052 ATGT
1 ATGT
64425056 GATGCTCCCA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (54 bp):
ATGTTCTCGCAAACATTGTTCTCAATATGCATGACATCAAGATTGTGTCGTAAA
Found at i:64425042 original size:27 final size:27
Alignment explanation
Indices: 64424958--64425043 Score: 65
Period size: 27 Copynumber: 3.2 Consensus size: 27
64424948 TCTCGCAAAC
64424958 ATTGTTCTCAATATGCATGACATCAAG
1 ATTGTTCTCAATATGCATGACATCAAG
* * *
64424985 ATTGTGT-TGTAAAATGTTC-TCG-CA--AAC
1 ATTGT-TCT-CAATATG--CAT-GACATCAAG
64425012 ATTGTTCTCAATATGCATGACATCAAG
1 ATTGTTCTCAATATGCATGACATCAAG
64425039 ATTGT
1 ATTGT
64425044 GTCGTAAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 20
0.62 0.09 0.29
Matches are distributed among these distances:
24 2 0.05
25 3 0.07
26 6 0.14
27 21 0.49
28 6 0.14
29 3 0.07
30 2 0.05
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (27 bp):
ATTGTTCTCAATATGCATGACATCAAG
Found at i:64426448 original size:110 final size:108
Alignment explanation
Indices: 64426321--64426809 Score: 644
Period size: 110 Copynumber: 4.5 Consensus size: 108
64426311 TTAAATTAAA
* ** * *
64426321 TTAAAATAAAATATTTAAAATAAAACTTTAAATACAATT-TAATTTAACAATAAAACAAAAATAA
1 TTAAAATAAAA-CTTT-AAATAAAA-TTT-AATTTAATTGTAATTTAACAATAAAATAAAAGTAA
64426385 ACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAATAAAATAT
62 ACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAATAAAATAT
*
64426432 TTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAAC
1 TTAAAATAAAACTTTAAATAAAATTTAATTTAATT--GTAATTTAACAATAAAATAAAAGTAAAC
64426497 AAAATATTTTTCGTGATTAAA-T----TAAAATAAAATAAAATAT
64 AAAATATTTTTCGTGATTAAATTAAAATAAAATAAAATAAAATAT
*
64426537 TTAAAATAAAACTTTAAATAATATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAAC
1 TTAAAATAAAACTTTAAATAAAATTTAATTTAATT--GTAATTTAACAATAAAATAAAAGTAAAC
64426602 AAAATATTTTTC--G-TT--ATTAAAATAAAATAAAAT-AAATAT
64 AAAATATTTTTCGTGATTAAATTAAAATAAAATAAAATAAAATAT
* * *
64426641 TTAAAATAAAACTTTAAATATAATTTAATTTAATTAGGTGATTTAAAAATAAAATAAAAGTAGAA
1 TTAAAATAAAACTTTAAATAAAATTTAATTTAATT--GTAATTTAACAATAAAATAAAAGTA-AA
*
64426706 -AAAATATTTTTCGTGATTAAATTAAAATAAAATAAAATAACATAT
63 CAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAATAAAATAT
* * *
64426751 TCAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAA
1 TTAAAATAAAACTTTAAATAAAATTTAATTTAATT--GTAATTTAACAATAAAATAAAA
64426810 TATTTAAAAT
Statistics
Matches: 347, Mismatches: 16, Indels: 31
0.88 0.04 0.08
Matches are distributed among these distances:
100 1 0.00
101 1 0.00
102 2 0.01
103 1 0.00
104 76 0.22
105 106 0.31
106 1 0.00
107 9 0.03
108 3 0.01
109 26 0.07
110 110 0.32
111 11 0.03
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (108 bp):
TTAAAATAAAACTTTAAATAAAATTTAATTTAATTGTAATTTAACAATAAAATAAAAGTAAACAA
AATATTTTTCGTGATTAAATTAAAATAAAATAAAATAAAATAT
Found at i:64426588 original size:105 final size:105
Alignment explanation
Indices: 64426360--64426809 Score: 699
Period size: 105 Copynumber: 4.2 Consensus size: 105
64426350 AAATACAATT
* *
64426360 TAATTTAACAATAAAACAAAAATAAACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAAT
1 TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTAAA-T----TAAAATAAAAT
64426425 AAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
61 AAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
64426470 TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAAT
1 TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAAT
64426535 ATTTAAAATAAAACTTTAAATA-ATATTTAATTTAATTAGG
66 ATTTAAAATAAAACTTTAAATACA-ATTTAATTTAATTAGG
* *
64426575 TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTTATTAAAATAAAATAAAAT-AAAT
1 TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAAT
*
64426639 ATTTAAAATAAAACTTTAAATATAATTTAATTTAATTAGG
66 ATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
* *
64426679 TGATTTAAAAATAAAATAAAAGTAGAA-AAAATATTTTTCGTGATTAAATTAAAATAAAATAAAA
1 TAATTTAACAATAAAATAAAAGTA-AACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAA
64426743 TAACATATTCAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
65 T---AT-TT-AAAATAAAACTTTAAATACAATTTAATTTAATTAGG
*
64426789 TAATTTAAAAATAAAATAAAA
1 TAATTTAACAATAAAATAAAA
64426810 TATTTAAAAT
Statistics
Matches: 321, Mismatches: 10, Indels: 18
0.92 0.03 0.05
Matches are distributed among these distances:
104 96 0.30
105 119 0.37
108 2 0.01
109 3 0.01
110 101 0.31
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (105 bp):
TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAAT
ATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
Found at i:64426647 original size:13 final size:12
Alignment explanation
Indices: 64426618--64426668 Score: 54
Period size: 13 Copynumber: 4.3 Consensus size: 12
64426608 TTTTTCGTTA
64426618 TTAAAATAAAA-
1 TTAAAATAAAAT
64426629 -TAAAATAAATAT
1 TTAAAATAAA-AT
64426641 TTAAAATAAAACT
1 TTAAAATAAAA-T
*
64426654 TT-AAATATAAT
1 TTAAAATAAAAT
64426665 TTAA
1 TTAA
64426669 TTTAATTAGG
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
10 9 0.26
11 4 0.12
12 9 0.26
13 12 0.35
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (12 bp):
TTAAAATAAAAT
Found at i:64426701 original size:209 final size:216
Alignment explanation
Indices: 64426360--64426809 Score: 729
Period size: 209 Copynumber: 2.1 Consensus size: 216
64426350 AAATACAATT
*
64426360 TAATTTAACAATAAAACAAAAATAAACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAAT
1 TAATTTAACAATAAAATAAAAATAAACAAAATATTTTTCG-GATT-AATTAAAATAAAATAAAAT
*
64426425 AAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAA
64 AAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAA
64426490 AGTA-AACAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAAT-AT-TT-AAAATAAAACTT
129 AGTAGAA-AAAATATTTTTCGTGATTAAATTAAAATAAAATAAAATAATATTCAAAATAAAACTT
64426551 TAAATA-ATATTTAATTTAATTAGG
193 TAAATACA-ATTTAATTTAATTAGG
*
64426575 TAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTC-G-TT-ATTAAAATAAAATAAAAT-A
1 TAATTTAACAATAAAATAAAAATAAACAAAATATTTTTCGGATTAATTAAAATAAAATAAAATAA
* *
64426636 AATATTTAAAATAAAACTTTAAATATAATTTAATTTAATTAGGTGATTTAAAAATAAAATAAAAG
66 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAG
64426701 TAGAAAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAATAACATATTCAAAATAAAACTTT
131 TAGAAAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAAT-A-ATATTCAAAATAAAACTTT
64426766 AAATACAATTTAATTTAATTAGG
194 AAATACAATTTAATTTAATTAGG
*
64426789 TAATTTAAAAATAAAATAAAA
1 TAATTTAACAATAAAATAAAA
64426810 TATTTAAAAT
Statistics
Matches: 222, Mismatches: 6, Indels: 15
0.91 0.02 0.06
Matches are distributed among these distances:
209 103 0.46
210 20 0.09
212 4 0.02
213 3 0.01
214 54 0.24
215 38 0.17
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (216 bp):
TAATTTAACAATAAAATAAAAATAAACAAAATATTTTTCGGATTAATTAAAATAAAATAAAATAA
AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAG
TAGAAAAAATATTTTTCGTGATTAAATTAAAATAAAATAAAATAATATTCAAAATAAAACTTTAA
ATACAATTTAATTTAATTAGG
Found at i:64429886 original size:15 final size:16
Alignment explanation
Indices: 64429854--64429886 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
64429844 TTAATGCCTT
64429854 AACCCCTAGACACCTA
1 AACCCCTAGACACCTA
*
64429870 AACCCCTA-ACCCCTA
1 AACCCCTAGACACCTA
64429885 AA
1 AA
64429887 TCAAAAGCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.39, C:0.45, G:0.03, T:0.12
Consensus pattern (16 bp):
AACCCCTAGACACCTA
Found at i:64429908 original size:7 final size:7
Alignment explanation
Indices: 64429896--64430052 Score: 57
Period size: 7 Copynumber: 21.9 Consensus size: 7
64429886 ATCAAAAGCA
64429896 CTAAACC
1 CTAAACC
64429903 CTAAACC
1 CTAAACC
* ***
64429910 TTGTCCC
1 CTAAACC
*
64429917 CAAAACCC
1 CTAAAC-C
64429925 CTAAACC
1 CTAAACC
*
64429932 ATAAACC
1 CTAAACC
64429939 TCTAAACC
1 -CTAAACC
* **
64429947 ATATCCC
1 CTAAACC
*
64429954 CAAAACCC
1 CTAAA-CC
64429962 CTAAACC
1 CTAAACC
*
64429969 ATAAACC
1 CTAAACC
64429976 CTTAAACC
1 C-TAAACC
*
64429984 CTTAACC
1 CTAAACC
* *
64429991 CT-TATC
1 CTAAACC
*
64429997 CTTAACTC
1 CTAAAC-C
* * *
64430005 TTGACCC
1 CTAAACC
64430012 CTAAACC
1 CTAAACC
*
64430019 ATAAACC
1 CTAAACC
64430026 CTAAA-C
1 CTAAACC
*
64430032 CTCAACC
1 CTAAACC
64430039 CTTAAACC
1 C-TAAACC
*
64430047 ATAAAC
1 CTAAAC
64430053 AATAATCCCT
Statistics
Matches: 104, Mismatches: 38, Indels: 16
0.66 0.24 0.10
Matches are distributed among these distances:
6 9 0.09
7 61 0.59
8 34 0.33
ACGTcount: A:0.39, C:0.39, G:0.01, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:64429943 original size:15 final size:15
Alignment explanation
Indices: 64429919--64429949 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
64429909 CTTGTCCCCA
64429919 AAACCCCTAAACCAT
1 AAACCCCTAAACCAT
*
64429934 AAACCTCTAAACCAT
1 AAACCCCTAAACCAT
64429949 A
1 A
64429950 TCCCCAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.35, G:0.00, T:0.16
Consensus pattern (15 bp):
AAACCCCTAAACCAT
Found at i:64429946 original size:37 final size:36
Alignment explanation
Indices: 64429897--64429983 Score: 138
Period size: 37 Copynumber: 2.4 Consensus size: 36
64429887 TCAAAAGCAC
* *
64429897 TAAACCCTAAACCTTGTCCCCAAAACCCCTAAACCA
1 TAAACCCTAAACCATATCCCCAAAACCCCTAAACCA
64429933 TAAACCTCTAAACCATATCCCCAAAACCCCTAAACCA
1 TAAACC-CTAAACCATATCCCCAAAACCCCTAAACCA
64429970 TAAACCCTTAAACC
1 TAAACCC-TAAACC
64429984 CTTAACCCTT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 7 0.15
37 40 0.85
ACGTcount: A:0.41, C:0.40, G:0.01, T:0.17
Consensus pattern (36 bp):
TAAACCCTAAACCATATCCCCAAAACCCCTAAACCA
Found at i:64429985 original size:22 final size:21
Alignment explanation
Indices: 64429933--64429990 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 21
64429923 CCCTAAACCA
*
64429933 TAAACCTCTAAACCATATCCCC
1 TAAACC-CTAAACCATAACCCC
* *
64429955 AAAACCCCTAAACCATAAACCCT
1 TAAA-CCCTAAACCAT-AACCCC
*
64429978 TAAACCCTTAACC
1 TAAACCCTAAACC
64429991 CTTATCCTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
22 20 0.69
23 9 0.31
ACGTcount: A:0.41, C:0.40, G:0.00, T:0.19
Consensus pattern (21 bp):
TAAACCCTAAACCATAACCCC
Found at i:64430123 original size:7 final size:7
Alignment explanation
Indices: 64430113--64430152 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
64430103 TCATAAACTA
64430113 TAAACCC
1 TAAACCC
64430120 TAAACCC
1 TAAACCC
*
64430127 TAAACCT
1 TAAACCC
64430134 TAAACCC
1 TAAACCC
*
64430141 ATAATCCC
1 -TAAACCC
64430149 TAAA
1 TAAA
64430153 TCCATAGTCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 22 0.79
8 6 0.21
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.20
Consensus pattern (7 bp):
TAAACCC
Found at i:64430130 original size:14 final size:15
Alignment explanation
Indices: 64430112--64430158 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
64430102 CTCATAAACT
64430112 ATAAACCCTAAACCC
1 ATAAACCCTAAACCC
*
64430127 -TAAACCTTAAACCC
1 ATAAACCCTAAACCC
* *
64430141 ATAATCCCTAAATCC
1 ATAAACCCTAAACCC
64430156 ATA
1 ATA
64430159 GTCCATAAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 13 0.48
15 14 0.52
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (15 bp):
ATAAACCCTAAACCC
Found at i:64430158 original size:15 final size:14
Alignment explanation
Indices: 64429923--64430052 Score: 66
Period size: 15 Copynumber: 9.1 Consensus size: 14
64429913 TCCCCAAAAC
64429923 CCCTAAACCATAAA
1 CCCTAAACCATAAA
**
64429937 CCTCTAAACCATATC
1 CC-CTAAACCATAAA
* *
64429952 CCCAAAACCCCTAAA
1 CCCTAAA-CCATAAA
* *
64429967 CCATAAACCCTTAAA
1 CCCTAAA-CCATAAA
* * *
64429982 CCCTTAACCCT-TA
1 CCCTAAACCATAAA
* * * * *
64429995 TCCTTAACTCTTGAC
1 CCCTAAAC-CATAAA
64430010 CCCTAAACCATAAA
1 CCCTAAACCATAAA
*
64430024 CCCTAAACC-TCAA
1 CCCTAAACCATAAA
64430037 CCCTTAAACCATAAA
1 CCC-TAAACCATAAA
64430052 C
1 C
64430053 AATAATCCCT
Statistics
Matches: 86, Mismatches: 24, Indels: 11
0.71 0.20 0.09
Matches are distributed among these distances:
13 14 0.16
14 29 0.34
15 43 0.50
ACGTcount: A:0.39, C:0.39, G:0.01, T:0.21
Consensus pattern (14 bp):
CCCTAAACCATAAA
Found at i:64432538 original size:71 final size:71
Alignment explanation
Indices: 64432454--64432617 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64432444 CGATTTGTCT
64432454 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64432519 CTTTCA
66 CTTTCA
64432525 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64432590 CTTTCA
66 CTTTCA
64432596 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
64432618 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:64432655 original size:71 final size:70
Alignment explanation
Indices: 64432454--64432651 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
64432444 CGATTTGTCT
* * * *
64432454 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
64432519 CTTTCA
65 CTTTCA
* * * *
64432525 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
64432590 CTTTCA
65 CTTTCA
* *
64432596 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
64432652 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:64439612 original size:71 final size:71
Alignment explanation
Indices: 64439528--64439691 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
64439518 CGATTTGTCT
64439528 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
64439593 CTTTCA
66 CTTTCA
* *
64439599 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
64439664 CTTTCA
66 CTTTCA
64439670 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
64439692 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:64439729 original size:71 final size:70
Alignment explanation
Indices: 64439528--64439725 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
64439518 CGATTTGTCT
* * * * *
64439528 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
64439593 CTTTCA
65 CTTTCA
* * * *
64439599 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
64439664 CTTTCA
65 CTTTCA
* *
64439670 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
64439726 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:64441986 original size:39 final size:39
Alignment explanation
Indices: 64441939--64442121 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
64441929 AATGTTCGAG
64441939 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
64441978 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
64442017 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
64442056 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
64442096 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
64442122 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:64444771 original size:2 final size:2
Alignment explanation
Indices: 64444764--64444793 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
64444754 CAACTAACTC
64444764 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64444794 TCACATATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64449492 original size:28 final size:28
Alignment explanation
Indices: 64449460--64449586 Score: 130
Period size: 28 Copynumber: 4.4 Consensus size: 28
64449450 ACATACATGC
*
64449460 ATATGGCCCA-CTTGGCCCAATCTCATTT
1 ATATGGCCCATC-AGGCCCAATCTCATTT
*
64449488 ATATGGCCCATCAGGCCCAATTTACATTT
1 ATATGGCCCATCAGGCCCAATCT-CATTT
* * * *
64449517 CATATGGTCCATCAGGCTCAAATCACCTTT
1 -ATATGGCCCATCAGGC-CCAATCTCATTT
* * *
64449547 ATATGGCCCATTAGGCCTAATATCATTT
1 ATATGGCCCATCAGGCCCAATCTCATTT
64449575 ATATGGCCCATC
1 ATATGGCCCATC
64449587 CGACTCAAAT
Statistics
Matches: 81, Mismatches: 14, Indels: 8
0.79 0.14 0.08
Matches are distributed among these distances:
28 38 0.47
29 20 0.25
30 19 0.23
31 4 0.05
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.31
Consensus pattern (28 bp):
ATATGGCCCATCAGGCCCAATCTCATTT
Found at i:64449597 original size:57 final size:59
Alignment explanation
Indices: 64449485--64449599 Score: 162
Period size: 59 Copynumber: 2.0 Consensus size: 59
64449475 CCCAATCTCA
* * *
64449485 TTTATATGGCCCATCAGGCCCAATTTACATTTCATATGGTCCATCAGGCTCAAATCACC
1 TTTATATGGCCCATCAGGCCCAATATACATTTCATATGGCCCATCAGACTCAAATCACC
* * *
64449544 TTTATATGGCCCATTAGGCCTAATAT-CATTT-ATATGGCCCATCCGACTCAAATCAC
1 TTTATATGGCCCATCAGGCCCAATATACATTTCATATGGCCCATCAGACTCAAATCAC
64449600 ATTATATTCA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
57 22 0.44
58 5 0.10
59 23 0.46
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (59 bp):
TTTATATGGCCCATCAGGCCCAATATACATTTCATATGGCCCATCAGACTCAAATCACC
Found at i:64455026 original size:40 final size:39
Alignment explanation
Indices: 64454945--64455111 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 39
64454935 AAATTGAATG
* * *
64454945 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTG--ATT
* * *
64454984 ATATCCGGGTTAAGACCTGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTGATT
* *
64455024 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AGTGATT
* *
64455064 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA-GTGATT
64455104 ATATCCGG
1 ATATCCGG
64455112 TTATATTCCG
Statistics
Matches: 105, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
39 17 0.16
40 84 0.80
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGATT
Found at i:64458760 original size:11 final size:11
Alignment explanation
Indices: 64458727--64458769 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
64458717 ATCTTCTTGG
64458727 TTTGG-TCCTT
1 TTTGGCTCCTT
64458737 TTT-G-TCCTT
1 TTTGGCTCCTT
*
64458746 TTTGGCTCGTT
1 TTTGGCTCCTT
64458757 TTTGGCTCCTT
1 TTTGGCTCCTT
64458768 TT
1 TT
64458770 GACTCTTGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
9 9 0.31
10 4 0.14
11 16 0.55
ACGTcount: A:0.00, C:0.21, G:0.19, T:0.60
Consensus pattern (11 bp):
TTTGGCTCCTT
Found at i:64468196 original size:42 final size:43
Alignment explanation
Indices: 64468140--64468233 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 43
64468130 TTGTTTTATG
* * *
64468140 TGTAAGACCGTGTCTGGGACA-TCAGCATCG-TATCTGATTTCA
1 TGTAAGACCCTGTCTAGGACAGT-AGCATCGATATCTGATTACA
* * *
64468182 TGTAAGACCCTGTCTAGGACAGTGGCATCGATGTTTGATTACA
1 TGTAAGACCCTGTCTAGGACAGTAGCATCGATATCTGATTACA
64468225 TGTAAGACC
1 TGTAAGACC
64468234 ACATTTCAGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 25 0.57
43 19 0.43
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (43 bp):
TGTAAGACCCTGTCTAGGACAGTAGCATCGATATCTGATTACA
Found at i:64469256 original size:56 final size:56
Alignment explanation
Indices: 64469188--64469295 Score: 155
Period size: 56 Copynumber: 1.9 Consensus size: 56
64469178 CTAAAATTAT
* * * *
64469188 AAGTCAGGCTCGAGCACGGCCGAA-GCACACAGGCGTGTCTTGTGGTCGTGTGGCCC
1 AAGTCAGGCTCGACCACAGCC-AAGGCACACAGGCGTGTCTTATGGCCGTGTGGCCC
*
64469244 AAGTCAGTCTCGACCACAGCCAAGGCACACAGGCGTGTCTTATGGCCGTGTG
1 AAGTCAGGCTCGACCACAGCCAAGGCACACAGGCGTGTCTTATGGCCGTGTG
64469296 AGCAAGTCAG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
55 2 0.04
56 44 0.96
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (56 bp):
AAGTCAGGCTCGACCACAGCCAAGGCACACAGGCGTGTCTTATGGCCGTGTGGCCC
Found at i:64482892 original size:40 final size:40
Alignment explanation
Indices: 64482848--64482994 Score: 206
Period size: 40 Copynumber: 3.7 Consensus size: 40
64482838 ATTTGATGTG
*
64482848 TGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
64482888 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
* * * *
64482928 TCTATCCGGGTTTAAAGACCCGCAAGCTTTGTGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
* * * *
64482968 GGAATCCGGG-TTAAAAACCCGTAGGCT
1 TGTATCCGGGTTTAAAGACCCGCAGGCT
64482995 CGTGTTAGAA
Statistics
Matches: 96, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 14 0.15
40 82 0.85
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
Found at i:64485448 original size:28 final size:28
Alignment explanation
Indices: 64485402--64485470 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
64485392 TTTAAAACCC
*
64485402 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
64485429 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
64485457 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
64485471 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:64486122 original size:27 final size:27
Alignment explanation
Indices: 64486092--64486153 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
64486082 GGGCAAAATG
64486092 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
64486119 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
64486146 GTAATTTT
1 GTAATTTT
64486154 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:64486225 original size:81 final size:81
Alignment explanation
Indices: 64486107--64486313 Score: 247
Period size: 81 Copynumber: 2.6 Consensus size: 81
64486097 TTTACCCCAC
* ** * *
64486107 AAGGGTATTTCAGTAATTTTACCCTA-CAGGGGTATTTTAGTAATTTT-TCAAACCATGGGTATT
1 AAGGGTATTTTAGTAATTTTA-CAAACCAGGGGTATTTTAGTAATTTTAT-AAACCAAGGCTATT
* *
64486170 TTGGTAATTTTATAAACA
64 TTAGTAATTTTACAAACA
* *
64486188 AAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGCTATTTT
1 AAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTATAAACCAAGGCTATTTT
*
64486253 AGTAATTTTACAAACC
66 AGTAATTTTACAAACA
* * * * *
64486269 AGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATT
1 AAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATT
64486314 CTGTAAATTG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 2 0.02
81 104 0.97
82 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (81 bp):
AAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTATAAACCAAGGCTATTTT
AGTAATTTTACAAACA
Found at i:64486320 original size:27 final size:27
Alignment explanation
Indices: 64486136--64486313 Score: 232
Period size: 27 Copynumber: 6.6 Consensus size: 27
64486126 TACCCTACAG
*
64486136 GGGTATTTTAGTAATTTT-TCAAACCAT
1 GGGTATTTTAGTAATTTTAT-AAACCAA
* *
64486163 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTATAAACCAA
* *
64486190 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTAGTAATTTTATAAACCAA
* *
64486217 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTATAAACCAA
* * *
64486244 GGCTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTAGTAATTTTATAAACCAA
* *
64486271 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTATAAACCAA
64486298 GGGTATTTTAGTAATT
1 GGGTATTTTAGTAATT
64486314 CTGTAAATTG
Statistics
Matches: 127, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
27 126 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTATAAACCAA
Found at i:64486329 original size:54 final size:54
Alignment explanation
Indices: 64486136--64486313 Score: 311
Period size: 54 Copynumber: 3.3 Consensus size: 54
64486126 TACCCTACAG
* * * *
64486136 GGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
64486190 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
*
64486244 GGCTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
64486298 GGGTATTTTAGTAATT
1 GGGTATTTTAGTAATT
64486314 CTGTAAATTG
Statistics
Matches: 118, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 118 1.00
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
Found at i:64489409 original size:27 final size:27
Alignment explanation
Indices: 64489379--64489440 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
64489369 TTTAAAACCC
64489379 TAGGGGTATATCGGTAATTTTGCTCTT
1 TAGGGGTATATCGGTAATTTTGCTCTT
*
64489406 TA-GGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGT-ATATCGGTAATTTTGCTCTT
64489433 TAGGGGTA
1 TAGGGGTA
64489441 ATTTCGTGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 4 0.12
27 24 0.75
28 4 0.12
ACGTcount: A:0.19, C:0.10, G:0.27, T:0.44
Consensus pattern (27 bp):
TAGGGGTATATCGGTAATTTTGCTCTT
Found at i:64490097 original size:27 final size:27
Alignment explanation
Indices: 64490067--64490128 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
64490057 GGGCAAAATG
64490067 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
64490094 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
64490121 GTAATTTT
1 GTAATTTT
64490129 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:64490200 original size:81 final size:81
Alignment explanation
Indices: 64490082--64490288 Score: 247
Period size: 81 Copynumber: 2.6 Consensus size: 81
64490072 TTTACCCCAC
* ** * * *
64490082 AAGGGTATTTCAGTAATTTTACCCTA-CAGGGGTATTTTAGTAATTTT-TCAAACCATGGGTATT
1 AAGGGTATTTTAGTAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTAT-AAACCAAGGCTATT
* *
64490145 TTGGTAATTTTATAAACA
64 TTAGTAATTTTACAAACA
*
64490163 AAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGCTATTTT
1 AAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGCTATTTT
*
64490228 AGTAATTTTACAAACC
66 AGTAATTTTACAAACA
* * * * *
64490244 AGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 AAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATT
64490289 CTGTAAATTG
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 2 0.02
81 105 0.97
82 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (81 bp):
AAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGCTATTTT
AGTAATTTTACAAACA
Found at i:64490295 original size:27 final size:27
Alignment explanation
Indices: 64490111--64490288 Score: 232
Period size: 27 Copynumber: 6.6 Consensus size: 27
64490101 TACCCTACAG
* *
64490111 GGGTATTTTAGTAATTTT-TCAAACCAT
1 GGGTATTTTGGTAATTTTAT-AAACCAA
*
64490138 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
64490165 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
64490192 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * *
64490219 GGCTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
64490246 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
64490273 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
64490289 CTGTAAATTG
Statistics
Matches: 128, Mismatches: 22, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
27 127 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:64490302 original size:27 final size:27
Alignment explanation
Indices: 64490272--64490342 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
64490262 TTATAAACCA
* *
64490272 AGGGTATTTTGGTAATTCTGTAAATTG
1 AGGGTAATTTGGTAATTCTGTAAATCG
***
64490299 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAATTTGGTAATTCTGTAAATCG
*
64490326 -GGAGTACTTTGGTAATT
1 AGG-GTAATTTGGTAATT
64490343 TTACAAGTCG
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTCTGTAAATCG
Found at i:64490304 original size:54 final size:54
Alignment explanation
Indices: 64490111--64490288 Score: 302
Period size: 54 Copynumber: 3.3 Consensus size: 54
64490101 TACCCTACAG
* * * *
64490111 GGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
64490165 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
*
64490219 GGCTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
*
64490273 GGGTATTTTGGTAATT
1 GGGTATTTTAGTAATT
64490289 CTGTAAATTG
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 117 1.00
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
Found at i:64497747 original size:40 final size:40
Alignment explanation
Indices: 64497681--64497867 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
64497671 ATTTGATGTG
* *
64497681 TGTATTCGGGCTTAAAGACCCGCAGGCTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
* *
64497721 TGTAGCCGGGTTTAAAGACTCGCAGGCTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
*
64497761 TGTATCCGGGTTTAAAGACCCGTAGGCTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
* * *
64497801 TCTATCCGGGTTTAAAGACCTGTAGGCT-TAGTGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATA-TGCTGGAAT
* * * *
64497841 GGAATCAGGG-TTAAAGACCCGTAGGCT
1 TGTATCCGGGTTTAAAGACCCGCAGGCT
64497868 CGTGTTAGAA
Statistics
Matches: 132, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 18 0.14
40 114 0.86
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (40 bp):
TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
Found at i:64503437 original size:21 final size:21
Alignment explanation
Indices: 64503412--64503500 Score: 56
Period size: 21 Copynumber: 4.1 Consensus size: 21
64503402 ATTAGCACTA
64503412 AAACAACATCAAAACAACACC
1 AAACAACATCAAAACAACACC
* * * *
64503433 AAACAGCATAAAAATAGCA-C
1 AAACAACATCAAAACAACACC
* * *
64503453 AAAAAAGCAGC-AAACAACACGAA
1 AAACAA-CATCAAAACAACAC--C
*
64503476 AAACAACATCACCAACAACACC
1 AAACAACATCA-AAACAACACC
64503498 AAA
1 AAA
64503501 TCAGTACTAA
Statistics
Matches: 47, Mismatches: 15, Indels: 11
0.64 0.21 0.15
Matches are distributed among these distances:
20 11 0.23
21 17 0.36
22 6 0.13
23 5 0.11
24 8 0.17
ACGTcount: A:0.62, C:0.28, G:0.06, T:0.04
Consensus pattern (21 bp):
AAACAACATCAAAACAACACC
Found at i:64503681 original size:18 final size:18
Alignment explanation
Indices: 64503655--64503689 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
64503645 AATCGAAGAA
*
64503655 ACATTATCCTCATCGTCC
1 ACATCATCCTCATCGTCC
64503673 ACATCATCCTCATCGTC
1 ACATCATCCTCATCGTC
64503690 ATCACCATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.40, G:0.06, T:0.31
Consensus pattern (18 bp):
ACATCATCCTCATCGTCC
Found at i:64509563 original size:3 final size:3
Alignment explanation
Indices: 64509472--64509543 Score: 69
Period size: 3 Copynumber: 24.0 Consensus size: 3
64509462 ATTTTGTAGC
* *
64509472 ATT ATTT ATT ATT A-T ATT AACT GTT ATT ATT ATT ATT ATT ATT ATT
1 ATT A-TT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
64509518 A-T ATT CATT AAT A-T ATT ATT ATT ATT
1 ATT ATT -ATT ATT ATT ATT ATT ATT ATT
64509544 TTTACTACAC
Statistics
Matches: 58, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
2 6 0.10
3 44 0.76
4 8 0.14
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:64509610 original size:25 final size:24
Alignment explanation
Indices: 64509507--64509621 Score: 72
Period size: 26 Copynumber: 4.5 Consensus size: 24
64509497 ATTATTATTA
*
64509507 TTATTATTATTATATTCATTA-ATAT
1 TTATTATTATTATATACA-TACAT-T
* *
64509532 ATTATTATTATTTTTACTACA-CCATT
1 -TTATTATTA-TTATA-TACATACATT
*
64509558 ATTATTATTATATATATACATACCTT
1 -TTATTATTAT-TATATACATACATT
* *
64509584 TTATTATTATTCATGTACATATATT
1 TTATTATTATT-ATATACATACATT
*
64509609 TTAAATATTATTA
1 TT-ATTATTATTA
64509622 CCATTATTAT
Statistics
Matches: 72, Mismatches: 10, Indels: 15
0.74 0.10 0.15
Matches are distributed among these distances:
24 1 0.01
25 28 0.39
26 34 0.47
27 6 0.08
28 3 0.04
ACGTcount: A:0.36, C:0.09, G:0.01, T:0.55
Consensus pattern (24 bp):
TTATTATTATTATATACATACATT
Found at i:64510112 original size:15 final size:15
Alignment explanation
Indices: 64510094--64510122 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
64510084 ATTATGTATG
64510094 TATATATTTCTTATA
1 TATATATTTCTTATA
64510109 TATATATTTCTTAT
1 TATATATTTCTTAT
64510123 TACTTCTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (15 bp):
TATATATTTCTTATA
Found at i:64511730 original size:19 final size:19
Alignment explanation
Indices: 64511708--64511746 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
64511698 TCTGTCCATC
64511708 TTAGA-AAAACCCTTTTGTT
1 TTAGAGAAAA-CCTTTTGTT
64511727 TTAGAGAAAACCTTTTGTT
1 TTAGAGAAAACCTTTTGTT
64511746 T
1 T
64511747 GTTGAGTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.44
Consensus pattern (19 bp):
TTAGAGAAAACCTTTTGTT
Found at i:64514104 original size:39 final size:40
Alignment explanation
Indices: 64513996--64514175 Score: 269
Period size: 39 Copynumber: 4.6 Consensus size: 40
64513986 ATTCGGATTG
64513996 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
64514035 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
64514075 ATAACCGGGC-AAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
64514114 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
64514154 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
64514176 TACTTGGTTT
Statistics
Matches: 130, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 67 0.52
40 63 0.48
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:64514127 original size:79 final size:79
Alignment explanation
Indices: 64513996--64514175 Score: 267
Period size: 79 Copynumber: 2.3 Consensus size: 79
64513986 ATTCGGATTG
* *
64513996 ATAACCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
1 ATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAT
*
64514061 TTGTGCGAGTTACT
66 TTGAGCGAGTTACT
64514075 ATAACCGGGC-AAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
64514139 TTTGAGCGAG-TAGCT
65 TTTGAGCGAGTTA-CT
* *
64514154 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCT-AAGCCCGAAGG
64514176 TACTTGGTTT
Statistics
Matches: 92, Mismatches: 5, Indels: 8
0.88 0.05 0.08
Matches are distributed among these distances:
78 8 0.09
79 82 0.89
80 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (79 bp):
ATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAT
TTGAGCGAGTTACT
Found at i:64522158 original size:39 final size:40
Alignment explanation
Indices: 64522050--64522229 Score: 269
Period size: 39 Copynumber: 4.6 Consensus size: 40
64522040 ATTCGGATTG
64522050 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
64522089 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
64522129 ATAACCGGGC-AAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
64522168 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
64522208 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
64522230 TACTTGGTTT
Statistics
Matches: 130, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 67 0.52
40 63 0.48
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:64522181 original size:79 final size:79
Alignment explanation
Indices: 64522050--64522229 Score: 267
Period size: 79 Copynumber: 2.3 Consensus size: 79
64522040 ATTCGGATTG
* *
64522050 ATAACCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
1 ATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAT
*
64522115 TTGTGCGAGTTACT
66 TTGAGCGAGTTACT
64522129 ATAACCGGGC-AAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
64522193 TTTGAGCGAG-TAGCT
65 TTTGAGCGAGTTA-CT
* *
64522208 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCT-AAGCCCGAAGG
64522230 TACTTGGTTT
Statistics
Matches: 92, Mismatches: 5, Indels: 8
0.88 0.05 0.08
Matches are distributed among these distances:
78 8 0.09
79 82 0.89
80 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (79 bp):
ATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAT
TTGAGCGAGTTACT
Found at i:64523934 original size:13 final size:13
Alignment explanation
Indices: 64523916--64523940 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64523906 GGGCTCACAC
64523916 GCCCATGTGGCCA
1 GCCCATGTGGCCA
64523929 GCCCATGTGGCC
1 GCCCATGTGGCC
64523941 CACACAGCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.40, G:0.32, T:0.16
Consensus pattern (13 bp):
GCCCATGTGGCCA
Found at i:64525394 original size:21 final size:21
Alignment explanation
Indices: 64525370--64525420 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
64525360 AAATTAAATT
* *
64525370 TTAATTATACATTAGTTATTA
1 TTAATTATACATAAATTATTA
*
64525391 TTAAGTT-TATATAAATTATTA
1 TTAA-TTATACATAAATTATTA
*
64525412 TTTATTATA
1 TTAATTATA
64525421 AAATATTATC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
20 2 0.08
21 20 0.83
22 2 0.08
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (21 bp):
TTAATTATACATAAATTATTA
Found at i:64525422 original size:17 final size:16
Alignment explanation
Indices: 64525396--64525429 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
64525386 TATTATTAAG
*
64525396 TTTATATAAATTATTA
1 TTTATATAAAATATTA
64525412 TTTATTATAAAATATTA
1 TTTA-TATAAAATATTA
64525429 T
1 T
64525430 CATACTATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTATATAAAATATTA
Found at i:64527622 original size:19 final size:19
Alignment explanation
Indices: 64527577--64527628 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
64527567 TGATGTGGAC
*
64527577 GATTTATTTTAATGATAGAT
1 GATTT-TTTTAATGAAAGAT
*
64527597 GACATTTTTTTAATGAAATAT
1 G--ATTTTTTTAATGAAAGAT
64527618 GATTTTTTTAA
1 GATTTTTTTAA
64527629 AATTTGTGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 10 0.36
20 1 0.04
21 13 0.46
22 4 0.14
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.52
Consensus pattern (19 bp):
GATTTTTTTAATGAAAGAT
Found at i:64528155 original size:19 final size:19
Alignment explanation
Indices: 64528125--64528181 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
64528115 ATTTTGAATG
64528125 AATTATTAAAAATATTACAA
1 AATTA-TAAAAATATTACAA
64528145 AATTATAAAAATATT-CAA
1 AATTATAAAAATATTACAA
64528163 AA--ATAATAAA-ATTACAA
1 AATTATAA-AAATATTACAA
64528180 AA
1 AA
64528182 AAAATAAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
16 7 0.20
17 8 0.23
18 5 0.14
19 10 0.29
20 5 0.14
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (19 bp):
AATTATAAAAATATTACAA
Found at i:64528164 original size:10 final size:9
Alignment explanation
Indices: 64528128--64528217 Score: 53
Period size: 9 Copynumber: 10.0 Consensus size: 9
64528118 TTGAATGAAT
64528128 TATTAAAAA
1 TATTAAAAA
64528137 TATTACAAAA
1 TATTA-AAAA
64528147 T-TATAAAAA
1 TAT-TAAAAA
64528156 TATTCAAAAA
1 TATT-AAAAA
* *
64528166 TAATAAAAT
1 TATTAAAAA
*
64528175 TA-CAAAAA
1 TATTAAAAA
* * *
64528183 AAAT-AAAT
1 TATTAAAAA
64528191 TATTAAAAA
1 TATTAAAAA
*
64528200 TCA-TAAAAT
1 T-ATTAAAAA
64528209 TATTAAAAA
1 TATTAAAAA
64528218 CTGCAAAAAA
Statistics
Matches: 61, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
8 11 0.18
9 33 0.54
10 17 0.28
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (9 bp):
TATTAAAAA
Found at i:64528173 original size:18 final size:17
Alignment explanation
Indices: 64528133--64528217 Score: 73
Period size: 17 Copynumber: 4.8 Consensus size: 17
64528123 TGAATTATTA
*
64528133 AAAATATTACAAAATTAT
1 AAAATATTA-AAAATAAT
64528151 AAAAATATTCAAAAATAAT
1 -AAAATATT-AAAAATAAT
* *
64528170 AAAAT-TACAAAAAAAAT
1 AAAATAT-TAAAAATAAT
* *
64528187 AAATTATTAAAAATCAT
1 AAAATATTAAAAATAAT
64528204 AAAATTATTAAAAA
1 AAAA-TATTAAAAA
64528218 CTGCAAAAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
17 23 0.43
18 15 0.28
19 15 0.28
20 1 0.02
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (17 bp):
AAAATATTAAAAATAAT
Done.