Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 221 of 325
Found at i:68793828 original size:42 final size:43
Alignment explanation
Indices: 68793741--68793886 Score: 124
Period size: 44 Copynumber: 3.4 Consensus size: 43
68793731 GCCGACGTTT
* *
68793741 CAGACGTGGTCTTACATC---ATCAAATATCGATGCCACTATCT
1 CAGACGTGGTCTTACA-CGAAATCAAATATCGATGCCAATATCC
*
68793782 CAGACAG-GGTCTTACACGAAATCAAATAT-GATGCCAATGTCC
1 CAGAC-GTGGTCTTACACGAAATCAAATATCGATGCCAATATCC
* * * **
68793824 CAGACGTGGTCTTACATGTAACTCATAA-GTCGATGCCAACGTCC
1 CAGACGTGGTCTTACACG-AAATCA-AATATCGATGCCAATATCC
* *
68793868 CAAACGTGATCTTACACGA
1 CAGACGTGGTCTTACACGA
68793887 TAACACATAT
Statistics
Matches: 87, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
40 1 0.01
41 15 0.17
42 26 0.30
43 16 0.18
44 29 0.33
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
CAGACGTGGTCTTACACGAAATCAAATATCGATGCCAATATCC
Found at i:68799729 original size:40 final size:40
Alignment explanation
Indices: 68799602--68799731 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
68799592 ATGCTGGAAA
* *
68799602 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
68799642 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
68799682 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
68799722 TTATATCCGG
1 TTATATCCGG
68799732 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:68810913 original size:31 final size:31
Alignment explanation
Indices: 68810876--68810939 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
68810866 TTAACATCAA
68810876 ATATAATCTAAACTAACAATTTTCATAATTT
1 ATATAATCTAAACTAACAATTTTCATAATTT
*
68810907 ATATAATCTAAACTAACTATTTTCATAATTT
1 ATATAATCTAAACTAACAATTTTCATAATTT
68810938 AT
1 AT
68810940 CATTATCAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (31 bp):
ATATAATCTAAACTAACAATTTTCATAATTT
Found at i:68818614 original size:14 final size:14
Alignment explanation
Indices: 68818595--68818625 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
68818585 TTAGATATAT
68818595 TTATAAAATTATTA
1 TTATAAAATTATTA
*
68818609 TTATAATATTATTA
1 TTATAAAATTATTA
68818623 TTA
1 TTA
68818626 GATAGGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTATAAAATTATTA
Found at i:68819584 original size:5 final size:5
Alignment explanation
Indices: 68819566--68819597 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
68819556 GGATTCAGTT
68819566 TTTTC TTCTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC T
68819598 CTTCATCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:68819594 original size:15 final size:16
Alignment explanation
Indices: 68819566--68819621 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 16
68819556 GGATTCAGTT
68819566 TTTTCTTCTTCTTTTC
1 TTTTCTTCTTCTTTTC
68819582 TTTTCTT-TTCTTTTC
1 TTTTCTTCTTCTTTTC
* * *
68819597 TCTTCATCTAC-TTTC
1 TTTTCTTCTTCTTTTC
*
68819612 TCTTCTTCTT
1 TTTTCTTCTT
68819622 TTCCCCATAG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
15 25 0.74
16 9 0.26
ACGTcount: A:0.04, C:0.27, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTCTTCTTCTTTTC
Found at i:68823297 original size:25 final size:27
Alignment explanation
Indices: 68823268--68823329 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 27
68823258 TTTTACTGTA
68823268 TTTATTATTACG-GATATTT-T-AAATT
1 TTTATTATTA-GAGATATTTATAAAATT
* *
68823293 TTTATGATTAGATATATTTATAAAATT
1 TTTATTATTAGAGATATTTATAAAATT
*
68823320 ATTATTATTA
1 TTTATTATTA
68823330 TTATAATTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
24 1 0.03
25 15 0.50
26 1 0.03
27 13 0.43
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (27 bp):
TTTATTATTAGAGATATTTATAAAATT
Found at i:68823331 original size:9 final size:9
Alignment explanation
Indices: 68823316--68823347 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
68823306 ATATTTATAA
68823316 AATTATTAT
1 AATTATTAT
*
68823325 TATTATTAT
1 AATTATTAT
68823334 AATTATTAT
1 AATTATTAT
68823343 AATTA
1 AATTA
68823348 GATAGGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
AATTATTAT
Found at i:68825493 original size:28 final size:27
Alignment explanation
Indices: 68825426--68825493 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
68825416 ATAGTGAGTC
*
68825426 CGCACACTCAGTGCTATATAATCAACA
1 CGCACACTTAGTGCTATATAATCAACA
* *
68825453 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACA
68825481 CGCACACTTAGTG
1 CGCACACTTAGTG
68825494 TTGTACAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACA
Found at i:68836218 original size:45 final size:46
Alignment explanation
Indices: 68836055--68836229 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
68836045 TGGTTGAGCA
*
68836055 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
68836101 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
68836146 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
68836194 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68836230 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 37 0.33
46 29 0.26
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:68843659 original size:46 final size:46
Alignment explanation
Indices: 68843609--68843784 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
68843599 TGGTTGAGCA
68843609 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68843655 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
68843700 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68843748 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68843785 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68843765 original size:93 final size:93
Alignment explanation
Indices: 68843606--68843777 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68843596 GGATGGTTGA
* *
68843606 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
68843671 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
68843699 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
68843764 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
68843778 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68847130 original size:25 final size:25
Alignment explanation
Indices: 68847088--68847136 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
68847078 CTTTATTATT
* *
68847088 ATCATTATGAAGAATTATGTGATTA
1 ATCATTATCAAGAATTATATGATTA
* *
68847113 ATCATTATCATGAGTTATATGATT
1 ATCATTATCAAGAATTATATGATT
68847137 GGTCCTCTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (25 bp):
ATCATTATCAAGAATTATATGATTA
Found at i:68848906 original size:36 final size:36
Alignment explanation
Indices: 68848866--68848938 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 36
68848856 TTAATAAGTC
* *
68848866 TAATTTAAAGA-GAAACAAATGATAACATTATTTAGA
1 TAATTTAAAGAGGAAA-AAATGATAACATCATTCAGA
* *
68848902 TAATTTCAAGAGGAAAAAATTATAACATCATTCAGA
1 TAATTTAAAGAGGAAAAAATGATAACATCATTCAGA
68848938 T
1 T
68848939 CCCGTACTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 28 0.88
37 4 0.12
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.30
Consensus pattern (36 bp):
TAATTTAAAGAGGAAAAAATGATAACATCATTCAGA
Found at i:68853686 original size:49 final size:49
Alignment explanation
Indices: 68853610--68853796 Score: 239
Period size: 49 Copynumber: 3.8 Consensus size: 49
68853600 TAGCCAAAGC
* * *
68853610 TATCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * *
68853659 TATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACC-AAT
* * * *
68853709 CATCTGATACACGTAGTAGCTTGCACTTAGTACTACACATACGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * *
68853758 TATCCGGTACACATAGTAGCGTGCACTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
68853797 CGTGACCTCA
Statistics
Matches: 117, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
49 76 0.65
50 41 0.35
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:68853783 original size:99 final size:99
Alignment explanation
Indices: 68853623--68853804 Score: 301
Period size: 99 Copynumber: 1.8 Consensus size: 99
68853613 CTGGTACGCA
* * **
68853623 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCTGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTACACTTAGTACTACACATACGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
68853688 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAACCATCTGATACACG
* * *
68853722 TAGTAGCTTGCACTTAGTACTACACATACGACCAATTATCCGGTACACATAGTAGCGTGCACTTA
1 TAGTAGCCTACACTTAGTACTACACATACGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
68853787 GTACTACACACGTGACCT
66 GTACTACACACGTGACCT
68853805 CACAATAGAT
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
99 76 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTACACTTAGTACTACACATACGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACCATCTGATACACG
Found at i:68857028 original size:42 final size:44
Alignment explanation
Indices: 68856957--68857060 Score: 117
Period size: 42 Copynumber: 2.4 Consensus size: 44
68856947 CATCGACTTA
*
68856957 TGATTTACGTGTAAGACCATATCTAGGACA-TCGGCATC-ATATT
1 TGATTTACGTGTAAAACCATATCTAGGACAGT-GGCATCAATATT
* * *
68857000 TGATTT-CGTGTAAAACCCTGTCTGGGACAGTGGCATCAATATT
1 TGATTTACGTGTAAAACCATATCTAGGACAGTGGCATCAATATT
* *
68857043 TGA-TTACATGTAAGACCA
1 TGATTTACGTGTAAAACCA
68857061 CGTCTAGAAC
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
42 27 0.53
43 24 0.47
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (44 bp):
TGATTTACGTGTAAAACCATATCTAGGACAGTGGCATCAATATT
Found at i:68857290 original size:29 final size:29
Alignment explanation
Indices: 68857254--68857313 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
68857244 TGTTATAAGT
68857254 ATGAGAAAATATGTTATATGTGTAAATGA
1 ATGAGAAAATATGTTATATGTGTAAATGA
68857283 ATGAGAAAATATGTTATATGTGTAAATGA
1 ATGAGAAAATATGTTATATGTGTAAATGA
68857312 AT
1 AT
68857314 TGGGAATATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.45, C:0.00, G:0.20, T:0.35
Consensus pattern (29 bp):
ATGAGAAAATATGTTATATGTGTAAATGA
Found at i:68861363 original size:25 final size:25
Alignment explanation
Indices: 68861310--68861356 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68861300 CCAATATTGA
* *
68861310 TATA-GTGATGCAACAATGAGGATG
1 TATAGGTGATACAACAAGGAGGATG
68861334 TATAGGTGATACAACAAGGAGGA
1 TATAGGTGATACAACAAGGAGGA
68861357 GCTATAGAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.40, C:0.09, G:0.30, T:0.21
Consensus pattern (25 bp):
TATAGGTGATACAACAAGGAGGATG
Found at i:68866311 original size:25 final size:23
Alignment explanation
Indices: 68866255--68866315 Score: 63
Period size: 25 Copynumber: 2.6 Consensus size: 23
68866245 TTAACAACAC
*
68866255 TTTCAAACTATTAACCATTTTTA
1 TTTCAAATTATTAACCATTTTTA
68866278 --TCAACAATTATTAACTCATTATTTA
1 TTTC-A-AATTATTAAC-CATT-TTTA
68866303 TTTCAAATTATTA
1 TTTCAAATTATTA
68866316 GCAATGGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 10
0.74 0.02 0.24
Matches are distributed among these distances:
21 2 0.06
22 1 0.03
23 9 0.29
24 4 0.13
25 12 0.39
26 1 0.03
27 2 0.06
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.48
Consensus pattern (23 bp):
TTTCAAATTATTAACCATTTTTA
Found at i:68867537 original size:21 final size:19
Alignment explanation
Indices: 68867522--68867583 Score: 72
Period size: 19 Copynumber: 3.2 Consensus size: 19
68867512 CAAATAATTA
68867522 TAAAAAATATAAAAATATT
1 TAAAAAATATAAAAATATT
*
68867541 TAAAAAATATAAAGAAT-TA
1 TAAAAAATATAAA-AATATT
**
68867560 TAAGAAGTTATAAAAATATT
1 TAA-AAAATATAAAAATATT
68867580 TAAA
1 TAAA
68867584 TTATTAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
19 21 0.58
20 15 0.42
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.31
Consensus pattern (19 bp):
TAAAAAATATAAAAATATT
Found at i:68867544 original size:10 final size:9
Alignment explanation
Indices: 68867520--68867553 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
68867510 TTCAAATAAT
68867520 TATAAAAAA
1 TATAAAAAA
68867529 TATAAAAATA
1 TATAAAAA-A
*
68867539 TTTAAAAAA
1 TATAAAAAA
68867548 TATAAA
1 TATAAA
68867554 GAATTATAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (9 bp):
TATAAAAAA
Found at i:68867561 original size:10 final size:9
Alignment explanation
Indices: 68867517--68867604 Score: 70
Period size: 10 Copynumber: 9.3 Consensus size: 9
68867507 TTTTTCAAAT
68867517 AATTATAAA
1 AATTATAAA
*
68867526 AAATATAAA
1 AATTATAAA
*
68867535 AATATTTAAA
1 AAT-TATAAA
*
68867545 AAATATAAA
1 AATTATAAA
68867554 GAATTATAAGA
1 -AATTATAA-A
*
68867565 AGTTATAAA
1 AATTATAAA
**
68867574 AA-TATTTA
1 AATTATAAA
68867582 AATTATTAAA
1 AATTA-TAAA
68867592 AATTCATAAA
1 AATT-ATAAA
68867602 AAT
1 AAT
68867605 AAAAATAATA
Statistics
Matches: 61, Mismatches: 12, Indels: 11
0.73 0.14 0.13
Matches are distributed among these distances:
8 6 0.10
9 19 0.31
10 34 0.56
11 2 0.03
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.33
Consensus pattern (9 bp):
AATTATAAA
Found at i:68870747 original size:4 final size:4
Alignment explanation
Indices: 68870734--68870771 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
68870724 AATTAAACTC
68870734 TTTA -TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
68870772 CTTGGTTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.09
4 30 0.91
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:68876856 original size:71 final size:71
Alignment explanation
Indices: 68876776--68876921 Score: 292
Period size: 71 Copynumber: 2.1 Consensus size: 71
68876766 GGTTTTTTAT
68876776 AAATATGGATTGGTTTGAATAAAATTTTAAAAATAATATTAAAGTAATATTAAAAAATTGATTAA
1 AAATATGGATTGGTTTGAATAAAATTTTAAAAATAATATTAAAGTAATATTAAAAAATTGATTAA
68876841 TTATAA
66 TTATAA
68876847 AAATATGGATTGGTTTGAATAAAATTTTAAAAATAATATTAAAGTAATATTAAAAAATTGATTAA
1 AAATATGGATTGGTTTGAATAAAATTTTAAAAATAATATTAAAGTAATATTAAAAAATTGATTAA
68876912 TTATAA
66 TTATAA
68876918 AAAT
1 AAAT
68876922 GAGTTGGGGG
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 75 1.00
ACGTcount: A:0.53, C:0.00, G:0.10, T:0.38
Consensus pattern (71 bp):
AAATATGGATTGGTTTGAATAAAATTTTAAAAATAATATTAAAGTAATATTAAAAAATTGATTAA
TTATAA
Found at i:68878235 original size:5 final size:5
Alignment explanation
Indices: 68878218--68878277 Score: 54
Period size: 5 Copynumber: 12.4 Consensus size: 5
68878208 TTTCAATTAT
* * * *
68878218 TATAA TAATAA TATAA TATAA TATAA TA-GA TATAC T-TAT TATTA T-TAA
1 TATAA T-ATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
68878266 TATAA TATAA TA
1 TATAA TATAA TA
68878278 GATATACTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
4 9 0.20
5 30 0.68
6 5 0.11
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (5 bp):
TATAA
Found at i:68878272 original size:32 final size:33
Alignment explanation
Indices: 68878231--68878294 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 33
68878221 AATAATAATA
68878231 TAATATAATATAATAGATATACTTAT-TATTAT
1 TAATATAATATAATAGATATACTTATATATTAT
68878263 TAATATAATATAATAGATATACTTATATATTA
1 TAATATAATATAATAGATATACTTATATATTA
68878295 AGTATTTCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 26 0.84
33 5 0.16
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (33 bp):
TAATATAATATAATAGATATACTTATATATTAT
Found at i:68879344 original size:28 final size:29
Alignment explanation
Indices: 68879312--68879371 Score: 88
Period size: 28 Copynumber: 2.1 Consensus size: 29
68879302 CTTATCTTCG
*
68879312 TAATTAATTTATTTCTTAAT-TTA-TTTTA
1 TAATTAATTAATTT-TTAATATTATTTTTA
68879340 TAATTAATTAATTTTTAATATTATTTTTA
1 TAATTAATTAATTTTTAATATTATTTTTA
68879369 TAA
1 TAA
68879372 AAAAACAGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 5 0.17
28 16 0.55
29 8 0.28
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (29 bp):
TAATTAATTAATTTTTAATATTATTTTTA
Found at i:68879529 original size:19 final size:18
Alignment explanation
Indices: 68879503--68879567 Score: 62
Period size: 19 Copynumber: 3.6 Consensus size: 18
68879493 GTTGGAATTT
68879503 TTTTTAAAAAAAATTGAA
1 TTTTTAAAAAAAATTGAA
*
68879521 TTATTT--AAAAAATTAAA
1 TT-TTTAAAAAAAATTGAA
* *
68879538 TTTTTTTAAAAGAATTGAA
1 -TTTTTAAAAAAAATTGAA
68879557 TTTTTCAAAAA
1 TTTTT-AAAAA
68879568 TATAATATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
17 13 0.34
18 9 0.24
19 16 0.42
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.43
Consensus pattern (18 bp):
TTTTTAAAAAAAATTGAA
Found at i:68879532 original size:17 final size:16
Alignment explanation
Indices: 68879510--68879568 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 16
68879500 TTTTTTTTAA
68879510 AAAAAATTGAATTATTT
1 AAAAAATTGAATT-TTT
*
68879527 AAAAAATTAAATTTTTTT
1 AAAAAATTGAA--TTTTT
68879545 AAAAGAATTGAATTTTT
1 AAAA-AATTGAATTTTT
*
68879562 CAAAAAT
1 AAAAAAT
68879569 ATAATATTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
16 3 0.08
17 18 0.50
18 7 0.19
19 8 0.22
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.41
Consensus pattern (16 bp):
AAAAAATTGAATTTTT
Found at i:68880334 original size:61 final size:61
Alignment explanation
Indices: 68880251--68880396 Score: 154
Period size: 61 Copynumber: 2.4 Consensus size: 61
68880241 ACATGTTATA
* * * **
68880251 TCAATTT-GATTCTAAATATAAAATA-TTCAACAATTTTAGCCCTCAATGTTTACAAAACTTG
1 TCAATTTAG-TTCTAATTCTAAAA-AGTTCAACAAATTTAGCCCTCAAAATTTACAAAACTTG
* * * * *
68880312 TCATTTTAGTT-TGAATTCTAAAAAGTTTAATAAATTTAGTCCTCAAAATTTACAAAATTTG
1 TCAATTTAGTTCT-AATTCTAAAAAGTTCAACAAATTTAGCCCTCAAAATTTACAAAACTTG
68880373 TCAATTTAGTTCTAATTCTAAAAA
1 TCAATTTAGTTCTAATTCTAAAAA
68880397 AAAATTAATA
Statistics
Matches: 70, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
60 2 0.03
61 66 0.94
62 2 0.03
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (61 bp):
TCAATTTAGTTCTAATTCTAAAAAGTTCAACAAATTTAGCCCTCAAAATTTACAAAACTTG
Found at i:68883551 original size:189 final size:188
Alignment explanation
Indices: 68883232--68883598 Score: 583
Period size: 189 Copynumber: 1.9 Consensus size: 188
68883222 TTGAGCTACC
* * * * * *
68883232 GGAGAGAAGGTTTCTTCTAAATCAACACCATATTGTTTTGCATAACCTTTCGTCACAAGTCTAGC
1 GGAGAGAAGGTTTCTTCAAAATCAACACCATATTGCTGTGCATAACCTTTCGCCACAAGACGAGC
* *
68883297 TTGTGCTTTTGGATGCTTCCATCTGCACCAAATTTTTTCTCGAACACCCACTTTAAACCAATTGC
66 TTGTGCTTTTGGATGCTTCCATCTGCACCAAATTTTGTCTCGAACACCCACTTCAAACCAATTGC
*
68883362 A-TTTTTATCTTCTAGTAAGTCGACCATCTCCCAAGTTCCATTCTTTTTTATGGAAACT
131 ATTTTTTATCTTCTAGCAAGTCGACCATCTCCCAAGTTCCATT-TTTTTTATGGAAACT
*
68883420 GGAGAGAAGGTTTCTTCAAAATCAACACCATATTGCTGTGCATAACCTTTTGCCACAAGACGAGC
1 GGAGAGAAGGTTTCTTCAAAATCAACACCATATTGCTGTGCATAACCTTTCGCCACAAGACGAGC
* *
68883485 TTTGTGCTTTTGGATGCTTCTATCTGCACCAAATTTTGTCTTGAACACCCACTTCAAACCAATTG
66 -TTGTGCTTTTGGATGCTTCCATCTGCACCAAATTTTGTCTCGAACACCCACTTCAAACCAATTG
* *
68883550 CATTTTTTATCTTCTGGCAAGTCGACCATCTCCTAAGTTCCATTTTTTT
130 CATTTTTTATCTTCTAGCAAGTCGACCATCTCCCAAGTTCCATTTTTTT
68883599 CGATGGATTC
Statistics
Matches: 163, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
188 58 0.36
189 67 0.41
190 38 0.23
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (188 bp):
GGAGAGAAGGTTTCTTCAAAATCAACACCATATTGCTGTGCATAACCTTTCGCCACAAGACGAGC
TTGTGCTTTTGGATGCTTCCATCTGCACCAAATTTTGTCTCGAACACCCACTTCAAACCAATTGC
ATTTTTTATCTTCTAGCAAGTCGACCATCTCCCAAGTTCCATTTTTTTTATGGAAACT
Found at i:68899100 original size:11 final size:11
Alignment explanation
Indices: 68899084--68899111 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
68899074 CTTCATCTTG
68899084 TTTGATTAATA
1 TTTGATTAATA
68899095 TTTGATTAATA
1 TTTGATTAATA
68899106 TTTGAT
1 TTTGAT
68899112 AAGATGTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (11 bp):
TTTGATTAATA
Found at i:68905111 original size:41 final size:41
Alignment explanation
Indices: 68905064--68905147 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
68905054 TGAATGCTTG
68905064 AGTAATCAAATGTGCCATGTTGCATGCTATGATGTGAGGGC
1 AGTAATCAAATGTGCCATGTTGCATGCTATGATGTGAGGGC
68905105 AGTAATCAAATGTGCCATGTTGCATGCTATGATGTGAGGGC
1 AGTAATCAAATGTGCCATGTTGCATGCTATGATGTGAGGGC
68905146 AG
1 AG
68905148 GTATGTGAGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (41 bp):
AGTAATCAAATGTGCCATGTTGCATGCTATGATGTGAGGGC
Found at i:68908248 original size:29 final size:29
Alignment explanation
Indices: 68908215--68908303 Score: 151
Period size: 29 Copynumber: 3.1 Consensus size: 29
68908205 TGGTGACGAG
68908215 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGCGTGCTGGAAATAT
68908244 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGCGTGCTGGAAATAT
* * *
68908273 AAGGCACTAAGTGTGCATGCTGGAAAAAT
1 ATGGCACTAAGTGTGCGTGCTGGAAATAT
68908302 AT
1 AT
68908304 AACACTATGT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.26
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGTGCTGGAAATAT
Found at i:68908338 original size:29 final size:29
Alignment explanation
Indices: 68908215--68908338 Score: 149
Period size: 29 Copynumber: 4.3 Consensus size: 29
68908205 TGGTGACGAG
* *
68908215 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGCATGCTGGAAAAAT
* *
68908244 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGCATGCTGGAAAAAT
*
68908273 AAGGCACTAAGTGTGCATGCTGGAAAAAT
1 ATGGCACTAAGTGTGCATGCTGGAAAAAT
** * * *
68908302 ATAACACTATGTGCGCAAGCTGGAAAAAT
1 ATGGCACTAAGTGTGCATGCTGGAAAAAT
*
68908331 ACGGCACT
1 ATGGCACT
68908339 GGGTGTGCGA
Statistics
Matches: 83, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 83 1.00
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.23
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCATGCTGGAAAAAT
Found at i:68919082 original size:40 final size:40
Alignment explanation
Indices: 68919037--68919203 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
68919027 CGGAATATAA
68919037 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
68919077 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
68919117 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
68919157 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
68919196 CCGGATAT
1 CCGGATAT
68919204 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68919187 original size:80 final size:79
Alignment explanation
Indices: 68919037--68919203 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
68919027 CGGAATATAA
* *
68919037 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
68919102 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
68919117 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
68919179 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
68919196 CCGGATAT
1 CCGGATAT
68919204 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:68920050 original size:17 final size:19
Alignment explanation
Indices: 68920027--68920072 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
68920017 AAGAAGCATG
68920027 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
68920045 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
68920063 AATCATGCTC
1 AATCATGCTC
68920073 CTTTTTAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:68924195 original size:29 final size:30
Alignment explanation
Indices: 68924133--68924217 Score: 104
Period size: 29 Copynumber: 2.9 Consensus size: 30
68924123 GACGAGATTG
*
68924133 GCACTAAGTGTGCGTGCTGG--AAATATAA
1 GCACTAAGTGTGCATGCTGGAAAAATATAA
68924161 GGCACTAAGTGTGCATGCTGGAAAAATATAA
1 -GCACTAAGTGTGCATGCTGGAAAAATATAA
* * *
68924192 -CACTATGTGCGCAAGCTGGAAAAATA
1 GCACTAAGTGTGCATGCTGGAAAAATA
68924218 CGGCACTGGG
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
29 42 0.84
31 8 0.16
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.22
Consensus pattern (30 bp):
GCACTAAGTGTGCATGCTGGAAAAATATAA
Found at i:68924237 original size:29 final size:29
Alignment explanation
Indices: 68924132--68924237 Score: 99
Period size: 29 Copynumber: 3.7 Consensus size: 29
68924122 TGACGAGATT
* *
68924132 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
68924161 GGCACTAAGTGTGC-ATGCTGGAAAAATATA
1 GGCACTAAGTGTGCGA-GCTGGAAAAATA-A
* * * * *
68924191 -ACACTATGTGCGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
**
68924219 GGCACTGGGTGTGCGAGCT
1 GGCACTAAGTGTGCGAGCT
68924238 CGAAGGGTAT
Statistics
Matches: 62, Mismatches: 11, Indels: 8
0.77 0.14 0.10
Matches are distributed among these distances:
29 60 0.97
30 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.22
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGCTGGAAAAATAA
Found at i:68931710 original size:22 final size:23
Alignment explanation
Indices: 68931680--68931750 Score: 84
Period size: 22 Copynumber: 3.4 Consensus size: 23
68931670 ACCTTGACCG
68931680 AATATACATGTATCTATTATCAA
1 AATATACATGTATCTATTATCAA
*
68931703 AATA-ACA--TA-CTCTT-TC-A
1 AATATACATGTATCTATTATCAA
68931720 AATATACATGTATCTATTATCAA
1 AATATACATGTATCTATTATCAA
68931743 AATA-ACAT
1 AATATACAT
68931751 ACTCTTTCAA
Statistics
Matches: 40, Mismatches: 2, Indels: 13
0.73 0.04 0.24
Matches are distributed among these distances:
17 5 0.12
18 5 0.12
19 4 0.10
20 4 0.10
21 4 0.10
22 9 0.22
23 9 0.22
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.37
Consensus pattern (23 bp):
AATATACATGTATCTATTATCAA
Found at i:68931724 original size:40 final size:40
Alignment explanation
Indices: 68931680--68931761 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
68931670 ACCTTGACCG
68931680 AATATACATGTATCTATTATCAAAATAACATACTCTTTCA
1 AATATACATGTATCTATTATCAAAATAACATACTCTTTCA
68931720 AATATACATGTATCTATTATCAAAATAACATACTCTTTCA
1 AATATACATGTATCTATTATCAAAATAACATACTCTTTCA
68931760 AA
1 AA
68931762 GCCATATTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.44, C:0.17, G:0.02, T:0.37
Consensus pattern (40 bp):
AATATACATGTATCTATTATCAAAATAACATACTCTTTCA
Found at i:68931728 original size:18 final size:18
Alignment explanation
Indices: 68931702--68931761 Score: 52
Period size: 18 Copynumber: 3.2 Consensus size: 18
68931692 TCTATTATCA
68931702 AAATA-ACATACTCTTTC
1 AAATATACATACTCTTTC
*
68931719 AAATATACATGTATCTATTATC
1 AAATATACA--TA-CTCTT-TC
68931741 AAA-ATAACATACTCTTTC
1 AAATAT-ACATACTCTTTC
68931759 AAA
1 AAA
68931762 GCCATATTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 11
0.73 0.04 0.23
Matches are distributed among these distances:
17 5 0.14
18 8 0.23
19 4 0.11
20 4 0.11
21 6 0.17
22 8 0.23
ACGTcount: A:0.45, C:0.18, G:0.02, T:0.35
Consensus pattern (18 bp):
AAATATACATACTCTTTC
Found at i:68932387 original size:43 final size:41
Alignment explanation
Indices: 68932289--68932508 Score: 300
Period size: 41 Copynumber: 5.3 Consensus size: 41
68932279 ACATAAAATT
* * *
68932289 TGCTAGGC-ATAAAGCCT-AGTATAATACACCAGCACAGAGCT
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCC
* *
68932330 TGCTAGGCAATAAGCCTGATATAATACATCGGCATATAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGC--ACAAAGCC
68932373 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* *
68932414 TGCTAGGCAATAAGCCTGATTTAATACACCGGCACAAAGAC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * *
68932455 TGCTAGGCAATAAGCCTGGTTTAATACACCGACACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
68932496 TGCTAGGCAATAA
1 TGCTAGGCAATAA
68932509 AGCCCGAATA
Statistics
Matches: 163, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
41 123 0.75
42 3 0.02
43 37 0.23
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:68932492 original size:82 final size:83
Alignment explanation
Indices: 68932289--68932508 Score: 302
Period size: 84 Copynumber: 2.7 Consensus size: 83
68932279 ACATAAAATT
* * *
68932289 TGCTAGGC-ATAAAGCCTAGTATAATACACC-AGCACAGAGCTTGCTAGGCAATAAGCCTGATAT
1 TGCTAGGCAAT-AAGCCTGGTATAATACACCGA-CACAAAGCCTGCTAGGCAATAAGCCTGATAT
* * *
68932352 AATACATCGGCATATAAAGCC
64 AATACACCGGCA-ACAAAGAC
* * *
68932373 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATTTAA
1 TGCTAGGCAATAAGCCTGGTATAATACACCGACACAAAGCCTGCTAGGCAATAAGCCTGATATAA
68932438 TACACCGGC-ACAAAGAC
66 TACACCGGCAACAAAGAC
*
68932455 TGCTAGGCAATAAGCCTGGTTTAATACACCGACACAAAGCCTGCTAGGCAATAA
1 TGCTAGGCAATAAGCCTGGTATAATACACCGACACAAAGCCTGCTAGGCAATAA
68932509 AGCCCGAATA
Statistics
Matches: 122, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
82 57 0.47
84 63 0.52
85 2 0.02
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (83 bp):
TGCTAGGCAATAAGCCTGGTATAATACACCGACACAAAGCCTGCTAGGCAATAAGCCTGATATAA
TACACCGGCAACAAAGAC
Found at i:68936950 original size:50 final size:50
Alignment explanation
Indices: 68936823--68937116 Score: 329
Period size: 50 Copynumber: 5.8 Consensus size: 50
68936813 GTTGTGAGAA
* *** *
68936823 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGG--TTAGGT
*
68936875 CACATGTGTTGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGT
* * ** * * * * * *
68936925 CGCATGTGTAGTACTAATTTTAGGCTACTATGCGTACCCGAAAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAG-ATGGTTAGGT
* * * *
68936976 CACGTGTGTAATACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGT
* *
68937026 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGT
* **
68937075 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT
68937117 AGCTTCGATT
Statistics
Matches: 202, Mismatches: 39, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
49 41 0.20
50 87 0.43
51 36 0.18
52 38 0.19
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGT
Found at i:68937011 original size:101 final size:99
Alignment explanation
Indices: 68936874--68937104 Score: 291
Period size: 101 Copynumber: 2.3 Consensus size: 99
68936864 TGGTTTTAGG
** * *
68936874 TCACATGTGTTGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTCGCATGTGTAGTAC
1 TCACATGTGTAATACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTAC
* ** *
68936939 TAATTTTAGGCTACTATGCGTACCCGAAAGTTTCGA
66 TAAGTGCAGGCTACTATGCGTACCAGAAAG-TT-GA
* * *
68936975 TCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAATACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTAC
* ** *
68937040 TAAGTGCAGGCTACTATGTGTACCAGATTGTTGG
66 TAAGTGCAGGCTACTATGCGTACCAGAAAGTTGA
* *
68937074 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACATGTGTAATACTAAGTGCAGGCTACTA
68937105 TGCATACCAG
Statistics
Matches: 112, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
99 29 0.26
100 2 0.02
101 81 0.72
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (99 bp):
TCACATGTGTAATACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCAGAAAGTTGA
Found at i:68937150 original size:150 final size:149
Alignment explanation
Indices: 68936828--68937125 Score: 402
Period size: 151 Copynumber: 2.0 Consensus size: 149
68936818 GAGAACACAT
* * * *
68936828 GTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGTCACATGTGTTGTACTAAG
1 GTGT-GTAATATGTGCAGGCTACTACGTGTATAAAATGG-TTTAGGTCACATGTGTAGTACTAAG
* **
68936893 TGCAGGCTACTATGTGTACCAGATGGTTAGGTCGCATGTGTAGTACTAATTTTAGGCTACTATGC
64 TGCAGGCTACTATGTGTACCAGATGGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGC
* * *
68936958 GTACCCGAAAGTTTCGATCAC
129 ATACCAGAAAGCTTCGATCAC
* * *
68936979 GTGTGTAATACTAAGTGCAGGCTACTACGTGTATCAGATGG-TTAGGTCACGTGTGTAGTACTAA
1 GTGTGTAATA-T--GTGCAGGCTACTACGTGTATAAAATGGTTTAGGTCACATGTGTAGTACTAA
*
68937043 GTGCAGGCTACTATGTGTACCAGATTGTT-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
63 GTGCAGGCTACTATGTGTACCAGATGGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
*
68937107 CATACCAGATAGCTTCGAT
128 CATACCAGAAAGCTTCGAT
68937126 TACAAGGATG
Statistics
Matches: 129, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
150 52 0.40
151 54 0.42
153 23 0.18
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (149 bp):
GTGTGTAATATGTGCAGGCTACTACGTGTATAAAATGGTTTAGGTCACATGTGTAGTACTAAGTG
CAGGCTACTATGTGTACCAGATGGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCAT
ACCAGAAAGCTTCGATCAC
Found at i:68948834 original size:40 final size:40
Alignment explanation
Indices: 68948786--68948991 Score: 317
Period size: 40 Copynumber: 5.2 Consensus size: 40
68948776 GGACTAAGAT
68948786 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
68948826 TCGAAGGCATTTGTGCTAGTGACTATATCCGAGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
68948866 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
**
68948906 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAAAC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
68948946 CCGAAGGTATTCGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
68948985 CCGAAGG
1 CCGAAGG
68948992 TACTTGGGTT
Statistics
Matches: 155, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 15 0.10
40 138 0.89
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:68954183 original size:37 final size:37
Alignment explanation
Indices: 68954133--68954210 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
68954123 TATAAAAGAA
*
68954133 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
68954170 GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
68954207 GTCT
1 GTCT
68954211 CGCCCGGAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.21, C:0.33, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
Found at i:68954428 original size:49 final size:49
Alignment explanation
Indices: 68954313--68954435 Score: 194
Period size: 49 Copynumber: 2.5 Consensus size: 49
68954303 CATATATTTT
*
68954313 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
* *
68954362 ACATCGGCC-TAATGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTA-GGCCTCATCACATATACATACACTTTCACATTCACC
*
68954411 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
68954436 CATATATGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
48 2 0.03
49 63 0.94
50 2 0.03
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:68959048 original size:27 final size:27
Alignment explanation
Indices: 68959011--68959071 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
68959001 CAATACATCT
68959011 CATA-GGGCATAACAATCATTTTATCA
1 CATAGGGGCATAACAATCATTTTATCA
***
68959037 CATAGGGGCATAATTGTCATTTTATCA
1 CATAGGGGCATAACAATCATTTTATCA
68959064 -ATTAGGGG
1 CA-TAGGGG
68959072 TCCAAGTGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 5 0.17
27 25 0.83
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (27 bp):
CATAGGGGCATAACAATCATTTTATCA
Found at i:68960050 original size:129 final size:129
Alignment explanation
Indices: 68959820--68960077 Score: 489
Period size: 129 Copynumber: 2.0 Consensus size: 129
68959810 ACCAAAAGAA
68959820 TTAACCAACTGAAAGCAACTCGTGCTGGACAGAACCAACTACTCAAGAGAGGAAAATCCACAGAA
1 TTAACCAACTGAAAGCAACTCGTGCTGGACAGAACCAACTACTCAAGAGAGGAAAATCCACAGAA
* *
68959885 GAGGGAGGATTGGGAAGATCAAGTATTCGGCCAATGGGACAGAGAAAAATTGAAGGCAATCCCC
66 GAGGGAGGATGGGGAAGATCAAGTATTCGGCCAATGGGACAAAGAAAAATTGAAGGCAATCCCC
*
68959949 TTAACCAACTGAAAGCAACTCGTGCTGGATAGAACCAACTACTCAAGAGAGGAAAATCCACAGAA
1 TTAACCAACTGAAAGCAACTCGTGCTGGACAGAACCAACTACTCAAGAGAGGAAAATCCACAGAA
68960014 GAGGGAGGATGGGGAAGATCAAGTATTCGGCCAATGGGACAAAGAAAAATTGAAGGCAATCCCC
66 GAGGGAGGATGGGGAAGATCAAGTATTCGGCCAATGGGACAAAGAAAAATTGAAGGCAATCCCC
68960078 CTTTTAGAGA
Statistics
Matches: 126, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
129 126 1.00
ACGTcount: A:0.40, C:0.20, G:0.26, T:0.15
Consensus pattern (129 bp):
TTAACCAACTGAAAGCAACTCGTGCTGGACAGAACCAACTACTCAAGAGAGGAAAATCCACAGAA
GAGGGAGGATGGGGAAGATCAAGTATTCGGCCAATGGGACAAAGAAAAATTGAAGGCAATCCCC
Found at i:68968286 original size:29 final size:27
Alignment explanation
Indices: 68968252--68968354 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
68968242 TACTCAATCA
*
68968252 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
68968281 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
68968310 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
68968339 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
68968355 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:68976085 original size:29 final size:27
Alignment explanation
Indices: 68976051--68976153 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
68976041 TACTCAATCA
*
68976051 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
68976080 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
68976109 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
68976138 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
68976154 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:68989736 original size:19 final size:19
Alignment explanation
Indices: 68989709--68989757 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
68989699 AAAGGGCAGG
*
68989709 AAAACCAAAAAAAAAAACA
1 AAAAACAAAAAAAAAAACA
**
68989728 AAAAACAAAAATTAAAACA
1 AAAAACAAAAAAAAAAACA
*
68989747 AAGAACAAAAA
1 AAAAACAAAAA
68989758 TGAGCATCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.82, C:0.12, G:0.02, T:0.04
Consensus pattern (19 bp):
AAAAACAAAAAAAAAAACA
Found at i:68989758 original size:19 final size:19
Alignment explanation
Indices: 68989722--68989758 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
68989712 ACCAAAAAAA
68989722 AAAACAAAAAACAAAAATT
1 AAAACAAAAAACAAAAATT
*
68989741 AAAACAAAGAACAAAAAT
1 AAAACAAAAAACAAAAAT
68989759 GAGCATCAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.78, C:0.11, G:0.03, T:0.08
Consensus pattern (19 bp):
AAAACAAAAAACAAAAATT
Found at i:68991200 original size:14 final size:14
Alignment explanation
Indices: 68991181--68991208 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
68991171 ATCGCAATTT
68991181 TGAAAAATTTTAAA
1 TGAAAAATTTTAAA
68991195 TGAAAAATTTTAAA
1 TGAAAAATTTTAAA
68991209 AGGATATTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
TGAAAAATTTTAAA
Found at i:68999283 original size:48 final size:48
Alignment explanation
Indices: 68999158--68999538 Score: 304
Period size: 48 Copynumber: 7.9 Consensus size: 48
68999148 AGGGTAAGAT
* * * * *
68999158 GCCGATGCCACGTCTCAGACATGGTCTTACACTGGCTCTCATATTTCG-G
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATA--TCGAG
* * * *
68999207 TGCCGATTG-TATGTTCCAAACATGGTCTTACACTAGCCCACATGTCGAG
1 -GCCGA-TGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAG
* * * *
68999256 GCCGATGCCATGTCCCAAACATAGTCTTACACTAGCTCTCATATCAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAG
* * * *
68999304 GCCGATGGCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAG
* * * * *
68999352 GCTGATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCCTACATCG-G
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTC-AC-ATATCGAG
* * * * ** *
68999401 TGCCGATGCCATGTCGCAGACATGGTCTTACA-TTG-ACACATATAATAAT
1 -GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAT--CGAG
* * * *
68999450 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATTGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAG
* * * * *
68999498 GCTGATGCCATGTCCTAGACATGGTCTTACATTGGCTCACA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACA
68999539 CAACTCTAGT
Statistics
Matches: 262, Mismatches: 58, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
46 3 0.01
47 3 0.01
48 178 0.68
49 6 0.02
50 70 0.27
51 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAG
Found at i:68999335 original size:96 final size:96
Alignment explanation
Indices: 68999158--68999487 Score: 342
Period size: 98 Copynumber: 3.4 Consensus size: 96
68999148 AGGGTAAGAT
* * * * *
68999158 GCCGATGCCACGTCTCAGACATGGTCTTACACTGGCTCTCATATTTCGGTGCCGATTGTATGTTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA--TCGGTGCCGATGGCATGTTC
*
68999223 CAAACATGGTCTTACACTAGCCCACATGTCGAG
64 CAAACATGGTCTTACACTAGCCCACATATCGAG
* * **
68999256 GCCGATGCCATGTCCCAAACATAGTCTTACACTAGCTCTCATATCAATGCCGATGGCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGGTGCCGATGGCATGTTCCA
* * *
68999321 AACATGGTCTTACACTGGCTCATATATCGAG
66 AACATGGTCTTACACTAGCCCACATATCGAG
* * * *
68999352 GCTGATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCCTACATCGGTGCCGATGCCATG-TC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-C-ATATCGGTGCCGATGGCATGTTC
* * * ** *
68999416 GCAGACATGGTCTTACA-TTG-ACACATATAATAAT
64 -CAAACATGGTCTTACACTAGCCCACATAT--CGAG
* * *
68999450 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
68999488 ATATATTGAG
Statistics
Matches: 194, Mismatches: 33, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
96 86 0.44
97 5 0.03
98 103 0.53
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGGTGCCGATGGCATGTTCCA
AACATGGTCTTACACTAGCCCACATATCGAG
Found at i:68999429 original size:146 final size:146
Alignment explanation
Indices: 68999156--68999528 Score: 426
Period size: 146 Copynumber: 2.6 Consensus size: 146
68999146 AAAGGGTAAG
* * * * *
68999156 ATGCCGATGCCACG-TCTCAGACATGGTCTTACACTGGCTCTCATATTTCG-GTGCCGATTG-TA
1 ATGCCGATGCCATGTTC-CAAACATGGTCTTACACTGG--CTCATATATCGAG-GCTGA-TGCCA
* *
68999218 TGTTCCAAACATGGTCTTACACTAG--C-CC-ACATGTCGAG-GCCGATGCCATGTCCCAAACAT
61 TGTCCCAGACATGGTCTTACACTAGCTCTCCTACA--TCG-GTGCCGATGCCATGTCCCAAACAT
*
68999278 AGTCTTACACTAG-CTC-TCAT-ATCA
123 AGTCTTACA-TAGACACAT-ATAAT-A
*
68999302 ATGCCGATGGCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAGGCTGATGCCATGTCC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAGGCTGATGCCATGTCC
* * * *
68999367 CAGATATGGTCTTACACTAGCTCTCCTACATCGGTGCCGATGCCATGTCGCAGACATGGTCTTAC
66 CAGACATGGTCTTACACTAGCTCTCCTACATCGGTGCCGATGCCATGTCCCAAACATAGTCTTAC
*
68999432 ATTGACACATATAATA
131 ATAGACACATATAATA
*
68999448 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATTGAGGCTGATGCCATGTCC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAGGCTGATGCCATGTCC
*
68999513 TAGACATGGTCTTACA
66 CAGACATGGTCTTACA
68999529 TTGGCTCACA
Statistics
Matches: 198, Mismatches: 18, Indels: 22
0.83 0.08 0.09
Matches are distributed among these distances:
143 2 0.01
144 37 0.19
145 4 0.02
146 145 0.73
147 7 0.04
148 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (146 bp):
ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAGGCTGATGCCATGTCC
CAGACATGGTCTTACACTAGCTCTCCTACATCGGTGCCGATGCCATGTCCCAAACATAGTCTTAC
ATAGACACATATAATA
Found at i:69004897 original size:48 final size:48
Alignment explanation
Indices: 69004825--69005061 Score: 233
Period size: 48 Copynumber: 4.9 Consensus size: 48
69004815 TAATATCAAT
* *
69004825 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAG
* * * * *
69004873 GCTGATGCCATGTCCCAGATATGGTCTTACACTAGCTCTTATACATC-AG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC--ACATATCGAG
* * * * * * * *
69004922 TGCCGATGCCATGTCCCAGACATGATCTTACATTGACACATATAGCAAT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAG
* * * * *
69004971 GCTGAAGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAG
* * *
69005019 GCCAATGCCATGTCTCAGATATGGTCTTACACTGGCTCACATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATA
69005062 ACCCTAGTAC
Statistics
Matches: 148, Mismatches: 37, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
48 109 0.74
49 3 0.02
50 36 0.24
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAG
Found at i:69005060 original size:98 final size:98
Alignment explanation
Indices: 69004819--69005061 Score: 256
Period size: 98 Copynumber: 2.5 Consensus size: 98
69004809 AACCTCTAAT
* * * * * *
69004819 ATCAATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCTGATGCCAT
1 ATCAGTGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAGGCTGAAGCCAT
* * **
69004884 GTCCCAGATATGGTCTTACACTAGCTCTTATAC
66 GTCCCAAACATGGTCTTACACTAGCTCACATAC
* * * * * * * *
69004917 ATCAGTGCCGATGCCATGTCCCAGACATGATCTTACATTGACACATATAGCAATGCTGAAGCCAT
1 ATCAGTGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAGGCTGAAGCCAT
* *
69004982 GTTCCAAACATGGTCTTACACTGGCTCACATA-
66 GTCCCAAACATGGTCTTACACTAGCTCACATAC
* * * *
69005014 TTGAG-GCCAATGCCATGTCTCAGATATGGTCTTACACTGGCTCACATA
1 ATCAGTGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATA
69005062 ACCCTAGTAC
Statistics
Matches: 117, Mismatches: 28, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
96 35 0.30
97 3 0.03
98 79 0.68
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (98 bp):
ATCAGTGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAGGCTGAAGCCAT
GTCCCAAACATGGTCTTACACTAGCTCACATAC
Found at i:69020760 original size:17 final size:17
Alignment explanation
Indices: 69020738--69020771 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
69020728 CTACTAGGAT
69020738 ATCAATTAGTACGAGTG
1 ATCAATTAGTACGAGTG
69020755 ATCAATTAGTACGAGTG
1 ATCAATTAGTACGAGTG
69020772 CATTTTCAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (17 bp):
ATCAATTAGTACGAGTG
Found at i:69024889 original size:55 final size:53
Alignment explanation
Indices: 69024802--69025056 Score: 195
Period size: 55 Copynumber: 4.8 Consensus size: 53
69024792 AGTAGGGTTT
*
69024802 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAACGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAA-GC
* * * * * *
69024857 AAGGATGCCATGTAATACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGC
* * * *
69024911 AA-AATGTCTCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 AAGGAT-AC-CATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAA-GC
* * * *
69024965 AAGGATACTATGTAAGACCATGTCGAGAAATGGCAA-TGGTAAGTTTC-AA--
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGC
* * * **
69025014 AAGGATACCACGTAAAACCATGACAATTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
69025057 GTACCCATGT
Statistics
Matches: 159, Mismatches: 32, Indels: 24
0.74 0.15 0.11
Matches are distributed among these distances:
49 35 0.22
52 3 0.02
53 35 0.22
54 20 0.13
55 66 0.42
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGC
Found at i:69024998 original size:53 final size:53
Alignment explanation
Indices: 69024802--69025009 Score: 197
Period size: 55 Copynumber: 3.8 Consensus size: 53
69024792 AGTAGGGTTT
* *
69024802 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAACGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * * *
69024857 AAGGATGCCATGTAATACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * * *
69024911 AA-AATGTCTCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGAT-AC-CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * * * *
69024965 AAGGATACTATGTAAGACCATGTCGAGAAATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
69025010 TCAAAAGGAT
Statistics
Matches: 124, Mismatches: 22, Indels: 16
0.77 0.14 0.10
Matches are distributed among these distances:
52 2 0.02
53 40 0.32
54 14 0.11
55 68 0.55
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:69025008 original size:108 final size:110
Alignment explanation
Indices: 69024810--69025009 Score: 289
Period size: 108 Copynumber: 1.8 Consensus size: 110
69024800 TTAAGGATAC
* *
69024810 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAACGCAAGGATGCCATGTAATAC
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAACGCAAGGATACCATGTAAGAC
* *
69024875 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGAAAATGTCT
66 CATGTCAAGAAATGGCAATGATAAGTTACTATAAGGAAAATGTCT
* * *
69024920 CATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACTATGTAAGA
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAACGCAAGGATACCATGTAAGA
* *
69024982 CCATGTCGAGAAATGGCAATGGTAAGTT
65 CCATGTCAAGAAATGGCAATGATAAGTT
69025010 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 44 0.55
109 7 0.09
110 26 0.32
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (110 bp):
CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAACGCAAGGATACCATGTAAGAC
CATGTCAAGAAATGGCAATGATAAGTTACTATAAGGAAAATGTCT
Found at i:69025269 original size:16 final size:16
Alignment explanation
Indices: 69025248--69025278 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69025238 ATAAATTTGA
69025248 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
69025264 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
69025279 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:69032688 original size:52 final size:53
Alignment explanation
Indices: 69032461--69032767 Score: 233
Period size: 55 Copynumber: 5.8 Consensus size: 53
69032451 AGGAGGGTTT
* *
69032461 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAATGC
1 AAGGATACCATGTAAGACCATGACAAGGCATGGC-ATTGGTAA-G-TTCATAAGGC
* * * * *
69032516 AAGGATGCCATGTAATACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGACAAGGCATGGCATTGGTAAGTT-C-ATAAGGC
* * *
69032571 AA--ATGTCTCATGTAAGACCAT-ACCAAGGCATGGCATTGGTGAGTTCATAAGGTA
1 AAGGAT-AC-CATGTAAGACCATGA-CAAGGCATGGCATTGGTAAGTTCATAAGG-C
* *
69032625 AAGG-T-CTCATGTAAGACCAT-ACAACGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATAC-CATGTAAGACCATGACAAGGCATGGCATTGGTAAGTTCATAAGGC
* * * * *
69032676 AAGGATACCATGTATGACCATGTCGAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGACAAGGCATGGCATTGGTAAGTTCAT-AAGGC
* * ** *
69032725 AAGGATACCACGTAAGACCATGAAAATTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGACAAGGCATGGCATTGGTAAG
69032768 GTACCCGTGT
Statistics
Matches: 210, Mismatches: 29, Indels: 32
0.77 0.11 0.12
Matches are distributed among these distances:
49 36 0.17
51 5 0.02
52 45 0.21
53 44 0.21
54 11 0.05
55 69 0.33
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGACAAGGCATGGCATTGGTAAGTTCATAAGGC
Found at i:69032980 original size:16 final size:16
Alignment explanation
Indices: 69032959--69032989 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69032949 ATAAATTTGA
69032959 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
69032975 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
69032990 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:69034261 original size:23 final size:22
Alignment explanation
Indices: 69034234--69034320 Score: 88
Period size: 22 Copynumber: 3.9 Consensus size: 22
69034224 ATAGCTCGTA
69034234 AGAGCTTACTGTTTCAGCTCATT
1 AGAGCTTACTG-TTCAGCTCATT
* *
69034257 GGAGCTTATTGTTCAGCAT-ATT
1 AGAGCTTACTGTTCAGC-TCATT
*
69034279 AGAGCTTACCT-TGTCAGCTCAAT
1 AGAGCTTA-CTGT-TCAGCTCATT
*
69034302 AGAGATTACTGTTCAGCTC
1 AGAGCTTACTGTTCAGCTC
69034321 GAAGGAGCTT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
22 27 0.51
23 26 0.49
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.36
Consensus pattern (22 bp):
AGAGCTTACTGTTCAGCTCATT
Found at i:69034332 original size:22 final size:20
Alignment explanation
Indices: 69034233--69034332 Score: 51
Period size: 22 Copynumber: 4.5 Consensus size: 20
69034223 CATAGCTCGT
69034233 AAGAGCTTACTGTTTCAGCTC
1 AAGAGCTTACTG-TTCAGCTC
* *
69034254 ATTGGAGCTTATTGTTCAGCAT-
1 A--AGAGCTTACTGTTCAGC-TC
69034276 ATTAGAGCTTACCT-TGTCAGCTC
1 A--AGAGCTTA-CTGT-TCAGCTC
*
69034299 AATAGAGATTACTGTTCAGCTC
1 -A-AGAGCTTACTGTTCAGCTC
69034321 GAAGGAGCTTAC
1 -AA-GAGCTTAC
69034333 CGACCATGAC
Statistics
Matches: 63, Mismatches: 7, Indels: 17
0.72 0.08 0.20
Matches are distributed among these distances:
21 2 0.03
22 35 0.56
23 25 0.40
24 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (20 bp):
AAGAGCTTACTGTTCAGCTC
Found at i:69043017 original size:49 final size:49
Alignment explanation
Indices: 69042961--69043175 Score: 376
Period size: 49 Copynumber: 4.4 Consensus size: 49
69042951 TACATATATG
* * * *
69042961 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
69043010 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
69043059 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
69043108 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
69043157 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
69043176 TAATGTAAAA
Statistics
Matches: 160, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 160 1.00
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:69043327 original size:37 final size:37
Alignment explanation
Indices: 69043277--69043361 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
69043267 GGAATATGTT
*
69043277 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
69043314 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
69043351 CCGGGTAAGAC
1 CCGGGTAAGAC
69043362 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:69045458 original size:29 final size:29
Alignment explanation
Indices: 69045416--69045579 Score: 283
Period size: 29 Copynumber: 5.7 Consensus size: 29
69045406 GCGAATGATT
69045416 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
69045445 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
69045474 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
69045503 GAGGCACTATGTGTGCGAGATCGGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
* *
69045532 GAGGCACTATGTGTGTGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
69045561 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
69045580 TTTTTCAACA
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 127 1.00
ACGTcount: A:0.26, C:0.15, G:0.34, T:0.26
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:69046157 original size:40 final size:41
Alignment explanation
Indices: 69046059--69046157 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
69046049 TTCGAATGGT
* ** * *
69046059 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
69046100 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TAACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTAACTA-A
69046141 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
69046158 GGACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.36
41 29 0.58
42 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
Found at i:69048934 original size:49 final size:49
Alignment explanation
Indices: 69048878--69049043 Score: 287
Period size: 49 Copynumber: 3.4 Consensus size: 49
69048868 TACATATATG
* * *
69048878 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
69048927 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
69048976 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
69049025 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
69049044 TAGTGTAAAT
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 111 1.00
ACGTcount: A:0.30, C:0.10, G:0.32, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:69049198 original size:37 final size:37
Alignment explanation
Indices: 69049141--69049224 Score: 143
Period size: 37 Copynumber: 2.3 Consensus size: 37
69049131 GGAATATGTT
*
69049141 CCGGGTGAGA-CCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
69049177 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
69049214 CCGGGTAAGAC
1 CCGGGTAAGAC
69049225 TTCTTTTATA
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
36 9 0.20
37 36 0.80
ACGTcount: A:0.25, C:0.19, G:0.35, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:69051317 original size:29 final size:29
Alignment explanation
Indices: 69051275--69051462 Score: 314
Period size: 29 Copynumber: 6.7 Consensus size: 29
69051265 GCGAATGATT
69051275 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
69051304 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
69051333 GAGGCACTATGTGT--GAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
69051360 ---GCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
69051386 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
69051415 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
69051444 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
69051463 TTTTTCAACA
Statistics
Matches: 152, Mismatches: 2, Indels: 10
0.93 0.01 0.06
Matches are distributed among these distances:
24 11 0.07
26 13 0.09
27 13 0.09
29 115 0.76
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:69051398 original size:82 final size:83
Alignment explanation
Indices: 69051278--69051442 Score: 305
Period size: 82 Copynumber: 2.0 Consensus size: 83
69051268 AATGATTGAG
69051278 GCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTAT
1 GCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTAT
69051343 GTGT-GAGATCAGTAATC
66 GTGTCGAGATCAGTAATC
*
69051360 GCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATTGAGGCACTAT
1 GCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTAT
69051425 GTGTGCGAGATCAGTAAT
66 GTGT-CGAGATCAGTAAT
69051443 TGAGGCACTG
Statistics
Matches: 80, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
82 68 0.85
84 12 0.15
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (83 bp):
GCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTAT
GTGTCGAGATCAGTAATC
Found at i:69054777 original size:49 final size:49
Alignment explanation
Indices: 69054717--69054882 Score: 278
Period size: 49 Copynumber: 3.4 Consensus size: 49
69054707 TACATATATG
* * * *
69054717 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
69054766 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
69054815 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
69054864 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
69054883 TAGTGTAAAA
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 111 1.00
ACGTcount: A:0.28, C:0.10, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:69055038 original size:37 final size:37
Alignment explanation
Indices: 69054984--69055068 Score: 143
Period size: 37 Copynumber: 2.3 Consensus size: 37
69054974 GGAATATGTT
*
69054984 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
* *
69055021 CCGGGTAAGACCTGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
69055058 CCGGGTAAGAC
1 CCGGGTAAGAC
69055069 TTCTTTTATA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.22
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:69057165 original size:29 final size:29
Alignment explanation
Indices: 69057123--69057312 Score: 332
Period size: 29 Copynumber: 6.7 Consensus size: 29
69057113 GCGAATGATT
69057123 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
69057152 GAGGCACTATGTGTGCGAGATCAGTAAT-
1 GAGGCACTATGTGTGCGAGATCAGTAATC
69057180 GAGGCACTATGTGT--GAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
69057207 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
69057236 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
69057265 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
69057294 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
69057313 TTTTTCAACA
Statistics
Matches: 156, Mismatches: 2, Indels: 6
0.95 0.01 0.04
Matches are distributed among these distances:
26 12 0.08
27 14 0.09
28 14 0.09
29 116 0.74
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.25
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:69057893 original size:40 final size:41
Alignment explanation
Indices: 69057795--69057893 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
69057785 TTCGAATGGT
* ** * *
69057795 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
69057836 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TAACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTAACTA-A
69057877 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
69057894 GGACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.36
41 29 0.58
42 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
Found at i:69060674 original size:49 final size:49
Alignment explanation
Indices: 69060614--69060785 Score: 272
Period size: 49 Copynumber: 3.5 Consensus size: 49
69060604 TACATATATG
* * *
69060614 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
* *
69060663 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
* *
69060712 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
*
69060761 TGTGATAAGGCCTAATGGCTAATGT
1 TGTGATAAGGCCTAATGGCCAATGT
69060786 AAAATATATG
Statistics
Matches: 115, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 115 1.00
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:69060938 original size:36 final size:36
Alignment explanation
Indices: 69060881--69060964 Score: 141
Period size: 36 Copynumber: 2.3 Consensus size: 36
69060871 GGAATATGTT
*
69060881 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGA-CCGATGACTACGTGTGGAGATTATGA
*
69060918 CCGGGTAAGACCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCGATGACTACGTGTGGAGATTATGA
69060954 CCGGGTAAGAC
1 CCGGGTAAGAC
69060965 TTCTTTTATA
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
36 36 0.80
37 9 0.20
ACGTcount: A:0.25, C:0.19, G:0.35, T:0.21
Consensus pattern (36 bp):
CCGGGTAAGACCGATGACTACGTGTGGAGATTATGA
Found at i:69063526 original size:37 final size:37
Alignment explanation
Indices: 69063476--69063627 Score: 250
Period size: 37 Copynumber: 4.1 Consensus size: 37
69063466 ACCTTTAGCT
* * *
69063476 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
69063513 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
69063550 CGGACAAAATCTCCACAAGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* *
69063587 CGGACATAATCTCCACACGTAGTCATCGGGTCTCACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
69063624 CGGA
1 CGGA
69063628 ATATATTTTC
Statistics
Matches: 108, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 108 1.00
ACGTcount: A:0.27, C:0.32, G:0.20, T:0.21
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:69063842 original size:47 final size:47
Alignment explanation
Indices: 69063790--69064159 Score: 307
Period size: 47 Copynumber: 7.5 Consensus size: 47
69063780 TTTCACACTA
* * * * *
69063790 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
69063837 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
69063884 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
69063931 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACATAT-
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT-TG
* * ** * * ** *
69063978 TCATATTCACCACATTGGCCATTCGGCCT-TAT-CACACAT-ATGCATGCTCACATTCATCACAT
1 GC-CATTCGGC-C-TT----A-TC-ACATATATGCATGC-TCA--CAT--T--CATC----ACAT
69064040 TG
46 TG
* * * * * *
69064042 GCCATTTGACCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
69064089 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
69064136 GCCATTCGGCCTTATCACATATAT
1 GCCATTCGGCCTTATCACATATAT
69064160 ACACATTCAC
Statistics
Matches: 257, Mismatches: 41, Indels: 50
0.74 0.12 0.14
Matches are distributed among these distances:
47 200 0.78
48 6 0.02
49 1 0.00
50 1 0.00
51 2 0.01
53 1 0.00
54 4 0.02
55 10 0.04
56 11 0.04
57 4 0.02
58 1 0.00
60 3 0.01
61 2 0.01
62 1 0.00
63 5 0.02
64 5 0.02
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:69063976 original size:25 final size:25
Alignment explanation
Indices: 69063897--69063977 Score: 73
Period size: 25 Copynumber: 3.4 Consensus size: 25
69063887 ATTCGGCCTT
*
69063897 ATCACATATATGCATGCTCACATTC
1 ATCACATATATGCATGTTCACATTC
* * *
69063922 ATCACAT-T-GGCCA--TTCGGC-CTC
1 ATCACATATATG-CATGTTC-ACATTC
69063944 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCACATTC
69063969 ATCACATAT
1 ATCACATAT
69063978 TCATATTCAC
Statistics
Matches: 42, Mismatches: 7, Indels: 14
0.67 0.11 0.22
Matches are distributed among these distances:
22 11 0.26
23 5 0.12
24 5 0.12
25 21 0.50
ACGTcount: A:0.30, C:0.28, G:0.10, T:0.32
Consensus pattern (25 bp):
ATCACATATATGCATGTTCACATTC
Found at i:69063986 original size:23 final size:25
Alignment explanation
Indices: 69063942--69063987 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69063932 CCATTCGGCC
*
69063942 TCATCACATATATGCATGTTCACAT
1 TCATCACATATATGCATATTCACAT
69063967 TCATCACATAT-T-CATATTCAC
1 TCATCACATATATGCATATTCAC
69063988 CACATTGGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 8 0.40
24 1 0.05
25 11 0.55
ACGTcount: A:0.33, C:0.26, G:0.04, T:0.37
Consensus pattern (25 bp):
TCATCACATATATGCATATTCACAT
Found at i:69063993 original size:64 final size:64
Alignment explanation
Indices: 69063918--69064039 Score: 208
Period size: 64 Copynumber: 1.9 Consensus size: 64
69063908 GCATGCTCAC
* * *
69063918 ATTCATCACATTGGCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACATATTCAT
1 ATTCACCACATTGGCCATTCGGCCTCATCACACATATGCATGCTCACATTCATCACATATTCAT
*
69063982 ATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACAT
1 ATTCACCACATTGGCCATTCGGCCTCATCACACATATGCATGCTCACATTCATCACAT
69064040 TGGCCATTTG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (64 bp):
ATTCACCACATTGGCCATTCGGCCTCATCACACATATGCATGCTCACATTCATCACATATTCAT
Found at i:69063999 original size:111 final size:111
Alignment explanation
Indices: 69063871--69064086 Score: 360
Period size: 111 Copynumber: 1.9 Consensus size: 111
69063861 GCATGCTCAC
* *
69063871 ATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCAT
1 ATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCAT
* * *
69063936 TCGGCCTCATCACATATATGCATGTTCACATTCATCACATATTCAT
66 TCGACCTCATCACATATATACATGTTCACATTCACCACATATTCAT
69063982 ATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCAT
1 ATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCAT
* * *
69064047 TTGACCTTATCACATATATACATGTTCATATTCACCACAT
66 TCGACCTCATCACATATATACATGTTCACATTCACCACAT
69064087 TGGCCATTCG
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
111 97 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (111 bp):
ATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCAT
TCGACCTCATCACATATATACATGTTCACATTCACCACATATTCAT
Found at i:69064086 original size:94 final size:94
Alignment explanation
Indices: 69063972--69064168 Score: 358
Period size: 94 Copynumber: 2.1 Consensus size: 94
69063962 CACATTCATC
69063972 ACATATTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
1 ACATATTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
*
69064037 CATTGGCCATTTGACCTTATCACATATAT
66 CATTGGCCATTCGACCTTATCACATATAT
*
69064066 ACATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
1 ACATATTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
*
69064131 CATTGGCCATTCGGCCTTATCACATATAT
66 CATTGGCCATTCGACCTTATCACATATAT
*
69064160 ACACATTCA
1 ACATATTCA
69064169 CATCCATCAC
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 98 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.32
Consensus pattern (94 bp):
ACATATTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
CATTGGCCATTCGACCTTATCACATATAT
Found at i:69064107 original size:158 final size:158
Alignment explanation
Indices: 69063819--69064133 Score: 549
Period size: 158 Copynumber: 2.0 Consensus size: 158
69063809 TATATGCATG
69063819 TTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 TTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
* * *
69063884 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTCATCAC
66 GCCATTCGACCTTATCACATATATACATGCTCACATTCACCACATTGGCCATTCGGCCTCATCAC
* *
69063949 ATATATGCATGTTCACATTCATCACATA
131 ACATATGCATGCTCACATTCATCACATA
69063977 TTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 TTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
* * * *
69064042 GCCATTTGACCTTATCACATATATACATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
66 GCCATTCGACCTTATCACATATATACATGCTCACATTCACCACATTGGCCATTCGGCCTCATCAC
69064107 ACATATGCATGCTCACATTCATCACAT
131 ACATATGCATGCTCACATTCATCACAT
69064134 TGGCCATTCG
Statistics
Matches: 148, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
158 148 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (158 bp):
TTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
GCCATTCGACCTTATCACATATATACATGCTCACATTCACCACATTGGCCATTCGGCCTCATCAC
ACATATGCATGCTCACATTCATCACATA
Found at i:69064142 original size:205 final size:205
Alignment explanation
Indices: 69063790--69064181 Score: 613
Period size: 205 Copynumber: 1.9 Consensus size: 205
69063780 TTTCACACTA
* * * * *
69063790 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTACCACACATATGCATGCTCACATTCACCACATTGGCCATTCGACCTTATCAC
* * *
69063855 ACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACAT
66 ACATATACATGCTCACATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACAT
* ** *
69063920 TCATCACATTGGCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACATATTCATATT
131 TCATCACATTGGCCATTCGGCCTCATCACATATATACACATTCACATCCATCACATATTCATATT
69063985 CACCACATTG
196 CACCACATTG
* * *
69063995 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTTGACCTTATCAC
1 GCCATTCGGCCTTACCACACATATGCATGCTCACATTCACCACATTGGCCATTCGACCTTATCAC
* * *
69064060 ATATATACATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACAT
66 ACATATACATGCTCACATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACAT
*
69064125 TCATCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATCCATCACATA
131 TCATCACATTGGCCATTCGGCCTCATCACATATATACACATTCACATCCATCACATA
69064182 AAATCCTAAA
Statistics
Matches: 168, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
205 168 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (205 bp):
GCCATTCGGCCTTACCACACATATGCATGCTCACATTCACCACATTGGCCATTCGACCTTATCAC
ACATATACATGCTCACATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACAT
TCATCACATTGGCCATTCGGCCTCATCACATATATACACATTCACATCCATCACATATTCATATT
CACCACATTG
Found at i:69064170 original size:47 final size:47
Alignment explanation
Indices: 69063972--69064180 Score: 274
Period size: 47 Copynumber: 4.4 Consensus size: 47
69063962 CACATTCATC
* * *
69063972 ACATATTCATATTCACCACATTGGCCATTCGGCCTTATCACACATAT
1 ACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
* * * * *
69064019 GCATGCTCACATTCATCACATTGGCCATTTGACCTTATCACATATAT
1 ACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
* *
69064066 ACATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATAT
1 ACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
* * *
69064113 GCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
1 ACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
** *
69064160 ACACATTCACATCCATCACAT
1 ACATGTTCACATTCATCACAT
69064181 AAAATCCTAA
Statistics
Matches: 137, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 137 1.00
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
ACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
Found at i:69076770 original size:12 final size:12
Alignment explanation
Indices: 69076753--69076778 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
69076743 ATGTAAGTGA
69076753 TCTTGATGATTT
1 TCTTGATGATTT
69076765 TCTTGATGATTT
1 TCTTGATGATTT
69076777 TC
1 TC
69076779 ACATTTTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.58
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:69077644 original size:47 final size:44
Alignment explanation
Indices: 69077483--69077749 Score: 173
Period size: 47 Copynumber: 5.7 Consensus size: 44
69077473 ATTTGTGTGT
* * **
69077483 CAGTGTAAGACCATGTCTGGGACATGGCATTGGCATC-CAGACGAGGGC
1 CAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC--CGAAGA-GATAGC
* * * *
69077531 TAGTGTAAGACATGTCTGGGACATGCTTCAGCC-ATATTATGAGT-GC
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCGA-A-GA-GA-TAGC
*
69077577 CAGAGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATAGC
1 CAGTGTAAGACATGTCTGGGACATGCATCGG-C-CGA-AGAGATAGC
* * * *
69077624 CAGTGTAAGACGTGTCTGGGACACGCATCGGCC-AAGAGTTGTGC
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCGAAGAGAT-AGC
* * * *
69077668 TAGTGTAAGACATGTCTGGGACATGCATCAGCACGCATATATGAGAGC
1 CAGTGTAAGACATGTCTGGGACATGCATCGGC-CG-A-AGA-GATAGC
*
69077716 CAGTATAAGACCATGTCTGGGACATGGCATCGGC
1 CAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
69077750 AATTCATTCC
Statistics
Matches: 174, Mismatches: 30, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
43 5 0.03
44 32 0.18
45 3 0.02
46 39 0.22
47 48 0.28
48 23 0.13
49 17 0.10
50 7 0.04
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (44 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGGCCGAAGAGATAGC
Found at i:69080523 original size:20 final size:20
Alignment explanation
Indices: 69080498--69080537 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
69080488 TACAGAAGAA
*
69080498 GTTGTTACCTTCTTTAGAGG
1 GTTGTTACCTTCATTAGAGG
69080518 GTTGTTACCTTCATTAGAGG
1 GTTGTTACCTTCATTAGAGG
69080538 TTTTGTTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.17, C:0.15, G:0.25, T:0.42
Consensus pattern (20 bp):
GTTGTTACCTTCATTAGAGG
Found at i:69081354 original size:16 final size:15
Alignment explanation
Indices: 69081300--69081355 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 15
69081290 TTTCTATTTT
69081300 TTTTTGTTTTTCTATTA
1 TTTTT-TTTTTCT-TTA
* *
69081317 TTTTGTTTTT-GTTA
1 TTTTTTTTTTCTTTA
69081331 TTTGTTTTTTTCTTTAA
1 TTT-TTTTTTTCTTT-A
69081348 TTTTTTTT
1 TTTTTTTT
69081356 GGGTTGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
14 6 0.19
15 6 0.19
16 12 0.38
17 8 0.25
ACGTcount: A:0.09, C:0.04, G:0.07, T:0.80
Consensus pattern (15 bp):
TTTTTTTTTTCTTTA
Found at i:69086824 original size:6 final size:6
Alignment explanation
Indices: 69086813--69086838 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
69086803 GATACTTGGT
69086813 CAAGCA CAAGCA CAAGCA CAAGCA CA
1 CAAGCA CAAGCA CAAGCA CAAGCA CA
69086839 TGCATGCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.35, G:0.15, T:0.00
Consensus pattern (6 bp):
CAAGCA
Found at i:69088309 original size:3 final size:3
Alignment explanation
Indices: 69088301--69088330 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
69088291 AGTGTCTATC
69088301 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
69088331 TTTGTGATCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:69090202 original size:27 final size:31
Alignment explanation
Indices: 69090153--69090208 Score: 84
Period size: 27 Copynumber: 1.9 Consensus size: 31
69090143 GATAAATTAA
69090153 ATATAAATTATTCTATTTATATTTATTTTAT
1 ATATAAATTATTCTATTTATATTTATTTTAT
69090184 ATATAAA-TATT-TA-TT-TATTTATTTT
1 ATATAAATTATTCTATTTATATTTATTTT
69090209 GTTCGCTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 10 0.40
28 2 0.08
29 2 0.08
30 4 0.16
31 7 0.28
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (31 bp):
ATATAAATTATTCTATTTATATTTATTTTAT
Found at i:69091402 original size:210 final size:209
Alignment explanation
Indices: 69091013--69091430 Score: 640
Period size: 210 Copynumber: 2.0 Consensus size: 209
69091003 ATTATTGGCA
*
69091013 GTGAAAGTGTGTCAGGTAGTAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAACT
1 GTGAAAGTGTGCCAGGTAGTAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAACT
* * ** *
69091078 ACTAACTAGTTTCTATTACAATGTGCGATGAGACTGAAAGTTGAATGTTGGAGACAAATGAGTAG
66 ACTAACTAGTTTCTATTACAATGTGCGATGAGACTGAAAGCTAAATGTCAGAGACAAATGAGCAG
* * * * * *
69091143 CGATGCTTGAGGACTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGACTGGGTGAATGG
131 CGACGCTGGAGGACTCTGAGCGTGGTGGGGGTGTTGTCTTTGCGAATGAGTAAATGGGTGAATAG
69091208 GGGAACTAAGGTTG
196 GGGAACTAAGGTTG
* *
69091222 GTGAAAGTGTGCCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAAT
1 GTGAAAGTGTGCCAGGTAGT-AAATTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAAC
* * *
69091287 TACTAACTAGTTGT-TATTTCAATGTGCGATGAGATTGAAGGCTAAATGTCAGAGACAAATGAGC
65 TACTAACTAGTT-TCTATTACAATGTGCGATGAGACTGAAAGCTAAATGTCAGAGACAAATGAGC
* *
69091351 AGCGACGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGCGAATGAGTAAATGGGTGAGT
129 AGCGACGCTGGAGGACTCTGAGCGTGGTGGGGGTGTTGTCTTTGCGAATGAGTAAATGGGTGAAT
69091416 AGGGGAACTAAGGTT
194 AGGGGAACTAAGGTT
69091431 CAGAATTTGC
Statistics
Matches: 188, Mismatches: 19, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
209 18 0.10
210 169 0.90
211 1 0.01
ACGTcount: A:0.28, C:0.10, G:0.30, T:0.32
Consensus pattern (209 bp):
GTGAAAGTGTGCCAGGTAGTAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAACT
ACTAACTAGTTTCTATTACAATGTGCGATGAGACTGAAAGCTAAATGTCAGAGACAAATGAGCAG
CGACGCTGGAGGACTCTGAGCGTGGTGGGGGTGTTGTCTTTGCGAATGAGTAAATGGGTGAATAG
GGGAACTAAGGTTG
Found at i:69092277 original size:208 final size:208
Alignment explanation
Indices: 69091896--69092453 Score: 744
Period size: 208 Copynumber: 2.6 Consensus size: 208
69091886 GATTATTGGC
* *
69091896 AGTGAAAGTGTGTTAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAG-TTATTTTAGTA
1 AGTGAAAGTGTGTCAGGTGGTAAAATTATT-TATGCATTATCATAATAAGTAGTTTTTTTTAGTA
* *
69091960 ACTACTAACTAGTTGTTATTACAATGTGTGATGAGACTGAAGGCTAAATGTTGGAGACAAATGAG
65 ACTACTAACTAGTTGTTATTACAATGTGCGAT-AGACTGAAGGCTGAATGTTGGAGACAAATGAG
* * * * * *
69092025 TAGCGACGCTGGAGGTCTGTGAACGTGGTGGGGGTGTTGTCTTTGCGAATGAGTGACA-GGGTGA
129 TAACGACGCTGGAGATCTCTGAACGTGATGGGGGTGATGTCTTTGCGAATGAGTGA-ATGGATGA
*
69092089 GTAGGGGAACTGAGGTT
193 GTA-GGGAACTGAGGCT
* * * *
69092106 GGTGCAAGTGTGTCAGGTGGCAAAATTATTTATACATTATCATAATAAGTAGTTTTTTTTAGTAA
1 AGTGAAAGTGTGTCAGGTGGTAAAATTATTTATGCATTATCATAATAAGTAGTTTTTTTTAGTAA
* *
69092171 CTATTAACTAGTTGTTATTACAATGTGCGAT-GACTGAAGGCTGAATGTTAGAGACAAATGAGTA
66 CTACTAACTAGTTGTTATTACAATGTGCGATAGACTGAAGGCTGAATGTTGGAGACAAATGAGTA
* *
69092235 ACGACGCTGGAGATCTCTGAGCGTGATGGGGGTGATGTCTTTGTGAATGAGTGAATGGATGAGTA
131 ACGACGCTGGAGATCTCTGAACGTGATGGGGGTGATGTCTTTGCGAATGAGTGAATGGATGAGTA
69092300 GGGAACTGAGGCT
196 GGGAACTGAGGCT
*
69092313 AGTGAAAGTGTGTCAGGTGGTAAAATGGTAAAATTATTGCATGCATTATCATAGTAAGTAGTTTC
1 AGTGAAAGTGTGTCAGGTGGTAAAAT--T---A-T-TT--ATGCATTATCATAATAAGTAGTTT-
* * * *
69092378 TTTTTAGTAACTACTAACTAGTCGTTATTACAATGTGCAATAAAACTGAAAGCTGAATGTTGGAG
56 TTTTTAGTAACTACTAACTAGTTGTTATTACAATGTGCGAT-AGACTGAAGGCTGAATGTTGGAG
69092443 ACAAATGAGTA
120 ACAAATGAGTA
69092454 GCGGTGCTGG
Statistics
Matches: 304, Mismatches: 30, Indels: 19
0.86 0.08 0.05
Matches are distributed among these distances:
207 36 0.12
208 86 0.28
209 22 0.07
210 66 0.22
212 1 0.00
213 1 0.00
214 2 0.01
216 22 0.07
217 38 0.12
219 30 0.10
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.32
Consensus pattern (208 bp):
AGTGAAAGTGTGTCAGGTGGTAAAATTATTTATGCATTATCATAATAAGTAGTTTTTTTTAGTAA
CTACTAACTAGTTGTTATTACAATGTGCGATAGACTGAAGGCTGAATGTTGGAGACAAATGAGTA
ACGACGCTGGAGATCTCTGAACGTGATGGGGGTGATGTCTTTGCGAATGAGTGAATGGATGAGTA
GGGAACTGAGGCT
Found at i:69093343 original size:209 final size:209
Alignment explanation
Indices: 69092981--69093382 Score: 635
Period size: 209 Copynumber: 1.9 Consensus size: 209
69092971 ATTATTGGTA
69092981 GTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCAAAATAAATAGTTTTTTTAGTAAC
1 GTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCAAAATAAATAGTTTTTTTAGTAAC
* * * *
69093046 TACTAACTAGTTGTTATTACAATGTGCGATGAGTCTGAAGGCTGAATGTTGAAGACAAATGAATA
66 TACGAACTAATTGTTATTACAATGTGCGATGAGACTCAAGGCTGAATGTTGAAGACAAATGAATA
**
69093111 GCGATGTTGAAGGTCTCTGAGCGTGGTAGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAG
131 GCGACATTGAAGGTCTCTGAGCGTGGTAGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAG
69093176 GGGAGCTGAGGTTG
196 GGGAGCTGAGGTTG
* * *
69093190 GTGAAAGTGTGTCAGGTGGTAAATTTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAAC
1 GTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCAAAATAAATAGTTTTTTTAGTAAC
* * *
69093255 TACGAACTAATTGTTATTACAATGTGCGATGAGACTCAAGTCTGAATGTTGGAA-ATAAATGAGT
66 TACGAACTAATTGTTATTACAATGTGCGATGAGACTCAAGGCTGAATGTT-GAAGACAAATGAAT
* * * * *
69093319 AGTGACATTGGAGGTCTTTGAGCGTGGTGGGGTGTTGTCTTTGTGACTGAGTGAATGGGTGAGT
130 AGCGACATTGAAGGTCTCTGAGCGTGGTAGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGT
69093383 GGAGGAATTG
Statistics
Matches: 175, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
209 172 0.98
210 3 0.02
ACGTcount: A:0.28, C:0.08, G:0.29, T:0.34
Consensus pattern (209 bp):
GTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCAAAATAAATAGTTTTTTTAGTAAC
TACGAACTAATTGTTATTACAATGTGCGATGAGACTCAAGGCTGAATGTTGAAGACAAATGAATA
GCGACATTGAAGGTCTCTGAGCGTGGTAGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAG
GGGAGCTGAGGTTG
Found at i:69094243 original size:211 final size:209
Alignment explanation
Indices: 69093856--69094275 Score: 574
Period size: 211 Copynumber: 2.0 Consensus size: 209
69093846 ATTATTGGCA
* * * *
69093856 GTGAAAGTGTGACAAGTGGTAAAATTATTTTATGCATTATCATAATAAGTAGATTTTTTTAATAA
1 GTGAAAGTATGACAAGTGGTAAAACTATTGTATGAATTATCATAATAAGTAGATTTTTTTAATAA
69093921 CTATTAACTAGTTGTTATTACAATGTGCGATGACTGAAGGCTGAATGTCAGAGACAAATGAGCAG
66 CTATTAACTAGTTGTTATTACAATGTGCGATGACTGAAGGCTGAATGTCAGAGACAAATGAGCAG
* * *
69093986 CGACGCTGGAGGTCTCTGAACGTTGTGGGGGTGTTACCTTTGTGAATAAGTGAATGGGTGAGTAG
131 CAACGCTGGAGGTCTCTGAACGTGGTGAGGGTGTTACCTTTGTGAATAAGTGAATGGGTGAGTAG
69094051 GGGAACTGAGGTTG
196 GGGAACTGAGGTTG
* * * *
69094065 GTGAAAGTATGTCAGGTGGTAAAACTATTGTATGAATTATCATAATAAGTA-CTTTCTTTTACTA
1 GTGAAAGTATGACAAGTGGTAAAACTATTGTATGAATTATCATAATAAGTAGATTT-TTTTAATA
* **
69094129 ACTACTT-ACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGGTGAATGTTGGAGACAAATGA
65 ACTA-TTAACTAGTTGTTATTACAATGTGCGAT--GACTGAAGGCTGAATGTCAGAGACAAATGA
* * * ** * *
69094193 GCAGCAATGCTGGAGGTCTTTGAGCGTGGTGAGGGTGTTGTCTTTGTGAATGAGTGAATGGTTGA
127 GCAGCAACGCTGGAGGTCTCTGAACGTGGTGAGGGTGTTACCTTTGTGAATAAGTGAATGGGTGA
* * *
69094258 GTGGGGGAATTGTGGTTG
192 GTAGGGGAACTGAGGTTG
69094276 TAGAATTTAC
Statistics
Matches: 183, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
208 3 0.02
209 81 0.44
210 2 0.01
211 97 0.53
ACGTcount: A:0.29, C:0.10, G:0.29, T:0.33
Consensus pattern (209 bp):
GTGAAAGTATGACAAGTGGTAAAACTATTGTATGAATTATCATAATAAGTAGATTTTTTTAATAA
CTATTAACTAGTTGTTATTACAATGTGCGATGACTGAAGGCTGAATGTCAGAGACAAATGAGCAG
CAACGCTGGAGGTCTCTGAACGTGGTGAGGGTGTTACCTTTGTGAATAAGTGAATGGGTGAGTAG
GGGAACTGAGGTTG
Found at i:69094572 original size:877 final size:876
Alignment explanation
Indices: 69092111--69095772 Score: 4515
Period size: 877 Copynumber: 4.2 Consensus size: 876
69092101 AGGTTGGTGC
* * *
69092111 AAGTGTGTCAGGTGGCAAAATTATT-TATACATTATCATAATAAGTAGTTTTTTTTAGTAACTAT
1 AAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAG-TTTTTTTAGTAACTAC
* *
69092175 TAACTAGTTGTTATTACAATGTGCGATGACTGAAGGCTGAATGTTAGAGACAAATGAGTAACGAC
65 TAACTAGTTGTTATTACAATGTGCGATGACTGAAGGCTGAATGTCAGAGACAAATGAGTAACGAT
* * *
69092240 GCTGGAGATCTCTGAGCG-TGATGGGGGTGATGTCTTTGTGAATGAGTGAATGGATGAGTA-GGG
130 GCTGGAGGTCTCTGAGCGTTG-TGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAGGGG
* * *
69092303 AACTGAGGCTAGTGAAAGTGTGTCAGGTGGTAAAATGGTAAAATTATTGCATGCATTATCATAGT
194 AACTGAGGTTGGTGAAAGTGTGTCA---GG-----TGGTAAAATTATTGCATGCATTATCATAAT
* * * * *
69092368 AAGTAGTTTCTTTTTAGTAACTACTAACTAGTCGTTATTACAATGTGCAATAAAACTGAAAGCTG
251 AAGTAG-TT-TTTTTAGTAACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTG
** * * * *
69092433 AATGTTGGAGACAAATGAGTAGCGGTGCTGGATGTCTTTGAGTGTGGTAAGGGTGTTATCTTTGT
314 AATGTTGGAGACAAATGAGTAGCAATGCTGGAGGTCTTTGAGCGTGGTGAGGGTGTTGTCTTTGT
* * * *
69092498 G-A--A-TG---GG-TGAGTGGGGGAATTGAGGTTGTAGTATTTGCAGAAGGTAAATAAGTGAAA
379 GAATGAGTGAATGGTTGAGTGGGGGAATTGAGGTTGTAGAATTTGCAGAAGGTAGAGAAGCGAAA
* * * * * *
69092555 AGTAGCAGTGGCTACTAAAGACTGGCGAAGAAGAAGAAACTAAGCAGAAGGTAAAAAGGCAACAA
444 AGTAGCAGCGGCAACTAACGACTAGCGAAGAAGCAGAAACTAAGCAGAAGGTAAAAAAGCAACAA
* * * * * * * *
69092620 TGACGGCAATGACAAC-AAAAAAACGAAAAGTA-AAAAAAAACAGAGAAGCAACGATAGTGGCAA
509 TGGCAGCAATGACAACGAAACAAACGAAAAGCAGTAAAAAGACAGAGAAGCAACAATGGTGGCAA
* *
69092683 CA-CAAAGAAGTAATAAATAAGGAAAAATTTAAGGATCAGGGATTAAGGAAGGAAAAATA-AGGA
574 CACCAAAGAAGCAATAAATAAGGAAAAATTTAAGGATTAGGGATTAAGGAAGGAAAAATAGA-GA
* * *
69092746 TTGGGAAGAGAAAGGGGAATATAAAGACTGGGTCAGCTGGGAAGTGTGAACAAGGGAAAAAACTT
638 TTGGGAAGAGAAAAGGGAATATAAAGACTAGGTCAGCTGGGAAGTGGGAACAAGGG-AAAAACTT
* * *
69092811 TTAAGTTAATAAAATCGGGCTGGGCTTGGGTTGAAAAATCCTCATTCGAAGCCTGACCAATTTTT
702 TTAGGTTAATAAAATCGGGCTGGGCTTGGGTTGAAAAATCCTCACTCGAAGCCCGACCAATTTTT
* *
69092876 AAAATAGACTGGTAGTGCAATACATACAATAATTCTCTATGAAAAAAATTCACTAAAACCCAGAA
767 AAAATAGACTGGTAGTGCAATACATACAATAAATCTCTATGAAAAAAATTCACTAAAACCAAGAA
* * *
69092941 AAAT-AGATCATATTATATTCTACATTAAAGATTATTGGTAGTGA
832 AAATGAGATCATATTATATTCCACAGTAAAGATTATTGGCAGTGA
* *
69092985 AAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCAAAATAAATAGTTTTTTTAGTAACTACT
1 AAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAACTACT
* * *
69093050 AACTAGTTGTTATTACAATGTGCGATGAGTCTGAAGGCTGAATGT-TGAAGACAAATGAATAGCG
66 AACTAGTTGTTATTACAATGTGCGATGA--CTGAAGGCTGAATGTCAG-AGACAAATGAGTAACG
* * * *
69093114 ATGTTGAAGGTCTCTGAGCGTGGT-AGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAGGG
128 ATGCTGGAGGTCTCTGAGCGTTGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAGGG
* * *
69093178 GAGCTGAGGTTGGTGAAAGTGTGTCAGGTGGTAAATTTATTGTATGCATTATCATAATAAGTAGT
193 GAACTGAGGTTGGTGAAAGTGTGTCAGGTGGTAAAATTATTGCATGCATTATCATAATAAGTAGT
* * * *
69093243 TTTTTTAGTAACTACGAACTAATTGTTATTACAATGTGCGATGAGACTCAAGTCTGAATGTTGGA
258 TTTTTTAGTAACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGA
* * * *
69093308 AATAAATGAGTAGTGACAT--TGGAGGTCTTTGAGCGTGGTG-GGGTGTTGTCTTTGTGACTGAG
323 GACAAATGAGTAG-CA-ATGCTGGAGGTCTTTGAGCGTGGTGAGGGTGTTGTCTTTGTGAATGAG
* * * *
69093370 TGAATGGGTGAGTGGAGGAATTGAGGTTGTAGAATTTGCAGAAGGTGGAGAAGCGAAAAGTAGTA
386 TGAATGGTTGAGTGGGGGAATTGAGGTTGTAGAATTTGCAGAAGGTAGAGAAGCGAAAAGTAGCA
* *
69093435 GCGGCAACTAACGACTAGCGAAGAAGTAGAAACTAAGCAGAAGGTAAAAAAGTAACAATGGCAGC
451 GCGGCAACTAACGACTAGCGAAGAAGCAGAAACTAAGCAGAAGGTAAAAAAGCAACAATGGCAGC
* * * * * *
69093500 AATAACAACGAAA-TAACTGAAAACCAATAAAAAGA-AGAGAA-TAACAATGGTGGCAACACCGA
516 AATGACAACGAAACAAAC-GAAAAGCAGTAAAAAGACAGAGAAGCAACAATGGTGGCAACACCAA
* * *
69093562 AGAAGCAATAAATAAGGAAAAATTTAAGGATTAGGGATTAAAGAA-GAGAAAATAGGGATTGGAA
580 AGAAGCAATAAATAAGGAAAAATTTAAGGATTAGGGATTAAGGAAGGA-AAAATAGAGATTGGGA
* * * * * * * * *
69093626 AGGGAAAGGGGAATATCAAGACTGGGTCTGTTGGGAAGTGGGAACAACGGTAAACCTTTTAGGTT
644 AGAGAAAAGGGAATATAAAGACTAGGTCAGCTGGGAAGTGGGAACAAGGGAAAAACTTTTAGGTT
* * * *
69093691 AATAAAATCGGGCTGGGCATGGGTTGAAAAATCCTTACTCGAAGCCCGACCCATTTTTAAAACAG
709 AATAAAATCGGGCTGGGCTTGGGTTGAAAAATCCTCACTCGAAGCCCGACCAATTTTTAAAATAG
** * *
69093756 ACTGGTAGTGCAATATTTACAATAAATCTCTATGAAAATAAATTTTA-TTAAACCAAGAAAAATG
774 ACTGGTAGTGCAATACATACAATAAATCTCTATGAAAA-AAA-TTCACTAAAACCAAGAAAAATG
* * * *
69093820 AGATCATTTTACATTCCGCGGTAAAGATTATTGGCAGTGA
837 AGATCATATTATATTCCACAGTAAAGATTATTGGCAGTGA
* * * * *
69093860 AAGTGTGACAAGTGGTAAAATTATTTTATGCATTATCATAATAAGTAGATTTTTTTAATAACTAT
1 AAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAG-TTTTTTTAGTAACTAC
* * *
69093925 TAACTAGTTGTTATTACAATGTGCGATGACTGAAGGCTGAATGTCAGAGACAAATGAGCAGCGAC
65 TAACTAGTTGTTATTACAATGTGCGATGACTGAAGGCTGAATGTCAGAGACAAATGAGTAACGAT
* ** *
69093990 GCTGGAGGTCTCTGAACGTTGTGGGGGTGTTACCTTTGTGAATAAGTGAATGGGTGAGTAGGGGA
130 GCTGGAGGTCTCTGAGCGTTGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAGGGGA
* * * * *
69094055 ACTGAGGTTGGTGAAAGTATGTCAGGTGGTAAAACTATTGTATGAATTATCATAATAAGTACTTT
195 ACTGAGGTTGGTGAAAGTGTGTCAGGTGGTAAAATTATTGCATGCATTATCATAATAAGTAGTTT
* * *
69094120 CTTTTACTAACTACTTACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGGTGAATGTTGGAG
260 -TTTTAGTAACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAG
*
69094185 ACAAATGAGCAGCAATGCTGGAGGTCTTTGAGCGTGGTGAGGGTGTTGTCTTTGTGAATGAGTGA
324 ACAAATGAGTAGCAATGCTGGAGGTCTTTGAGCGTGGTGAGGGTGTTGTCTTTGTGAATGAGTGA
* * * * * *
69094250 ATGGTTGAGTGGGGGAATTGTGGTTGTAGAATTTACAGAAGGTAGAGAACCAAAAAGCAGCAACG
389 ATGGTTGAGTGGGGGAATTGAGGTTGTAGAATTTGCAGAAGGTAGAGAAGCGAAAAGTAGCAGCG
* * * * * *
69094315 ACAATTAAC-AGCTAGTGAAGAAGCAGAAACTTAGCAGAAGGTAAAAGAGCAACAATGGTAGCAA
454 GCAACTAACGA-CTAGCGAAGAAGCAGAAACTAAGCAGAAGGTAAAAAAGCAACAATGGCAGCAA
* * *
69094379 TGACAACGAAACTAATGAAAAGCAGTAAAAGGA-AGAGAAGCAACAATGGTGGCAACACCAAAGA
518 TGACAACGAAACAAACGAAAAGCAGTAAAAAGACAGAGAAGCAACAATGGTGGCAACACCAAAGA
* *
69094443 AGCAGTAAATGAGGAAAAATTTAAGGATTAGGGATTAAGGAATGG-AAAATAGAGATT-GGAAGA
583 AGCAATAAATAAGGAAAAATTTAAGGATTAGGGATTAAGGAA-GGAAAAATAGAGATTGGGAAGA
* * * * *
69094506 GAAAAGGGAATATCAACACTAGGTCTGCTAGGAAGTGGGAACAAGGGTAAAA-TTTCTAGGTTAA
647 GAAAAGGGAATATAAAGACTAGGTCAGCTGGGAAGTGGGAACAAGGGAAAAACTTT-TAGGTTAA
* * * * * * * *
69094570 TAAAATTGAGCTAGGCCTAGGTTGAAAAATCC-CTGCTCGAAGCCCGACCCATTTTTAAAATGGA
711 TAAAATCGGGCTGGGCTTGGGTTGAAAAATCCTC-ACTCGAAGCCCGACCAATTTTTAAAATAGA
* * *
69094634 TTGGTAGTGCAATATATACAATGAATCTCTATGAAAAAAATTCTA-TAAAACCAAGAAAAATGAG
775 CTGGTAGTGCAATACATACAATAAATCTCTATGAAAAAAATTC-ACTAAAACCAAGAAAAATGAG
* * *
69094698 ATTATTTTATATTCCACAGTAAAGATTATTGGCATTGA
839 ATCATATTATATTCCACAGTAAAGATTATTGGCAGTGA
* * *
69094736 AAGTGTGTTAGGTGGTAAAATTATTGTATGCATTATTATAATAAGTAGTTATTTTAGTAACTACT
1 AAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAACTACT
*
69094801 AACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTCGGAGACAAATGAGTAACGA
66 AACTAGTTGTTATTACAATGTGCGAT--GACTGAAGGCTGAATGTCAGAGACAAATGAGTAACGA
* * * * *
69094866 TGCTAGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGGGTGAATGGGTAAATAGGGG
129 TGCTGGAGGTCTCTGAGCGTTGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAGGGG
* * * *
69094931 AACTGAGGTTGGTGCAAGTGTGTCAGGTGGCAAAATTATTGCATGCATTATGATAATGAGTAGTT
194 AACTGAGGTTGGTGAAAGTGTGTCAGGTGGTAAAATTATTGCATGCATTATCATAATAAGTAGTT
* * * *
69094996 TTTCTTAGTAACTACTAACTAGCTATTATTACAATATGCGATGAGACTGAAGGTTGAATGTTGGA
259 TTT-TTAGTAACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGA
* ** * * *
69095061 GACAAATGAGTAGCGATGCTAAAGGTCTCTGATCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTG
323 GACAAATGAGTAGCAATGCTGGAGGTCTTTGAGCGTGGTGAGGGTGTTGTCTTTGTGAATGAGTG
* * * * * *
69095126 AATGGTTAAGTGGGGAAACTAAGGTTG--G----TG-A-AA-GT-GTG--TC---AAGT------
388 AATGGTTGAGTGGGGGAATTGAGGTTGTAGAATTTGCAGAAGGTAGAGAAGCGAAAAGTAGCAGC
* * * * * *
69095170 GGTAAGTAACGACTAGCAAAGAAGCAGAAACTAAGCAGAAGGTAAAAAAGAAACAATAGCGGCAA
453 GGCAACTAACGACTAGCGAAGAAGCAGAAACTAAGCAGAAGGTAAAAAAGCAACAATGGCAGCAA
** * *
69095235 TGACAGTGAAACAAACGAAAAGCAGT-ATAAGACAGAGAAGCAACAATGGTGGCGACACCAAAGA
518 TGACAACGAAACAAACGAAAAGCAGTAAAAAGACAGAGAAGCAACAATGGTGGCAACACCAAAGA
* *
69095299 AGTAATAAATAAGGAAAAATTTAAGGATTAGGGATTAAGGAAGGAAAAATAGGGATTGGGAAG-G
583 AGCAATAAATAAGGAAAAATTTAAGGATTAGGGATTAAGGAAGGAAAAATAGAGATTGGGAAGAG
*
69095363 GAAAGGAGAATATAAAGACTAGGTCAGCTGGGAAGTGGGAACAAGGGAAAAACTTTTAGGTTAAT
648 AAAAGG-GAATATAAAGACTAGGTCAGCTGGGAAGTGGGAACAAGGGAAAAACTTTTAGGTTAAT
* ** ** *
69095428 AAAATTGGGCTGGGCTTGGGTTGAAAAATCCTCGTTCGAAGCTTGACCAATTTTTAAAATGGACT
712 AAAATCGGGCTGGGCTTGGGTTGAAAAATCCTCACTCGAAGCCCGACCAATTTTTAAAATAGACT
* * * * *
69095493 GGTATTACAATACATACAATAATTCTCTATGAAAAAAATTCACCAAAACCCAGAAAAATGAGATC
777 GGTAGTGCAATACATACAATAAATCTCTATGAAAAAAATTCACTAAAACCAAGAAAAATGAGATC
69095558 ATATTATATTCCACAGTAAAGATTATTGGCAGTGA
842 ATATTATATTCCACAGTAAAGATTATTGGCAGTGA
* * *
69095593 AAGTGTGTTA-GTGGTAAAATTATTGTATGAATTATCATAATAAGTAGTTATTTTAGTAACTACT
1 AAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAACTACT
* ** *
69095657 AACTAGTTGTTATTACAATGTGCAATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGCAACGA
66 AACTAGTTGTTATTACAATGTGCGAT--GACTGAAGGCTGAATGTCAGAGACAAATGAGTAACGA
* * * *
69095722 TGCTGGAGGACTCTGAGC-TTGGTGGGGGTGCTGTCTTTGTGCATAAGTGAA
129 TGCTGGAGGTCTCTGAGCGTT-GTGGGGGTGTTGTCTTTGTGAATGAGTGAA
69095773 AAGTTGAGTG
Statistics
Matches: 2431, Mismatches: 305, Indels: 122
0.85 0.11 0.04
Matches are distributed among these distances:
855 7 0.00
856 317 0.13
857 207 0.09
858 4 0.00
862 3 0.00
865 16 0.01
866 84 0.03
867 4 0.00
868 37 0.02
869 4 0.00
870 1 0.00
871 1 0.00
872 2 0.00
873 241 0.10
874 251 0.10
875 281 0.12
876 305 0.13
877 590 0.24
878 75 0.03
880 1 0.00
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.27
Consensus pattern (876 bp):
AAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAACTACT
AACTAGTTGTTATTACAATGTGCGATGACTGAAGGCTGAATGTCAGAGACAAATGAGTAACGATG
CTGGAGGTCTCTGAGCGTTGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAGGGGAA
CTGAGGTTGGTGAAAGTGTGTCAGGTGGTAAAATTATTGCATGCATTATCATAATAAGTAGTTTT
TTTAGTAACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGAC
AAATGAGTAGCAATGCTGGAGGTCTTTGAGCGTGGTGAGGGTGTTGTCTTTGTGAATGAGTGAAT
GGTTGAGTGGGGGAATTGAGGTTGTAGAATTTGCAGAAGGTAGAGAAGCGAAAAGTAGCAGCGGC
AACTAACGACTAGCGAAGAAGCAGAAACTAAGCAGAAGGTAAAAAAGCAACAATGGCAGCAATGA
CAACGAAACAAACGAAAAGCAGTAAAAAGACAGAGAAGCAACAATGGTGGCAACACCAAAGAAGC
AATAAATAAGGAAAAATTTAAGGATTAGGGATTAAGGAAGGAAAAATAGAGATTGGGAAGAGAAA
AGGGAATATAAAGACTAGGTCAGCTGGGAAGTGGGAACAAGGGAAAAACTTTTAGGTTAATAAAA
TCGGGCTGGGCTTGGGTTGAAAAATCCTCACTCGAAGCCCGACCAATTTTTAAAATAGACTGGTA
GTGCAATACATACAATAAATCTCTATGAAAAAAATTCACTAAAACCAAGAAAAATGAGATCATAT
TATATTCCACAGTAAAGATTATTGGCAGTGA
Found at i:69095100 original size:211 final size:210
Alignment explanation
Indices: 69094733--69095171 Score: 673
Period size: 211 Copynumber: 2.1 Consensus size: 210
69094723 TTATTGGCAT
* * * *
69094733 TGAAAGTGTGTTAGGTGGTAAAATTATTGTATGCATTATTATAATAAGTAGTTATTTTAGTAACT
1 TGAAAGTGTGTCAGGTGGCAAAATTATTGCATGCATTATGATAATAAGTAGTTATTTTAGTAACT
* * *
69094798 ACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTCGGAGACAAATGAGTAA
66 ACTAACTAGCTATTATTACAATATGCGATGAGACTGAAGGCTGAATGTCGGAGACAAATGAGTAA
* *
69094863 CGATGCTAGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGGGTGAATGGGTAAATAG
131 CGATGCTAAAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTAAAT-G
*
69094928 GGG-AACTGAGGTTGG
195 GGGAAACTAAGGTTGG
* * *
69094943 TGCAAGTGTGTCAGGTGGCAAAATTATTGCATGCATTATGATAATGAGTAGTTTTTCTTAGTAAC
1 TGAAAGTGTGTCAGGTGGCAAAATTATTGCATGCATTATGATAATAAGTAGTTATT-TTAGTAAC
* *
69095008 TACTAACTAGCTATTATTACAATATGCGATGAGACTGAAGGTTGAATGTTGGAGACAAATGAGTA
65 TACTAACTAGCTATTATTACAATATGCGATGAGACTGAAGGCTGAATGTCGGAGACAAATGAGTA
* * * *
69095073 GCGATGCTAAAGGTCTCTGATCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGTTAAGTG
130 ACGATGCTAAAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTAAATG
69095138 GGGAAACTAAGGTTGG
195 GGGAAACTAAGGTTGG
*
69095154 TGAAAGTGTGTCAAGTGG
1 TGAAAGTGTGTCAGGTGG
69095172 TAAGTAACGA
Statistics
Matches: 206, Mismatches: 21, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
210 53 0.26
211 153 0.74
ACGTcount: A:0.28, C:0.09, G:0.31, T:0.32
Consensus pattern (210 bp):
TGAAAGTGTGTCAGGTGGCAAAATTATTGCATGCATTATGATAATAAGTAGTTATTTTAGTAACT
ACTAACTAGCTATTATTACAATATGCGATGAGACTGAAGGCTGAATGTCGGAGACAAATGAGTAA
CGATGCTAAAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTAAATGG
GGAAACTAAGGTTGG
Found at i:69096622 original size:210 final size:210
Alignment explanation
Indices: 69096272--69096650 Score: 607
Period size: 210 Copynumber: 1.8 Consensus size: 210
69096262 TGTTAGGTGG
*
69096272 TAAAATTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTAACTGCTAACTAGTTGTTATTA
1 TAAAATTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTAACTACTAACTAGTTGTTATTA
* ** * *
69096337 CAATGTGCGATGAGACTGAAGGCTGAATGTTGGGGACAAATGAGTAGTGACGCTGGAGGTCTGTG
66 CAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAACAGCGACGCTGGAGGTCTCTG
* * * * *
69096402 AGCGTGGTGGGGGTGTTGTCTTTGTTATTGGGTGAATGGTTGTGTAGGGGAACTGTGGTTGGTGT
131 AGCATGGTGGGGGTGTTCTCTTTGTGAATGAGTGAATGGTTGTGTAGGGGAACTGTGGTTGGTGT
69096467 AAGTGTGTCAAGTTC
196 AAGTGTGTCAAGTTC
69096482 TAAAATTATTGTATGCATTATCATAATAAGTAGTT-TTTATAGTAACTACTAACTAGTTGTTATT
1 TAAAATTATTGTATGCATTATCATAATAAGTAGTTATTT-TAGTAACTACTAACTAGTTGTTATT
* * *
69096546 ACAATGTGCGCTGAGACTGAAGGCTGATTGTTGGAGACAAATGAACAGCGATGCTGGAGGTCTCT
65 ACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAACAGCGACGCTGGAGGTCTCT
*
69096611 GAGCATGGTGGGGTTGTTCTCTTTGTGAATGAGTGAATGG
130 GAGCATGGTGGGGGTGTTCTCTTTGTGAATGAGTGAATGG
69096651 GTGAATGGGG
Statistics
Matches: 153, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
209 3 0.02
210 150 0.98
ACGTcount: A:0.26, C:0.10, G:0.29, T:0.35
Consensus pattern (210 bp):
TAAAATTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTAACTACTAACTAGTTGTTATTA
CAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAACAGCGACGCTGGAGGTCTCTG
AGCATGGTGGGGGTGTTCTCTTTGTGAATGAGTGAATGGTTGTGTAGGGGAACTGTGGTTGGTGT
AAGTGTGTCAAGTTC
Found at i:69097387 original size:877 final size:871
Alignment explanation
Indices: 69095589--69097752 Score: 2944
Period size: 877 Copynumber: 2.5 Consensus size: 871
69095579 ATTATTGGCA
*
69095589 GTGAAAGTGTGTTAGTGGTAAAATTATTGTATGA-ATTATCATAATAAGTAGTTATTTTAGTAAC
1 GTGAAAGTGTGTCAGTGGTAAAATTATTGTAT-ACATTATCATAATAAGTAGTT-TTTTAGTAAC
*
69095653 TACTAACTAGTTGTTATTACAATGTGCAATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGCA
64 TACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGCA
* * * * * * * ** *
69095718 ACGATGCTGGAGGACTCTGAGCTTGGTGGGGGTGCTGTCTTTGTGCATAAGTGAAAAGTTGAGTG
129 GCGATGCTGGAGGTCTCTGAGCATGGTGGGGTTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTG
** * * * * * ** *
69095783 GGGGATTTGAGGTTGCAGAATTTATAGGAGGTAGAGAAGCGAAAAGTAGCAGCGACAATTAACAA
194 GGGGAACTGAGGTTGTAGAATTTAAAGAAGGTAGAGAAGTGAAAA-TAGTAGCG-GGACTAACAA
* * * * * * * *
69095848 CTGGCAAAGAAGCAGAAATTAAGCAAAAGGTAAAAGAGGAACAATGGCGGGAATGACAATGAAAC
257 CTGGCGAAGAAGTAGAAACTAAGTAGAAGGTAAAAAAGCAACAATGGCGGGAATGACAACGAAAC
* * *
69095913 AAATGAAAAGCAGCAAAAGGAAGCAAAGTAACAATGGTGGCAACACTAAAGAAGCAGTAAATAAG
322 AAATGAAAAGCAGCAAAAGGAAG-AAAGCAACAATGGTGGCAACACCAAAGAAGCAATAAATAAG
* *
69095978 G-AAAATCTAAGGATTAGGGATTAAGGAAGGGAGAATAGGGATTGGAAAGGGAAAAGGGAATATC
386 GAAAAATTTAAGGATTAGGGATTAAGGAAGGGAAAATAGGGATTGGAAAGGGAAAAGGGAATATC
* * * * *
69096042 AACATTGGGTCTGCTGGGAAGTGTAAACAAGGGTCAATTTTCTAAGCTAATAAAATTGAGCTGGG
451 AACACTGGGTCTACTGGGAAGTGGAAACAAGGGTAAACTTTCTAAGCTAATAAAATTGAGCTGGG
* * * * * *
69096107 CCTAGGTTGAAAAATCTTTGCTTGAAGCTCGGCCCATTTTTAAAACGGGCTAGTAATACAATATA
516 CCTAGGTTGAAAAATCCTAGCTCGAAGCTCGACCCATTTTTAAAACGGACTAGTAATACAATACA
*
69096172 TACAATGAATCTCTATGAAAAAATTCTATAAAACCAAGAAAAATGAGATTATTTTATATTCCACA
581 TACAATGAATCTCTATGAAAAAATTCTATAAAACCAAGAAAAATGAGATCATTTTATATTCCACA
* * * * *
69096237 GTAAAGATAATTGGCATTGAAAGTGTGTTAGGTGGTAAAATTATTGTATGCATTATCATAATAAG
646 GTAAAGATAATTGGCAGTGAAAGTGCGTCAGGTGGTAAAATTATTGTATACATTATCAAAATAAG
* *
69096302 TAGTTATTTTAGTAACTGCTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGT
711 TAGTTATTTTAGTAACTACAAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGT
* * * * * * * * *
69096367 TGGGGACAAATGAGTAGTGACGCTGGAGGTCTGTGAGCGTGGTGGGGGTGTTGTCTTTGTTATTG
776 TGGAGACAAATAAGCAGCGACGCTAGAGGTCTCTGAGCATGGTGGGGGTGTTGTCTTTGTGAATG
* * *
69096432 GGTGAATGGTTGTGTAGGGGAACTGTGGTTG
841 AGTGAATGGTTGAGTAGGGGAACTGTGCTTG
* ** *
69096463 GTGTAAGTGTGTCAAGTTCTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTATAGTAAC
1 GTGAAAGTGTGTC-AGTGGTAAAATTATTGTATACATTATCATAATAAGTAGTTTTT-TAGTAAC
* * *
69096528 TACTAACTAGTTGTTATTACAATGTGCGCTGAGACTGAAGGCTGATTGTTGGAGACAAATGAACA
64 TACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGCA
* *
69096593 GCGATGCTGGAGGTCTCTGAGCATGGTGGGGTTGTTCTCTTTGTGAATGAGTGAATGGGTGAATG
129 GCGATGCTGGAGGTCTCTGAGCATGGTGGGGTTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTG
* *
69096658 GGGGAACTGAGGTTGTAGAATTTAAAGAAGGTAGAGAAGTGATAAATAGTAGCTGGGACGAACGA
194 GGGGAACTGAGGTTGTAGAATTTAAAGAAGGTAGAGAAGTGA-AAATAGTAGC-GGGACTAACAA
* * *
69096723 CTGGCGAAGAAGTAGAAACTAAATAGAAGGTAAAAAAGCAACAATGGCGGTAATGACAACGAAAA
257 CTGGCGAAGAAGTAGAAACTAAGTAGAAGGTAAAAAAGCAACAATGGCGGGAATGACAACGAAAC
* **
69096788 AAATGAAAAGCAGCAAAAGGCAGAGAAGCAACAACAGTGGCAACACCAAAGAAGCAATAAATAAG
322 AAATGAAAAGCAGCAAAAGGAAGA-AAGCAACAATGGTGGCAACACCAAAGAAGCAATAAATAAG
* *
69096853 GAAAAATTTAAGGATTAGGGATTAAGGAAGGGAAAATACGGG-TTGGAAAGGGAAAGGGGTATAT
386 GAAAAATTTAAGGATTAGGGATTAAGGAAGGGAAAATA-GGGATTGGAAAGGGAAAAGGGAATAT
* * * * *
69096917 CAAGACTGGGTCTACTGGGAAGTGGGAACAAGGGTAAAACTTT-TAGGTTAATAAAATTG-GTTT
450 CAACACTGGGTCTACTGGGAAGTGGAAACAAGGGT-AAACTTTCTAAGCTAATAAAATTGAG-CT
* * ** * * *
69096980 GGGCTTGGGTTGAAAAATCCTAGCTCGAAGC-CTGACCCATTTTTAAATTGGACTGGTAGTGCAA
513 GGGCCTAGGTTGAAAAATCCTAGCTCGAAGCTC-GACCCATTTTTAAAACGGACTAGTAATACAA
69097044 TACATACAAT-AATTCTCTATGAAAAAAATTCTATAAAACCAAGAAAAATGAGATCATTTTATAT
577 TACATACAATGAA-TCTCTATG-AAAAAATTCTATAAAACCAAGAAAAATGAGATCATTTTATAT
*
69097108 TCCACAGTAAAGA-ATATTGGCAGTGAAAGTGCGTCAGGTGGTGAAATTATTGTATACATTATCA
640 TCCACAGTAAAGATA-ATTGGCAGTGAAAGTGCGTCAGGTGGTAAAATTATTGTATACATTATCA
*
69097172 AAATAAGTAGTTTTTTTAGTAACTACAAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGC
704 AAATAAGTAGTTATTTTAGTAACTACAAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGC
* *
69097237 TGAATGTTGGAGACAAATAAGCAGCGATGCTAGAGGTCTCTGAGCATGGTGGGGGTGTTGTGTTT
769 TGAATGTTGGAGACAAATAAGCAGCGACGCTAGAGGTCTCTGAGCATGGTGGGGGTGTTGTCTTT
* *
69097302 GTGAATGAGTGATTGGTTGAGTGGGGGAACTGAT-CTTG
834 GTGAATGAGTGAATGGTTGAGTAGGGGAACTG-TGCTTG
* *
69097340 GTGAAAGTGTGTCAGGTGGTAAAATTATTGTATACATTATTATAATAAGTAGGTTTTTTAATAAC
1 GTGAAAGTGTGTCA-GTGGTAAAATTATTGTATACATTATCATAATAAGTA-GTTTTTTAGTAAC
* * *
69097405 TACTAACTAGTTGTTATTACAATGTACGATGAGACTGAAGGCTGAATATTGGAGACAAATGAGTA
64 TACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGCA
* * *
69097470 GCGATGTTGGAGGTCTCTGATCGTGGTGGGGTTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTG
129 GCGATGCTGGAGGTCTCTGAGCATGGTGGGGTTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTG
** * **
69097535 GGGGAACTGA-GTTCGTAGAATTTGCAGAAGGTAGAGAGGTGAAAAGTAACAGCGGCGACTAACA
194 GGGGAACTGAGGTT-GTAGAATTTAAAGAAGGTAGAGAAGTGAAAA-TAGTAGCGG-GACTAACA
* * *
69097599 ACTGGCGAAGAAGTAGAAAGTAAGTAGAAGGTAAAAAAGCAATAATGGCGGGAATGACAACGGAA
256 ACTGGCGAAGAAGTAGAAACTAAGTAGAAGGTAAAAAAGCAACAATGGCGGGAATGACAACGAAA
* * *
69097664 CAAATGAAAAGCAGCAAAAGGAAAAAAAGCAACAATGGCGGCAACACCGAAGAAGCAATAAATAA
321 CAAATGAAAAGCAGCAAAAGG-AAGAAAGCAACAATGGTGGCAACACCAAAGAAGCAATAAATAA
69097729 GGAAAAATTTAAGGATTAGGGATT
385 GGAAAAATTTAAGGATTAGGGATT
69097753 GTCGTAACCA
Statistics
Matches: 1130, Mismatches: 139, Indels: 39
0.86 0.11 0.03
Matches are distributed among these distances:
874 15 0.01
875 320 0.28
876 180 0.16
877 606 0.54
878 9 0.01
ACGTcount: A:0.36, C:0.10, G:0.27, T:0.26
Consensus pattern (871 bp):
GTGAAAGTGTGTCAGTGGTAAAATTATTGTATACATTATCATAATAAGTAGTTTTTTAGTAACTA
CTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGCAGC
GATGCTGGAGGTCTCTGAGCATGGTGGGGTTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTGGG
GGAACTGAGGTTGTAGAATTTAAAGAAGGTAGAGAAGTGAAAATAGTAGCGGGACTAACAACTGG
CGAAGAAGTAGAAACTAAGTAGAAGGTAAAAAAGCAACAATGGCGGGAATGACAACGAAACAAAT
GAAAAGCAGCAAAAGGAAGAAAGCAACAATGGTGGCAACACCAAAGAAGCAATAAATAAGGAAAA
ATTTAAGGATTAGGGATTAAGGAAGGGAAAATAGGGATTGGAAAGGGAAAAGGGAATATCAACAC
TGGGTCTACTGGGAAGTGGAAACAAGGGTAAACTTTCTAAGCTAATAAAATTGAGCTGGGCCTAG
GTTGAAAAATCCTAGCTCGAAGCTCGACCCATTTTTAAAACGGACTAGTAATACAATACATACAA
TGAATCTCTATGAAAAAATTCTATAAAACCAAGAAAAATGAGATCATTTTATATTCCACAGTAAA
GATAATTGGCAGTGAAAGTGCGTCAGGTGGTAAAATTATTGTATACATTATCAAAATAAGTAGTT
ATTTTAGTAACTACAAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAG
ACAAATAAGCAGCGACGCTAGAGGTCTCTGAGCATGGTGGGGGTGTTGTCTTTGTGAATGAGTGA
ATGGTTGAGTAGGGGAACTGTGCTTG
Found at i:69097499 original size:210 final size:210
Alignment explanation
Indices: 69097130--69097544 Score: 659
Period size: 210 Copynumber: 2.0 Consensus size: 210
69097120 AATATTGGCA
* * *
69097130 GTGAAAGTGCGTCAGGTGGTGAAATTATTGTATACATTATCAAAATAAGTAGTTTTTTTAGTAAC
1 GTGAAAGTGCGTCAGGTGGTAAAATTATTGTATACATTATCAAAATAAGTAGGTTTTTTAATAAC
* *
69097195 TACAAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATAAGCA
66 TACAAACTAGTTGTTATTACAATGTACGATGAGACTGAAGGCTGAATATTGGAGACAAATAAGCA
* * *
69097260 GCGATGCTAGAGGTCTCTGAGCATGGTGGGGGTGTTGTGTTTGTGAATGAGTGATTGGTTGAGTG
131 GCGATGCTAGAGGTCTCTGAGCATGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTG
69097325 GGGGAACTGATCTTG
196 GGGGAACTGATCTTG
* * *
69097340 GTGAAAGTGTGTCAGGTGGTAAAATTATTGTATACATTATTATAATAAGTAGGTTTTTTAATAAC
1 GTGAAAGTGCGTCAGGTGGTAAAATTATTGTATACATTATCAAAATAAGTAGGTTTTTTAATAAC
* * *
69097405 TACTAACTAGTTGTTATTACAATGTACGATGAGACTGAAGGCTGAATATTGGAGACAAATGAGTA
66 TACAAACTAGTTGTTATTACAATGTACGATGAGACTGAAGGCTGAATATTGGAGACAAATAAGCA
* * * * *
69097470 GCGATGTTGGAGGTCTCTGATCGTGGTGGGGTTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTG
131 GCGATGCTAGAGGTCTCTGAGCATGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTG
69097535 GGGGAACTGA
196 GGGGAACTGA
69097545 GTTCGTAGAA
Statistics
Matches: 186, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
210 186 1.00
ACGTcount: A:0.28, C:0.09, G:0.30, T:0.33
Consensus pattern (210 bp):
GTGAAAGTGCGTCAGGTGGTAAAATTATTGTATACATTATCAAAATAAGTAGGTTTTTTAATAAC
TACAAACTAGTTGTTATTACAATGTACGATGAGACTGAAGGCTGAATATTGGAGACAAATAAGCA
GCGATGCTAGAGGTCTCTGAGCATGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTG
GGGGAACTGATCTTG
Found at i:69098961 original size:33 final size:38
Alignment explanation
Indices: 69098919--69099000 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 38
69098909 GTAAAAACAC
69098919 AATAGTAATAATAATGA-AA-A-GGTATTA-TAAT-AT
1 AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
*
69098952 AATAGTAATAATGATGATAATAGTGGTATTAGTAATAAT
1 AATAGTAATAATAATGATAATAG-GGTATTAGTAATAAT
*
69098991 AATAATAATA
1 AATAGTAATA
69099001 GAAAATAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 1 0.02
37 7 0.17
38 4 0.10
39 11 0.27
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.34
Consensus pattern (38 bp):
AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
Found at i:69099009 original size:19 final size:18
Alignment explanation
Indices: 69098985--69099026 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
69098975 TGGTATTAGT
*
69098985 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
69099004 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
69099022 AATAA
1 AATAA
69099027 CACTCTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:69100940 original size:60 final size:58
Alignment explanation
Indices: 69100866--69100998 Score: 151
Period size: 60 Copynumber: 2.3 Consensus size: 58
69100856 ATTTAAGCCC
* * * * *
69100866 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCC--ATATATTTCCAGCAT
* * **
69100926 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
69100984 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
69100999 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
58 28 0.44
60 34 0.54
61 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.28
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:69100956 original size:29 final size:29
Alignment explanation
Indices: 69100916--69100998 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
69100906 GCCGTATTTT
69100916 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
69100945 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
69100974 TTTCCAGCATGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
69100999 ATCTCGTCAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:69102644 original size:15 final size:15
Alignment explanation
Indices: 69102624--69102653 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
69102614 CACAAGTGTT
69102624 TGTACATATAATGGG
1 TGTACATATAATGGG
69102639 TGTACATATAATGGG
1 TGTACATATAATGGG
69102654 CATCAACTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (15 bp):
TGTACATATAATGGG
Found at i:69108615 original size:48 final size:49
Alignment explanation
Indices: 69108545--69108650 Score: 198
Period size: 48 Copynumber: 2.2 Consensus size: 49
69108535 CAGTAAGTCN
69108545 GCCTAATGG-CGATGTGGTGAATGTGAAAGTGTATGTATATGTGAT-AG
1 GCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAG
69108592 GCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAG
1 GCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAG
69108641 GCCTAATGGC
1 GCCTAATGGC
69108651 TAATGTAAAA
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
47 9 0.16
48 36 0.63
49 12 0.21
ACGTcount: A:0.27, C:0.09, G:0.33, T:0.30
Consensus pattern (49 bp):
GCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAG
Found at i:69108798 original size:35 final size:36
Alignment explanation
Indices: 69108752--69108833 Score: 139
Period size: 35 Copynumber: 2.3 Consensus size: 36
69108742 GGAATATGTT
*
69108752 CCGGGTGAGACCGATGACTACGTGTGGAGATT-TGA
1 CCGGGTAAGACCGATGACTACGTGTGGAGATTATGA
*
69108787 CCGGGTAAGACCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCGATGACTACGTGTGGAGATTATGA
69108823 CCGGGTAAGAC
1 CCGGGTAAGAC
69108834 TTCTTTTATA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
35 31 0.70
36 13 0.30
ACGTcount: A:0.24, C:0.18, G:0.35, T:0.22
Consensus pattern (36 bp):
CCGGGTAAGACCGATGACTACGTGTGGAGATTATGA
Done.