Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 216 of 325
Found at i:66939657 original size:11 final size:11
Alignment explanation
Indices: 66939628--66939664 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
66939618 TTTTAGATCA
*
66939628 ATTACCGAAGT
1 ATTACCGGAGT
66939639 ATTACCGGAGT
1 ATTACCGGAGT
66939650 ATTACCGGAGT
1 ATTACCGGAGT
66939661 -TTAC
1 ATTAC
66939665 AGATCAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 4 0.16
11 21 0.84
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (11 bp):
ATTACCGGAGT
Found at i:66940339 original size:133 final size:132
Alignment explanation
Indices: 66940104--66940368 Score: 370
Period size: 133 Copynumber: 2.0 Consensus size: 132
66940094 TAAGACACGT
* * *
66940104 GCCCGTGTCTCTGCCCATATGACCAATTCTAAGCATTCTGTTTCTCAATTTTTAGATGCAGGGGA
1 GCCCGTGTCTCTACCCATATGACCAATTCTAAACATTCTGTTTCTCAATTTTTAGATGCAAGGGA
* * *
66940169 CACACGGCCAAACCACACGCCTATGCGTATGGTCGTGTGTGACACACGGTTGAGACACACAAACC
66 CACACGGCCAAACCACACGCCCATGCGTATGGCCGTGTGTCACACACGGTTGAGACACACAAACC
66940234 AC
131 AC
* * * *
66940236 GCCCGTGTTTCTACCCTTGTGACCAATTCTAAATAGTT-TGTTTCTCAATTTTTAAGATGCAAGG
1 GCCCGTGTCTCTACCCATATGACCAATTCTAAACA-TTCTGTTTCTCAATTTTT-AGATGCAAGG
* * * * *
66940300 GACACATGGCCAAAGCATACGCCCGTGTGTATGGCCGTGTGTCACACACGGTTGAGACACACAAA
64 GACACACGGCCAAACCACACGCCCATGCGTATGGCCGTGTGTCACACACGGTTGAGACACACAAA
66940365 CCAC
129 CCAC
66940369 ATACACATGC
Statistics
Matches: 116, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
132 44 0.38
133 72 0.62
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (132 bp):
GCCCGTGTCTCTACCCATATGACCAATTCTAAACATTCTGTTTCTCAATTTTTAGATGCAAGGGA
CACACGGCCAAACCACACGCCCATGCGTATGGCCGTGTGTCACACACGGTTGAGACACACAAACC
AC
Found at i:66952478 original size:2 final size:2
Alignment explanation
Indices: 66952471--66952513 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
66952461 TTTAGTTACG
66952471 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66952513 A
1 A
66952514 ACGAAAGTTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:66966117 original size:2 final size:2
Alignment explanation
Indices: 66966110--66966141 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
66966100 CACATTCGGC
66966110 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
66966142 AATGTATGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:66966730 original size:28 final size:28
Alignment explanation
Indices: 66966698--66966767 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
66966688 AATGAGATTG
* *
66966698 GCACTAAGCGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
66966726 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
66966754 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
66966768 GACTTACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 36 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:66968583 original size:40 final size:40
Alignment explanation
Indices: 66968493--66968611 Score: 157
Period size: 40 Copynumber: 3.0 Consensus size: 40
66968483 TCGAATGATG
* * * *
66968493 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
66968534 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
66968574 TCCGGGTTAATTCCCGAAGGCAATTGTGCGAATTACTA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
66968612 TAACAGGGCT
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
40 43 0.62
41 26 0.38
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:66968629 original size:40 final size:41
Alignment explanation
Indices: 66968496--66968637 Score: 123
Period size: 40 Copynumber: 3.5 Consensus size: 41
66968486 AATGATGTCC
** * * *
66968496 GGGCTAA-GTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCC
1 GGGCTAATGTCCCGAAGGCAATTGTGCGAA-TTACTAAATCA
* * * * *
66968537 GGGTTAA-GTCCCAAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAATGTCCCGAAGGCAATTGTGCGAATTACTAAATCA
*
66968577 GGGTTAAT-TCCCGAAGGCAATTGTGCGAATTACTATAA-CA
1 GGGCTAATGTCCCGAAGGCAATTGTGCGAATTACTA-AATCA
*
66968617 GGGCT-ATGTCCCGAAGACAAT
1 GGGCTAATGTCCCGAAGGCAAT
66968638 CGAGCTAGTC
Statistics
Matches: 86, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 58 0.67
41 26 0.30
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (41 bp):
GGGCTAATGTCCCGAAGGCAATTGTGCGAATTACTAAATCA
Found at i:66976603 original size:40 final size:40
Alignment explanation
Indices: 66976513--66976652 Score: 174
Period size: 40 Copynumber: 3.5 Consensus size: 40
66976503 TCGAATGATG
* * *
66976513 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
66976554 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
66976594 TCCGGGTTAATTCCCGAAGGCAATTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
66976635 -CCGGGCTATGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
66976653 ACAATCGAGC
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
40 59 0.67
41 29 0.33
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:66985716 original size:28 final size:28
Alignment explanation
Indices: 66985684--66985753 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
66985674 AATGAGATTG
*
66985684 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
66985712 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
66985740 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
66985754 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:66994991 original size:87 final size:88
Alignment explanation
Indices: 66994723--66995124 Score: 308
Period size: 87 Copynumber: 4.6 Consensus size: 88
66994713 AAAATCAAAG
* * * * * * *
66994723 ACATAGCAGATTTGACTTTCAGATGTTTTTCACATCAAAGTAGATCTAAGATAACAGATCTGGCG
1 ACATAGCAGATTTAACCTTCAGATG-ATTT-ACACCAAAGCAGATCCAAGATAACAGATCTGGCA
66994788 TCTCCATATTCGACGGAGGGCAGAC
64 TCTCCATATTCGACGGAGGGCAGAC
* * ** *
66994813 ACATAGCAGATCTAACCTTCAGATG-TTTATACTGAAGCAGATCCAAGAT----GATTTGGCAT-
1 ACATAGCAGATTTAACCTTCAGATGATTTACACCAAAGCAGATCCAAGATAACAGATCTGGCATC
* * ** * * *
66994872 T-CTTGTGTTTAC-AAGGAACAAATCGAAG
66 TCCATAT-TCGACGGAGG-GC--A--G-AC
* *
66994900 ACATAGCAGATTTGA-CTTCGGATG-TTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCA
1 ACATAGCAGATTTAACCTTCAGATGATT-T-ACACCAAAGCAGATCCAAGATAACAGATCTGGCA
*
66994963 TCTCCAT-TTCGACGGAGGGCAGAT
64 TCTCCATATTCGACGGAGGGCAGAC
* * ** * * * *
66994987 ACATAGCAGATCTAACCTTCAGATGATTT-TACTGAATCAGATCTAAGATAACAGATTTGGCGTC
1 ACATAGCAGATTTAACCTTCAGATGATTTACACCAAAGCAGATCCAAGATAACAGATCTGGCATC
*
66995051 TCCATATTCGACGGAGAGCAGAC
66 TCCATATTCGACGGAGGGCAGAC
* **
66995074 ACATAGCAGATTTAACCTTCAGAT-ATTTATACTGAAGCAGATCCAAGATAA
1 ACATAGCAGATTTAACCTTCAGATGATTTACACCAAAGCAGATCCAAGATAA
66995125 TTTGGCATCC
Statistics
Matches: 246, Mismatches: 46, Indels: 43
0.73 0.14 0.13
Matches are distributed among these distances:
81 6 0.02
82 5 0.02
83 8 0.03
84 1 0.00
86 48 0.20
87 102 0.41
88 31 0.13
89 2 0.01
90 23 0.09
92 13 0.05
93 5 0.02
94 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (88 bp):
ACATAGCAGATTTAACCTTCAGATGATTTACACCAAAGCAGATCCAAGATAACAGATCTGGCATC
TCCATATTCGACGGAGGGCAGAC
Found at i:66995001 original size:174 final size:179
Alignment explanation
Indices: 66994631--66995036 Score: 524
Period size: 174 Copynumber: 2.3 Consensus size: 179
66994621 CAGACCAAAG
** *
66994631 CATAGCAGATCTGGCCTTCATG-TGTTTACACTGAAGCAGATCCAAGATAACAAGATTTGGCTTC
1 CATAGCAGATCTAACCTTCA-GATGTTTATACTGAAGCAGATCCAAGAT----AGATTTGGCTTC
* * *
66994695 TCTATCTTCAACGAGGAGAAAATCAAAGACATAGCAGATTTGACTTTCAGATGTTTTTCACATCA
61 TCTATCTTCAACAAGGAGAAAATCAAAGACATAGCAGATTTGACTTTCAGATGTTTCTCACACCA
* * *
66994760 AAGTAGATCTAAGATAACAGATCTGGCGTCTCCATATTCGACGGAGGGCAGACA
126 AAGCAGATCCAAGATAACAGATCTGGCATCTCCATATTCGACGGAGGGCAGACA
*
66994814 CATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGAT-GATTTGGCATTCT-TG
1 CATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATAGATTTGGC-TTCTCTA
* * * *
66994877 TGTT-TACAAGGA-ACAAATCGAAGACATAGCAGATTTGAC-TTCGGATG-TTCTCACACCAAAG
65 TCTTCAACAAGGAGA-AAATCAAAGACATAGCAGATTTGACTTTCAGATGTTTCTCACACCAAAG
*
66994938 CAGATCCAAGATAACAGATCTGGCATCTCCAT-TTCGACGGAGGGCAGATA
129 CAGATCCAAGATAACAGATCTGGCATCTCCATATTCGACGGAGGGCAGACA
* *
66994988 CATAGCAGATCTAACCTTCAGATGATTT-TACTGAATCAGATCTAAGATA
1 CATAGCAGATCTAACCTTCAGATG-TTTATACTGAAGCAGATCCAAGATA
66995037 ACAGATTTGG
Statistics
Matches: 201, Mismatches: 17, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
174 59 0.29
175 44 0.22
176 8 0.04
177 30 0.15
178 12 0.06
179 4 0.02
182 1 0.00
183 43 0.21
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (179 bp):
CATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATAGATTTGGCTTCTCTAT
CTTCAACAAGGAGAAAATCAAAGACATAGCAGATTTGACTTTCAGATGTTTCTCACACCAAAGCA
GATCCAAGATAACAGATCTGGCATCTCCATATTCGACGGAGGGCAGACA
Found at i:66995039 original size:86 final size:87
Alignment explanation
Indices: 66994764--66995124 Score: 330
Period size: 87 Copynumber: 4.1 Consensus size: 87
66994754 ACATCAAAGT
* * *
66994764 AGATCTAAGATAACAGATCTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAAC
1 AGATCCAAGATAACAGATCTGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAAC
*
66994829 CTTCAGATGTTTATACTGAAGC
66 CTTCAGATATTTATACTGAAGC
* ** * * *
66994851 AGATCCAAGAT----GATTTGGCAT-TCTTGTGTTTAC-AAGGA-A-CAAATCGAAGACATAGCA
1 AGATCCAAGATAACAGATCTGGCATCTC-CAT-ATT-CGACGGAGAGC--A--G-ACACATAGCA
* * * * * **
66994908 GATTTGA-CTTCGGATGTTCTCACACCAAAGC
58 GATCTAACCTTCAGATATT-T-ATACTGAAGC
* *
66994939 AGATCCAAGATAACAGATCTGGCATCTCCAT-TTCGACGGAGGGCAGATACATAGCAGATCTAAC
1 AGATCCAAGATAACAGATCTGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAAC
*
66995003 CTTCAGATGATTT-TACTGAATC
66 CTTCAGAT-ATTTATACTGAAGC
* * * *
66995025 AGATCTAAGATAACAGATTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATTTAAC
1 AGATCCAAGATAACAGATCTGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAAC
66995090 CTTCAGATATTTATACTGAAGC
66 CTTCAGATATTTATACTGAAGC
66995112 AGATCCAAGATAA
1 AGATCCAAGATAA
66995125 TTTGGCATCC
Statistics
Matches: 215, Mismatches: 37, Indels: 44
0.73 0.12 0.15
Matches are distributed among these distances:
82 3 0.01
83 9 0.04
84 7 0.03
85 1 0.00
86 48 0.22
87 97 0.45
88 27 0.13
89 3 0.01
90 7 0.03
92 11 0.05
93 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (87 bp):
AGATCCAAGATAACAGATCTGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAAC
CTTCAGATATTTATACTGAAGC
Found at i:66995165 original size:87 final size:85
Alignment explanation
Indices: 66994626--66995205 Score: 288
Period size: 87 Copynumber: 6.6 Consensus size: 85
66994616 GGTAACAGAC
** *
66994626 CAAAG-CATAGCAGATCTGGCCTTCATG-TGTTTACACTGAAGCAGATCCAAGATAACAAGATTT
1 CAAAGACATAGCAGATCTAACCTTCA-GATGTTTATACTGAAGCAGATCCAAGAT---AAGATTT
* * * *
66994689 GGCTTCTC-TATCTTCAACGAGGAGAAAAT
62 GGCATCTCGTGT-TTCGA--AGGAG---AG
* * * * * * * *
66994718 CAAAGACATAGCAGATTTGACTTTCAGATGTTTTTCACATCAAAGTAGATCTAAGATAACAGATC
1 CAAAGACATAGCAGATCTAACCTTCAGATGTTTAT-AC-T-GAAGCAGATCCAAGAT-A-AGATT
* * * * *
66994783 TGGCGTCTCCAT-ATTCGACGGAGGG
61 TGGCATCT-CGTGTTTCGAAGGAGAG
* *
66994808 CAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGAT--GATTTGGCA
1 CAAAGACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATAAGATTTGGCA
* * *
66994871 TTCTTGTGTTTAC-AAGGAACAAAT
66 -TCTCGTGTTT-CGAAGG---AGAG
* * * * * ** *
66994895 CGAAGACATAGCAGATTTGA-CTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCT
1 CAAAGACATAGCAGATCTAACCTTCAGATGTT-T-ATACTGAAGCAGATCCAAGAT-A-AGATTT
** * *
66994959 GGCATCTC-CATTTCGACGGAGGG
62 GGCATCTCGTGTTTCGAAGGAGAG
* * * *
66994982 CAGATACATAGCAGATCTAACCTTCAGATGATTT-TACTGAATCAGATCTAAGATAACAGATTTG
1 CAAAGACATAGCAGATCTAACCTTCAGATG-TTTATACTGAAGCAGATCCAAGAT-A-AGATTTG
* * * *
66995046 GCGTCTCCAT-ATTCGACGGAGAG
63 GCATCT-CGTGTTTCGAAGGAGAG
* * * *
66995069 CAGACACATAGCAGATTTAACCTTCAGATATTTATACTGAAGCAGATCCAAGAT-A-ATTTGGCA
1 CAAAGACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATAAGATTTGGCA
*
66995132 TCCTCGTGTTTAC-AAGGAGCAAAT
66 T-CTCGTGTTT-CGAAGGAG---AG
**
66995156 CAAAGACATAGCAGATCTAACCTTCAGATGTTTACGCTGAAGCAGATCCA
1 CAAAGACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCA
66995206 TTTACTGTAA
Statistics
Matches: 373, Mismatches: 83, Indels: 69
0.71 0.16 0.13
Matches are distributed among these distances:
83 18 0.05
84 18 0.05
85 2 0.01
86 42 0.11
87 148 0.40
88 28 0.08
89 5 0.01
90 35 0.09
91 3 0.01
92 14 0.04
93 26 0.07
94 3 0.01
95 16 0.04
96 14 0.04
97 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (85 bp):
CAAAGACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATAAGATTTGGCA
TCTCGTGTTTCGAAGGAGAG
Found at i:66995279 original size:42 final size:42
Alignment explanation
Indices: 66995232--66995365 Score: 232
Period size: 42 Copynumber: 3.2 Consensus size: 42
66995222 TGGCCCTTAG
* * *
66995232 GCCCATTTCAAAATCACATGTAATGTCAATGGATGTATGGAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
66995274 GCCCATTTGAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
66995316 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
66995358 GCCCATTT
1 GCCCATTT
66995366 GGGGAACCCA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 87 1.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:66995518 original size:24 final size:24
Alignment explanation
Indices: 66995477--66995574 Score: 58
Period size: 25 Copynumber: 4.0 Consensus size: 24
66995467 GCTTTATCAT
**
66995477 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGGAGGCAAAGCC-CTTTTA
*
66995502 ATAACT-GAGGCAAAGCCCTTTCTG
1 ATAACTGGAGGCAAAGCCCTTT-TA
* * *
66995526 ATAAACTGG-GGAAAAGGCCTTTTCG
1 AT-AACTGGAGGCAAAGCCCTTTT-A
* *
66995551 GTACACTGG-GGCAGAGCCCTTTTA
1 ATA-ACTGGAGGCAAAGCCCTTTTA
66995575 GCACTTCCTC
Statistics
Matches: 58, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
23 4 0.07
24 14 0.24
25 39 0.67
26 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (24 bp):
ATAACTGGAGGCAAAGCCCTTTTA
Found at i:66996413 original size:27 final size:27
Alignment explanation
Indices: 66996383--66996447 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
66996373 GGGCATATTC
66996383 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
66996410 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
66996437 GTCTTTTTACC
1 GTCATTTTACC
66996448 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:66996614 original size:27 final size:26
Alignment explanation
Indices: 66996477--66996714 Score: 174
Period size: 27 Copynumber: 8.8 Consensus size: 26
66996467 ATTTCTTCCT
* * * *
66996477 ACAAGGGTGTTTTGGTAAATCTATAA
1 ACAAGGGTATTTTGGTAATTTTACAA
* **
66996503 ACCAAGGGTATTTTAGTAATTTTGTAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* * *
66996530 ACCAATGGTATTTCT-ATAATTTTTAGAA
1 A-CAAGGGTATTT-TGGTAA-TTTTACAA
**
66996558 AGTCAAGGGTATTTCT-GTAATTTTGTAA
1 A--CAAGGGTATTT-TGGTAATTTTACAA
66996586 ATCAAGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
** * *
66996613 ATTTAGGGTATTTCGGTAATTTCACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* *
66996640 ACCAGTGGTATTTCGGTAATTTTACAA
1 ACAAG-GGTATTTTGGTAATTTTACAA
*
66996667 ACTAGGGGTATTTTGGTAATTTTACAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
*
66996694 ACTAGGGGTATTTTGGTAATT
1 AC-AAGGGTATTTTGGTAATT
66996715 CTAACCTACA
Statistics
Matches: 179, Mismatches: 26, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.02
27 144 0.80
28 16 0.09
29 15 0.08
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (26 bp):
ACAAGGGTATTTTGGTAATTTTACAA
Found at i:66996650 original size:54 final size:54
Alignment explanation
Indices: 66996564--66996747 Score: 183
Period size: 54 Copynumber: 3.4 Consensus size: 54
66996554 AGAAAGTCAA
* *** * * *
66996564 GGGTATTTCTGTAATTTTGTAAATCAAGGGTATTTTGGTAATTTTACAAATTTA-
1 GGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAA-CTAG
* *
66996618 GGGTATTTCGGTAATTTCACAAACCAGTGGTATTTCGGTAATTTTACAAACTAG
1 GGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
* * * * **
66996672 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTAACCTAC-AG
1 GGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATT-TTACAAACTAG
* *
66996726 GGATATTTCAGTAATTTCACAA
1 GGGTATTTCGGTAATTTCACAA
66996748 TCGAGGATAA
Statistics
Matches: 107, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
53 2 0.02
54 100 0.93
55 5 0.05
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.40
Consensus pattern (54 bp):
GGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
Found at i:66996682 original size:81 final size:81
Alignment explanation
Indices: 66996565--66996714 Score: 214
Period size: 81 Copynumber: 1.9 Consensus size: 81
66996555 GAAAGTCAAG
* ** *
66996565 GGTATTTCTGTAATTTTGTAAATCAAGGGTATTTTGGTAATTTTACAAATTTA-GGGTATTTCGG
1 GGTATTTCGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTCGG
66996629 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
* *
66996646 GGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGTATTTCGGTAATTTTACAAATC-AAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGG
66996710 TAATT
65 TAATT
66996715 CTAACCTACA
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
80 3 0.05
81 58 0.95
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.42
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGT
AATTTCACAAACCAGT
Found at i:66996733 original size:81 final size:81
Alignment explanation
Indices: 66996591--66996747 Score: 203
Period size: 81 Copynumber: 1.9 Consensus size: 81
66996581 TGTAAATCAA
* * *
66996591 GGGTATTTTGGTAATTTTACAAATTTAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTCGG
1 GGGTATTTTGGTAATTTTACAAATCTAGGGTATTTCGGTAATTTAACAAACCAGTGGTATTTCAG
*
66996656 TAATTTTACAAACTAG
66 TAATTTCACAAACTAG
* **
66996672 GGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTCTAACCTA-CAG-GGATATTT
1 GGGTATTTTGGTAATTTTACAAATCTA-GGGTATTTCGGTAATT-TAACAAACCAGTGG-TATTT
66996734 CAGTAATTTCACAA
63 CAGTAATTTCACAA
66996748 TCGAGGATAA
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
80 4 0.06
81 58 0.88
82 4 0.06
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAATCTAGGGTATTTCGGTAATTTAACAAACCAGTGGTATTTCAG
TAATTTCACAAACTAG
Found at i:66996785 original size:27 final size:27
Alignment explanation
Indices: 66996746--66996943 Score: 263
Period size: 27 Copynumber: 7.3 Consensus size: 27
66996736 GTAATTTCAC
* *
66996746 AATCGAGGATAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
66996773 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
66996800 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* *
66996827 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* *
66996854 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * * * *
66996881 AATTGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
**
66996908 AATCGAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAATGGTAATTTTGTA
66996935 AATCGAGGG
1 AATCGAGGG
66996944 CATTTCAGTA
Statistics
Matches: 151, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 149 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:67000435 original size:39 final size:39
Alignment explanation
Indices: 67000381--67000621 Score: 365
Period size: 39 Copynumber: 6.2 Consensus size: 39
67000371 TGTGTATGAA
* *
67000381 TGTGCGAATTGTGATATCTGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
67000420 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
67000459 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
67000498 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
67000537 GGTGCGAGCTATGATATCCGGGCTAAGCCCAAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
67000576 TGTGCGAGTTGTGATATCCAGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
67000616 TGTGCG
1 TGTGCG
67000622 GGTTACCATA
Statistics
Matches: 182, Mismatches: 19, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
39 166 0.91
40 16 0.09
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:67007876 original size:39 final size:40
Alignment explanation
Indices: 67007698--67007880 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
67007688 CCGCACCAAG
* * * * * * * *
67007698 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
67007738 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
67007778 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
67007818 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
67007857 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
67007881 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:67015882 original size:39 final size:40
Alignment explanation
Indices: 67015704--67015886 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
67015694 CCGCACCAAG
* * * * * * * *
67015704 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
67015744 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
67015784 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
67015824 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
67015863 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
67015887 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:67025178 original size:14 final size:15
Alignment explanation
Indices: 67025159--67025187 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
67025149 CAACTTGATC
67025159 ACCATC-CATTTTTT
1 ACCATCTCATTTTTT
67025173 ACCATCTCATTTTTT
1 ACCATCTCATTTTTT
67025188 TCGCATAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.21, C:0.28, G:0.00, T:0.52
Consensus pattern (15 bp):
ACCATCTCATTTTTT
Found at i:67027606 original size:24 final size:24
Alignment explanation
Indices: 67027591--67027642 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
67027581 AATCAAAGTC
*
67027591 AAATATATTATGCTAATAAATACT
1 AAATATATTATACTAATAAATACT
*
67027615 AAATATATTATACTAATAAATGCT
1 AAATATATTATACTAATAAATACT
67027639 AAAT
1 AAAT
67027643 CTTCTAGAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:67037034 original size:27 final size:27
Alignment explanation
Indices: 67036995--67037081 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 27
67036985 GGATAAGTTA
* *
67036995 TAGAATTATTGAAATACCCTTGTAGGG
1 TAGAAATACTGAAATACCCTTGTAGGG
67037022 TAGAAATACTGAAATACCCTTGTAGGG
1 TAGAAATACTGAAATACCCTTGTAGGG
* * * *
67037049 TAGAATTACCGAGATACCCTTGTGGGG
1 TAGAAATACTGAAATACCCTTGTAGGG
67037076 TA-AAAT
1 TAGAAAT
67037082 TACCATTTTG
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 3 0.06
27 50 0.94
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (27 bp):
TAGAAATACTGAAATACCCTTGTAGGG
Found at i:67037779 original size:27 final size:26
Alignment explanation
Indices: 67037735--67037786 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
67037725 CTCGCTGCAA
*
67037735 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
67037762 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
67037787 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:67037856 original size:71 final size:67
Alignment explanation
Indices: 67037716--67037857 Score: 185
Period size: 71 Copynumber: 2.1 Consensus size: 67
67037706 GAGGAAGCGT
* * * *
67037716 TCTGGAAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGAAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTATTCTGGTGACCTAGCCACAA
67037781 TA
66 TA
* * *
67037783 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGTCACATACATATATCTATTCTGGTGGCCTAGCC
1 TCTGGAAGCCTCGCTGCAATCTGGTGGCCTCG-C-C--ACATATATCTATTCTGGTGACCTAGCC
67037848 ACAATA
62 ACAATA
67037854 TCTG
1 TCTG
67037858 TATCTGGTGA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
67 30 0.47
68 1 0.02
69 1 0.02
71 32 0.50
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.30
Consensus pattern (67 bp):
TCTGGAAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTATTCTGGTGACCTAGCCACAA
TA
Found at i:67038038 original size:31 final size:31
Alignment explanation
Indices: 67038003--67038106 Score: 145
Period size: 31 Copynumber: 3.4 Consensus size: 31
67037993 TTGCATTCAC
* * *
67038003 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
* * *
67038034 ATTCTGATTCTAATTCTATCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
67038065 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
*
67038096 ATTCTAATTCT
1 ATTCTGATTCT
67038107 CATTTTGATT
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.21, C:0.20, G:0.12, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATTCTG
Found at i:67038042 original size:6 final size:6
Alignment explanation
Indices: 67038003--67038127 Score: 78
Period size: 6 Copynumber: 20.3 Consensus size: 6
67037993 TTGCATTCAC
* * *
67038003 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
67038051 ATCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTA
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
67038102 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
67038128 AATGTTTCTA
Statistics
Matches: 93, Mismatches: 15, Indels: 22
0.72 0.12 0.17
Matches are distributed among these distances:
5 6 0.06
6 74 0.80
7 9 0.10
8 4 0.04
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:67038136 original size:18 final size:17
Alignment explanation
Indices: 67038115--67038148 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
67038105 CTCATTTTGA
*
67038115 TTCTAGTTCTGATAATGT
1 TTCTAATTCTG-TAATGT
67038133 TTCTAATTCTGTAATG
1 TTCTAATTCTGTAATG
67038149 GGCTAAGGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.12, G:0.15, T:0.50
Consensus pattern (17 bp):
TTCTAATTCTGTAATGT
Found at i:67044953 original size:49 final size:49
Alignment explanation
Indices: 67044891--67045175 Score: 491
Period size: 49 Copynumber: 5.8 Consensus size: 49
67044881 ATACATATCG
* *
67044891 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTCCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
* *
67044940 CATTCATCACATCGGCCCTTAGGCCTTATCACATACATATACATTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
67044989 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
67045038 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
*
67045087 CATTCATCACATCGGCCATTAGGCCTTATCACATATGTATACATTTTCA
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
* *
67045136 CATTCATCACATTGGCCATTCA-GCCTTATCACACATATAT
1 CATTCATCACATCGGCCATT-AGGCCTTATCACATATATAT
67045176 GTATATCATA
Statistics
Matches: 225, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
49 224 1.00
50 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
Found at i:67048091 original size:41 final size:39
Alignment explanation
Indices: 67047992--67048093 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 39
67047982 GAATCACGTA
* * *
67047992 CCTTCGGGATTTAGCCCGGATTTAGTAACTTGCACCAATG
1 CCTTCGGGAATTA-CCCGGATTTAGTAACTTGCACAAAAG
*
67048032 CCTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAG
1 CCTTCGGGAATT-ACCCGGATTTAGTAACTT-GCACAAAAG
*
67048073 CCTTCGGGACTTACCCCGGAT
1 CCTTCGGGAATTA-CCCGGAT
67048094 ACCATTCGAA
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
40 28 0.52
41 26 0.48
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CCTTCGGGAATTACCCGGATTTAGTAACTTGCACAAAAG
Found at i:67048886 original size:40 final size:40
Alignment explanation
Indices: 67048837--67048988 Score: 259
Period size: 40 Copynumber: 3.8 Consensus size: 40
67048827 CCAGTATGAT
* * * *
67048837 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
67048877 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
67048917 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
67048957 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
67048989 CTCAATTCTC
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 107 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:67050930 original size:37 final size:37
Alignment explanation
Indices: 67050880--67050952 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
67050870 GTCTTGCCCG
*
67050880 GACATAATCTCCACACGTAGTCATCGGGTCGTACCCA
1 GACATAATCTCCACACGTAGTCATCAGGTCGTACCCA
67050917 GACATAATCTCCACACGTAGTCATCAGGTCGTACCC
1 GACATAATCTCCACACGTAGTCATCAGGTCGTACCC
67050953 GAAACATATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
GACATAATCTCCACACGTAGTCATCAGGTCGTACCCA
Found at i:67051098 original size:49 final size:49
Alignment explanation
Indices: 67051025--67051267 Score: 380
Period size: 49 Copynumber: 5.0 Consensus size: 49
67051015 CGGCTTTACC
* * * *
67051025 ACATATACA-TATCGCATTCATCACATCAGCCCTTAGGCCTTATCACAT
1 ACATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
* *
67051073 ACATATACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ACATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
67051122 ACATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ACATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
67051171 ATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ACATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
** * *
67051220 ATGTATACATTTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 ACATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
67051268 CATATATGTA
Statistics
Matches: 183, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
48 9 0.05
49 174 0.95
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (49 bp):
ACATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
Found at i:67057899 original size:24 final size:24
Alignment explanation
Indices: 67057867--67057922 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
67057857 AACCTAATTG
* *
67057867 TAATCAATGTCAAATATATTATGC
1 TAATAAATGTCAAATATATTATAC
* *
67057891 TAATAAATGTTAAATATATTGTAC
1 TAATAAATGTCAAATATATTATAC
67057915 TAATAAAT
1 TAATAAAT
67057923 ATTATATCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.39
Consensus pattern (24 bp):
TAATAAATGTCAAATATATTATAC
Found at i:67058008 original size:2 final size:2
Alignment explanation
Indices: 67058001--67058034 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
67057991 TCATACAACT
67058001 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
67058035 AATTTATTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:67059336 original size:23 final size:23
Alignment explanation
Indices: 67059310--67059357 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
67059300 GGAAAGATAG
67059310 ATTTTATTAGCATACTTCATTAA
1 ATTTTATTAGCATACTTCATTAA
67059333 ATTTTATTAGCATACTTCATTAA
1 ATTTTATTAGCATACTTCATTAA
67059356 AT
1 AT
67059358 GACAATTGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.04, T:0.48
Consensus pattern (23 bp):
ATTTTATTAGCATACTTCATTAA
Found at i:67064464 original size:40 final size:39
Alignment explanation
Indices: 67064419--67064548 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
67064409 CGGAATATAA
67064419 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
67064459 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
67064499 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
67064539 CCGGATATAA
1 CCGGATATAA
67064549 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:67064563 original size:40 final size:40
Alignment explanation
Indices: 67064435--67064586 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
67064425 ATAACCATGT
* * *
67064435 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
67064475 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
67064515 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
67064555 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
67064587 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:67064569 original size:80 final size:80
Alignment explanation
Indices: 67064435--67064584 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
67064425 ATAACCATGT
*
67064435 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
67064499 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
67064515 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
67064578 CCCGGAT
64 CCCGGAT
67064585 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:67066829 original size:29 final size:29
Alignment explanation
Indices: 67066796--67066956 Score: 178
Period size: 29 Copynumber: 5.6 Consensus size: 29
67066786 GTGACGAGAT
*
67066796 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
67066825 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
67066854 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
67066883 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* ** * * ***
67066912 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
67066941 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
67066957 GGCTTAAATT
Statistics
Matches: 115, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 115 1.00
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:67074640 original size:29 final size:29
Alignment explanation
Indices: 67074607--67074707 Score: 159
Period size: 29 Copynumber: 3.5 Consensus size: 29
67074597 GTGACGAGAT
67074607 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
67074636 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
67074665 T-GCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
67074693 TGACACTATGTGTGC
1 TGGCACTAAGTGTGC
67074708 AAGCTGAAAA
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 26 0.39
29 41 0.61
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:67074716 original size:28 final size:28
Alignment explanation
Indices: 67074609--67074720 Score: 145
Period size: 29 Copynumber: 4.0 Consensus size: 28
67074599 GACGAGATTG
* *
67074609 GCACTAAGTGTGCGTGCTGGAAATATAT
1 GCACTAAGTGTGCATGCTGGAAAAATAT
* *
67074637 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 -GCACTAAGTGTGCATGCTGGAAAAATAT
67074666 GCACTAAGTGTGCATGCTGGAAAAATAT
1 GCACTAAGTGTGCATGCTGGAAAAATAT
* *
67074694 GACACTATGTGTGCAAGCT-GAAAAATA
1 G-CACTAAGTGTGCATGCTGGAAAAATA
67074721 CGGGCTGGGT
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
28 35 0.45
29 43 0.55
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.26
Consensus pattern (28 bp):
GCACTAAGTGTGCATGCTGGAAAAATAT
Found at i:67076380 original size:29 final size:28
Alignment explanation
Indices: 67076346--67076448 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
67076336 TACTCAATCA
*
67076346 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
67076375 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
67076404 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
67076433 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
67076449 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:67084326 original size:29 final size:27
Alignment explanation
Indices: 67084292--67084394 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
67084282 TACTCAATCA
*
67084292 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
67084321 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
67084350 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
67084379 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
67084395 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:67096205 original size:55 final size:53
Alignment explanation
Indices: 67096078--67096330 Score: 252
Period size: 55 Copynumber: 4.8 Consensus size: 53
67096068 ATTAGGGTTT
* * *
67096078 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-CATTGGTAAG-TTCATAAGGC
* * *
67096132 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * * *
67096187 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
*
67096240 AAGGATACCATGTAAGACCATGT-AAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * * *
67096288 AAGGATACCACGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
67096331 GTACCCGCGT
Statistics
Matches: 170, Mismatches: 22, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
48 21 0.12
49 17 0.10
50 1 0.01
51 2 0.01
52 24 0.14
53 32 0.19
54 30 0.18
55 39 0.23
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:67096542 original size:16 final size:16
Alignment explanation
Indices: 67096521--67096551 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67096511 ATAAATTTGA
67096521 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
67096537 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
67096552 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:67101667 original size:41 final size:41
Alignment explanation
Indices: 67101610--67101693 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
67101600 GTGAATAATC
67101610 CATACGAGCCGGGATAAAATGAGCCGACTTCGTTAACTTAT
1 CATACGAGCCGGGATAAAATGAGCCGACTTCGTTAACTTAT
67101651 CATACGAGCCGGGATAAAATGAGCCGACTTCGTTAACTTAT
1 CATACGAGCCGGGATAAAATGAGCCGACTTCGTTAACTTAT
67101692 CA
1 CA
67101694 ATCATAACCC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (41 bp):
CATACGAGCCGGGATAAAATGAGCCGACTTCGTTAACTTAT
Found at i:67106573 original size:16 final size:16
Alignment explanation
Indices: 67106554--67106584 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67106544 CTTCTTCACT
67106554 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
67106570 TACTTACTTACTTAA
1 TACTCACTTACTTAA
67106585 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:67106590 original size:20 final size:20
Alignment explanation
Indices: 67106551--67106590 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
67106541 AAACTTCTTC
* *
67106551 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
67106571 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
67106591 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:67106966 original size:55 final size:53
Alignment explanation
Indices: 67106776--67107030 Score: 245
Period size: 55 Copynumber: 4.8 Consensus size: 53
67106766 ACGCAGGTAC
* * * * *
67106776 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTT-TTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG-AA
* *
67106825 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAA
* * *
67106878 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AA
* * * * *
67106933 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAA
*
67106986 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
67107031 AAACCCTAAT
Statistics
Matches: 172, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
49 35 0.20
52 2 0.01
53 47 0.27
54 14 0.08
55 72 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAA
Found at i:67106967 original size:108 final size:110
Alignment explanation
Indices: 67106823--67107023 Score: 327
Period size: 108 Copynumber: 1.8 Consensus size: 110
67106813 ATCCTTTTGA
* *
67106823 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
67106886 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
67106931 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
67106996 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
67107024 TATCCTTAAA
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 7 0.08
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:67109932 original size:93 final size:93
Alignment explanation
Indices: 67109820--67109991 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
67109810 GCCCATAAGT
* *
67109820 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67109885 CGAGCTT-GGATGCCTAGTTACATCTCTC
66 CGAG-TTCGGATGCCTAGTTACATCTCTC
*
67109913 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67109978 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
67109992 CAAATATCCT
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:67109987 original size:46 final size:46
Alignment explanation
Indices: 67109812--67109987 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
67109802 TGTAACCCGC
* * *
67109812 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
67109858 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGC-A--T
* ***
67109904 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
67109951 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67109988 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.63
47 31 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:67115525 original size:2 final size:2
Alignment explanation
Indices: 67115518--67115542 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
67115508 TAAAAGGTGA
67115518 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
67115543 AAAACCTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67116968 original size:22 final size:22
Alignment explanation
Indices: 67116943--67117050 Score: 128
Period size: 22 Copynumber: 4.9 Consensus size: 22
67116933 TAACTCCTTC
*
67116943 GAGCTGGACAGTAAGCTCTATT
1 GAGCTGAACAGTAAGCTCTATT
*
67116965 GAGCTGAACAGTAAGCTCTAAT
1 GAGCTGAACAGTAAGCTCTATT
*
67116987 GAGCTGAATAGTAAGCTCTATT
1 GAGCTGAACAGTAAGCTCTATT
* * *
67117009 GAGCTAAAC-GATAAGCTCCAAT
1 GAGCTGAACAG-TAAGCTCTATT
*
67117031 GAGCTGAAATAGTAAGCTCT
1 GAGCTG-AACAGTAAGCTCT
67117051 TACGAGCTAT
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
21 1 0.01
22 61 0.85
23 9 0.12
24 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (22 bp):
GAGCTGAACAGTAAGCTCTATT
Found at i:67117006 original size:44 final size:44
Alignment explanation
Indices: 67116943--67117050 Score: 155
Period size: 44 Copynumber: 2.4 Consensus size: 44
67116933 TAACTCCTTC
* * * *
67116943 GAGCTGGACAGTAAGCTCTATTGAGCTGAAC-AGTAAGCTCTAAT
1 GAGCTGAATAGTAAGCTCTATTGAGCTAAACGA-TAAGCTCCAAT
67116987 GAGCTGAATAGTAAGCTCTATTGAGCTAAACGATAAGCTCCAAT
1 GAGCTGAATAGTAAGCTCTATTGAGCTAAACGATAAGCTCCAAT
67117031 GAGCTGAAATAGTAAGCTCT
1 GAGCTG-AATAGTAAGCTCT
67117051 TACGAGCTAT
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
44 44 0.76
45 14 0.24
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (44 bp):
GAGCTGAATAGTAAGCTCTATTGAGCTAAACGATAAGCTCCAAT
Found at i:67118550 original size:38 final size:38
Alignment explanation
Indices: 67118499--67118575 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
67118489 TTGTTATACA
* **
67118499 ATAAATCAGACTGTATTTCTACATCAATTGGAGAAATT
1 ATAAATCAGACTGTATCTCTACATCAACGGGAGAAATT
67118537 ATAAATCAGACTGTATCTCTACATCAACGGGAGAAATT
1 ATAAATCAGACTGTATCTCTACATCAACGGGAGAAATT
67118575 A
1 A
67118576 CATGTGATGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (38 bp):
ATAAATCAGACTGTATCTCTACATCAACGGGAGAAATT
Found at i:67121497 original size:19 final size:19
Alignment explanation
Indices: 67121473--67121510 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
67121463 GAAATGAATA
*
67121473 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
67121492 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
67121511 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:67121785 original size:2 final size:2
Alignment explanation
Indices: 67121778--67121809 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
67121768 GTAGCTAAAT
67121778 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
67121810 CATAAACAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:67122441 original size:19 final size:20
Alignment explanation
Indices: 67122408--67122447 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
67122398 ATGTATATAT
67122408 ATAAAATAAAGAAAAT-AAA
1 ATAAAATAAAGAAAATGAAA
67122427 ATAAAATAACA-AAAATGAAA
1 ATAAAATAA-AGAAAATGAAA
67122447 A
1 A
67122448 ATGAACAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
ATAAAATAAAGAAAATGAAA
Found at i:67122709 original size:18 final size:17
Alignment explanation
Indices: 67122686--67122731 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
67122676 AGAGGTTAGG
*
67122686 TTTTTTTCTTTTTCTTCA
1 TTTTTTTATTTTT-TTCA
*
67122704 TTTTTTTATTTTTTTTA
1 TTTTTTTATTTTTTTCA
67122721 -TTTTTTATTTT
1 TTTTTTTATTTT
67122732 GGGTTGTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 11 0.42
17 3 0.12
18 12 0.46
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTTTTATTTTTTTCA
Found at i:67123080 original size:44 final size:44
Alignment explanation
Indices: 67123021--67124117 Score: 1532
Period size: 44 Copynumber: 25.4 Consensus size: 44
67123011 CCCCGTCTAA
* *
67123021 TACAGAGACGCCAAATCCGTTATCTTCGATCTGCTCTTCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
67123065 TACAGAGATGCCAAATCTGTTCTCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
67123109 TACGGAGACGCCAAATCTGTTATCTTCGATCTACTCTCTGCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
67123153 TACAGAGACGCCAAATCTGTTATCTTCAATCTGCTCTCCGCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
67123197 TACAGAGATGCCAAATC----ATCTTCAATCTGCTCTTCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
67123237 TAAAGAGACGTCAAATCTATTATCTTCGATCTGCTCTCCGCAGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
67123281 TACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
67123325 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* **
67123369 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTTTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
67123413 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* **
67123453 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTTTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
67123497 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
67123537 TACAGAGACGCCAAATCTGTTATCTTC-ATCTACTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
67123580 TACAGAGACGCCAAATCTGTTATCTTC-ATCTGCTCTCTGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
67123623 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
** * *
67123667 TACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
67123711 TACA-AGACGCCAAATCTGTTATCTTCGATCTGCTCTTCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
67123754 TACAGAGAGGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
67123798 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC-C
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * **
67123841 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCTGCCAT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
67123881 TACAGAGATGCCAAATCTATTATCTTCGATCTACTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
67123925 TACAGAGACGCCAAATCTGTTATCTTCGACCTGCTCTCCACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
67123969 TACAGAGACGCCAAATCTGTTATCTTCGATCTGTTCTCCGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
67124013 TACAAAGACGCCAAATCTGTTATCTTCGATCTACTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* **
67124057 TACAGAAACGCCAAATCTGTTATCTTCGATCTGCTCTCTACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
67124101 TACAGAGACGCCAAATC
1 TACAGAGACGCCAAATC
67124118 ATCTTGGATT
Statistics
Matches: 946, Mismatches: 88, Indels: 38
0.88 0.08 0.04
Matches are distributed among these distances:
39 20 0.02
40 127 0.13
43 138 0.15
44 661 0.70
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (44 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
Found at i:67123311 original size:172 final size:173
Alignment explanation
Indices: 67123021--67124117 Score: 1422
Period size: 172 Copynumber: 6.3 Consensus size: 173
67123011 CCCCGTCTAA
*
67123021 TACAGAGACGCCAAATCCGTTATCTTCGATCTGCTCTTCGCCGCTACAGAGATGCCAAATCTGTT
1 TACAGAGACGCCAAAT-C--TATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTT
* * * * *
67123086 CTCTTCGATCTGCTCTCCGCCGCTACGGAGACGCCAAATCTGTTATCTTCGATCTACTCTCTGCT
63 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* *
67123151 GCTACAGAGACGCCAAATCTGTTATCTTCAATCTGCTCTCCGCTGC
128 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * * *
67123197 TACAGAGATGCCAAATC-ATCTTCAATCTGCTCTTCGCCGCTAAAGAGACGTCAAATCTATTATC
1 TACAGAGACGCCAAATCTATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTTATC
* * *
67123261 TTCGATCTGCTCTCCGCAGCTACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCT
66 TTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
* *
67123326 ACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGC
131 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
67123369 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTTTGCCGCTACAGAGATGCCAAATC----
1 TACAGAGACGCCAAATC---TATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTT
* **
67123430 ATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTTTGCC
63 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
*
67123495 GCTACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCCGCCGC
128 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
67123537 TACAGAGACGCCAAATCTGTTATCTTC-ATCTACTC-TCTGCCGCTACAGAGACGCCAAATCTGT
1 TACAGAGACGCCAAATC---TATCTTCGATCTGCTCTTC-GCCGCTACAGAGACGCCAAATCTGT
* * *
67123600 TATCTTC-ATCTGCTCTCTGCCACTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTCGC
62 TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGC
** * *
67123664 CGCTACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGCCAC
127 CGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
67123711 TACA-AGACGCCAAATCTGTTATCTTCGATCTGCTCTTCGCCGCTACAGAGAGGCCAAATCTGTT
1 TACAGAGACGCCAAATC---TATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTT
* *
67123775 ATCTTTGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
63 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * **
67123840 -CTACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCTGCCAT
128 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
67123881 TACAGAGATGCCAAATCTATTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATC---TATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTT
* * * *
67123946 ATCTTCGACCTGCTCTCCACCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGTTCTCCGTC
63 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* *
67124011 GCTACAAAGACGCCAAATCTGTTATCTTCGATCTACTCTCCGCCGC
128 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
67124057 TACAGAAACGCCAAATCTGTTATCTTCGATCTGCTC-TCTACCGCTACAGAGACGCCAAATC
1 TACAGAGACGCCAAATC---TATCTTCGATCTGCTCTTC-GCCGCTACAGAGACGCCAAATC
67124118 ATCTTGGATT
Statistics
Matches: 827, Mismatches: 71, Indels: 46
0.88 0.08 0.05
Matches are distributed among these distances:
166 1 0.00
167 28 0.03
168 48 0.06
170 98 0.12
171 120 0.15
172 251 0.30
173 22 0.03
174 79 0.10
175 58 0.07
176 122 0.15
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (173 bp):
TACAGAGACGCCAAATCTATCTTCGATCTGCTCTTCGCCGCTACAGAGACGCCAAATCTGTTATC
TTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
Found at i:67123403 original size:216 final size:216
Alignment explanation
Indices: 67123021--67124117 Score: 1566
Period size: 216 Copynumber: 5.1 Consensus size: 216
67123011 CCCCGTCTAA
** *
67123021 TACAGAGACGCCAAATCCGTTATCTTCGATCTGCTCTTCGCCGCTACAGAGATGCCAAATCTGTT
1 TACAGAGACGCCAAATCTATTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTT
* * * * *
67123086 CTCTTCGATCTGCTCTCCGCCGCTACGGAGACGCCAAATCTGTTATCTTCGATCTACTCTCTGCT
66 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* *
67123151 GCTACAGAGACGCCAAATCTGTTATCTTCAATCTGCTCTCCGCTGCTACAGAGATGCCAAATCAT
131 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCAT
*
67123216 CTTCAATCTGCTCTTCGCCGC
196 CTTCGATCTGCTCTTCGCCGC
* * * *
67123237 TAAAGAGACGTCAAATCTATTATCTTCGATCTGCTCTCCGCAGCTACAGAGATGCCAAATCTGCT
1 TACAGAGACGCCAAATCTATTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTT
* *
67123302 ATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGTC
66 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* **
67123367 GCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTTTGCCGCTACAGAGATGCCAAATCAT
131 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCAT
*
67123432 CTTCGATCTGCTCTCCGCCGC
196 CTTCGATCTGCTCTTCGCCGC
* * **
67123453 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTTTGCCGCTACAGAGATGCCAAATC----
1 TACAGAGACGCCAAATCTATTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTT
* *
67123514 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTC-ATCTACTCTCTGCC
66 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * *
67123578 GCTACAGAGACGCCAAATCTGTTATCTTC-ATCTGCTCTCTGCCACTACAGAGACGCCAAATCTG
131 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATC--
67123642 TTATCTTCGATCTGCTCTTCGCCGC
194 --ATCTTCGATCTGCTCTTCGCCGC
* * * *
67123667 TACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGCCACTACA-AGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTATTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTT
* * *
67123731 ATCTTCGATCTGCTCTTCGCCGCTACAGAGAGGCCAAATCTGTTATCTTTGATCTGCTCTCCGCC
66 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
*
67123796 GCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC-CTACAGAGATGCCAAATCAT
131 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCAT
**
67123860 CTTCGATCTGCTC-TCTGCCAT
196 CTTCGATCTGCTCTTC-GCCGC
* * *
67123881 TACAGAGATGCCAAATCTATTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTATTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTT
* * * *
67123946 ATCTTCGACCTGCTCTCCACCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGTTCTCCGTC
66 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* * * *
67124011 GCTACAAAGACGCCAAATCTGTTATCTTCGATCTACTCTCCGCCGCTACAGAAACGCCAAATCTG
131 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATC--
*
67124076 TTATCTTCGATCTGCTC-TCTACCGC
194 --ATCTTCGATCTGCTCTTC-GCCGC
67124101 TACAGAGACGCCAAATC
1 TACAGAGACGCCAAATC
67124118 ATCTTGGATT
Statistics
Matches: 790, Mismatches: 74, Indels: 30
0.88 0.08 0.03
Matches are distributed among these distances:
210 30 0.04
211 39 0.05
212 49 0.06
213 13 0.02
214 126 0.16
215 115 0.15
216 265 0.34
217 47 0.06
218 57 0.07
219 13 0.02
220 36 0.05
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (216 bp):
TACAGAGACGCCAAATCTATTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTT
ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCAT
CTTCGATCTGCTCTTCGCCGC
Found at i:67124442 original size:61 final size:64
Alignment explanation
Indices: 67124324--67124446 Score: 191
Period size: 61 Copynumber: 2.0 Consensus size: 64
67124314 TCATGTATCC
67124324 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
* *
67124388 ATGCTTTATGTCAAATAATTAGGATG-T-T-A-TGAAATGAATCAAATGTTCCTAACTAAATG
1 ATGC-TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATG
67124447 AATGGTTATG
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
61 29 0.52
62 1 0.02
63 1 0.02
64 5 0.09
65 20 0.36
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.33
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:67131092 original size:49 final size:49
Alignment explanation
Indices: 67131021--67131325 Score: 501
Period size: 49 Copynumber: 6.3 Consensus size: 49
67131011 GTATGAGGTA
*
67131021 TATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
67131070 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
67131119 TATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
67131168 TATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
67131217 TATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
67131264 TATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
67131311 TATAAATGTGATAAG
1 TATATATGTGATAAG
67131326 TCCCGAAGGG
Statistics
Matches: 241, Mismatches: 14, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 55 0.23
48 5 0.02
49 181 0.75
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:67140465 original size:28 final size:27
Alignment explanation
Indices: 67140402--67140471 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
67140392 ATAGTGAGTC
*
67140402 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
67140429 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
67140457 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67140472 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:67148357 original size:27 final size:28
Alignment explanation
Indices: 67148327--67148396 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
67148317 ATAGTGTGTC
*
67148327 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
67148354 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
67148382 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67148397 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:67149993 original size:28 final size:28
Alignment explanation
Indices: 67149932--67150029 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
67149922 TCACAAATTG
** * *
67149932 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
67149961 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
67149989 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
67150017 GCACTAAGTGTGC
1 GCACTAAGTGTGC
67150030 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:67157672 original size:28 final size:28
Alignment explanation
Indices: 67157611--67157708 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
67157601 TCACAAATTG
** * *
67157611 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
67157640 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
67157668 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
67157696 GCACTAAGTGTGC
1 GCACTAAGTGTGC
67157709 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:67162000 original size:19 final size:19
Alignment explanation
Indices: 67161976--67162013 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
67161966 GAAATGAATA
*
67161976 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
67161995 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
67162014 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:67162289 original size:2 final size:2
Alignment explanation
Indices: 67162282--67162309 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
67162272 GTAGCTAAAT
67162282 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
67162310 CATAAACAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:67162940 original size:19 final size:20
Alignment explanation
Indices: 67162907--67162946 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
67162897 ATGTATATAT
67162907 ATAAAATAAAGAAAAT-AAA
1 ATAAAATAAAGAAAATGAAA
67162926 ATAAAATAACA-AAAATGAAA
1 ATAAAATAA-AGAAAATGAAA
67162946 A
1 A
67162947 ATGAACAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
ATAAAATAAAGAAAATGAAA
Found at i:67163906 original size:20 final size:20
Alignment explanation
Indices: 67163872--67163922 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
67163862 TAGTTAACTA
67163872 AAATTTATA-ATAAATATAT
1 AAATTTATATATAAATATAT
*
67163891 ATATTTATATATAAATATAT
1 AAATTTATATATAAATATAT
67163911 AAATTTAT-TATA
1 AAATTTATATATA
67163923 TTTGTAGTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
AAATTTATATATAAATATAT
Found at i:67173054 original size:27 final size:26
Alignment explanation
Indices: 67173020--67173130 Score: 132
Period size: 27 Copynumber: 4.1 Consensus size: 26
67173010 GCATGGCTGT
* *
67173020 CAGAACAGATAATGTGACAGAGTCAC
1 CAGAACAGATAATGTGGCAGAGCCAC
67173046 CAGATACAGATAATCGTGGCAGAGCCAC
1 CAGA-ACAGATAAT-GTGGCAGAGCCAC
*
67173074 CAGAACAGAAATATGTGGCAGAGCCAC
1 CAGAACAGATA-ATGTGGCAGAGCCAC
* * *
67173101 CAGATCAGATAATTGTAGCATAGCCAC
1 CAGAACAGATAA-TGTGGCAGAGCCAC
67173128 CAG
1 CAG
67173131 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 5 0.07
27 52 0.70
28 17 0.23
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.15
Consensus pattern (26 bp):
CAGAACAGATAATGTGGCAGAGCCAC
Found at i:67173112 original size:54 final size:54
Alignment explanation
Indices: 67173020--67173130 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 54
67173010 GCATGGCTGT
* * *
67173020 CAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCAC
1 CAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTAGCAGAGCCAC
* * *
67173074 CAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTAGCATAGCCAC
1 CAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTAGCAGAGCCAC
67173128 CAG
1 CAG
67173131 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.15
Consensus pattern (54 bp):
CAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTAGCAGAGCCAC
Found at i:67180885 original size:27 final size:26
Alignment explanation
Indices: 67180848--67180958 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
67180838 AGCATGGCTG
* *
67180848 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
67180874 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
67180902 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
67180929 CCA-ATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
67180955 CCAG
1 CCAG
67180959 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.01
26 26 0.35
27 30 0.41
28 17 0.23
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:67180954 original size:53 final size:54
Alignment explanation
Indices: 67180848--67180958 Score: 154
Period size: 53 Copynumber: 2.1 Consensus size: 54
67180838 AGCATGGCTG
* *
67180848 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
67180902 CCAGAACAGAAATATGTGGCAGAGCCACCA-AT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
67180955 CCAG
1 CCAG
67180959 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
53 23 0.45
54 13 0.25
55 15 0.29
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:67186990 original size:29 final size:29
Alignment explanation
Indices: 67186870--67187000 Score: 106
Period size: 29 Copynumber: 4.6 Consensus size: 29
67186860 CTACTCGATT
*
67186870 TCGCACACTTAGTGCCACGTA-ATTT-AAGC
1 TCGCACACTTAGTGCCA--TATATTTCCAGC
* ** *** *
67186899 CCGCACACACAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
** *
67186928 TCGCACACCCAGTGCCGTAT-TTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
*
67186956 TTGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
*
67186985 ACGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
67187001 GATCTCGTCA
Statistics
Matches: 81, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
27 2 0.02
28 24 0.30
29 55 0.68
ACGTcount: A:0.24, C:0.35, G:0.17, T:0.24
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATATTTCCAGC
Found at i:67203465 original size:93 final size:93
Alignment explanation
Indices: 67203337--67203507 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
67203327 GCCCCTAAGT
* *
67203337 GAACTCGGACTCAACTCAATGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67203402 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
67203430 GAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
67203494 ATGAGTTCGGATGC
65 ACGAGTTCGGATGC
67203508 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:67203502 original size:46 final size:46
Alignment explanation
Indices: 67203332--67203504 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
67203322 AATCCGCCCC
* * *
67203332 TAAGTGAACTCGGACTCAACTCAATGAGCTCAGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCA
* *
67203378 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
67203426 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
67203471 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67203505 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 12, Indels: 20
0.77 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 57 0.54
47 29 0.28
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:67208222 original size:15 final size:15
Alignment explanation
Indices: 67208202--67208230 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
67208192 ATTATGAAAG
67208202 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
67208217 ATATGTTTTGGATT
1 ATATGTTTTGGATT
67208231 GGAATTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:67208788 original size:43 final size:42
Alignment explanation
Indices: 67208727--67208865 Score: 165
Period size: 43 Copynumber: 3.3 Consensus size: 42
67208717 ATAGGATTTC
* * *
67208727 CGATATGTGTTCTCGTGTAAGACCACGTTTGGGACGTTGGCAT
1 CGATATGTGAT-TCGTGTAAGACCACGTCTGGGACATTGGCAT
* *
67208770 CGATATGTGATTACGTGTAAGACCATGTCTGGGACATTGACAT
1 CGATATGTGATT-CGTGTAAGACCACGTCTGGGACATTGGCAT
* * *
67208813 CG-TATTTGATTCGTATAAGACC-CTGTCTGGGACAATGGCAT
1 CGATATGTGATTCGTGTAAGACCAC-GTCTGGGACATTGGCAT
67208854 CGATATGTGATT
1 CGATATGTGATT
67208866 GTATGTAAGG
Statistics
Matches: 82, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
41 27 0.33
42 17 0.21
43 38 0.46
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (42 bp):
CGATATGTGATTCGTGTAAGACCACGTCTGGGACATTGGCAT
Found at i:67211584 original size:48 final size:48
Alignment explanation
Indices: 67211491--67211924 Score: 595
Period size: 48 Copynumber: 9.1 Consensus size: 48
67211481 TACATGAATC
* *
67211491 CACATA-A-CATCCCCGATGCCATGT-CCAAACATGGTCTTACACTGG
1 CACATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGG
* *
67211536 CACACATATCATCGCAGATGCCATGTCCCAGACATGGTCTTACACTGG
1 CACATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGG
* * * * ** *
67211584 CACACATATCATTGCAGATGCCATGTCCCAGACATGTTCTTATGCAGG
1 CACATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGG
* * *
67211632 CATACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACTGG
1 CACATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGG
* *
67211680 CACATATATCATCACCGATGCCATGTCCCAGACATGGTCTTACATTGG
1 CACATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGG
*
67211728 CACATATATCATCGCCGATGCCATGTCCCATACATGGTCTTACACTGG
1 CACATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGG
* * ** *
67211776 CACATATATCATCGTCGATGTCACATCCCAGACATGATCTTACACTGG
1 CACATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGG
* * **
67211824 CACGTATATCATCGCTGATGCCATGTCCTGGACATGGTCTTACACTGG
1 CACATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGG
* *
67211872 TACATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGG
1 CACATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGG
67211920 CACAT
1 CACAT
67211925 TTAGCACAGT
Statistics
Matches: 341, Mismatches: 45, Indels: 3
0.88 0.12 0.01
Matches are distributed among these distances:
45 5 0.01
46 1 0.00
47 15 0.04
48 320 0.94
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
CACATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGG
Found at i:67220322 original size:48 final size:49
Alignment explanation
Indices: 67220251--67220622 Score: 451
Period size: 48 Copynumber: 7.8 Consensus size: 49
67220241 TAAAGTACCA
* ** * *
67220251 ATGCCATGTCCCCGACATGGTCTTACATGAATC-CACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACATGAGGCACATATATCATCGCCG
* * * *
67220299 ATGCCATGTCCCAGACATGGTCTTACA-CAGGCACACATATCATTGTCG
1 ATGCCATGTCCCAGACATGGTCTTACATGAGGCACATATATCATCGCCG
* * *
67220347 ATGCCATGTCCTAGACATGGTCTTACA-CAGGCACATATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACATGAGGCACATATATCATCGCCG
*
67220395 ATGCCATGTCCCAGACATTGTCTTACACT--GGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACA-TGAGGCACATATATCATCGCCG
* * *
67220443 ATGCCATGTCCCAAACATGGTCTTACACT--GGTACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACA-TGAGGCACATATATCATCGCCG
* *
67220491 ATGCCATGCCCCAGACATGGTCTTACA-CAGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACATGAGGCACATATATCATCGCCG
* * *
67220539 ATGCCATGTCCTAGACATAGTCTTACACT--GGCACATATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACA-TGAGGCACATATATCATCGCCG
67220587 ATGCCATGTCCCAGACATGGTCTTACAT-AGGCACAT
1 ATGCCATGTCCCAGACATGGTCTTACATGAGGCACAT
67220623 TTAATACAGT
Statistics
Matches: 287, Mismatches: 29, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
47 3 0.01
48 284 0.99
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.25
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACATGAGGCACATATATCATCGCCG
Found at i:67220418 original size:96 final size:96
Alignment explanation
Indices: 67220251--67220622 Score: 521
Period size: 96 Copynumber: 3.9 Consensus size: 96
67220241 TAAAGTACCA
* * **
67220251 ATGCCATGTCCCCGACATGGTCTTACATGAATC-CACATATCATCACCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACA-CAGGCACACATATCATCACCGATGCCATGTCCCAGAC
* * *
67220315 ATGGTCTTACACAGGCACACATATCATTGTCG
65 ATGGTCTTACACAGGCACATATATCATCGCCG
* *
67220347 ATGCCATGTCCTAGACATGGTCTTACACAGGCACATATATCATCACCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCGATGCCATGTCCCAGACA
* *
67220412 TTGTCTTACACTGGCACATATATCATCGCCG
66 TGGTCTTACACAGGCACATATATCATCGCCG
* * * * *
67220443 ATGCCATGTCCCAAACATGGTCTTACACTGGTACACATATCATCGCCGATGCCATGCCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCGATGCCATGTCCCAGACA
67220508 TGGTCTTACACAGGCACATATATCATCGCCG
66 TGGTCTTACACAGGCACATATATCATCGCCG
* * * * **
67220539 ATGCCATGTCCTAGACATAGTCTTACACTGGCACATATATCATCGTCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCGATGCCATGTCCCAGACA
*
67220604 TGGTCTTACATAGGCACAT
66 TGGTCTTACACAGGCACAT
67220623 TTAATACAGT
Statistics
Matches: 247, Mismatches: 28, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
95 2 0.01
96 245 0.99
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.25
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCGATGCCATGTCCCAGACA
TGGTCTTACACAGGCACATATATCATCGCCG
Found at i:67220511 original size:144 final size:144
Alignment explanation
Indices: 67220251--67220621 Score: 557
Period size: 144 Copynumber: 2.6 Consensus size: 144
67220241 TAAAGTACCA
* * * * *
67220251 ATGCCATGTCCCCGACATGGTCTTACA-T-GAATCCACATATCATCACCGATGCCATGTCCCAGA
1 ATGCCATGTCCCAGACATAGTCTTACACTGGCA--CATATATCATCGCCGATGCCATGTCCCAGA
* * * *
67220314 CATGGTCTTACACAGGCACACATATCATTGTCGATGCCATGTCCTAGACATGGTCTTACACAGGC
64 CATGGTCTTACACAGGCACACATATCATCGCCGATGCCATGCCCCAGACATGGTCTTACACAGGC
67220379 ACATATATCATCACCG
129 ACATATATCATCACCG
* *
67220395 ATGCCATGTCCCAGACATTGTCTTACACTGGCACATATATCATCGCCGATGCCATGTCCCAAACA
1 ATGCCATGTCCCAGACATAGTCTTACACTGGCACATATATCATCGCCGATGCCATGTCCCAGACA
* *
67220460 TGGTCTTACACTGGTACACATATCATCGCCGATGCCATGCCCCAGACATGGTCTTACACAGGCAC
66 TGGTCTTACACAGGCACACATATCATCGCCGATGCCATGCCCCAGACATGGTCTTACACAGGCAC
*
67220525 ATATATCATCGCCG
131 ATATATCATCACCG
* *
67220539 ATGCCATGTCCTAGACATAGTCTTACACTGGCACATATATCATCGTCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATAGTCTTACACTGGCACATATATCATCGCCGATGCCATGTCCCAGACA
*
67220604 TGGTCTTACATAGGCACA
66 TGGTCTTACACAGGCACA
67220622 TTTAATACAG
Statistics
Matches: 205, Mismatches: 20, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
144 202 0.99
145 1 0.00
146 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.25
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATAGTCTTACACTGGCACATATATCATCGCCGATGCCATGTCCCAGACA
TGGTCTTACACAGGCACACATATCATCGCCGATGCCATGCCCCAGACATGGTCTTACACAGGCAC
ATATATCATCACCG
Found at i:67226076 original size:50 final size:48
Alignment explanation
Indices: 67226022--67226202 Score: 191
Period size: 50 Copynumber: 3.6 Consensus size: 48
67226012 CTGATATGCA
* * * *
67226022 TAGTAGCCTGCACTTAGTACTACACACATGACCTCACCATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CTAAACAT-TGATACACG
* * * *
67226072 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCATTGAATACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CTAA-ACATTG-ATACACG
* * * *
67226123 TAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTAAACA-T-TGATACACG
67226173 TAGTAGCCTGCACTTAGTACTACACACGTG
1 TAGTAGCCTGCACTTAGTACTACACACGTG
67226203 TACTCACAAT
Statistics
Matches: 109, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
49 2 0.02
50 69 0.63
51 38 0.35
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTAAACATTGATACACG
Found at i:67226178 original size:101 final size:101
Alignment explanation
Indices: 67226019--67226202 Score: 280
Period size: 101 Copynumber: 1.8 Consensus size: 101
67226009 TATCTGATAT
* * * *
67226019 GCATAGTAGCCTGCACTTAGTACTACACACATGACCTCACCATCTGATACATGTAGTAGCCTGCA
1 GCATAGTAGCCTGCACTTAGTACTACACACACGACCTCAACATATGATACACGTAGTAGCCTGCA
67226084 CTTAGTACTACACACGTGATCGAAGTCATTGAATAC
66 CTTAGTACTACACACGTGATCGAAGTCATTGAATAC
** * *
67226120 GCATAGTAGCCTGCACTTAGTACTACACATGCGA-CTTAACAGTATGGTACACGTAGTAGCCTGC
1 GCATAGTAGCCTGCACTTAGTACTACACACACGACCTCAACA-TATGATACACGTAGTAGCCTGC
67226184 ACTTAGTACTACACACGTG
65 ACTTAGTACTACACACGTG
67226203 TACTCACAAT
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 5 0.07
101 69 0.93
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (101 bp):
GCATAGTAGCCTGCACTTAGTACTACACACACGACCTCAACATATGATACACGTAGTAGCCTGCA
CTTAGTACTACACACGTGATCGAAGTCATTGAATAC
Found at i:67233472 original size:93 final size:93
Alignment explanation
Indices: 67233360--67233531 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67233350 GCCCATAAGT
* *
67233360 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67233425 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
67233453 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67233518 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
67233532 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67233527 original size:46 final size:46
Alignment explanation
Indices: 67233352--67233527 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
67233342 TGTAACCCGC
* * *
67233352 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
67233398 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
67233448 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
67233491 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67233528 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:67235525 original size:39 final size:39
Alignment explanation
Indices: 67235419--67235567 Score: 133
Period size: 39 Copynumber: 3.8 Consensus size: 39
67235409 ATCACGATTT
*
67235419 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
67235459 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCCTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTA
* * * **
67235498 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTC-A
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
67235537 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
67235568 TCATTCAATT
Statistics
Matches: 90, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 56 0.62
40 31 0.34
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:67243568 original size:80 final size:80
Alignment explanation
Indices: 67243484--67243632 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
67243474 TATGGTAACC
* * * *
67243484 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
67243548 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
67243564 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
67243629 CCGG
66 CCGG
67243633 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:67243574 original size:40 final size:38
Alignment explanation
Indices: 67243525--67243632 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
67243515 ATCACGATTT
*
67243525 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
67243565 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
67243605 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
67243633 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:67256357 original size:40 final size:40
Alignment explanation
Indices: 67256249--67256358 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
67256239 ATTGAATGAT
* * * * *
67256249 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
67256289 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
67256329 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
67256359 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:67256373 original size:40 final size:39
Alignment explanation
Indices: 67256249--67256398 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
67256239 ATTGAATGAT
* * * * * * *
67256249 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
67256289 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
67256329 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
67256369 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
67256399 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:67258688 original size:46 final size:46
Alignment explanation
Indices: 67258621--67258796 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
67258611 TATTTCGGCA
67258621 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
* * * *
67258667 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAAC---G
* * * *
67258712 CATCCGAGCTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
* * *
67258760 -CCCAAGCTCGTTGAGTTAAGTCCAAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCAAGTTCACTTATGG
67258797 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 16, Indels: 20
0.74 0.11 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 6 0.06
46 55 0.53
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
Found at i:67258776 original size:93 final size:93
Alignment explanation
Indices: 67258617--67258789 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
67258607 CAGATATTTC
* *
67258617 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTAAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
* *
67258682 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTAAGTCCAAGTTCGTGAGATGTAACTA
* * *
67258710 GGCATCCGAGCTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CCCAAGCTCGTTGA
1 GGCATCCGAACTCGTTAAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGA
67258774 GTTAAGTCCAAGTTCG
65 GTTAAGTCCAAGTTCG
67258790 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
92 4 0.06
93 68 0.94
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTAAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
TTAAGTCCAAGTTCGTGAGATGTAACTA
Found at i:67261348 original size:24 final size:24
Alignment explanation
Indices: 67261316--67261390 Score: 96
Period size: 24 Copynumber: 3.1 Consensus size: 24
67261306 TAAACAAGTG
*
67261316 ATTCTATAAGTTTCTTTGTGGCAT
1 ATTCTATAAGTTCCTTTGTGGCAT
*
67261340 ATTCTATAAGCTCCTTTGTGGCAT
1 ATTCTATAAGTTCCTTTGTGGCAT
* * * *
67261364 ATTCTGTAAGTGCCTTCGTGGCGT
1 ATTCTATAAGTTCCTTTGTGGCAT
67261388 ATT
1 ATT
67261391 TGAGGTTGCC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.19, C:0.17, G:0.20, T:0.44
Consensus pattern (24 bp):
ATTCTATAAGTTCCTTTGTGGCAT
Found at i:67263152 original size:46 final size:45
Alignment explanation
Indices: 67263099--67263313 Score: 188
Period size: 46 Copynumber: 4.6 Consensus size: 45
67263089 TGTGTGCTAG
*
67263099 TGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCAGCCACA-GATGAGAGCCAA
* *
67263145 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCCAA
1 TGTAAGACATGTCTGGGACATGCATCAGCCAC-AGATG-AGAGCCAA
* * * * * *
67263191 TGTAAGACATGCCTGGGACATGCATCGGCTAC-GA-GATGTGCTAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCACAGATGA-GAGCCAA
* * *
67263235 TGTAAGACATGTCTGGGACATGCATCGGTATG-GATATG-TGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGCATC---A-GCCACA-GATGAGAGCCAA
67263283 TGTAAGACCATGTCTGGGACATGGCATCAGC
1 TGTAAGA-CATGTCTGGGACAT-GCATCAGC
67263314 ACTATACCCT
Statistics
Matches: 140, Mismatches: 15, Indels: 27
0.77 0.08 0.15
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 30 0.21
46 69 0.49
47 4 0.03
48 13 0.09
49 17 0.12
50 5 0.04
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGAGCCAA
Found at i:67268191 original size:24 final size:24
Alignment explanation
Indices: 67268162--67268294 Score: 135
Period size: 24 Copynumber: 5.5 Consensus size: 24
67268152 TATCTCAAAT
*
67268162 GCACTATGTGTACAATTTATTA-A
1 GCACTATGTGTGCAATTTATTATA
67268185 TGCACTATGTGTGCAATTTATTATA
1 -GCACTATGTGTGCAATTTATTATA
* * *
67268210 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCAATTTATTATA
* ** *
67268234 GCACTATGTGTGCGATTTGCTATG
1 GCACTATGTGTGCAATTTATTATA
** *
67268258 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGC-AATTTATTATA
67268282 GCACTATGTGTGC
1 GCACTATGTGTGC
67268295 CACATTCGGT
Statistics
Matches: 96, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
24 91 0.95
25 5 0.05
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCAATTTATTATA
Found at i:67270809 original size:21 final size:22
Alignment explanation
Indices: 67270776--67270816 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
67270766 TTTCTTTATG
*
67270776 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
67270797 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
67270817 CAATACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:67272915 original size:27 final size:27
Alignment explanation
Indices: 67272877--67272954 Score: 156
Period size: 27 Copynumber: 2.9 Consensus size: 27
67272867 CTCATACATA
67272877 ACATAGAAATTACAATCCTTTGTCCTG
1 ACATAGAAATTACAATCCTTTGTCCTG
67272904 ACATAGAAATTACAATCCTTTGTCCTG
1 ACATAGAAATTACAATCCTTTGTCCTG
67272931 ACATAGAAATTACAATCCTTTGTC
1 ACATAGAAATTACAATCCTTTGTC
67272955 TTGATCCATA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33
Consensus pattern (27 bp):
ACATAGAAATTACAATCCTTTGTCCTG
Found at i:67281767 original size:52 final size:54
Alignment explanation
Indices: 67281695--67281801 Score: 148
Period size: 52 Copynumber: 2.0 Consensus size: 54
67281685 AGGTAGCTTT
*
67281695 ATGGTCTAGGGACACAGTCGTGTGGC-CTATCTCACACAGG-TTAGCTCTTGCAC
1 ATGGTCTAGGGACACAGTCGTGTGGCTC-ATCACACACAGGTTTAGCTCTTGCAC
* * *
67281748 ATGGT-TAGTGACATAGTCGTGTGGCTCATCACACACAGGTTTAGCTTTTGCAC
1 ATGGTCTAGGGACACAGTCGTGTGGCTCATCACACACAGGTTTAGCTCTTGCAC
67281801 A
1 A
67281802 CAGCCAGGGG
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
52 29 0.60
53 19 0.40
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.29
Consensus pattern (54 bp):
ATGGTCTAGGGACACAGTCGTGTGGCTCATCACACACAGGTTTAGCTCTTGCAC
Found at i:67284799 original size:22 final size:21
Alignment explanation
Indices: 67284774--67284838 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
67284764 AATAAAATAA
*
67284774 AATAAAACATATAAATCTAAAT
1 AATAAAA-ATATAAAACTAAAT
* *
67284796 AATAAAAAAATAAAAATAAA-
1 AATAAAAATATAAAACTAAAT
67284816 AATAAAAAAATATAAAACTAAAT
1 AAT--AAAAATATAAAACTAAAT
67284839 GAAGTCACTT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
20 3 0.09
21 10 0.29
22 22 0.63
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.22
Consensus pattern (21 bp):
AATAAAAATATAAAACTAAAT
Found at i:67284810 original size:6 final size:6
Alignment explanation
Indices: 67284767--67284823 Score: 55
Period size: 6 Copynumber: 9.7 Consensus size: 6
67284757 AGTGCATAAT
* * * *
67284767 AAAAT- AAAATA AAACATA TAAATC TAAATA ATAA-A AAAATA AAAATA
1 AAAATA AAAATA AAA-ATA AAAATA AAAATA AAAATA AAAATA AAAATA
67284814 AAAATA AAAA
1 AAAATA AAAA
67284824 AATATAAAAC
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
5 9 0.21
6 29 0.67
7 5 0.12
ACGTcount: A:0.77, C:0.04, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:67285290 original size:11 final size:11
Alignment explanation
Indices: 67285274--67285309 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
67285264 AAAAAAAATC
67285274 TTTTTTCCAAT
1 TTTTTTCCAAT
67285285 TTTTTTCC--T
1 TTTTTTCCAAT
67285294 TTTTTTCCAAT
1 TTTTTTCCAAT
67285305 TTTTT
1 TTTTT
67285310 CATTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 9 0.39
11 14 0.61
ACGTcount: A:0.11, C:0.17, G:0.00, T:0.72
Consensus pattern (11 bp):
TTTTTTCCAAT
Found at i:67285296 original size:9 final size:10
Alignment explanation
Indices: 67285274--67285317 Score: 56
Period size: 9 Copynumber: 4.5 Consensus size: 10
67285264 AAAAAAAATC
67285274 TTTTTTCCAAT
1 TTTTTTCC-AT
67285285 TTTTTTCC-T
1 TTTTTTCCAT
*
67285294 TTTTTTCCAA
1 TTTTTTCCAT
67285304 TTTTTT-CAT
1 TTTTTTCCAT
67285313 TTTTT
1 TTTTT
67285318 AAGTAATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 16 0.53
10 6 0.20
11 8 0.27
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.73
Consensus pattern (10 bp):
TTTTTTCCAT
Found at i:67285310 original size:19 final size:20
Alignment explanation
Indices: 67285274--67285317 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
67285264 AAAAAAAATC
*
67285274 TTTTTTCCAATTTTTTTCCT
1 TTTTTTCCAATTTTTTTCAT
67285294 TTTTTTCCAA-TTTTTTCAT
1 TTTTTTCCAATTTTTTTCAT
67285313 TTTTT
1 TTTTT
67285318 AAGTAATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTTTCCAATTTTTTTCAT
Found at i:67288787 original size:12 final size:12
Alignment explanation
Indices: 67288770--67288797 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
67288760 AGCAAAATAG
67288770 GTTTTTAGTGGC
1 GTTTTTAGTGGC
67288782 GTTTTTAGTGGC
1 GTTTTTAGTGGC
67288794 GTTT
1 GTTT
67288798 GGATCAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.07, G:0.32, T:0.54
Consensus pattern (12 bp):
GTTTTTAGTGGC
Found at i:67288851 original size:40 final size:41
Alignment explanation
Indices: 67288805--67289058 Score: 264
Period size: 40 Copynumber: 6.3 Consensus size: 41
67288795 TTTGGATCAA
* * *
67288805 AAACGCCGCAAAAGGTAAAGCATTAGCGGCGTTTTT-GCAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCGGCATTTTTCTCAT
* * *
67288845 AAACGCCGCAAAAGGTAAAGAAATAGCAGCATTTTT-GCAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCGGCATTTTTCTCAT
** * * **
67288885 AAACATCGCAAAAGGTAAAGTAATAACGGTGTTTTTCTCAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCGGCATTTTTCTCAT
* *** * *
67288926 AAACACTAAAAAAGGTAAAG-AATAGTGGCGTTTTTCTCAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCGGCATTTTTCTCAT
* * *
67288966 AAATGCCACAAAAGGTAAAGCAATAGCGGCATTTTT-TTAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCGGCATTTTTCTCAT
* * *
67289006 AAACGCCGCTAAAGGTAAAGCAATATCGGCATTTTTCCCAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCGGCATTTTTCTCAT
67289047 AAACGCCGCAAA
1 AAACGCCGCAAA
67289059 TGTTTTTTTT
Statistics
Matches: 178, Mismatches: 33, Indels: 5
0.82 0.15 0.02
Matches are distributed among these distances:
40 133 0.75
41 45 0.25
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (41 bp):
AAACGCCGCAAAAGGTAAAGCAATAGCGGCATTTTTCTCAT
Found at i:67289001 original size:81 final size:80
Alignment explanation
Indices: 67288813--67289050 Score: 199
Period size: 81 Copynumber: 3.0 Consensus size: 80
67288803 AAAAACGCCG
* * * **
67288813 CAAAAGGTAAAGCATTAGCGGCGTTTTTGCATAAACGCCGCAAAAGGTAAAGAAATAGCAGCATT
1 CAAAAGGTAAAGCAATAGCGGCGTTTTTTCATAAACACCAAAAAAGGTAAAGAAATAGCAGCATT
* *
67288878 TTTGCATAAACATCG
66 TTTGCATAAACACCA
* * * * ** *
67288893 CAAAAGGTAAAGTAATAACGGTGTTTTTCTCATAAACACTAAAAAAGGTAAAG-AATAGTGGCGT
1 CAAAAGGTAAAGCAATAGCGGCGTTTTT-TCATAAACACCAAAAAAGGTAAAGAAATAGCAGCAT
* **
67288957 TTTTCTCATAAATGCCA
65 TTTT-GCATAAACACCA
* * * *** * * *
67288974 CAAAAGGTAAAGCAATAGCGGCATTTTTTTATAAACGCCGCTAAAGGTAAAGCAATATCGGCATT
1 CAAAAGGTAAAGCAATAGCGGCGTTTTTTCATAAACACCAAAAAAGGTAAAGAAATAGCAGCATT
*
67289039 TTTCCCATAAAC
66 TTT-GCATAAAC
67289051 GCCGCAAATG
Statistics
Matches: 123, Mismatches: 32, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
80 54 0.44
81 69 0.56
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (80 bp):
CAAAAGGTAAAGCAATAGCGGCGTTTTTTCATAAACACCAAAAAAGGTAAAGAAATAGCAGCATT
TTTGCATAAACACCA
Found at i:67289041 original size:121 final size:121
Alignment explanation
Indices: 67288814--67289050 Score: 305
Period size: 121 Copynumber: 2.0 Consensus size: 121
67288804 AAAACGCCGC
* *
67288814 AAAAGGTAAAGCATTAGCGGCGTTTTTGCATAAACGCCGCAAAAGGTAAAGAAATAGCAGCATTT
1 AAAAGGTAAAGCAATAGCGGCGTTTTTGCATAAACGCCACAAAAGGTAAAGAAATAGCAGCATTT
* * ** *
67288879 TTGCATAAACATCGCAAAAGGTAAAGTAATAACGGTGTTTTTCTCATAAACACTAA
66 TTGCATAAACACCGCAAAAGGTAAAGCAATAACGGCATTTTTCCCATAAACACTAA
* * * * *
67288935 AAAAGGTAAAG-AATAGTGGCGTTTTTCTCATAAATGCCACAAAAGGTAAAGCAATAGCGGCATT
1 AAAAGGTAAAGCAATAGCGGCGTTTTT-GCATAAACGCCACAAAAGGTAAAGAAATAGCAGCATT
** * * *
67288999 TTTTTATAAACGCCGCTAAAGGTAAAGCAATATCGGCATTTTTCCCATAAAC
65 TTTGCATAAACACCGCAAAAGGTAAAGCAATAACGGCATTTTTCCCATAAAC
67289051 GCCGCAAATG
Statistics
Matches: 98, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
120 13 0.13
121 85 0.87
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (121 bp):
AAAAGGTAAAGCAATAGCGGCGTTTTTGCATAAACGCCACAAAAGGTAAAGAAATAGCAGCATTT
TTGCATAAACACCGCAAAAGGTAAAGCAATAACGGCATTTTTCCCATAAACACTAA
Found at i:67291275 original size:30 final size:30
Alignment explanation
Indices: 67291239--67291324 Score: 77
Period size: 29 Copynumber: 2.8 Consensus size: 30
67291229 TAGTGATTTG
*
67291239 TGAAAATTGAATTAAATTTAAATTTTATGTA
1 TGAAAATT-AATTAAATTTAAATTTCATGTA
* *
67291270 T-AAAATT-ATACAAAATTAAATTTCATGTA
1 TGAAAATTAAT-TAAATTTAAATTTCATGTA
* *
67291299 TGAAAATACACATTAAATTAAAATTT
1 TGAAAAT-TA-ATTAAATTTAAATTT
67291325 ATATTTAATT
Statistics
Matches: 43, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
28 2 0.05
29 17 0.40
30 11 0.26
31 1 0.02
32 10 0.23
33 2 0.05
ACGTcount: A:0.50, C:0.05, G:0.06, T:0.40
Consensus pattern (30 bp):
TGAAAATTAATTAAATTTAAATTTCATGTA
Found at i:67295877 original size:39 final size:39
Alignment explanation
Indices: 67295823--67296011 Score: 301
Period size: 39 Copynumber: 4.9 Consensus size: 39
67295813 AATGTTCGAG
*
67295823 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTT
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
67295862 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
67295901 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
67295940 TGATA-CC-GGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
67295977 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
67296012 GGTTACCATA
Statistics
Matches: 140, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
37 33 0.24
38 4 0.03
39 86 0.61
40 17 0.12
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:67295920 original size:78 final size:76
Alignment explanation
Indices: 67295823--67296011 Score: 306
Period size: 76 Copynumber: 2.4 Consensus size: 76
67295813 AATGTTCGAG
*
67295823 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTTTGATACCCGGGCTAAGCCCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATA-CC-GGCTAAGCCCGAAGGCA
67295888 ATTGTGCGAGCTA
64 ATTGTGCGAGCTA
67295901 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGCTAAGCCCGAAGGCAAT
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGCTAAGCCCGAAGGCAAT
* *
67295966 TGTGCGAGTTG
66 TGTGCGAGCTA
* *
67295977 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
67296012 GGTTACCATA
Statistics
Matches: 105, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
76 43 0.41
77 19 0.18
78 43 0.41
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (76 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGCTAAGCCCGAAGGCAAT
TGTGCGAGCTA
Done.