Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 222 of 325
Found at i:69110692 original size:39 final size:40
Alignment explanation
Indices: 69110611--69110694 Score: 98
Period size: 39 Copynumber: 2.1 Consensus size: 40
69110601 GAGAATTGAG
** * * *
69110611 AGTGATGTATCCGGACTAAGTTCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGGCCCAAAGAGCAATCATACT
* *
69110651 AGTGATGTATCCGGGCT-AGGCCCGAAGAGCAATCATACT
1 AGTGATGTATCCGGACTAAGGCCCAAAGAGCAATCATACT
69110690 AGTGA
1 AGTGA
69110695 CGTGTATTCG
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
39 21 0.57
40 16 0.43
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGGCCCAAAGAGCAATCATACT
Found at i:69110934 original size:29 final size:29
Alignment explanation
Indices: 69110892--69111254 Score: 671
Period size: 29 Copynumber: 12.7 Consensus size: 29
69110882 GCGAATGATT
69110892 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
69110921 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
69110950 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
69110979 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
69111008 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
69111037 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
69111066 GAGGCAC--TGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
69111093 GAGGCACCATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
69111122 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
69111151 GAGGCACTATGTGT--GAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
69111178 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
69111207 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
69111236 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
69111255 TTTTTCAACA
Statistics
Matches: 327, Mismatches: 3, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
27 54 0.17
29 273 0.83
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:69111250 original size:85 final size:85
Alignment explanation
Indices: 69110892--69111248 Score: 642
Period size: 85 Copynumber: 4.2 Consensus size: 85
69110882 GCGAATGATT
69110892 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCAC
1 GAGGCAC--TGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCAC
69110957 TATGTGTGCGAGATCAGTAATC
64 TATGTGTGCGAGATCAGTAATC
69110979 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCAC
1 GAGGCAC--TGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCAC
69111044 TATGTGTGCGAGATCAGTAATC
64 TATGTGTGCGAGATCAGTAATC
*
69111066 GAGGCACTGTGTGCGAGATCAGTAATCGAGGCACCATGTGTGCGAGATCAGTAATCGAGGCACTA
1 GAGGCACTGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTA
69111131 TGTGTGCGAGATCAGTAATC
66 TGTGTGCGAGATCAGTAATC
* *
69111151 GAGGCACTATGTGTGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTA
1 GAGGCACTGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTA
*
69111216 TGTGTGCGAGATCAGTAATT
66 TGTGTGCGAGATCAGTAATC
69111236 GAGGCACTGTGTG
1 GAGGCACTGTGTG
69111249 TGCGAGTTTT
Statistics
Matches: 264, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
85 170 0.64
87 94 0.36
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (85 bp):
GAGGCACTGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTA
TGTGTGCGAGATCAGTAATC
Found at i:69111836 original size:40 final size:41
Alignment explanation
Indices: 69111738--69111836 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
69111728 TTCGAATGGT
* ** * *
69111738 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
69111779 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TAACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTAACTA-A
69111820 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
69111837 GGACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.36
41 29 0.58
42 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
Found at i:69114617 original size:49 final size:49
Alignment explanation
Indices: 69114557--69115192 Score: 961
Period size: 49 Copynumber: 13.4 Consensus size: 49
69114547 TATATATATG
* * * * * *
69114557 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
69114606 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
69114655 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATG--TA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
69114702 --T-AT---G--TAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
69114743 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
69114792 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
69114841 TGTGATGAGGTCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* * *
69114890 TGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATG--TA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
69114937 --T-AT---G--TAATGGCCGGTGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
69114978 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
69115027 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
69115076 TGTGATGAGGCCTAATGGACGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
69115125 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
69115174 TGTGATAAGGCCTAATGGC
1 TGTGATGAGGCCTAATGGC
69115193 TAATGTAAAA
Statistics
Matches: 548, Mismatches: 19, Indels: 40
0.90 0.03 0.07
Matches are distributed among these distances:
39 64 0.12
41 6 0.01
43 2 0.00
44 8 0.01
45 2 0.00
47 6 0.01
49 460 0.84
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:69114981 original size:235 final size:235
Alignment explanation
Indices: 69114557--69115176 Score: 1132
Period size: 235 Copynumber: 2.6 Consensus size: 235
69114547 TATATATATG
* * * * * *
69114557 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAAT
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
*
69114622 GGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
69114687 GTGAAAGTGTATGTATATGTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAG
131 GTGAAAGTGTATGTATATGTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAG
69114752 GCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
196 GCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
69114792 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGTCTAAT
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
*
69114857 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGACGATGTGATGAAT
66 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
69114922 GTGAAAGTGTATGTATATGTAATGGCCGGTGTGATGAATGTGAAAGTGTATGTATATGTGATGAG
131 GTGAAAGTGTATGTATATGTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAG
69114987 GCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
196 GCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
69115027 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
* *
69115092 GGACGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
66 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
69115157 GTGAAAGTGTATGTATATGT
131 GTGAAAGTGTATGTATATGT
69115177 GATAAGGCCT
Statistics
Matches: 371, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
235 371 1.00
ACGTcount: A:0.29, C:0.07, G:0.33, T:0.31
Consensus pattern (235 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
GTGAAAGTGTATGTATATGTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAG
GCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:69115249 original size:186 final size:194
Alignment explanation
Indices: 69114557--69115192 Score: 869
Period size: 186 Copynumber: 3.4 Consensus size: 194
69114547 TATATATATG
* * * *
69114557 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
* * ** * *
69114622 GGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GGCCGATATGGTGAAAATGAAAGTGTATGTATATGTGATGAGG-CTAATGGCCGATGTGCTGAAT
*
69114687 GTGAAAGTGTATG--TA--T-AT--G--TAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
130 GTGAAAGTGTATGTATATGTGATAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATGTATA
* *
69114743 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
* ** *
69114808 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGTCTAATGGCCGATGTGGTGAAT
66 GGCCGATATGGTGAAAATGAAAGTGTATGTATATGTGATGAGG-CTAATGGCCGATGTGCTGAAT
69114873 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATG--T
130 GTGAAAGTGTATGTATATGTGAT-AGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATGTAT
69114936 A
194 A
*
69114937 --T-AT---G--TAATGGCCGGTGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
* ** *
69114994 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
66 GGCCGATATGGTGAAAATGAAAGTGTATGTATATGTGATGAGG-CTAATGGCCGATGTGCTGAAT
*
69115059 GTGAAAGTGTATGTATATGTGATGAGGCCTAATGGACGATGTGGTGAATGTGAAAGTGTATGTAT
130 GTGAAAGTGTATGTATATGTGAT-AGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATGTAT
69115124 A
194 A
* *
69115125 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
69115190 GGC
66 GGC
69115193 TAATGTAAAA
Statistics
Matches: 411, Mismatches: 19, Indels: 30
0.89 0.04 0.07
Matches are distributed among these distances:
186 308 0.75
188 5 0.01
190 2 0.00
191 6 0.01
192 1 0.00
194 4 0.01
196 85 0.21
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (194 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
GGCCGATATGGTGAAAATGAAAGTGTATGTATATGTGATGAGGCTAATGGCCGATGTGCTGAATG
TGAAAGTGTATGTATATGTGATAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:69115345 original size:37 final size:37
Alignment explanation
Indices: 69115295--69115415 Score: 224
Period size: 37 Copynumber: 3.3 Consensus size: 37
69115285 GAATATGTTT
*
69115295 CGGGTGAGACCCGATGACTACGTGTGGAGATTATGAC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGAC
69115332 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGAC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGAC
*
69115369 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGAC
69115406 CGGGTAAGAC
1 CGGGTAAGAC
69115416 TTCTTTTATA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 82 1.00
ACGTcount: A:0.26, C:0.19, G:0.34, T:0.21
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGAC
Found at i:69122406 original size:31 final size:31
Alignment explanation
Indices: 69122360--69122426 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
69122350 TGGTTGTATT
* *
69122360 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
69122391 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
69122422 TTTTA
1 TTTTA
69122427 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:69122525 original size:43 final size:41
Alignment explanation
Indices: 69122478--69122791 Score: 304
Period size: 43 Copynumber: 7.3 Consensus size: 41
69122468 ATCTGCCAAA
* * *
69122478 TTTAGCGGCGTTTGTAAAAAAAGCACCGCTAAAAGCCTTGACG
1 TTTAGCGGCGTTT-TACAAAAA-CGCCGCTAAAAGCCTTGACC
* *
69122521 TTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCG-TTTT-ACAAAAACGCCGCTAAAAGCCTTGACC
* ** * * *
69122564 TTTAGCAGCGTTTGTGGGAAAAATGCCGCTAAAAACCTTTACC
1 TTTAGCGGCGTTT-T-ACAAAAACGCCGCTAAAAGCCTTGACC
* * *
69122607 TTTAGCGGCGCTTTTACCACAAACACCACTAAAAGCCTTGACC
1 TTTAGCGGCG-TTTTA-CAAAAACGCCGCTAAAAGCCTTGACC
** *
69122650 TTTAGCGGCGTTTGTGGGAAAAACGCCGCTAAAAGCCTTTACC
1 TTTAGCGGCGTTT-T-ACAAAAACGCCGCTAAAAGCCTTGACC
* *
69122693 TTTAGCGGCGCTTTTACAGAAACGCCACTAAAAGCCTTGACC
1 TTTAGCGGCG-TTTTACAAAAACGCCGCTAAAAGCCTTGACC
* * * *
69122735 TTTAGCGTCGCTTTACCCACAAACGCTGCTAAAAGCCTTGACC
1 TTTAGCGGCGTTTTA--CAAAAACGCCGCTAAAAGCCTTGACC
69122778 TTTAGCGGCGTTTT
1 TTTAGCGGCGTTTT
69122792 TTTCCAATAA
Statistics
Matches: 221, Mismatches: 40, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
41 4 0.02
42 37 0.17
43 167 0.76
44 13 0.06
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (41 bp):
TTTAGCGGCGTTTTACAAAAACGCCGCTAAAAGCCTTGACC
Found at i:69122627 original size:86 final size:86
Alignment explanation
Indices: 69122503--69122792 Score: 388
Period size: 86 Copynumber: 3.4 Consensus size: 86
69122493 AAAAAAAGCA
* * * *
69122503 CCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTA
1 CCGCTAAAAGCCTTTACCTTTAGCGGCGCTTTTACCACAAACGCCACTAAAAGCCTTGACCTTTA
*
69122568 GCAGCGTTTGTGGGAAAAATG
66 GCAGCGTTTGTGGGAAAAACG
* *
69122589 CCGCTAAAAACCTTTACCTTTAGCGGCGCTTTTACCACAAACACCACTAAAAGCCTTGACCTTTA
1 CCGCTAAAAGCCTTTACCTTTAGCGGCGCTTTTACCACAAACGCCACTAAAAGCCTTGACCTTTA
*
69122654 GCGGCGTTTGTGGGAAAAACG
66 GCAGCGTTTGTGGGAAAAACG
*
69122675 CCGCTAAAAGCCTTTACCTTTAGCGGCGCTTTTA-CAGAAACGCCACTAAAAGCCTTGACCTTTA
1 CCGCTAAAAGCCTTTACCTTTAGCGGCGCTTTTACCACAAACGCCACTAAAAGCCTTGACCTTTA
**** *
69122739 GC-GTCGCTTT-ACCCACAAACG
66 GCAG-CG-TTTGTGGGAAAAACG
* * *
69122760 CTGCTAAAAGCCTTGACCTTTAGCGGCGTTTTT
1 CCGCTAAAAGCCTTTACCTTTAGCGGCGCTTTT
69122793 TTCCAATAAA
Statistics
Matches: 183, Mismatches: 19, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
84 1 0.01
85 68 0.37
86 114 0.62
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (86 bp):
CCGCTAAAAGCCTTTACCTTTAGCGGCGCTTTTACCACAAACGCCACTAAAAGCCTTGACCTTTA
GCAGCGTTTGTGGGAAAAACG
Found at i:69134499 original size:22 final size:24
Alignment explanation
Indices: 69134474--69134519 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
69134464 ATTCTATGCT
69134474 AATTGATAA-AGAT-TAA-TATATA
1 AATT-ATAATAGATATAATTATATA
69134496 AATTATAATAGATATAATTATATA
1 AATTATAATAGATATAATTATATA
69134520 TTAAAGATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 3 0.14
24 6 0.29
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (24 bp):
AATTATAATAGATATAATTATATA
Found at i:69138417 original size:39 final size:40
Alignment explanation
Indices: 69138331--69138497 Score: 166
Period size: 39 Copynumber: 4.3 Consensus size: 40
69138321 ACTTGAAACC
* *
69138331 AATTACCAGCAC-AAGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACGAAGCCTGCGGGACTTTAAGCCCGGATAT
* * *
69138370 AATACCAGCTCGAAGCCTGCGGGACTTT-AGCCCGGACAT
1 AATTCCAGCACGAAGCCTGCGGGACTTTAAGCCCGGATAT
* * * *
69138409 ATTTCCAGCACGTAGCCTGC-GAACTTTAAGTCCGGATAT
1 AATTCCAGCACGAAGCCTGCGGGACTTTAAGCCCGGATAT
** *
69138448 AATTCCAGCAC-ATAGCCTGC-GGACCCTAAGTCCGGATAT
1 AATTCCAGCACGA-AGCCTGCGGGACTTTAAGCCCGGATAT
69138487 AATTCCAGCAC
1 AATTCCAGCAC
69138498 ATAACCTGCG
Statistics
Matches: 107, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
38 18 0.17
39 89 0.83
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (40 bp):
AATTCCAGCACGAAGCCTGCGGGACTTTAAGCCCGGATAT
Found at i:69138449 original size:78 final size:78
Alignment explanation
Indices: 69138363--69138526 Score: 181
Period size: 78 Copynumber: 2.1 Consensus size: 78
69138353 GAATTTAAAC
* * * * * *
69138363 CCGG-TATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGC
1 CCGGATATAATACCAGCAC-ATAGCCTGC-GGACCCTAAGCCCGGACATAATTCCAGCACATAAC
**
69138425 CTGCGAACTTTAAGT
64 CTGCGAACCCTAAGT
* * *
69138440 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAACCT
1 CCGGATATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAACCT
*
69138505 GCGGACCCTAAGT
66 GCGAACCCTAAGT
69138518 CCGGATATA
1 CCGGATATA
69138527 CATCACTGAA
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
77 8 0.11
78 64 0.89
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (78 bp):
CCGGATATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAACCT
GCGAACCCTAAGT
Found at i:69138498 original size:39 final size:39
Alignment explanation
Indices: 69138401--69138526 Score: 189
Period size: 39 Copynumber: 3.2 Consensus size: 39
69138391 GGACTTTAGC
* * * * **
69138401 CCGGACATATTTCCAGCACGTAGCCTGCGAACTTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
69138440 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
69138479 CCGGATATAATTCCAGCACATAACCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
69138518 CCGGATATA
1 CCGGATATA
69138527 CATCACTGAA
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:69145051 original size:39 final size:40
Alignment explanation
Indices: 69145008--69145133 Score: 132
Period size: 39 Copynumber: 3.2 Consensus size: 40
69144998 ACCAGCTTGA
* * *
69145008 AGCCTGCGGGA-CTTTAGCCCGAACATATTTCCAGCACGT
1 AGCCTGCGGGACCTTAAGCCCGAACATAATTCCAGCACAT
* * * *
69145047 AGCCTG-TGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGGACCTTAAGCCCGAACATAATTCCAGCACAT
* * *
69145086 AGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGGACCTTAAGCCCGAACATAATTCCAGCACAT
*
69145125 AACCTGCGG
1 AGCCTGCGG
69145134 ACTCTAAGTC
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
38 3 0.04
39 72 0.95
40 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
AGCCTGCGGGACCTTAAGCCCGAACATAATTCCAGCACAT
Found at i:69145090 original size:78 final size:78
Alignment explanation
Indices: 69145008--69145151 Score: 175
Period size: 78 Copynumber: 1.8 Consensus size: 78
69144998 ACCAGCTTGA
* * * * *
69145008 AGCCTGCGGGA-CTTTAGCCCGAACATATTTCCAGCACGTAGCCTGTGGAC-CTTAAGTCCGGAT
1 AGCCTGC-GGACCTTAAGCCCGAACATAATTCCAGCACATAACCTGCGGACTC-TAAGTCCGGAT
69145071 ATAATTCCAGCACAT
64 ATAATTCCAGCACAT
* * * *
69145086 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAACCTGCGGACTCTAAGTCTGGATAT
1 AGCCTGCGGACCTTAAGCCCGAACATAATTCCAGCACATAACCTGCGGACTCTAAGTCCGGATAT
69145151 A
66 A
69145152 CATCACTAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
77 3 0.05
78 51 0.93
79 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (78 bp):
AGCCTGCGGACCTTAAGCCCGAACATAATTCCAGCACATAACCTGCGGACTCTAAGTCCGGATAT
AATTCCAGCACAT
Found at i:69145134 original size:39 final size:39
Alignment explanation
Indices: 69145036--69145151 Score: 180
Period size: 39 Copynumber: 3.0 Consensus size: 39
69145026 CCGAACATAT
* *
69145036 TTCCAGCACGTAGCCTGTGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
69145075 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
* *
69145114 TTCCAGCACATAACCTGCGGA-CTCTAAGTCTGGATATA
1 TTCCAGCACATAGCCTGCGGACCT-TAAGTCCGGATATA
69145152 CATCACTAAA
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
38 2 0.03
39 70 0.97
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
Found at i:69148114 original size:16 final size:16
Alignment explanation
Indices: 69148093--69148136 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
69148083 AGACAATAAG
69148093 CAAAGTGCAAGCCTGT
1 CAAAGTGCAAGCCTGT
**
69148109 CAAAGTGTGAGCCTGT
1 CAAAGTGCAAGCCTGT
* *
69148125 CTAATTGCAAGC
1 CAAAGTGCAAGC
69148137 TAATATGGCG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.23
Consensus pattern (16 bp):
CAAAGTGCAAGCCTGT
Found at i:69148736 original size:15 final size:13
Alignment explanation
Indices: 69148704--69148736 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
69148694 ATCGAACACA
69148704 GGTGTGTGCCACG
1 GGTGTGTGCCACG
69148717 GGTGTGTGCCACG
1 GGTGTGTGCCACG
*
69148730 GGCGTGT
1 GGTGTGT
69148737 CCCTGCCGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.06, C:0.21, G:0.48, T:0.24
Consensus pattern (13 bp):
GGTGTGTGCCACG
Found at i:69155740 original size:17 final size:17
Alignment explanation
Indices: 69155720--69155757 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
69155710 TTTTATCAAA
69155720 TTTTTAAGATTCATTTG
1 TTTTTAAGATTCATTTG
69155737 TTTTTAAGATTCATTTG
1 TTTTTAAGATTCATTTG
69155754 TTTT
1 TTTT
69155758 CCTTTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.21, C:0.05, G:0.11, T:0.63
Consensus pattern (17 bp):
TTTTTAAGATTCATTTG
Found at i:69159552 original size:26 final size:26
Alignment explanation
Indices: 69159523--69159572 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
69159513 TCTAATCCCT
69159523 ATTTTACCCCAAGTAAAATTTTGACG
1 ATTTTACCCCAAGTAAAATTTTGACG
***
69159549 ATTTTACCCTTGGTAAAATTTTGA
1 ATTTTACCCCAAGTAAAATTTTGA
69159573 TAAAATATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (26 bp):
ATTTTACCCCAAGTAAAATTTTGACG
Found at i:69162145 original size:37 final size:37
Alignment explanation
Indices: 69162095--69162180 Score: 154
Period size: 37 Copynumber: 2.3 Consensus size: 37
69162085 TTATTACGAA
*
69162095 GTCTTACACGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
69162132 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
69162169 GTCTCACCCGGA
1 GTCTTACCCGGA
69162181 ATATATTTCC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:69162296 original size:48 final size:48
Alignment explanation
Indices: 69162225--69162466 Score: 331
Period size: 48 Copynumber: 5.0 Consensus size: 48
69162215 TGTTACAACA
* * *
69162225 TTCACATTAGCCATTCGACTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
69162273 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
69162321 TTCACATTAGCCATTCGGCTTTACCGCATATACATATTTTATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * * *
69162369 TTCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATACAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
69162417 TTCACATTATCCATTCGGCTTTACCACATATACATATCATACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATC-T-CATATATAT
69162467 ATTTATCTTG
Statistics
Matches: 166, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
48 159 0.96
50 7 0.04
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:69162331 original size:96 final size:95
Alignment explanation
Indices: 69162225--69162462 Score: 379
Period size: 96 Copynumber: 2.5 Consensus size: 95
69162215 TGTTACAACA
* *
69162225 TTCACATTAGCCATTCGACTTTACCACATATTCATATCTCATACATATTTCACATTCGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT-TCATACATATTTCACATTCGCCATTCG
*
69162290 GCTTTACCACATATACATATCACACATATAT
65 GCTTTACCACATATACATATCACACATACAT
* * *
69162321 TTCACATTAGCCATTCGGCTTTACCGCATATACATATTTTATATATATTTCACATTCGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATA-TTCATACATATTTCACATTCGCCATTCG
*
69162386 GCTTTACCACATCTACATATCACACATACAT
65 GCTTTACCACATATACATATCACACATACAT
*
69162417 TTCACATTATCCATTCGGCTTTACCACATATACATA-TCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATTCATACATAT
69162463 ATATATTTAT
Statistics
Matches: 130, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
94 8 0.06
96 121 0.93
97 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (95 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATTCATACATATTTCACATTCGCCATTCGG
CTTTACCACATATACATATCACACATACAT
Found at i:69164610 original size:28 final size:28
Alignment explanation
Indices: 69164563--69164659 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
69164553 ATTTAAACCC
*
69164563 TAGGGGT-ATATT-GGTAATTTTGCTATT
1 TAGGGGTAAT-TTCGGTAATTTTGCTCTT
69164590 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
* **
69164618 TAGGGGTGATTTTAGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
69164646 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
69164660 TGATCTACGC
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 9 0.15
28 52 0.85
ACGTcount: A:0.20, C:0.07, G:0.27, T:0.46
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:69166478 original size:19 final size:18
Alignment explanation
Indices: 69166441--69166484 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
69166431 ATACATACAG
69166441 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
69166458 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
69166477 TACTAATT
1 TAATAATT
69166485 AAAATTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:69172011 original size:29 final size:28
Alignment explanation
Indices: 69171952--69172011 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
69171942 AAAAAATGTC
***
69171952 AAATTAGGGATTAAATTGTGAAATGTGT
1 AAATTAGGGATTAAATTGTGAAATAAAT
*
69171980 AAATTGAGGGGTTAAATTGTGAAATAAAT
1 AAATT-AGGGATTAAATTGTGAAATAAAT
69172009 AAA
1 AAA
69172012 AAAAATATGG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 5 0.19
29 22 0.81
ACGTcount: A:0.45, C:0.00, G:0.23, T:0.32
Consensus pattern (28 bp):
AAATTAGGGATTAAATTGTGAAATAAAT
Found at i:69174715 original size:12 final size:12
Alignment explanation
Indices: 69174700--69174726 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
69174690 AAACCAGAAA
69174700 TGAATTGCATGT
1 TGAATTGCATGT
69174712 TGAATTGCATGT
1 TGAATTGCATGT
69174724 TGA
1 TGA
69174727 GTCAAATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.07, G:0.26, T:0.41
Consensus pattern (12 bp):
TGAATTGCATGT
Found at i:69177686 original size:6 final size:6
Alignment explanation
Indices: 69177677--69177713 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
69177667 ATGAAATGAA
69177677 ATTTAG ATTTAG ATTTAG ATTTAG ATTTAG ATTTAG A
1 ATTTAG ATTTAG ATTTAG ATTTAG ATTTAG ATTTAG A
69177714 AAGAGAATGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTTAG
Found at i:69180123 original size:6 final size:6
Alignment explanation
Indices: 69180112--69180136 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
69180102 CACCACCCGT
69180112 CCTCCA CCTCCA CCTCCA CCTCCA C
1 CCTCCA CCTCCA CCTCCA CCTCCA C
69180137 TCCGCCTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.68, G:0.00, T:0.16
Consensus pattern (6 bp):
CCTCCA
Found at i:69183900 original size:36 final size:36
Alignment explanation
Indices: 69183853--69183924 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
69183843 ATAAAGTAAA
69183853 AAAATACTAAAATATAAAAATTTTCTAAAGGAAAGT
1 AAAATACTAAAATATAAAAATTTTCTAAAGGAAAGT
69183889 AAAATACTAAAATATAAAAATTTTCTAAAGGAAAGT
1 AAAATACTAAAATATAAAAATTTTCTAAAGGAAAGT
69183925 TCCTTTTATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.58, C:0.06, G:0.08, T:0.28
Consensus pattern (36 bp):
AAAATACTAAAATATAAAAATTTTCTAAAGGAAAGT
Found at i:69183976 original size:12 final size:12
Alignment explanation
Indices: 69183959--69183983 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69183949 AAATTGTGTG
69183959 TGTTTTTTTTTT
1 TGTTTTTTTTTT
69183971 TGTTTTTTTTTT
1 TGTTTTTTTTTT
69183983 T
1 T
69183984 TACAAATTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (12 bp):
TGTTTTTTTTTT
Found at i:69186551 original size:110 final size:110
Alignment explanation
Indices: 69186358--69186577 Score: 350
Period size: 110 Copynumber: 2.0 Consensus size: 110
69186348 ATTTAACAAG
* *
69186358 CTTACATACCTTATGCTCTTGTCCTAAAACAACAAATAATTCTGGTTGTTCCATGTACACTTCCT
1 CTTACATACCTGATGCTCTTGTCCTAAAACAACAAATAATTCTAGTTGTTCCATGTACACTTCCT
* *
69186423 CTTCCAATTCGTCATTTAAAAATGTAGTTTTAACATCCATTTGGT
66 CTTCCAATTCATCATTTAAAAATGCAGTTTTAACATCCATTTGGT
** ** * *
69186468 CTTACATACCTGATGCTCTTGTCCTGGAACAACAAATCCTTTTAGTTGTTCCATGTACAGTTCCT
1 CTTACATACCTGATGCTCTTGTCCTAAAACAACAAATAATTCTAGTTGTTCCATGTACACTTCCT
69186533 CTTCCAATTCATCATTTAAAAATGCAGTTTTAACATCCATTTGGT
66 CTTCCAATTCATCATTTAAAAATGCAGTTTTAACATCCATTTGGT
69186578 GAATAATCAA
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
110 100 1.00
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (110 bp):
CTTACATACCTGATGCTCTTGTCCTAAAACAACAAATAATTCTAGTTGTTCCATGTACACTTCCT
CTTCCAATTCATCATTTAAAAATGCAGTTTTAACATCCATTTGGT
Found at i:69188813 original size:40 final size:40
Alignment explanation
Indices: 69188768--69189259 Score: 611
Period size: 40 Copynumber: 12.2 Consensus size: 40
69188758 GGACTAAGAT
* * *
69188768 CCGAAGGCATTTGTGCTAGTGACTATATCCGGACTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
69188808 TCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
69188848 CCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
69188888 CCGAAGGCATTTGTGCGAATTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
69188928 ACGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
69188968 CAGAAGGCATTTGTGCGAGTTACTATATCCGGGC-ATGAT-
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAG-TC
** ** * *
69189007 -TTATTG-ATATATGTGC-ATGATTATTCGGATGATAACCGGACTAAGAT-
1 CCGAAGGCAT-T-TGTGCGA-G-TTA--C---T-ATATCCGGGCTAAG-TC
* *
69189054 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
69189094 TCGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
69189134 CCGAAGGCATTTGTGCGAGTTACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
69189174 CTGAAGGCATTTGTGCGAATTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
69189214 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
69189253 CCGAAGG
1 CCGAAGG
69189260 TACTTGGGTT
Statistics
Matches: 395, Mismatches: 41, Indels: 33
0.84 0.09 0.07
Matches are distributed among these distances:
37 2 0.01
38 4 0.01
39 24 0.06
40 335 0.85
41 1 0.00
42 1 0.00
44 1 0.00
45 1 0.00
46 10 0.03
47 10 0.03
48 4 0.01
49 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:69189227 original size:286 final size:285
Alignment explanation
Indices: 69188715--69189259 Score: 1000
Period size: 286 Copynumber: 1.9 Consensus size: 285
69188705 ATGGATGTGT
69188715 CATGATTTATTGATATATGTGCATGATTATTCGGATGATAACCGGACTAAGATCCGAAGGCATTT
1 CATGATTTATTGATATATGTGCATGATTATTCGGATGATAACCGGACTAAGATCCGAAGGCATTT
*
69188780 GTGCTAGTGACTATATCCGGACTAAGTCTCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAA
66 GTGCTAGTGACTATATCCGGACTAAGTCTCGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAA
*
69188845 GTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTA
131 GTCCCGAAGGCATTTGTGCAAGTTACTATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAATTA
*
69188910 CTATATCCGGGCTAAGTCACGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCAGAAGG
196 CTATATCCGGGCTAAGTCACGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAATCCAGAAGG
69188975 CATTTGTGCGAGTTACTATATCCGGG
260 CATTTGTGCGAGTTACTATATCCGGG
69189001 CATGATTTATTGATATATGTGCATGATTATTCGGATGATAACCGGACTAAGATCCGAAGGCATTT
1 CATGATTTATTGATATATGTGCATGATTATTCGGATGATAACCGGACTAAGATCCGAAGGCATTT
*
69189066 GTGCTAGTGACTATATCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAA
66 GTGCTAGTGACTATATCCGGACTAAGTCTCGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAA
* *
69189131 GTCCCGAAGGCATTTGTGCGAGTTACTATATCCAGGCTAAGTCCTGAAGGCATTTGTGCGAATTA
131 GTCCCGAAGGCATTTGTGCAAGTTACTATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAATTA
* * *
69189196 CTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAGG
196 CTATATCCGGGCTAAGTCACGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAATCCAGAAGG
69189260 TACTTGGGTT
Statistics
Matches: 250, Mismatches: 9, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
285 14 0.06
286 236 0.94
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (285 bp):
CATGATTTATTGATATATGTGCATGATTATTCGGATGATAACCGGACTAAGATCCGAAGGCATTT
GTGCTAGTGACTATATCCGGACTAAGTCTCGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAA
GTCCCGAAGGCATTTGTGCAAGTTACTATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAATTA
CTATATCCGGGCTAAGTCACGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAATCCAGAAGGC
ATTTGTGCGAGTTACTATATCCGGG
Found at i:69189230 original size:246 final size:246
Alignment explanation
Indices: 69188796--69189245 Score: 778
Period size: 246 Copynumber: 1.8 Consensus size: 246
69188786 GTGACTATAT
*
69188796 CCGGACTAAGTCTCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGACTAAGTCTCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* *
69188861 TGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATATCCGGGCTAAG
66 TGCAAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATATCCAGGCTAAG
*
69188926 TCACGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTTAC
131 TCACGAAGGCATTTGTGCGAATTACTATATCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTTAC
69188991 TATATCCGGGCATGATTTATTGATATATGTGCATGATTATTCGGATGATAA
196 TATATCCGGGCATGATTTATTGATATATGTGCATGATTATTCGGATGATAA
* *
69189042 CCGGACTAAGATC-CGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCTCGAAGGCATTT
1 CCGGACTAAG-TCTCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTT
* *
69189106 GTGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCAGGCTAA
65 GTGCAAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATATCCAGGCTAA
*
69189171 GTC-CTGAAGGCATTTGTGCGAATTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT
130 GTCAC-GAAGGCATTTGTGCGAATTACTATATCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTT
*
69189235 GCTATATCCGG
194 ACTATATCCGG
69189246 CTAAATCCCG
Statistics
Matches: 192, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
245 1 0.01
246 189 0.98
247 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (246 bp):
CCGGACTAAGTCTCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATATCCAGGCTAAG
TCACGAAGGCATTTGTGCGAATTACTATATCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTTAC
TATATCCGGGCATGATTTATTGATATATGTGCATGATTATTCGGATGATAA
Found at i:69193196 original size:2 final size:2
Alignment explanation
Indices: 69193189--69193283 Score: 190
Period size: 2 Copynumber: 47.5 Consensus size: 2
69193179 ATGATATGTA
69193189 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
69193231 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
69193273 TG TG TG TG TG T
1 TG TG TG TG TG T
69193284 ATTAGGAGGC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 93 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:69203525 original size:17 final size:18
Alignment explanation
Indices: 69203489--69203527 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
69203479 AATTAAATTC
*
69203489 TAATAAAATTATTTGTAGA
1 TAATAAAA-TATTAGTAGA
69203508 TAATAAAA-ATTAGTAGA
1 TAATAAAATATTAGTAGA
69203525 TAA
1 TAA
69203528 AGATTAGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
19 8 0.42
ACGTcount: A:0.54, C:0.00, G:0.10, T:0.36
Consensus pattern (18 bp):
TAATAAAATATTAGTAGA
Found at i:69204745 original size:16 final size:16
Alignment explanation
Indices: 69204711--69204746 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
69204701 CATATAATAT
*
69204711 AAAATGAAAAAATGAA
1 AAAATGAAAAAAAGAA
69204727 AAAATGAAAAAAAAGAA
1 AAAATG-AAAAAAAGAA
69204744 AAA
1 AAA
69204747 CAAAAGCTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.81, C:0.00, G:0.11, T:0.08
Consensus pattern (16 bp):
AAAATGAAAAAAAGAA
Found at i:69204746 original size:8 final size:8
Alignment explanation
Indices: 69204711--69204738 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
69204701 CATATAATAT
69204711 AAAATGAA
1 AAAATGAA
69204719 AAAATGAA
1 AAAATGAA
69204727 AAAATGAA
1 AAAATGAA
69204735 AAAA
1 AAAA
69204739 AAGAAAAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.11
Consensus pattern (8 bp):
AAAATGAA
Found at i:69206919 original size:8 final size:8
Alignment explanation
Indices: 69206896--69206934 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
69206886 ATGAATTATT
69206896 TTGAATGAA
1 TTGAATG-A
*
69206905 ATGAATGA
1 TTGAATGA
69206913 TTGAATGA
1 TTGAATGA
*
69206921 TTGAATGG
1 TTGAATGA
69206929 TTGAAT
1 TTGAAT
69206935 TTGAATTGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
8 21 0.78
9 6 0.22
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.36
Consensus pattern (8 bp):
TTGAATGA
Found at i:69207362 original size:43 final size:42
Alignment explanation
Indices: 69207253--69207362 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 42
69207243 GATTTGAGAT
* * *
69207253 TTACATGTAAGACCATATCTGGGACATAGGCATCATATCTGA
1 TTACATGTAAGACCACATCTGGGACAGAGACATCATATCTGA
* * *
69207295 TTTCGTGTAAGACC-CTATCTGGGACAGAGACATTGATA-CTGAA
1 TTACATGTAAGACCAC-ATCTGGGACAGAGACA-TCATATCTG-A
*
69207338 TTACATGTAAGACCACATCCGGGAC
1 TTACATGTAAGACCACATCTGGGAC
69207363 GTAAGCATTG
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
42 29 0.53
43 25 0.45
44 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (42 bp):
TTACATGTAAGACCACATCTGGGACAGAGACATCATATCTGA
Found at i:69207372 original size:43 final size:42
Alignment explanation
Indices: 69207253--69207372 Score: 104
Period size: 43 Copynumber: 2.8 Consensus size: 42
69207243 GATTTGAGAT
* * *
69207253 TTACATGTAAGACCATATCTGGGACATAGGCA-TCATATCTGA
1 TTACATGTAAGACCACATCTGGGAC-TAAGCATTGATATCTGA
* *
69207295 TTTCGTGTAAGACC-CTATCTGGGAC-AGAGACATTGATA-CTGAA
1 TTACATGTAAGACCAC-ATCTGGGACTA-AG-CATTGATATCTG-A
*
69207338 TTACATGTAAGACCACATCCGGGACGTAAGCATTG
1 TTACATGTAAGACCACATCTGGGAC-TAAGCATTG
69207373 TACCCGTTTA
Statistics
Matches: 62, Mismatches: 8, Indels: 15
0.73 0.09 0.18
Matches are distributed among these distances:
40 1 0.02
41 1 0.02
42 26 0.42
43 30 0.48
44 3 0.05
45 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (42 bp):
TTACATGTAAGACCACATCTGGGACTAAGCATTGATATCTGA
Found at i:69209404 original size:27 final size:27
Alignment explanation
Indices: 69209359--69209415 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
69209349 AATATATGAA
69209359 TGATTGAAATGTGTATTGAATTGG-AAT
1 TGATTGAAATGTGTATTG-ATTGGAAAT
*
69209386 TGATTGAAAT-TAGTGTTGATTGGAAAT
1 TGATTGAAATGT-GTATTGATTGGAAAT
69209413 TGA
1 TGA
69209416 AAAGTGAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.40
Consensus pattern (27 bp):
TGATTGAAATGTGTATTGATTGGAAAT
Found at i:69216236 original size:15 final size:15
Alignment explanation
Indices: 69216216--69216245 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
69216206 AACGTCCAAT
69216216 TTGGTGCTATGACTA
1 TTGGTGCTATGACTA
*
69216231 TTGGTGCTGTGACTA
1 TTGGTGCTATGACTA
69216246 GCCGTTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.13, G:0.30, T:0.40
Consensus pattern (15 bp):
TTGGTGCTATGACTA
Found at i:69217575 original size:18 final size:18
Alignment explanation
Indices: 69217543--69217577 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
69217533 AGGTCGAGTG
*
69217543 AAAAAATTGAGGAAAACA
1 AAAAAATTGACGAAAACA
*
69217561 AAAAAATTTACGAAAAC
1 AAAAAATTGACGAAAAC
69217578 CCCCTATACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.09, G:0.11, T:0.14
Consensus pattern (18 bp):
AAAAAATTGACGAAAACA
Found at i:69219589 original size:49 final size:49
Alignment explanation
Indices: 69219536--69219764 Score: 269
Period size: 49 Copynumber: 4.6 Consensus size: 49
69219526 GTACGCATGT
* * *
69219536 TAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAG
1 TAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACGTAG
* * ** *
69219585 TAGCCTGCACTTAGTACTACAAACGTGACCTAACCATCTGATACACGTAG
1 TAGCCTGCACTTAGTACTACACATGTGACC-AATTATCTGGTACACGTAG
* * * * *
69219635 TAGCCTGCACTTAGTACTAGACATGTGATCGAAGTTATCGGGTACGCATAG
1 TAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCTGGTACACGTAG
* * * *
69219686 TAACCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACATGTAG
1 TAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACGTAG
*
69219735 TAGCCTGGACTTAGTACTACACATGTGACC
1 TAGCCTGCACTTAGTACTACACATGTGACC
69219765 TCACAATAGA
Statistics
Matches: 147, Mismatches: 30, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
49 66 0.45
50 44 0.30
51 37 0.25
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACGTAG
Found at i:69219760 original size:100 final size:99
Alignment explanation
Indices: 69219536--69219764 Score: 289
Period size: 100 Copynumber: 2.3 Consensus size: 99
69219526 GTACGCATGT
* ** *
69219536 TAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAGTAGCCTGCACTTAGTA
1 TAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACATAGTAACCTGCACTTAGTA
* *
69219601 CTACAAACGTGACCTAACCATCTGATACACGTAG
66 CTACAAACGCGACCTAACAATCTGATACACGTAG
* * * *
69219635 TAGCCTGCACTTAGTACTAGACATGTGATCGAAGTTATCGGGTACGCATAGTAACCTGCACTTAG
1 TAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGGTACACATAGTAACCTGCACTTAG
* * * * *
69219700 TACTACACATGCGACC-AATAATCTGGTACATGTAG
64 TACTACAAACGCGACCTAACAATCTGATACACGTAG
*
69219735 TAGCCTGGACTTAGTACTACACATGTGACC
1 TAGCCTGCACTTAGTACTACACATGTGACC
69219765 TCACAATAGA
Statistics
Matches: 110, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
99 27 0.25
100 44 0.40
101 39 0.35
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (99 bp):
TAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACATAGTAACCTGCACTTAGTA
CTACAAACGCGACCTAACAATCTGATACACGTAG
Found at i:69220040 original size:27 final size:27
Alignment explanation
Indices: 69220010--69220063 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
69220000 TCATACAACC
* *
69220010 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
69220037 CATGTAACAATAATTTTTCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
69220064 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.06, T:0.43
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:69221171 original size:6 final size:7
Alignment explanation
Indices: 69221151--69221178 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
69221141 TAAAAAATAT
69221151 AATAAAA
1 AATAAAA
69221158 AATAAAA
1 AATAAAA
69221165 AATAAAA
1 AATAAAA
69221172 AATAAAA
1 AATAAAA
69221179 TTTTCATCGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AATAAAA
Found at i:69221998 original size:20 final size:20
Alignment explanation
Indices: 69221949--69221999 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
69221939 AGATTATGCG
* *
69221949 AAGTAAATGAAATGGAAAGT
1 AAGTAAATGGAATGGAAAGA
* *
69221969 AGGTAAATGGAATGGTAAGA
1 AAGTAAATGGAATGGAAAGA
69221989 AAGTAAATGGA
1 AAGTAAATGGA
69222000 GGGTTTTTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.51, C:0.00, G:0.29, T:0.20
Consensus pattern (20 bp):
AAGTAAATGGAATGGAAAGA
Found at i:69229947 original size:17 final size:17
Alignment explanation
Indices: 69229921--69229974 Score: 81
Period size: 17 Copynumber: 3.2 Consensus size: 17
69229911 TACTGGCTCA
*
69229921 CATAACGATGCCGATGC
1 CATAATGATGCCGATGC
69229938 CATAATGATGCCGATGC
1 CATAATGATGCCGATGC
* *
69229955 CATAATGTTGCCAATGC
1 CATAATGATGCCGATGC
69229972 CAT
1 CAT
69229975 GTCCTAGACA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (17 bp):
CATAATGATGCCGATGC
Found at i:69230026 original size:48 final size:48
Alignment explanation
Indices: 69229963--69230111 Score: 208
Period size: 48 Copynumber: 3.1 Consensus size: 48
69229953 GCCATAATGT
* *
69229963 TGCCAATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATAACAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGA
* *
69230011 TGCCAATGCCATGTCCCAGACATGGCCTTACACTAGCTCACATAACGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGA
* * * * * *
69230059 TGCCGATGCCATGTCCCAGACATGATCTTATACGGGATCACATACCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGA
69230107 TGCCA
1 TGCCA
69230112 TATCCCAGAT
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGA
Found at i:69232585 original size:23 final size:23
Alignment explanation
Indices: 69232539--69232602 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 23
69232529 TGGACAAAAG
* * *
69232539 TGTAAAGCAGGGTCACACGCCCA
1 TGTAAAGTAGGGTCACATGACCA
69232562 TGTAAAGTAGGGTCACATGACCA
1 TGTAAAGTAGGGTCACATGACCA
* * *
69232585 TGCAAACTAGGGTGACAT
1 TGTAAAGTAGGGTCACAT
69232603 AGCCGTGTGG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.33, C:0.22, G:0.27, T:0.19
Consensus pattern (23 bp):
TGTAAAGTAGGGTCACATGACCA
Found at i:69238243 original size:29 final size:29
Alignment explanation
Indices: 69238210--69238283 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 29
69238200 CCTTCGAGCT
* *
69238210 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCA
* **
69238239 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCA
**
69238268 CGCACACTTAGTGCCA
1 CGCACACCCAGTGCCA
69238284 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACCCAGTGCCATATATTTCCAGCA
Found at i:69246224 original size:29 final size:29
Alignment explanation
Indices: 69246191--69246322 Score: 219
Period size: 29 Copynumber: 4.6 Consensus size: 29
69246181 CCTTCGAGCT
** * *
69246191 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
69246220 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
69246249 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
69246278 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
69246307 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
69246323 ATCTCGTCAC
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 97 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:69246225 original size:58 final size:58
Alignment explanation
Indices: 69246162--69246322 Score: 187
Period size: 58 Copynumber: 2.8 Consensus size: 58
69246152 AATTTAAGCC
* * * * * *
69246162 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * * **
69246220 TGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * **
69246278 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCA
69246323 ATCTCGTCAC
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 91 1.00
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:69246253 original size:87 final size:87
Alignment explanation
Indices: 69246162--69246322 Score: 223
Period size: 87 Copynumber: 1.9 Consensus size: 87
69246152 AATTTAAGCC
* * * * * *
69246162 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCATGCACAC
1 CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
69246227 TTAGTGCCATATATTTCCAGCA
66 TTAGTGCCATATATTTCCAGCA
* * * **
69246249 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
69246314 TTAGTGCCA
66 TTAGTGCCA
69246323 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
87 63 1.00
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (87 bp):
CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
TTAGTGCCATATATTTCCAGCA
Found at i:69248828 original size:43 final size:43
Alignment explanation
Indices: 69248767--69248852 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
69248757 ATCCTAATTG
*
69248767 GGAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA
1 GGAAAATACTTCCCTTATTCTAATAAACTACTAAAACATAAAA
* *
69248810 GGAAAATACTTCCCTTATTCTAGTAAACTACTAAAAGATAAAA
1 GGAAAATACTTCCCTTATTCTAATAAACTACTAAAACATAAAA
69248853 TAAAAATATT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.48, C:0.16, G:0.08, T:0.28
Consensus pattern (43 bp):
GGAAAATACTTCCCTTATTCTAATAAACTACTAAAACATAAAA
Found at i:69248904 original size:19 final size:18
Alignment explanation
Indices: 69248882--69248921 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
69248872 TGAATAAAAC
69248882 TTATCTACCCAAATAAGAT
1 TTATCTACCCAAATAA-AT
*
69248901 TTATCTACCTAAATAAAT
1 TTATCTACCCAAATAAAT
69248919 TTA
1 TTA
69248922 AAATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.38
Consensus pattern (18 bp):
TTATCTACCCAAATAAAT
Found at i:69253555 original size:43 final size:44
Alignment explanation
Indices: 69253494--69253586 Score: 145
Period size: 43 Copynumber: 2.2 Consensus size: 44
69253484 TCTTAATTGG
69253494 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* * *
69253537 GAAAATAGTTCCTTTATTCTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
69253581 -AAAATA
1 GAAAATA
69253587 TTTCTAGAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 45 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:69253630 original size:19 final size:18
Alignment explanation
Indices: 69253608--69253647 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
69253598 TGAATAAAAA
69253608 TTATCTACCCAAATAAGAT
1 TTATCTACCCAAATAA-AT
*
69253627 TTATCTACCTAAATAAAT
1 TTATCTACCCAAATAAAT
69253645 TTA
1 TTA
69253648 AAATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.38
Consensus pattern (18 bp):
TTATCTACCCAAATAAAT
Found at i:69256183 original size:21 final size:21
Alignment explanation
Indices: 69256159--69256200 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
69256149 TCATCAAATC
*
69256159 TACACCTTAAGGCATCGGGGG
1 TACACCTTAAGGAATCGGGGG
**
69256180 TACAGGTTAAGGAATCGGGGG
1 TACACCTTAAGGAATCGGGGG
69256201 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.17, G:0.38, T:0.19
Consensus pattern (21 bp):
TACACCTTAAGGAATCGGGGG
Found at i:69260173 original size:22 final size:22
Alignment explanation
Indices: 69260147--69260192 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
69260137 AGTGCTTTAA
*
69260147 CAGTAGGTACCAG-AGTGCAAAT
1 CAGTAGATA-CAGAAGTGCAAAT
*
69260169 CAGTAGATACTGAAGTGCAAAT
1 CAGTAGATACAGAAGTGCAAAT
69260191 CA
1 CA
69260193 ATGGGCACCG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (22 bp):
CAGTAGATACAGAAGTGCAAAT
Found at i:69261595 original size:36 final size:35
Alignment explanation
Indices: 69261550--69261649 Score: 121
Period size: 36 Copynumber: 2.8 Consensus size: 35
69261540 GGTTTAACAC
*
69261550 AATGGCATGCTTAACATGCGAATCAGAATCAGAAAA
1 AATGACATGCTTAACATGCGAATCAGAATCAG-AAA
* * * **
69261586 AATGACATGCTTAACATGCGAGTCAAAATTAGATT
1 AATGACATGCTTAACATGCGAATCAGAATCAGAAA
69261621 AAT-AGCATGCTTAACATGCGAATCAGAAT
1 AATGA-CATGCTTAACATGCGAATCAGAAT
69261650 ATCAACATGT
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
34 1 0.02
35 26 0.47
36 28 0.51
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.24
Consensus pattern (35 bp):
AATGACATGCTTAACATGCGAATCAGAATCAGAAA
Found at i:69261682 original size:29 final size:29
Alignment explanation
Indices: 69261626--69261683 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
69261616 AGATTAATAG
*
69261626 CATGCTTAACATGCGAATCAGAATATCAA
1 CATGCTTAACATGCGAATCAGAACATCAA
* * *
69261655 CATGTTTAACATGCGAATTAGTACATCAA
1 CATGCTTAACATGCGAATCAGAACATCAA
69261684 TAATTCAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.28
Consensus pattern (29 bp):
CATGCTTAACATGCGAATCAGAACATCAA
Found at i:69263920 original size:25 final size:26
Alignment explanation
Indices: 69263892--69263955 Score: 121
Period size: 25 Copynumber: 2.5 Consensus size: 26
69263882 ATTTTCTCAT
69263892 CCCTAGTAAAATTATGAAGATTTTA-
1 CCCTAGTAAAATTATGAAGATTTTAC
69263917 CCCTAGTAAAATTATGAAGATTTTAC
1 CCCTAGTAAAATTATGAAGATTTTAC
69263943 CCCTAGTAAAATT
1 CCCTAGTAAAATT
69263956 TCCAAGAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 25 0.66
26 13 0.34
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (26 bp):
CCCTAGTAAAATTATGAAGATTTTAC
Found at i:69272917 original size:66 final size:66
Alignment explanation
Indices: 69272811--69272934 Score: 194
Period size: 66 Copynumber: 1.9 Consensus size: 66
69272801 TTATTGCATT
* *
69272811 AATGTCGCTACATGAGTTAATTCCAGATTGCGTCCAGAATTGTCGCCACACCTGACAGATGTTCA
1 AATGTCACTACATGAGTTAATTCAAGATTGCGTCCAGAATTGTCGCCACACCTGACAGATGTTCA
69272876 C
66 C
* * * *
69272877 AATGTCACTACATGGGTTAATTCAAGATTGCGTTCAGAATTGTCGTCGCACCTGACAG
1 AATGTCACTACATGAGTTAATTCAAGATTGCGTCCAGAATTGTCGCCACACCTGACAG
69272935 CTGTCTAGAT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 52 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (66 bp):
AATGTCACTACATGAGTTAATTCAAGATTGCGTCCAGAATTGTCGCCACACCTGACAGATGTTCA
C
Found at i:69275058 original size:94 final size:95
Alignment explanation
Indices: 69274896--69275088 Score: 325
Period size: 94 Copynumber: 2.0 Consensus size: 95
69274886 GCAATAATTG
***
69274896 TACTAAGTTTTCATGTTTCTTCTCTCACAAACATGATTAAAAATATGCAAGGGACGAGTAGTGTT
1 TACTAAGTTTTCATGTTTCTTCTCTCACAAACATGATTAAAAATATGCAAGGGACGAGTAGCACT
*
69274961 ACACCAAGTCACTCAGCAAGTTCATGTTCC
66 ACACCAAGTCACTCAGCAAGTTCATGTCCC
*
69274991 TACTAAGTTTTCATGTTTCTTCTCTCA-AAACGTGATTAAAAATATGCAAGGGACGAGTAGCACT
1 TACTAAGTTTTCATGTTTCTTCTCTCACAAACATGATTAAAAATATGCAAGGGACGAGTAGCACT
*
69275055 ACACCAAGTCACTCAGTAAGTTCATGTCCC
66 ACACCAAGTCACTCAGCAAGTTCATGTCCC
69275085 TACT
1 TACT
69275089 TTTTCTTGTG
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
94 65 0.71
95 27 0.29
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.31
Consensus pattern (95 bp):
TACTAAGTTTTCATGTTTCTTCTCTCACAAACATGATTAAAAATATGCAAGGGACGAGTAGCACT
ACACCAAGTCACTCAGCAAGTTCATGTCCC
Found at i:69288508 original size:45 final size:46
Alignment explanation
Indices: 69288444--69288618 Score: 225
Period size: 45 Copynumber: 3.8 Consensus size: 46
69288434 TGTAACCCGC
*
69288444 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
69288489 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* * *
69288539 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
69288582 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69288619 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 8, Indels: 19
0.81 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 37 0.33
46 29 0.26
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:69288610 original size:93 final size:92
Alignment explanation
Indices: 69288452--69288622 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 92
69288442 GCCCATAAGT
*
69288452 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCGCTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
69288517 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
*
69288544 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69288609 CGAGTTCGGATGCC
65 CGAGTTCGGATGCC
69288623 CAAATATCCA
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 27 0.36
93 49 0.64
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCGCTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69291049 original size:29 final size:30
Alignment explanation
Indices: 69291000--69291087 Score: 92
Period size: 29 Copynumber: 3.0 Consensus size: 30
69290990 CAAAGATAAC
69291000 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
69291029 GAGAAACCCAGAATAAA-AAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
69291058 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
69291088 CGATACTATG
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
28 2 0.04
29 29 0.60
30 15 0.31
31 2 0.04
ACGTcount: A:0.58, C:0.16, G:0.16, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:69291068 original size:15 final size:15
Alignment explanation
Indices: 69291000--69291078 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
69290990 CAAAGATAAC
*
69291000 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
69291014 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
69291029 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
69291044 AA-AAATCCAGAATA
1 AAGAAATCCAGAATA
* *
69291058 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
69291073 AAGAAA
1 AAGAAA
69291079 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 22 0.42
15 30 0.57
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.16, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:69291087 original size:15 final size:15
Alignment explanation
Indices: 69291011--69291087 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
69291001 AGAAAACCGA
69291011 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
69291026 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
69291040 AATAAA-AAATCC-AG
1 -ATAAAGAAATCCAAG
* *
69291054 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
69291070 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
69291085 ATA
1 ATA
69291088 CGATACTATG
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
14 15 0.30
15 34 0.68
16 1 0.02
ACGTcount: A:0.57, C:0.16, G:0.16, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:69294111 original size:93 final size:93
Alignment explanation
Indices: 69293999--69294170 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69293989 GCCCATAAGT
* *
69293999 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69294064 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
69294092 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69294157 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
69294171 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69294166 original size:46 final size:46
Alignment explanation
Indices: 69293991--69294166 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
69293981 TGTAACCCGC
* * *
69293991 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
69294037 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
69294087 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
69294130 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69294167 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:69301110 original size:48 final size:50
Alignment explanation
Indices: 69301020--69301117 Score: 137
Period size: 48 Copynumber: 2.0 Consensus size: 50
69301010 GCTATCGGCT
* * *
69301020 TCGATATATGTGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
1 TCGATATATGTGGTCCCATATAAGACCATATCTAGGACATGGCATTGGCA
* *
69301070 TCGATA-A-GTGGTCCCATATAAGGCCATATCTAGGATATGGCATTGGCA
1 TCGATATATGTGGTCCCATATAAGACCATATCTAGGACATGGCATTGGCA
69301118 CCCTACCATG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
48 36 0.84
49 1 0.02
50 6 0.14
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (50 bp):
TCGATATATGTGGTCCCATATAAGACCATATCTAGGACATGGCATTGGCA
Found at i:69313246 original size:27 final size:27
Alignment explanation
Indices: 69313213--69313274 Score: 92
Period size: 26 Copynumber: 2.3 Consensus size: 27
69313203 ATTAACTAAA
69313213 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
*
69313240 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
69313266 ATACCCCTA
1 ATACCCCTA
69313275 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 2 0.06
26 22 0.69
27 8 0.25
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:69313419 original size:28 final size:28
Alignment explanation
Indices: 69313379--69313468 Score: 139
Period size: 28 Copynumber: 3.3 Consensus size: 28
69313369 GGAGGAAGCG
*
69313379 TTCTAGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
69313407 TTCTGGTGGCTATGCCACAAATATCTG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
69313434 TTCTGGTGGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
69313461 ATCTGGTG
1 TTCTGGTG
69313469 ACTCTGTTAC
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
26 8 0.14
27 24 0.41
28 26 0.45
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:69313449 original size:27 final size:26
Alignment explanation
Indices: 69313378--69313492 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 26
69313368 TGGAGGAAGC
*
69313378 GTTCTAGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
69313405 GTTTCTGGTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCAC-AATATCT
*
69313433 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * ** *
69313459 GTATCTGGTGACTCTGTTACAATACCT
1 GT-TCTGGTGGCTATGCCACAATATCT
69313486 GTTCTGG
1 GTTCTGG
69313493 CAGCCATGAT
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 14 0.17
27 40 0.50
28 26 0.32
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:69314155 original size:20 final size:20
Alignment explanation
Indices: 69314130--69314169 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
69314120 TCCATGAACA
69314130 AACACTCAGTTAAAGTGTGG
1 AACACTCAGTTAAAGTGTGG
69314150 AACACTCAGTTAAAGTGTGG
1 AACACTCAGTTAAAGTGTGG
69314170 CAATGGTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (20 bp):
AACACTCAGTTAAAGTGTGG
Found at i:69316414 original size:63 final size:63
Alignment explanation
Indices: 69316336--69316462 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
69316326 GGCAAGAGAG
69316336 CTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGA
1 CTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGA
69316399 CTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGA
1 CTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGA
69316462 C
1 C
69316463 AAGAGAGCTA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (63 bp):
CTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGA
Found at i:69322823 original size:17 final size:16
Alignment explanation
Indices: 69322801--69322833 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
69322791 CCCTTCTCAC
69322801 CTTTTCTTTTCTTCCAT
1 CTTTTCTTTTC-TCCAT
69322818 CTTTTCTTTTCTCCAT
1 CTTTTCTTTTCTCCAT
69322834 AGCCGAACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.06, C:0.30, G:0.00, T:0.64
Consensus pattern (16 bp):
CTTTTCTTTTCTCCAT
Found at i:69323783 original size:27 final size:26
Alignment explanation
Indices: 69323753--69323816 Score: 92
Period size: 26 Copynumber: 2.4 Consensus size: 26
69323743 AATTTACTAA
69323753 ATACCCCTAAGTATGAAAATTACCATT
1 ATACCCCTAAGTAT-AAAATTACCATT
* * *
69323780 ATACCCTTAGGTGTAAAATTACCATT
1 ATACCCCTAAGTATAAAATTACCATT
69323806 ATACCCCTAAG
1 ATACCCCTAAG
69323817 GTTAATTTTG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 21 0.66
27 11 0.34
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (26 bp):
ATACCCCTAAGTATAAAATTACCATT
Found at i:69323959 original size:28 final size:28
Alignment explanation
Indices: 69323919--69324008 Score: 130
Period size: 28 Copynumber: 3.3 Consensus size: 28
69323909 GGAGGAAGCG
*
69323919 TTCTAGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
69323947 TTCTGGTGGCTATACCACAAATATCTG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
69323974 TTCTGGTGGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
69324001 ATCTGGTG
1 TTCTGGTG
69324009 ACTTTGTCGC
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
26 8 0.14
27 23 0.41
28 25 0.45
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:69324022 original size:27 final size:26
Alignment explanation
Indices: 69323931--69324011 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 26
69323921 CTAGTGGCTA
* *
69323931 TGCCACAAATATCTGTTTCTGGTGGCTA
1 TGCCAC-AATATCTG-TTCTGGTGACTC
* *
69323959 TACCACAAATATCTGTTCTGGTGGCTC
1 TGCCAC-AATATCTGTTCTGGTGACTC
69323986 TGCCACAATATCTGTATCTGGTGACT
1 TGCCACAATATCTGT-TCTGGTGACT
69324012 TTGTCGCAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
26 9 0.19
27 25 0.52
28 14 0.29
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTC
Found at i:69324492 original size:10 final size:10
Alignment explanation
Indices: 69324460--69324485 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
69324450 ATAAGGCCGC
69324460 TTTAATTGCT
1 TTTAATTGCT
69324470 TTTAATTGCT
1 TTTAATTGCT
69324480 TTTAAT
1 TTTAAT
69324486 ATGTTTTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62
Consensus pattern (10 bp):
TTTAATTGCT
Found at i:69326740 original size:23 final size:23
Alignment explanation
Indices: 69326706--69326751 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
69326696 CTACGATTTA
*
69326706 GTCGATTTTAGGACTAACGTAGC
1 GTCGATTCTAGGACTAACGTAGC
69326729 GTCGATTCTAGGACTAACGTAGC
1 GTCGATTCTAGGACTAACGTAGC
69326752 ACGTGTGAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (23 bp):
GTCGATTCTAGGACTAACGTAGC
Found at i:69338597 original size:46 final size:46
Alignment explanation
Indices: 69338403--69338583 Score: 242
Period size: 46 Copynumber: 3.9 Consensus size: 46
69338393 TGTAACCCAC
* * *
69338403 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
69338449 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
69338499 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
69338542 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
69338584 AACCATCCTA
Statistics
Matches: 117, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 73 0.62
47 32 0.27
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:69344100 original size:15 final size:15
Alignment explanation
Indices: 69344023--69344100 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
69344013 AGAAAACTGA
69344023 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
69344038 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
*
69344052 AATAAAGAAATTC-AG
1 -ATAAAGAAATCCAAG
* *
69344067 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
69344083 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
69344098 ATA
1 ATA
69344101 CGATACTATG
Statistics
Matches: 48, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
14 3 0.06
15 43 0.90
16 2 0.04
ACGTcount: A:0.55, C:0.14, G:0.18, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:69347165 original size:93 final size:93
Alignment explanation
Indices: 69347053--69347223 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
69347043 GCCCATAAGT
* *
69347053 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69347118 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
69347146 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69347211 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69347224 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69347239 original size:46 final size:46
Alignment explanation
Indices: 69347045--69347225 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
69347035 TGTAACCCGC
* * *
69347045 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
69347091 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
69347141 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
69347184 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
69347226 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:69351884 original size:16 final size:16
Alignment explanation
Indices: 69351863--69351894 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
69351853 AAAATAAGAG
69351863 TTATTCACTACAACAA
1 TTATTCACTACAACAA
69351879 TTATTCACTACAACAA
1 TTATTCACTACAACAA
69351895 CTTCGTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (16 bp):
TTATTCACTACAACAA
Found at i:69352348 original size:35 final size:35
Alignment explanation
Indices: 69352316--69352481 Score: 147
Period size: 35 Copynumber: 4.7 Consensus size: 35
69352306 AGTTTATTGG
*
69352316 TATTTTGATTCGCATGTTAAGCATGCTATTATTCT
1 TATTATGATTCGCATGTTAAGCATGCTATTATTCT
* * *
69352351 TATTATGATTCGCATGTTAACCATGCTATTTTTTT
1 TATTATGATTCGCATGTTAAGCATGCTATTATTCT
** * * * *
69352386 TATTATGATTTTCATGTTAAGAATGCCACTATACT
1 TATTATGATTCGCATGTTAAGCATGCTATTATTCT
* * * *
69352421 TATTTTGATTTGCATGTAAAGCATG-TCACTATGT-T
1 TATTATGATTCGCATGTTAAGCATGCT-ATTAT-TCT
* * *
69352456 GATTCTGATTCGCATGTAAAGCATGC
1 TATTATGATTCGCATGTTAAGCATGC
69352482 CTACTAAAAA
Statistics
Matches: 106, Mismatches: 22, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
35 106 1.00
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.45
Consensus pattern (35 bp):
TATTATGATTCGCATGTTAAGCATGCTATTATTCT
Found at i:69352472 original size:70 final size:70
Alignment explanation
Indices: 69352321--69352487 Score: 165
Period size: 70 Copynumber: 2.4 Consensus size: 70
69352311 ATTGGTATTT
* * * * * * *
69352321 TGATTCGCATGTTAAGCATGCTATTATTCTTATTATGATTCGCATGTTAACCATGCTATTTTTTT
1 TGATTCGCATGTTAAGCATGCCACTATACTTATTATGATTCGCATGTAAACCATGCTACTATGTT
*
69352386 TATTA
66 GATTA
** * * * *
69352391 TGATTTTCATGTTAAGAATGCCACTATACTTATTTTGATTTGCATGTAAAGCATG-TCACTATGT
1 TGATTCGCATGTTAAGCATGCCACTATACTTATTATGATTCGCATGTAAACCATGCT-ACTATGT
*
69352455 TGATTC
65 TGATTA
*
69352461 TGATTCGCATGTAAAGCATGCCTACTA
1 TGATTCGCATGTTAAGCATGCC-ACTA
69352488 AAAATTTTGT
Statistics
Matches: 76, Mismatches: 19, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
69 1 0.01
70 71 0.93
71 4 0.05
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.43
Consensus pattern (70 bp):
TGATTCGCATGTTAAGCATGCCACTATACTTATTATGATTCGCATGTAAACCATGCTACTATGTT
GATTA
Found at i:69364396 original size:25 final size:25
Alignment explanation
Indices: 69364368--69364417 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
69364358 CTCGTGATAG
*
69364368 AAATGCTCACACGAGCTGTGAATAT
1 AAATGCTCACACGAACTGTGAATAT
*
69364393 AAATGCTTACACGAACTGTGAATAT
1 AAATGCTCACACGAACTGTGAATAT
69364418 GGCCCTACTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (25 bp):
AAATGCTCACACGAACTGTGAATAT
Found at i:69370483 original size:49 final size:49
Alignment explanation
Indices: 69370353--69370485 Score: 178
Period size: 49 Copynumber: 2.7 Consensus size: 49
69370343 GCACATTAAA
* * * *
69370353 GTCGATGTCATGTCCCAGACAGGTCTTACACTAACTTTCATGTATTGAG
1 GTCGATGTCATGTCCCAGACAGGTCTTACACTGACTCTCATCTATTCAG
** *
69370402 GTCGATACCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTA-TCAG
1 GTCGATGTCATGTCCCAGACAGGTCTTACACTGACTCTCATCTATTCAG
*
69370450 TGTCGATGTCATATCCCAGACAGGTCTTACACTGAC
1 -GTCGATGTCATGTCCCAGACAGGTCTTACACTGAC
69370486 ACACAACAAG
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
48 3 0.04
49 69 0.96
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (49 bp):
GTCGATGTCATGTCCCAGACAGGTCTTACACTGACTCTCATCTATTCAG
Found at i:69370599 original size:44 final size:46
Alignment explanation
Indices: 69370503--69370623 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 46
69370493 AAGCTGACGC
* * * *
69370503 CATGTCCCAGACAGGTCTTACACTAGCTTGTATGTCTCGAGGCCAATG
1 CATGT-CCAGACATGTCTTACACTAGC-TCTACGTCTCAAGGCCAATG
* *
69370551 CATGT-CAGACATGTCTTACACTAGCTCT-CGTCTCAATGCCGATG
1 CATGTCCAGACATGTCTTACACTAGCTCTACGTCTCAAGGCCAATG
*
69370595 CATGTCCCAGACATGTCTTACACTGGCTC
1 CATGT-CCAGACATGTCTTACACTAGCTC
69370624 ACATACCACC
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
44 17 0.27
45 2 0.03
46 40 0.62
48 5 0.08
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
CATGTCCAGACATGTCTTACACTAGCTCTACGTCTCAAGGCCAATG
Found at i:69377801 original size:35 final size:35
Alignment explanation
Indices: 69377762--69377831 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
69377752 ATACGGGTGT
* *
69377762 ATGTCTCAGCCTTGTGGATGACACGGCCTCAGGCA
1 ATGTCTCAGCCGTGCGGATGACACGGCCTCAGGCA
69377797 ATGTCTCAGCCGTGCGGATGACACGGCCTCAGGCA
1 ATGTCTCAGCCGTGCGGATGACACGGCCTCAGGCA
69377832 TAGGCGTGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (35 bp):
ATGTCTCAGCCGTGCGGATGACACGGCCTCAGGCA
Found at i:69388695 original size:71 final size:71
Alignment explanation
Indices: 69388609--69388772 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
69388599 CGATTTGTCT
69388609 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
69388674 CTTTCA
66 CTTTCA
69388680 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
69388745 CTTTCA
66 CTTTCA
69388751 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
69388773 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:69388810 original size:71 final size:70
Alignment explanation
Indices: 69388609--69388806 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
69388599 CGATTTGTCT
* * * *
69388609 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
69388674 CTTTCA
65 CTTTCA
* * * *
69388680 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
69388745 CTTTCA
65 CTTTCA
* *
69388751 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
69388807 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:69395732 original size:71 final size:71
Alignment explanation
Indices: 69395646--69395809 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
69395636 CGATTTGTCT
69395646 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
69395711 CTTTCA
66 CTTTCA
69395717 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
69395782 CTTTCA
66 CTTTCA
69395788 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
69395810 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:69395847 original size:71 final size:70
Alignment explanation
Indices: 69395646--69395843 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
69395636 CGATTTGTCT
* * * *
69395646 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
69395711 CTTTCA
65 CTTTCA
* * * *
69395717 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
69395782 CTTTCA
65 CTTTCA
* *
69395788 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
69395844 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:69397787 original size:27 final size:27
Alignment explanation
Indices: 69397755--69397823 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
69397745 TGGATTCCAA
* *
69397755 CCAAACACACAAGAATACATAATCGTC
1 CCAAACACACAAGAATAAATAATCCTC
*
69397782 CCAAACGCACCAA-AATAAATAATCCTC
1 CCAAACACA-CAAGAATAAATAATCCTC
*
69397809 CCAAACACACCAGAA
1 CCAAACACACAAGAA
69397824 ACCCATTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 2 0.06
27 30 0.86
28 3 0.09
ACGTcount: A:0.49, C:0.33, G:0.06, T:0.12
Consensus pattern (27 bp):
CCAAACACACAAGAATAAATAATCCTC
Found at i:69403123 original size:15 final size:15
Alignment explanation
Indices: 69403071--69403126 Score: 58
Period size: 15 Copynumber: 3.6 Consensus size: 15
69403061 TATGGTACTG
*
69403071 TATCTTGGATTTCTG
1 TATCTTGGATTTCTC
* *
69403086 AATCTTGGGAGTTTCTT
1 TATCTT-GGA-TTTCTC
69403103 TATCTTGGATTTCTC
1 TATCTTGGATTTCTC
*
69403118 TGTCTTGGA
1 TATCTTGGA
69403127 CCTCTTTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
15 18 0.53
16 6 0.18
17 10 0.29
ACGTcount: A:0.14, C:0.14, G:0.21, T:0.50
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:69414655 original size:26 final size:26
Alignment explanation
Indices: 69414626--69414678 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
69414616 AGTTTGGCAA
69414626 TGCTTTTGAGAAGTGCTATGGAAAAG
1 TGCTTTTGAGAAGTGCTATGGAAAAG
* * *
69414652 TGCTTTTGGGAAGTGCTTTTGAAAAG
1 TGCTTTTGAGAAGTGCTATGGAAAAG
69414678 T
1 T
69414679 TTGGTTTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.08, G:0.30, T:0.36
Consensus pattern (26 bp):
TGCTTTTGAGAAGTGCTATGGAAAAG
Found at i:69414678 original size:13 final size:13
Alignment explanation
Indices: 69414626--69414678 Score: 61
Period size: 13 Copynumber: 4.1 Consensus size: 13
69414616 AGTTTGGCAA
*
69414626 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* *
69414639 TGCTATGGAAAAG
1 TGCTTTTGAAAAG
**
69414652 TGCTTTTGGGAAG
1 TGCTTTTGAAAAG
69414665 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
69414678 T
1 T
69414679 TTGGTTTAAA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.26, C:0.08, G:0.30, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:69415025 original size:17 final size:18
Alignment explanation
Indices: 69415005--69415038 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
69414995 AATTGTATTA
69415005 TTTTAA-AAATGATTTTT
1 TTTTAATAAATGATTTTT
*
69415022 TTTTAATTAATGATTTT
1 TTTTAATAAATGATTTT
69415039 AACACATTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (18 bp):
TTTTAATAAATGATTTTT
Found at i:69415337 original size:12 final size:12
Alignment explanation
Indices: 69415316--69415354 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
69415306 ATTGTTTGAT
69415316 TCACCGTCATCA
1 TCACCGTCATCA
* *
69415328 TCACCATCATCG
1 TCACCGTCATCA
*
69415340 TCATCGTCATCA
1 TCACCGTCATCA
69415352 TCA
1 TCA
69415355 TCACTTTCTC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.26, C:0.38, G:0.08, T:0.28
Consensus pattern (12 bp):
TCACCGTCATCA
Found at i:69415343 original size:18 final size:18
Alignment explanation
Indices: 69415320--69415356 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
69415310 TTTGATTCAC
69415320 CGTCATCATCACCATCAT
1 CGTCATCATCACCATCAT
* *
69415338 CGTCATCGTCATCATCAT
1 CGTCATCATCACCATCAT
69415356 C
1 C
69415357 ACTTTCTCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.38, G:0.08, T:0.30
Consensus pattern (18 bp):
CGTCATCATCACCATCAT
Found at i:69415982 original size:26 final size:26
Alignment explanation
Indices: 69415953--69416060 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
69415943 TGGTACAAAT
69415953 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
69415979 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
69416005 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
69416031 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
69416057 TGAT
1 TGAT
69416061 GGACATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:69417544 original size:28 final size:26
Alignment explanation
Indices: 69417502--69417576 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
69417492 AAAATCAGCT
* *
69417502 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGGA
* * *
69417530 AAATTACTGTTATACCCTTAGGTGTA
1 AAATTACTGTTATACCCCTAGATGGA
*
69417556 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
69417577 GGTTAATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 22 0.55
27 1 0.03
28 17 0.43
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGGA
Found at i:69417760 original size:54 final size:54
Alignment explanation
Indices: 69417678--69417821 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
69417668 TGGAGGAAGC
69417678 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
69417732 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
69417786 GTTCTGGTGGCTCTTCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
69417822 ACTTCGTCAC
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 6 0.07
54 80 0.93
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:69417817 original size:32 final size:27
Alignment explanation
Indices: 69417681--69417821 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
69417671 AGGAAGCGTC
*
69417681 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
69417708 CTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTCTGCCACATATATCTGAT
*
69417734 CCTGGTGGCTATGCCACA-ATTATCTGAT
1 -CTGGTGGCTCTGCCACATA-TATCTGAT
*
69417762 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
69417789 CTGGTGGCTCTTCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
69417816 CTGGTG
1 CTGGTG
69417822 ACTTCGTCAC
Statistics
Matches: 102, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
26 9 0.09
27 90 0.88
28 3 0.03
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:69417832 original size:27 final size:26
Alignment explanation
Indices: 69417694--69417839 Score: 120
Period size: 27 Copynumber: 5.4 Consensus size: 26
69417684 GTGGCTATGC
*
69417694 CACAATTATCTG-ATCTGGTGGCTCTGC
1 CACAA-TATCTGTATCTGGTGGCTC-GT
* * *
69417721 CACATATATCTGT-CCTGGTGGCTATGC
1 CACA-ATATCTGTATCTGGTGGCT-CGT
*
69417748 CACAATTATCTG-ATCTGGTGGCTCTGC
1 CACAA-TATCTGTATCTGGTGGCTC-GT
*
69417775 CACATATATCTGT-TCTGGTGGCTCTT
1 CACA-ATATCTGTATCTGGTGGCTCGT
*
69417801 CCACAATATCTGTATCTGGTGACTTCGT
1 -CACAATATCTGTATCTGGTGGC-TCGT
69417829 CACAATATCTG
1 CACAATATCTG
69417840 GCAGCCTCGC
Statistics
Matches: 100, Mismatches: 8, Indels: 22
0.77 0.06 0.17
Matches are distributed among these distances:
26 9 0.09
27 86 0.86
28 5 0.05
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (26 bp):
CACAATATCTGTATCTGGTGGCTCGT
Found at i:69417833 original size:81 final size:80
Alignment explanation
Indices: 69417681--69417839 Score: 207
Period size: 81 Copynumber: 2.0 Consensus size: 80
69417671 AGGAAGCGTC
*
69417681 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
69417746 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * * *
69417762 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTTCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
*
69417825 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
69417840 GCAGCCTCGC
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
80 17 0.25
81 52 0.75
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:69419268 original size:15 final size:15
Alignment explanation
Indices: 69419242--69419274 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
69419232 TTAGTCGACC
69419242 AAAAATATTAAAATAT
1 AAAAATATTAAAAT-T
69419258 AAAAATA-TAAAATT
1 AAAAATATTAAAATT
69419272 AAA
1 AAA
69419275 TTTTAACCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 6 0.35
16 7 0.41
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
AAAAATATTAAAATT
Found at i:69420078 original size:72 final size:72
Alignment explanation
Indices: 69419834--69420170 Score: 369
Period size: 72 Copynumber: 4.7 Consensus size: 72
69419824 TCACCTGTGA
* * * *
69419834 ATAAATTCTATATCC-AAAATCATATATAAACAACTATTGATAAAACTA-ATTTAGT--ATAAAT
1 ATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGA-TTA-TCCATAAAT
69419895 AAGTAGAAC
64 AAGTAGAAC
* * * ** **
69419904 ATAAATTTAATATCCAAAAATCAAACATAAACAATTATTGATAAAACTAGCCCTAAGCATAAATA
1 ATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG-ATTATCCATAAATA
* *
69419969 ATTAGACC
65 AGTAGAAC
* * *
69419977 ATAAATTCAATATCCAAAGACTAAACATAAACAACTATTGATAAAACTAGATTATCCATAATTAA
1 ATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTATCCATAAATAA
* *
69420042 ATAGAAT
66 GTAGAAC
* * * * *
69420049 ATAAATTCAATATTCAAAAACCAAACATAAGCAGCCATTGATAAAACTAGATTA-CACATAGATA
1 ATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTATC-CATAAATA
69420113 AGTAGAAC
65 AGTAGAAC
* * *
69420121 ATAAATTCAATTTCCGAAAACCAAACATAAATAACTATTGATAAAACTAG
1 ATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
69420171 TTTAGCATTG
Statistics
Matches: 221, Mismatches: 40, Indels: 10
0.82 0.15 0.04
Matches are distributed among these distances:
70 13 0.06
71 31 0.14
72 119 0.54
73 58 0.26
ACGTcount: A:0.52, C:0.15, G:0.07, T:0.27
Consensus pattern (72 bp):
ATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTATCCATAAATAA
GTAGAAC
Found at i:69420618 original size:18 final size:18
Alignment explanation
Indices: 69420595--69420661 Score: 77
Period size: 18 Copynumber: 3.9 Consensus size: 18
69420585 CGTTTCCATC
69420595 AATGTGAACATCATTTGA
1 AATGTGAACATCATTTGA
69420613 AATGTG---ATCATTTGA
1 AATGTGAACATCATTTGA
* *
69420628 AATCTGAACATCATTTAA
1 AATGTGAACATCATTTGA
* *
69420646 AATGTAAATATCATTT
1 AATGTGAACATCATTT
69420662 CTCACATTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
15 14 0.34
18 27 0.66
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.37
Consensus pattern (18 bp):
AATGTGAACATCATTTGA
Done.