Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 223 of 325
Found at i:69421911 original size:27 final size:27
Alignment explanation
Indices: 69421880--69421932 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
69421870 GATTGTAAAA
69421880 AGCACATGCAGAATATTAAAAAAATAT
1 AGCACATGCAGAATATTAAAAAAATAT
69421907 AGCACATGCAGAATATTAAAAAAATA
1 AGCACATGCAGAATATTAAAAAAATA
69421933 CCTTGTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.57, C:0.11, G:0.11, T:0.21
Consensus pattern (27 bp):
AGCACATGCAGAATATTAAAAAAATAT
Found at i:69428599 original size:21 final size:20
Alignment explanation
Indices: 69428557--69428600 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
69428547 TTGAATTTAA
**
69428557 CTATCAATTTTTTTAAAAAG
1 CTATCAATTTTTCGAAAAAG
*
69428577 CTATCAATCTTTTCGAAAGAG
1 CTATCAAT-TTTTCGAAAAAG
69428598 CTA
1 CTA
69428601 AATTGTTGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (20 bp):
CTATCAATTTTTCGAAAAAG
Found at i:69428720 original size:15 final size:16
Alignment explanation
Indices: 69428700--69428732 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
69428690 ATTTTCTTAA
69428700 ATTTTTAAAT-TTTTT
1 ATTTTTAAATATTTTT
69428715 ATTTTTAAATATTTTT
1 ATTTTTAAATATTTTT
69428731 AT
1 AT
69428733 ATTATTTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
ATTTTTAAATATTTTT
Found at i:69431173 original size:21 final size:21
Alignment explanation
Indices: 69431147--69431190 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
69431137 GGTTGAAGAA
69431147 ATCCAAGGTATGCATTCATTC
1 ATCCAAGGTATGCATTCATTC
69431168 ATCCAAGGTATGCATTCATTC
1 ATCCAAGGTATGCATTCATTC
69431189 AT
1 AT
69431191 TGTGTCTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.34
Consensus pattern (21 bp):
ATCCAAGGTATGCATTCATTC
Found at i:69431750 original size:38 final size:38
Alignment explanation
Indices: 69431699--69431777 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
69431689 ACTGGTTCAA
69431699 GTTAGTTTATTTGCTTGTTATGCTCAGTGGAATGACTG
1 GTTAGTTTATTTGCTTGTTATGCTCAGTGGAATGACTG
69431737 GTTAGTTTATTTGCTTGTTATGCTCAGTGGAATGACTG
1 GTTAGTTTATTTGCTTGTTATGCTCAGTGGAATGACTG
69431775 GTT
1 GTT
69431778 TACAATGCTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.18, C:0.10, G:0.27, T:0.46
Consensus pattern (38 bp):
GTTAGTTTATTTGCTTGTTATGCTCAGTGGAATGACTG
Found at i:69434995 original size:217 final size:217
Alignment explanation
Indices: 69434620--69435056 Score: 829
Period size: 217 Copynumber: 2.0 Consensus size: 217
69434610 GCTTGTCCGC
69434620 TTTGAAAACTCCGTATCCTTGCTGTAACTGCAATTACATAACTACCTATTGTTTAACTTATATTA
1 TTTGAAAACTCCGTATCCTTGCTGTAACTGCAATTACATAACTACCTATTGTTTAACTTATATTA
69434685 TCTGCCAACTTAGCAGCCTCCGTGTCAGCAGAGTACTCATTAAATCAATTTACGGAGAAGATACA
66 TCTGCCAACTTAGCAGCCTCCGTGTCAGCAGAGTACTCATTAAATCAATTTACGGAGAAGATACA
* * * *
69434750 GGAATTTTACTTTTTATGTGAAATGCTTTTTCGAACCAAGTTATCCTCTTTAAGTTTTCAGCATC
131 GGAATTTTACTTTTCATGTGAAATGCTTTTTCCAACCAAGTTATACTCTTTAAGATTTCAGCATC
*
69434815 TTTGTACTGAGGCAAACATGAT
196 TTTGTACTCAGGCAAACATGAT
69434837 TTTGAAAACTCCGTATCCTTGCTGTAACTGCAATTACATAACTACCTATTGTTTAACTTATATTA
1 TTTGAAAACTCCGTATCCTTGCTGTAACTGCAATTACATAACTACCTATTGTTTAACTTATATTA
69434902 TCTGCCAACTTAGCAGCCTCCGTGTCAGCAGAGTACTCATTAAATCAATTTACGGAGAAGATACA
66 TCTGCCAACTTAGCAGCCTCCGTGTCAGCAGAGTACTCATTAAATCAATTTACGGAGAAGATACA
69434967 GGAATTTTACTTTTCATGTGAAATGCTTTTTCCAACCAAGTTATACTCTTTAAGATTTCAGCATC
131 GGAATTTTACTTTTCATGTGAAATGCTTTTTCCAACCAAGTTATACTCTTTAAGATTTCAGCATC
69435032 TTTGTACTCAGGCAAACATGAT
196 TTTGTACTCAGGCAAACATGAT
69435054 TTT
1 TTT
69435057 TCGATTGACA
Statistics
Matches: 215, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
217 215 1.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (217 bp):
TTTGAAAACTCCGTATCCTTGCTGTAACTGCAATTACATAACTACCTATTGTTTAACTTATATTA
TCTGCCAACTTAGCAGCCTCCGTGTCAGCAGAGTACTCATTAAATCAATTTACGGAGAAGATACA
GGAATTTTACTTTTCATGTGAAATGCTTTTTCCAACCAAGTTATACTCTTTAAGATTTCAGCATC
TTTGTACTCAGGCAAACATGAT
Found at i:69448974 original size:22 final size:22
Alignment explanation
Indices: 69448949--69448991 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
69448939 CTGCTAAACA
*
69448949 TGTCCTC-AAGATCACGTGACCT
1 TGTCCTCGAAGA-CAAGTGACCT
69448971 TGTCCTCGAAGACAAGTGACC
1 TGTCCTCGAAGACAAGTGACC
69448992 AACATAAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (22 bp):
TGTCCTCGAAGACAAGTGACCT
Found at i:69451918 original size:131 final size:130
Alignment explanation
Indices: 69451628--69452121 Score: 433
Period size: 131 Copynumber: 3.8 Consensus size: 130
69451618 TTGCCTCACC
* * * * * * ** * *
69451628 TTAGAAAACACGAGTGAAATTTCGAAGAGATATTCAATTATTTTGAACAAACGGGAGATTGCGAC
1 TTAGGAAACATGAGTGAAATTTTGAAGGGATATTCGATTA-TTTGAACAAATGAAAAATTGCAAC
* * * * * ** *
69451693 CCAGCACGATAGGGCACTATTCCTCGAATTGCCAATCATCGAACATTTCTTTCGTTTTAAAGAGT
65 CCAACACGATAGGGCACGATTCCTCAAATTGCCAAACATTGAACATCACCTTCGTTTTAAAGA-T
69451758 TT
129 TT
* ** * * **
69451760 TT-GGAAAAAGTGAGTGAAATTCCGAAGGGATCTTCGATTGTTTCGAACAAATGAAAAAGCGCAA
1 TTAGGAAACA-TGAGTGAAATTTTGAAGGGATATTCGATTATTT-GAACAAATGAAAAATTGCAA
*
69451824 CCCAGCACGATAGGGCACGATT-CTCAAATTGCCAAACATTGAACATCACCTTCGTTTTGAAAGA
64 CCCAACACGATAGGGCACGATTCCTCAAATTGCCAAACATTGAACATCACCTTCGTTTT-AAAGA
69451888 TTT
128 TTT
* * * * *
69451891 TTAGGAAACCTGAGTGAAATTTTGAAGGGATATTTGATTATTTTAAGCAAACGAGAAATTGCAAC
1 TTAGGAAACATGAGTGAAATTTTGAAGGGATATTCGATTATTTGAA-CAAATGAAAAATTGCAAC
* * * * * * * **
69451956 CCAACACGTTAGGGCACGATTCCACGAATTGCCAAATA-TCACACATCGCCTTCG-TTTAAGGGG
65 CCAACACGATAGGGCACGATTCCTCAAATTGCCAAACATTGA-ACATCACCTTCGTTTTAAAGAT
69452019 TT
129 TT
* * * *
69452021 TTA-AAAGACATAAGTGAAATTTTGAAGTGATATTCGATTATTTTGAGCAAAT-AAGAAATTGCA
1 TTAGGAA-ACATGAGTGAAATTTTGAAGGGATATTCGATTA-TTTGAACAAATGAA-AAATTGCA
* * *
69452084 ACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAA
63 ACCCAACACGATAGGGCACGATTCCTCAAATTGCCAAA
69452122 TACCAAATCT
Statistics
Matches: 298, Mismatches: 54, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
129 3 0.01
130 88 0.30
131 113 0.38
132 94 0.32
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (130 bp):
TTAGGAAACATGAGTGAAATTTTGAAGGGATATTCGATTATTTGAACAAATGAAAAATTGCAACC
CAACACGATAGGGCACGATTCCTCAAATTGCCAAACATTGAACATCACCTTCGTTTTAAAGATTT
Found at i:69453237 original size:2 final size:2
Alignment explanation
Indices: 69453230--69453260 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
69453220 AGAGATAATA
69453230 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
69453261 GGTTTAGTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:69455137 original size:44 final size:44
Alignment explanation
Indices: 69455074--69455590 Score: 646
Period size: 44 Copynumber: 11.6 Consensus size: 44
69455064 CGGGAACACC
* * * * *
69455074 AATCTGTTATTTTTGATCTGCTCTCTGCTAATACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
69455118 AATCTG-TCATCTTCGATCTGCTCTCTGTCAACACAGAGATGCCA
1 AATCTGCT-ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * *
69455162 AATCTACTATCTTCGATCTGCCCTCTGACAATACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * **
69455206 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGATACCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
**
69455250 AATCTGCTATCTTCGATCTGCTCTCCACCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
69455294 AATTTGCTATCTTCGATCTGCTCCCTGCCAATACAGAGACGCC-
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
** *
69455337 AATCTATTATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
69455381 AATCTGATATCTTTGATCTGCTCT-TCACCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCT-GCCAATACAGAGACGCCA
* *
69455425 AATCTGCTATCTACGATCTGCTCTCTGCTAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
69455469 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
*
69455513 AATCTGCTATCTTCGATCTGCTCTCCAAAT-CTTACTATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCT-C---TGC---CAATACAGAGACGCCA
* *
69455563 AATTTGCTATCTTCGATCTGCTCCCTGC
1 AATCTGCTATCTTCGATCTGCTCTCTGC
69455591 TTATCTTCGA
Statistics
Matches: 419, Mismatches: 41, Indels: 23
0.87 0.08 0.05
Matches are distributed among these distances:
43 40 0.10
44 334 0.80
45 3 0.01
46 1 0.00
47 2 0.00
48 1 0.00
49 1 0.00
50 37 0.09
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (44 bp):
AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
Found at i:69455511 original size:219 final size:220
Alignment explanation
Indices: 69455074--69455535 Score: 660
Period size: 219 Copynumber: 2.1 Consensus size: 220
69455064 CGGGAACACC
* * * * * * *
69455074 AATCTGTTATTTTTGATCTGCTCTCTGCTAATACAGAGATGCCAAATCTGTCATCTTCGATCTGC
1 AATCTGCTATCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTATCATCTTCGATCTGC
* * * *
69455139 TCTCTGTCAACACAGAGATGCCAAATCTACTATCTTCGATCTGCCCTCTGACAATACAGAGATGC
66 TCTCTGCCAACACAGAGACGCCAAATCTACTATCTTCGATCTGCCCTCTCACAATACAGAGACGC
** *
69455204 CAAATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGATACCAAATCTGCTATCTTCGATCT
131 CAAATCTGCTATCTACGATCTGCTCTCCGCCAATACAGAGACACCAAATCTGCTATCTTCGATCT
69455269 GCTCTCCACCAATACAGAGACGCCA
196 GCTCTCCACCAATACAGAGACGCCA
* * *
69455294 AATTTGCTATCTTCGATCTGCTCCCTGCCAATACAGAGACGCC-AATCTATTATCTTTGATCTGC
1 AATCTGCTATCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTATCATCTTCGATCTGC
* * *
69455358 TCTCTGCCAATACAGAGACGCCAAATCTGA-TATCTTTGATCTGCTCT-TCACCAATACAGAGAC
66 TCTCTGCCAACACAGAGACGCCAAATCT-ACTATCTTCGATCTGCCCTCTCA-CAATACAGAGAC
* * *
69455421 GCCAAATCTGCTATCTACGATCTGCTCTCTGCTAATACAGAGACGCCAAATCTGCTATCTTCGAT
129 GCCAAATCTGCTATCTACGATCTGCTCTCCGCCAATACAGAGACACCAAATCTGCTATCTTCGAT
**
69455486 CTGCTCTCTGCCAATACAGAGACGCCA
194 CTGCTCTCCACCAATACAGAGACGCCA
69455513 AATCTGCTATCTTCGATCTGCTC
1 AATCTGCTATCTTCGATCTGCTC
69455536 TCCAAATCTT
Statistics
Matches: 214, Mismatches: 26, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
218 2 0.01
219 175 0.82
220 37 0.17
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (220 bp):
AATCTGCTATCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTATCATCTTCGATCTGC
TCTCTGCCAACACAGAGACGCCAAATCTACTATCTTCGATCTGCCCTCTCACAATACAGAGACGC
CAAATCTGCTATCTACGATCTGCTCTCCGCCAATACAGAGACACCAAATCTGCTATCTTCGATCT
GCTCTCCACCAATACAGAGACGCCA
Found at i:69455651 original size:44 final size:44
Alignment explanation
Indices: 69455587--69455716 Score: 170
Period size: 44 Copynumber: 2.9 Consensus size: 44
69455577 GATCTGCTCC
* * * * *
69455587 CTGCTTATCTTCGATCTGCTCTCTGTCAACACAGAGATGCTAAAT
1 CTGC-TATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAAT
* *
69455632 CTGCTATCTTTGATCTGCTCTCCGCCAATATAGAGACGCCAAAT
1 CTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAAT
* *
69455676 CTGCTATCTTTGATATGCTCTCTGCCAATACAGTGACGCCA
1 CTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCA
69455717 TGTGACATCC
Statistics
Matches: 74, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
44 70 0.95
45 4 0.05
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.32
Consensus pattern (44 bp):
CTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAAT
Found at i:69456555 original size:142 final size:142
Alignment explanation
Indices: 69456348--69456640 Score: 561
Period size: 142 Copynumber: 2.1 Consensus size: 142
69456338 TGAGTTAAAT
69456348 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
*
69456413 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTATG-CATTGAGTTCTTGTTGTTATGTGTGT
69456478 GTGTGCATGAGTA
130 GTGTGCATGAGTA
69456491 TTCGGCCATGCATGTTG-TTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
69456555 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTATGCATTGAGTTCTTGTTGTTATGTGTGTG
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTATGCATTGAGTTCTTGTTGTTATGTGTGTG
69456620 TGTGCATGAGTA
131 TGTGCATGAGTA
69456632 TTCGGCCAT
1 TTCGGCCAT
69456641 ATGGGGTATA
Statistics
Matches: 149, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 48 0.32
142 84 0.56
143 17 0.11
ACGTcount: A:0.22, C:0.10, G:0.29, T:0.40
Consensus pattern (142 bp):
TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTATGCATTGAGTTCTTGTTGTTATGTGTGTG
TGTGCATGAGTA
Found at i:69457156 original size:29 final size:29
Alignment explanation
Indices: 69457123--69457253 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
69457113 GTGACGAGAT
69457123 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
69457152 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
69457181 AGGCACTAAGTGTGCATGCTGGAAA-ATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ** *
69457209 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
69457238 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
69457254 AGCTCGAAGG
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 24 0.27
29 66 0.73
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:69457252 original size:57 final size:58
Alignment explanation
Indices: 69457124--69457244 Score: 172
Period size: 57 Copynumber: 2.1 Consensus size: 58
69457114 TGACGAGATT
* * ** *
69457124 GGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAATATATGACACTAAGTGTGCAAGCTGGAAAAATAA
* *
69457182 GGCACTAAGTGTGCATGCTGGAAA-ATATGACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAATATATGACACTAAGTGTGCAAGCTGGAAAAATAA
69457239 GGCACT
1 GGCACT
69457245 GGGTGTGCGA
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
57 33 0.59
58 23 0.41
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (58 bp):
GGCACTAAGTGTGCATGCTGGAAATATATGACACTAAGTGTGCAAGCTGGAAAAATAA
Found at i:69468587 original size:143 final size:142
Alignment explanation
Indices: 69468379--69468672 Score: 570
Period size: 143 Copynumber: 2.1 Consensus size: 142
69468369 TGAGTTAAAT
*
69468379 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
69468444 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAAC-AAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
69468509 GTGTGCATGAGTA
130 GTGTGCATGAGTA
69468522 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
69468587 GAGTGAGTTCGAATGTTTAACAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTG
66 GAGTGAGTTCGAATGTTTAACAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTG
69468652 TGTGCATGAGTA
131 TGTGCATGAGTA
69468664 TTCGGCCAT
1 TTCGGCCAT
69468673 ATGGGGTATA
Statistics
Matches: 150, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
142 65 0.43
143 85 0.57
ACGTcount: A:0.21, C:0.10, G:0.29, T:0.39
Consensus pattern (142 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTG
TGTGCATGAGTA
Found at i:69469188 original size:29 final size:29
Alignment explanation
Indices: 69469155--69469286 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
69469145 GTGACGAGAT
*
69469155 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
69469184 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
69469213 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
** * **
69469242 TAACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
69469271 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
69469287 AGCTCGAAGG
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:69470806 original size:44 final size:44
Alignment explanation
Indices: 69470738--69471054 Score: 465
Period size: 44 Copynumber: 7.2 Consensus size: 44
69470728 GGGGTGTTAC
*
69470738 ACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAG
* *
69470782 ACGCCAAATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAG
* * * *
69470826 ACGCCAAATCTGTTATCTTTGATCTGCTCTCTGTCAACACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAG
* *
69470870 ATGCCAAATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAG
*
69470914 ACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAG
**
69470958 ACGCCAAATCTGCTATCTTCGATCTGCT-TCTAACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAG
* * * * *
69471001 ATGCCAAATCTGTTATCTTCGATTTGCTCTCTGTCAACACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAG
*
69471045 ATGCCAAATC
1 ACGCCAAATC
69471055 CGCAGGATTC
Statistics
Matches: 251, Mismatches: 21, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
43 37 0.15
44 214 0.85
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (44 bp):
ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAG
Found at i:69485966 original size:13 final size:13
Alignment explanation
Indices: 69485948--69485973 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69485938 TAATGTTTCA
69485948 TTTTTAATTAATT
1 TTTTTAATTAATT
69485961 TTTTTAATTAATT
1 TTTTTAATTAATT
69485974 AAGTCATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTTAATTAATT
Found at i:69494185 original size:42 final size:41
Alignment explanation
Indices: 69494123--69494275 Score: 162
Period size: 42 Copynumber: 3.7 Consensus size: 41
69494113 TAAGATGCCA
* * * *
69494123 ACGCCATGTCCCAGACATGGTCTTACATGTGATCTCACATCG
1 ACGCCATATCCCAGACATGGTCTTACACG-AATCTCATATCG
* * * * *
69494165 ATGCCATATCCCAGATATGGTCTTATACGAATTCTCGTTTCG
1 ACGCCATATCCCAGACATGGTCTTACACGAA-TCTCATATCG
* * *
69494207 ACGCCATGTCCCAGACGTGGTCTTACACGAAATCTCATATCA
1 ACGCCATATCCCAGACATGGTCTTACACG-AATCTCATATCG
*
69494249 ACGCCATATCCCAGATATGGTCTTACA
1 ACGCCATATCCCAGACATGGTCTTACA
69494276 TGATAACTCA
Statistics
Matches: 89, Mismatches: 20, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
41 1 0.01
42 86 0.97
43 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (41 bp):
ACGCCATATCCCAGACATGGTCTTACACGAATCTCATATCG
Found at i:69495046 original size:8 final size:9
Alignment explanation
Indices: 69495025--69495055 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
69495015 CAATGATCTT
69495025 AAAAACATC
1 AAAAACATC
69495034 AAAAACATC
1 AAAAACATC
69495043 AAAAACAT-
1 AAAAACATC
69495051 AAAAA
1 AAAAA
69495056 TTAACACCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.23
9 17 0.77
ACGTcount: A:0.74, C:0.16, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAACATC
Found at i:69496710 original size:20 final size:20
Alignment explanation
Indices: 69496685--69496724 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
69496675 ATTGTGATAA
69496685 AATCAATTTCCAAAAATGTC
1 AATCAATTTCCAAAAATGTC
*
69496705 AATCAATTTCCCAAAATGTC
1 AATCAATTTCCAAAAATGTC
69496725 TATCTTTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.23, G:0.05, T:0.30
Consensus pattern (20 bp):
AATCAATTTCCAAAAATGTC
Found at i:69507101 original size:46 final size:47
Alignment explanation
Indices: 69507039--69507137 Score: 119
Period size: 46 Copynumber: 2.1 Consensus size: 47
69507029 AGCTTGTCAA
* * *
69507039 CCCTTCATAGTTGAAATAACTGCATCGATATTACATTTCAGC-TTGC
1 CCCTACATAGTTGAAATAACTACATCGACATTACATTTCAGCTTTGC
* ** * *
69507085 CCCTACATATTTGAAATAGTTACATCGACATTACATTTTAGCTTTTC
1 CCCTACATAGTTGAAATAACTACATCGACATTACATTTCAGCTTTGC
69507132 CCCTAC
1 CCCTAC
69507138 GTAGATTATA
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
46 35 0.80
47 9 0.20
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.36
Consensus pattern (47 bp):
CCCTACATAGTTGAAATAACTACATCGACATTACATTTCAGCTTTGC
Found at i:69508306 original size:17 final size:17
Alignment explanation
Indices: 69508262--69508297 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
69508252 TAATTTTATC
69508262 TCAATCTTTTGTACTCT
1 TCAATCTTTTGTACTCT
69508279 TCAATCTTTTGTACTCT
1 TCAATCTTTTGTACTCT
69508296 TC
1 TC
69508298 GTTCTTTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.17, C:0.25, G:0.06, T:0.53
Consensus pattern (17 bp):
TCAATCTTTTGTACTCT
Found at i:69510870 original size:40 final size:40
Alignment explanation
Indices: 69510797--69511004 Score: 177
Period size: 40 Copynumber: 5.2 Consensus size: 40
69510787 CAATTGAATG
* * * * *
69510797 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * * * *
69510837 ATATCCGGGTTAAGACCCAAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* **
69510877 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
* * * **
69510917 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * * **
69510957 CTATCCGGGCTAAGACCTGAAGGC-ATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
69510997 ATATCCGG
1 ATATCCGG
69511005 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 27, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
39 5 0.04
40 131 0.95
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
Found at i:69510940 original size:80 final size:80
Alignment explanation
Indices: 69510798--69511004 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
69510788 AATTGAATGA
* * ** * * *
69510798 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCAAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCAAAGGCAA
*
69510863 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * * *
69510876 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCAAAGGC
* *
69510941 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* * *
69510958 TATCCGGGCTAAGACCTGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
69511005 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
78 1 0.01
80 103 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCAAAGGCAA
TTGTGCAAGTCGTAC
Found at i:69520221 original size:15 final size:15
Alignment explanation
Indices: 69520176--69520224 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
69520166 CCTACAGGGG
69520176 ACACATGGCTGTGTC
1 ACACATGGCTGTGTC
69520191 AC-C-TGGCTGTGTGTC
1 ACACATGGC--TGTGTC
*
69520206 ACACATGGCTGAGTC
1 ACACATGGCTGTGTC
69520221 ACAC
1 ACAC
69520225 GCCTGTGTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
13 4 0.14
14 1 0.03
15 19 0.66
16 1 0.03
17 4 0.14
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (15 bp):
ACACATGGCTGTGTC
Found at i:69520231 original size:30 final size:30
Alignment explanation
Indices: 69520176--69520232 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
69520166 CCTACAGGGG
* *
69520176 ACACATGGCTGTGTCACCTGGCTGTGTGTC
1 ACACATGGCTGAGTCACCTGCCTGTGTGTC
69520206 ACACATGGCTGAGTCACAC-GCCTGTGT
1 ACACATGGCTGAGTCAC-CTGCCTGTGT
69520233 CTCAAACTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.26
Consensus pattern (30 bp):
ACACATGGCTGAGTCACCTGCCTGTGTGTC
Found at i:69521028 original size:41 final size:41
Alignment explanation
Indices: 69520983--69521149 Score: 190
Period size: 41 Copynumber: 4.1 Consensus size: 41
69520973 CAAGGGTACA
* * * * *
69520983 TATGTGCAATTCAGGGGTATTAAAGTACAAATAGTGGAATG
1 TATGTGTAATTCAGGGGTACTGAAGTACAAATAGGGGCATG
* * * * *
69521024 TATGTGAAATTTAAGGGTACTGAAGTACAAACAGGGGCACG
1 TATGTGTAATTCAGGGGTACTGAAGTACAAATAGGGGCATG
* * * * *
69521065 TATGTGTATTTAAGGGGCACTGGAGTATAAATAGGGGCATG
1 TATGTGTAATTCAGGGGTACTGAAGTACAAATAGGGGCATG
*
69521106 TATGTGTAATTCAGGGGTACTGAAGTACAAACAGGGGCATG
1 TATGTGTAATTCAGGGGTACTGAAGTACAAATAGGGGCATG
69521147 TAT
1 TAT
69521150 ACGCATTTCA
Statistics
Matches: 102, Mismatches: 24, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 102 1.00
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.27
Consensus pattern (41 bp):
TATGTGTAATTCAGGGGTACTGAAGTACAAATAGGGGCATG
Found at i:69536982 original size:40 final size:40
Alignment explanation
Indices: 69536938--69537123 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
69536928 GCTACTCGTT
* *
69536938 CAAATGCCTTCGGGACATGGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
69536978 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
69537018 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
69537058 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
69537099 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69537124 CATCATTCGA
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 113 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:69545995 original size:54 final size:55
Alignment explanation
Indices: 69545858--69546001 Score: 154
Period size: 54 Copynumber: 2.6 Consensus size: 55
69545848 CATGCCTTAT
* *
69545858 GAACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTA
1 GAACTTACCAATGCCATGCCTTGGCATGGTCTTACAT-GGATCTTT-CCTTATAGTA
* * * * *
69545915 G--TTTATCAATGCCATGTCTTGACATGGTCTTACAT-GAT-TTT-CTTATCTTGTA
1 GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGATCTTTCCTTA--TAGTA
69545967 GAACTTACCAATGCCATGCCTTGGCATGGTCTTAC
1 GAACTTACCAATGCCATGCCTTGGCATGGTCTTAC
69546002 TTGGTATCCT
Statistics
Matches: 72, Mismatches: 11, Indels: 11
0.77 0.12 0.12
Matches are distributed among these distances:
50 4 0.06
52 8 0.11
53 3 0.04
54 28 0.39
55 28 0.39
57 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.37
Consensus pattern (55 bp):
GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGATCTTTCCTTATAGTA
Found at i:69553535 original size:61 final size:61
Alignment explanation
Indices: 69553448--69553562 Score: 203
Period size: 61 Copynumber: 1.9 Consensus size: 61
69553438 ATAAGGTCAT
* * *
69553448 ATTGATTCGAGATCGATTAAAAGATGTATCAGATAGACAGAAGTCTTACGCAGAAGGTTAG
1 ATTGATTCGAGATCGATCAAAAGATGTATCAGACAGACAGAAGTCTTACACAGAAGGTTAG
69553509 ATTGATTCGAGATCGATCAAAAGATGTATCAGACAGACAGAAGTCTTACACAGA
1 ATTGATTCGAGATCGATCAAAAGATGTATCAGACAGACAGAAGTCTTACACAGA
69553563 TTTGAAGCGT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24
Consensus pattern (61 bp):
ATTGATTCGAGATCGATCAAAAGATGTATCAGACAGACAGAAGTCTTACACAGAAGGTTAG
Found at i:69560821 original size:40 final size:40
Alignment explanation
Indices: 69560776--69560983 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
69560766 CGGAATACAA
*
69560776 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
69560816 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
69560856 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
69560896 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
** * * ** * *
69560936 CCGGATATAATTAGTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
69560976 CCGGATAT
1 CCGGATAT
69560984 CATTCAATTG
Statistics
Matches: 142, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.01
40 138 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:69565832 original size:40 final size:40
Alignment explanation
Indices: 69565783--69565950 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
69565773 TCTTCGGAAT
* * *
69565783 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
69565822 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
69565862 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
69565902 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
69565942 TTAGCCCGG
1 TTAGCCCGG
69565951 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:69572908 original size:78 final size:80
Alignment explanation
Indices: 69572773--69572968 Score: 294
Period size: 78 Copynumber: 2.5 Consensus size: 80
69572763 TCGAATGATG
* *
69572773 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCAAT
1 TCCGGGATAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCAAT
69572837 T-TGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
*
69572852 T-C-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCAA
69572914 TTGTGCGAGTTACTAAA
64 TTGTGCGAGTTACTAAA
*
69572931 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTA
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTA
69572969 TAACCGGGCT
Statistics
Matches: 106, Mismatches: 4, Indels: 13
0.86 0.03 0.11
Matches are distributed among these distances:
77 2 0.02
78 47 0.44
79 25 0.24
80 29 0.27
81 3 0.03
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGTTACTAAA
Found at i:69572990 original size:40 final size:40
Alignment explanation
Indices: 69572773--69572968 Score: 278
Period size: 40 Copynumber: 5.0 Consensus size: 40
69572763 TCGAATGATG
* *
69572773 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
69572813 TCCGGACTAAGATCCGAAGGCAATT-TGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
69572852 T-CGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
69572891 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
69572931 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
69572969 TAACCGGGCT
Statistics
Matches: 145, Mismatches: 5, Indels: 12
0.90 0.03 0.07
Matches are distributed among these distances:
38 22 0.15
39 27 0.19
40 90 0.62
41 6 0.04
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69572996 original size:40 final size:40
Alignment explanation
Indices: 69572773--69572996 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
69572763 TCGAATGATG
*
69572773 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
69572813 TCCGGACTAAGAT-CCGAAGGCAATT-TGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
69572852 T-CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
69572891 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
69572931 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
69572972 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69572997 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 10, Indels: 12
0.88 0.05 0.06
Matches are distributed among these distances:
38 22 0.13
39 27 0.16
40 114 0.68
41 5 0.03
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69573010 original size:40 final size:40
Alignment explanation
Indices: 69572864--69573015 Score: 116
Period size: 40 Copynumber: 3.8 Consensus size: 40
69572854 GGACTAAGAT
** *
69572864 CCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGACTAAGAT-
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGA-TAAG-TC
** *
69572904 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGATAAGTC
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGATAAGTC
** * *
69572944 CCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
* *
69572984 CCGAAGGTATTTGAACGAG-TAGCTATATCCGG
1 CCGAAGGCATTTGAACGAGCTA-CTATAACCGG
69573016 TTAAACTCCG
Statistics
Matches: 101, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
39 3 0.03
40 93 0.92
41 5 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
Found at i:69575768 original size:51 final size:49
Alignment explanation
Indices: 69575700--69575835 Score: 191
Period size: 49 Copynumber: 2.7 Consensus size: 49
69575690 TGTGAGGTCG
69575700 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAA-T-TGATCA
* * * * * *
69575751 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAATTGATCA
*
69575800 CATGTGTAGTACTATGTGCAGGCTACTATGCGTACC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
69575836 AGATAGCTTT
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
49 37 0.49
50 1 0.01
51 37 0.49
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAATTGATCA
Found at i:69575825 original size:49 final size:51
Alignment explanation
Indices: 69575695--69575835 Score: 187
Period size: 51 Copynumber: 2.8 Consensus size: 51
69575685 TCTATTGTGA
* *
69575695 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGT
* * * * *
69575746 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-T
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGT
* *
69575795 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
69575836 AGATAGCTTT
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 37 0.47
50 1 0.01
51 40 0.51
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGT
Found at i:69584763 original size:48 final size:48
Alignment explanation
Indices: 69584707--69584803 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
69584697 AAAAAGGAAA
69584707 TGATATCACCCTATTTCCCATTTCTTCTTAGCTAAAAATATCATCCAT
1 TGATATCACCCTATTTCCCATTTCTTCTTAGCTAAAAATATCATCCAT
*
69584755 TGATATCACCCTATTTTCCATTTCTTCTTAGCTAAAAATATCATCCAT
1 TGATATCACCCTATTTCCCATTTCTTCTTAGCTAAAAATATCATCCAT
69584803 T
1 T
69584804 TTTGGGGTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.29, C:0.26, G:0.04, T:0.41
Consensus pattern (48 bp):
TGATATCACCCTATTTCCCATTTCTTCTTAGCTAAAAATATCATCCAT
Found at i:69589638 original size:57 final size:58
Alignment explanation
Indices: 69589568--69589678 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 58
69589558 AATTTCACAT
* *
69589568 ACCTATATCTGGCCCATTAATCCC-AATCATATTCATATGGCCCATTAGGCCCAAGTC
1 ACCTATATATGGCCCATTAATCCCAAATCACATTCATATGGCCCATTAGGCCCAAGTC
* * **
69589625 ACCTGTATATGGCCCATTAATCCCAAATCACATTTATATGGCCTGTTAGGCCCA
1 ACCTATATATGGCCCATTAATCCCAAATCACATTCATATGGCCCATTAGGCCCA
69589679 GTCGCATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 22 0.47
58 25 0.53
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.29
Consensus pattern (58 bp):
ACCTATATATGGCCCATTAATCCCAAATCACATTCATATGGCCCATTAGGCCCAAGTC
Found at i:69589642 original size:29 final size:29
Alignment explanation
Indices: 69589577--69589678 Score: 91
Period size: 29 Copynumber: 3.6 Consensus size: 29
69589567 TACCTATATC
** *
69589577 TGGCCCATTAATCCC-AATCATAT-TCATA
1 TGGCCCATTAGGCCCAAATCACATGT-ATA
* *
69589605 TGGCCCATTAGGCCCAAGTCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACATGTATA
** *
69589634 TGGCCCATTAATCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATGTATA
**
69589663 TGGCCTGTTAGGCCCA
1 TGGCCCATTAGGCCCA
69589679 GTCGCATTCA
Statistics
Matches: 58, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
28 13 0.22
29 44 0.76
30 1 0.02
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATGTATA
Found at i:69589772 original size:17 final size:18
Alignment explanation
Indices: 69589750--69589783 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
69589740 TGCCTATTAT
69589750 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
69589767 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
69589784 TTCGGCCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:69589929 original size:8 final size:8
Alignment explanation
Indices: 69589902--69589945 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
69589892 GTAGCCAAAC
69589902 TTTCGGCT
1 TTTCGGCT
* *
69589910 TTTCAGCA
1 TTTCGGCT
69589918 TTTCGGCT
1 TTTCGGCT
69589926 TTTCGGCT
1 TTTCGGCT
*
69589934 TCTCGGCAT
1 TTTCGGC-T
69589943 TTT
1 TTT
69589946 GGTTTTTGCC
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
8 26 0.90
9 3 0.10
ACGTcount: A:0.07, C:0.25, G:0.20, T:0.48
Consensus pattern (8 bp):
TTTCGGCT
Found at i:69591262 original size:16 final size:17
Alignment explanation
Indices: 69591230--69591265 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
69591220 ATAAAGAAAG
*
69591230 TTTAGGATTTTGAGATT
1 TTTAGGATTTCGAGATT
69591247 TTTAGG-TTTCGAGATT
1 TTTAGGATTTCGAGATT
69591263 TTT
1 TTT
69591266 GGGGCATTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.19, C:0.03, G:0.22, T:0.56
Consensus pattern (17 bp):
TTTAGGATTTCGAGATT
Found at i:69594204 original size:28 final size:29
Alignment explanation
Indices: 69594172--69594286 Score: 121
Period size: 29 Copynumber: 4.0 Consensus size: 29
69594162 TACCTGTATC
*
69594172 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCATATTCATA
69594200 TGGCCCATTAGGCCCAAATCACCTATT--TA
1 TGGCCCATTAGGCCCAAATCA--TATTCATA
* *
69594229 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCATATTCATA
** * *
69594258 TGGCCTGTTAGG-CCTAGTCATATTCATA
1 TGGCCCATTAGGCCCAAATCATATTCATA
69594286 T
1 T
69594287 TCATGCCCAC
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
27 3 0.04
28 27 0.36
29 40 0.54
31 4 0.05
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCATATTCATA
Found at i:69594375 original size:9 final size:9
Alignment explanation
Indices: 69594363--69594408 Score: 56
Period size: 9 Copynumber: 4.9 Consensus size: 9
69594353 CAGCCCATCG
69594363 AGCCCATTT
1 AGCCCATTT
*
69594372 AGCCCATTC
1 AGCCCATTT
69594381 AGGCCCATTT
1 A-GCCCATTT
69594391 AGCCCATTCT
1 AGCCCATT-T
*
69594401 GGCCCATT
1 AGCCCATT
69594409 CAGGCCAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 16 0.50
10 16 0.50
ACGTcount: A:0.20, C:0.37, G:0.15, T:0.28
Consensus pattern (9 bp):
AGCCCATTT
Found at i:69594388 original size:10 final size:10
Alignment explanation
Indices: 69594364--69594414 Score: 61
Period size: 10 Copynumber: 5.3 Consensus size: 10
69594354 AGCCCATCGA
*
69594364 GCCCATTTA-
1 GCCCATTCAG
69594373 GCCCATTCAG
1 GCCCATTCAG
*
69594383 GCCCATTTA-
1 GCCCATTCAG
*
69594392 GCCCATTCTG
1 GCCCATTCAG
69594402 GCCCATTCAG
1 GCCCATTCAG
69594412 GCC
1 GCC
69594415 AAATCACAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 15 0.43
10 20 0.57
ACGTcount: A:0.18, C:0.39, G:0.18, T:0.25
Consensus pattern (10 bp):
GCCCATTCAG
Found at i:69594388 original size:19 final size:19
Alignment explanation
Indices: 69594364--69594408 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
69594354 AGCCCATCGA
69594364 GCCCATTTAGCCCATTCAG
1 GCCCATTTAGCCCATTCAG
*
69594383 GCCCATTTAGCCCATTCTG
1 GCCCATTTAGCCCATTCAG
69594402 GCCCATT
1 GCCCATT
69594409 CAGGCCAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.18, C:0.38, G:0.16, T:0.29
Consensus pattern (19 bp):
GCCCATTTAGCCCATTCAG
Found at i:69594566 original size:24 final size:24
Alignment explanation
Indices: 69594517--69594568 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
69594507 GTAGCCAAAC
* *
69594517 TTTCAGCTTTTCGGTATTTTAGCT
1 TTTCAGCTTTTCGGCATTTGAGCT
69594541 TTTCAGCTTTTCGGCATTTCGA-CT
1 TTTCAGCTTTTCGGCATTT-GAGCT
69594565 TTTC
1 TTTC
69594569 CCGATACATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.12, C:0.21, G:0.15, T:0.52
Consensus pattern (24 bp):
TTTCAGCTTTTCGGCATTTGAGCT
Found at i:69596288 original size:40 final size:39
Alignment explanation
Indices: 69596230--69596383 Score: 191
Period size: 39 Copynumber: 3.9 Consensus size: 39
69596220 CGTTCAAACA
* * ** * *
69596230 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
69596270 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
69596310 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
69596349 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
69596384 TTCATTCACA
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 60 0.60
40 40 0.40
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:69596341 original size:39 final size:39
Alignment explanation
Indices: 69596260--69596383 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
69596250 TATGGTAACC
* *
69596260 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
69596300 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
69596339 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
69596378 CGCACA
1 CGCACA
69596384 TTCATTCACA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 60 0.78
40 17 0.22
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:69604211 original size:40 final size:39
Alignment explanation
Indices: 69604153--69604306 Score: 191
Period size: 39 Copynumber: 3.9 Consensus size: 39
69604143 CGTTCAAACA
* * ** * *
69604153 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
69604193 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
69604233 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
69604272 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
69604307 TTCATTCACA
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 60 0.60
40 40 0.40
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:69604264 original size:39 final size:39
Alignment explanation
Indices: 69604183--69604306 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
69604173 TATGGTAACC
* *
69604183 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
69604223 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
69604262 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
69604301 CGCACA
1 CGCACA
69604307 TTCATTCACA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 60 0.78
40 17 0.22
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:69607041 original size:16 final size:16
Alignment explanation
Indices: 69607017--69607048 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
69607007 AAGTTCGAGA
69607017 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
*
69607033 TTTCGGGATTTTTGGG
1 TTTCAGGATTTTTGGG
69607049 GCGTTACAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:69607363 original size:22 final size:22
Alignment explanation
Indices: 69607335--69607378 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
69607325 TACCTTCATA
69607335 CTTTAAACCTTCAAACCAAACT
1 CTTTAAACCTTCAAACCAAACT
* * *
69607357 CTTTAAATCTTGATACCAAACT
1 CTTTAAACCTTCAAACCAAACT
69607379 TAAATTTTGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.39, C:0.27, G:0.02, T:0.32
Consensus pattern (22 bp):
CTTTAAACCTTCAAACCAAACT
Found at i:69608152 original size:12 final size:12
Alignment explanation
Indices: 69608131--69608168 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
69608121 ACATTATTTG
*
69608131 AAAAAGATAAAT
1 AAAAAAATAAAT
69608143 AAAAAAATAAAT
1 AAAAAAATAAAT
*
69608155 TAAAAAATAAAT
1 AAAAAAATAAAT
69608167 AA
1 AA
69608169 GAACATAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (12 bp):
AAAAAAATAAAT
Found at i:69611662 original size:41 final size:41
Alignment explanation
Indices: 69611605--69611688 Score: 150
Period size: 41 Copynumber: 2.0 Consensus size: 41
69611595 CTATACATGC
69611605 CATAGGTTTGAAAGTTTGCTTATTAAAATACCGAAGACAGT
1 CATAGGTTTGAAAGTTTGCTTATTAAAATACCGAAGACAGT
* *
69611646 CATAGGTTTGAAAGTTTTCTTATTATAATACCGAAGACAGT
1 CATAGGTTTGAAAGTTTGCTTATTAAAATACCGAAGACAGT
69611687 CA
1 CA
69611689 ATAGTGTGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (41 bp):
CATAGGTTTGAAAGTTTGCTTATTAAAATACCGAAGACAGT
Found at i:69612131 original size:50 final size:50
Alignment explanation
Indices: 69612081--69612338 Score: 417
Period size: 50 Copynumber: 5.2 Consensus size: 50
69612071 CATTTAGCCG
* * *
69612081 AATACACAAGATCAAATATAACATCACATATGTACATACCTATATGGCCG
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCA
* *
69612131 AATATACAAGATCAAACATAACATCATATATGTACATACCTATGTGGCCA
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCA
* *
69612181 AATATACACGATCAAATATAACATCACATATGTACAAACCTATGTGGCCA
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCA
69612231 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCA
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCA
* * * *
69612281 AATATACAAGATCAAAAATAACATCACATATGTACAAACCTATGTTGCCG
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCA
69612331 AATATACA
1 AATATACA
69612339 TGGTCATTTA
Statistics
Matches: 193, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 193 1.00
ACGTcount: A:0.45, C:0.21, G:0.10, T:0.25
Consensus pattern (50 bp):
AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCA
Found at i:69613192 original size:15 final size:15
Alignment explanation
Indices: 69613169--69613198 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
69613159 TCAAAAACTC
69613169 TAATACAAAACATAT
1 TAATACAAAACATAT
*
69613184 TAATTCAAAACATAT
1 TAATACAAAACATAT
69613199 CTTTTATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:69620007 original size:50 final size:50
Alignment explanation
Indices: 69619924--69620185 Score: 407
Period size: 50 Copynumber: 5.2 Consensus size: 50
69619914 CACTCATTTA
* * *
69619924 GCCGAATACACAAGATCAAATATAACATTACATATGTACATACCTATATG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
* *
69619974 GCCAAATATACAAGATCAAACATAACATCACATATGTACATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
* * * *
69620024 GCCGAATATACAAGATCAAATATAGCATCACATGTGTACATACCTTTGGG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
* *
69620074 GCCTAATATACAAGATCAAATATAACATCACATATGTACTTACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
*
69620124 GCCGAATATACAAGATCAAATATAACATCACATCTGTACATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
*
69620174 TCCGAATATACA
1 GCCGAATATACA
69620186 TGGTCATTTA
Statistics
Matches: 191, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 191 1.00
ACGTcount: A:0.41, C:0.21, G:0.12, T:0.26
Consensus pattern (50 bp):
GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
Found at i:69623063 original size:42 final size:41
Alignment explanation
Indices: 69622955--69623069 Score: 133
Period size: 44 Copynumber: 2.7 Consensus size: 41
69622945 TTTTGATATG
* *
69622955 TGATTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGATT
1 TGATTTCGTGTAAGACC-CTGTCTGGGACATCGACATCGATT
* * *
69622996 TGATATTTACGTGTAAGACCATGTCTTGGACATCGACGTCGTATT
1 TG--ATTT-CGTGTAAGACCCTGTCTGGGACATCGACATCG-ATT
69623041 TGATTTCGTGTAAGACCCTGTCTGGGACA
1 TGATTTCGTGTAAGACCCTGTCTGGGACA
69623070 ATGGCATCAA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
41 2 0.03
42 21 0.34
43 8 0.13
44 26 0.42
45 5 0.08
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCCTGTCTGGGACATCGACATCGATT
Found at i:69630778 original size:42 final size:42
Alignment explanation
Indices: 69630670--69630834 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 42
69630660 TTTCGATATG
*
69630670 TGATTTCGTGTAAGACCAC-GTCTGGGACGTTGGCATCG-ATT
1 TGATTTCGTGTAAGACC-CTGTCTGGGACATTGGCATCGTATT
** *
69630711 TGAGATTTACGTGTAAGACTATGTCTTGGACATTGGCATCGTATT
1 T--GATTT-CGTGTAAGACCCTGTCTGGGACATTGGCATCGTATT
* *
69630756 TGATTTCGTGTAAGGCCCTGTCTGGGACAGTGGCATCGATATT
1 TGATTTCGTGTAAGACCCTGTCTGGGACATTGGCATCG-TATT
* * *
69630799 TGATTAT-ATGTAAGACCAC-ATCTGGGACGTTGGCAT
1 TGATT-TCGTGTAAGACC-CTGTCTGGGACATTGGCAT
69630835 TGTACGAGCT
Statistics
Matches: 102, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.26
43 41 0.40
44 29 0.28
45 4 0.04
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.33
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCCTGTCTGGGACATTGGCATCGTATT
Found at i:69637025 original size:21 final size:21
Alignment explanation
Indices: 69636999--69637051 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
69636989 GACAAGGTAT
69636999 AGAAGAAGCTACCTGGGAACC
1 AGAAGAAGCTACCTGGGAACC
69637020 AGAAGAAGCTACCTGGGAACC
1 AGAAGAAGCTACCTGGGAACC
69637041 AGAAGAAGCTA
1 AGAAGAAGCTA
69637052 TGAAAGTGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.42, C:0.21, G:0.28, T:0.09
Consensus pattern (21 bp):
AGAAGAAGCTACCTGGGAACC
Found at i:69645661 original size:28 final size:28
Alignment explanation
Indices: 69645629--69645745 Score: 180
Period size: 28 Copynumber: 4.2 Consensus size: 28
69645619 TGGGAAGTAG
*
69645629 TTGGGCCTAATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
69645657 TTGGGCTTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
69645685 TTGGGCTTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * *
69645713 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
69645741 TTGGG
1 TTGGG
69645746 TCTAAAGGGA
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 83 1.00
ACGTcount: A:0.21, C:0.13, G:0.37, T:0.29
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:69645698 original size:56 final size:56
Alignment explanation
Indices: 69645629--69645765 Score: 184
Period size: 56 Copynumber: 2.4 Consensus size: 56
69645619 TGGGAAGTAG
* * *
69645629 TTGGGCCTAATGGGCCATATGAATGTGATTGGGCTTGATGGGCCATATGAATGTGA
1 TTGGGCCTAATGGGCCATATGAATGTGATTGGGCCTGATGGGCCATATGAACGAGA
* * *
69645685 TTGGGCTTGATGGGCCATATGAATGTGATTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTAATGGGCCATATGAATGTGATTGGGCCTGATGGGCCATATGAACGAGA
* * *
69645741 TTGGGTCTAAAGGGACCAAATGAAT
1 TTGGGCCTAATGGG-CCATATGAAT
69645766 AAGTGTGGAT
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
56 60 0.87
57 9 0.13
ACGTcount: A:0.25, C:0.13, G:0.34, T:0.28
Consensus pattern (56 bp):
TTGGGCCTAATGGGCCATATGAATGTGATTGGGCCTGATGGGCCATATGAACGAGA
Found at i:69646356 original size:27 final size:27
Alignment explanation
Indices: 69646065--69646379 Score: 330
Period size: 27 Copynumber: 11.7 Consensus size: 27
69646055 TAATAAAGAG
* *
69646065 AAATTACTGAAATACCATCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
69646092 AAATTACCTAAATACCCCCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
69646119 AAATTACTGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
**
69646145 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
69646172 AAATTACCGAAATACTCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* ** * * ** *
69646199 AAATCATTGAAACACCATTAATTTATA
1 AAATTACCGAAATACCCTCGATTTGTA
*
69646226 AAATTACCAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
69646253 AAATTACCAAAATACCCTCGATTTTTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
69646280 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
69646307 AAATTATCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* *
69646334 AAATTATCGAAATACCCTCG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* *
69646361 AAATGACCGACATATCCCT
1 AAATTACCGAAATA-CCCT
69646380 ATAGGGTAAA
Statistics
Matches: 242, Mismatches: 43, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
26 25 0.10
27 213 0.88
28 4 0.02
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:69659584 original size:15 final size:15
Alignment explanation
Indices: 69659561--69659626 Score: 78
Period size: 15 Copynumber: 4.4 Consensus size: 15
69659551 GCATAGTATC
* *
69659561 TTATCTTGGGTTTCT
1 TTATTTTGGATTTCT
69659576 TTATTTTGGATTTCT
1 TTATTTTGGATTTCT
* *
69659591 TTATTCTGGGTTTCT
1 TTATTTTGGATTTCT
* *
69659606 CTATCTTGGATTTCT
1 TTATTTTGGATTTCT
69659621 TTATTT
1 TTATTT
69659627 AGTTTTCTTG
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 41 1.00
ACGTcount: A:0.11, C:0.12, G:0.15, T:0.62
Consensus pattern (15 bp):
TTATTTTGGATTTCT
Found at i:69659601 original size:30 final size:30
Alignment explanation
Indices: 69659567--69659625 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
69659557 TATCTTATCT
* *
69659567 TGGGTTTCTTTATTTTGGATTTCTTTATTC
1 TGGGTTTCTCTATCTTGGATTTCTTTATTC
69659597 TGGGTTTCTCTATCTTGGATTTCTTTATT
1 TGGGTTTCTCTATCTTGGATTTCTTTATT
69659626 TAGTTTTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.10, C:0.12, G:0.17, T:0.61
Consensus pattern (30 bp):
TGGGTTTCTCTATCTTGGATTTCTTTATTC
Found at i:69671964 original size:20 final size:20
Alignment explanation
Indices: 69671926--69671984 Score: 93
Period size: 19 Copynumber: 2.9 Consensus size: 20
69671916 TTATTTTTTT
69671926 ATTTTAAAATATA-TTTAGA
1 ATTTTAAAATATATTTTAGA
69671945 ATTTTAAAATATATTTTAGA
1 ATTTTAAAATATATTTTAGA
69671965 ATTTCTAAAAATATATTTTA
1 ATTT-T-AAAATATATTTTA
69671985 AAATAAAAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
19 13 0.35
20 10 0.27
21 1 0.03
22 13 0.35
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (20 bp):
ATTTTAAAATATATTTTAGA
Found at i:69672886 original size:205 final size:204
Alignment explanation
Indices: 69672532--69672914 Score: 601
Period size: 205 Copynumber: 1.9 Consensus size: 204
69672522 CTGCAGCCTC
* **
69672532 AGTTCCCCCACTCACCTATTCACTCATTCACAAAGAAAACACCCCGTCACACTCAGAGACAGCGT
1 AGTTCCCCCACTCACCCATTCACTCATTCACAAAGAAAACACCCCACCACACTCAGAGACAGCGT
69672597 CGCTACTCATTTGTCTCCAACATTCAACCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTA
66 CGCTACTCATTTGTCTCCAACATTCAACCTTCAG-CTCATCGCACATTGTAATAACAACTAGTTA
* * *
69672662 GTAGTTACTAAAAAAAACTACTTATTATGACAATGCATGCAATAATTTCCCACCTGACACACTTT
130 ATAGTTACTAAAAAAAACTACTTATTATGACAACGCATACAATAATTTCCCACCTGACACACTTT
69672727 CACCAACCTT
195 CACCAACCTT
* * *
69672737 AGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAAC-CCCCACCACGCTCAGAGACCTCCA
1 AGTTCCCCCACTCACCCATTCACTCATTCACAAAGAAAACACCCCACCACACTCAGAGA----CA
*
69672801 GCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAG-TCATCGCACATTGTAATAACAACTAG
62 GCGTCGCTACTCATTTGTCTCCAACATTCAACCTTCAGCTCATCGCACATTGTAATAACAACTAG
*
69672865 TTAATAGTTACT-AAAAAAACTACTTATTATGATAACGCATACAATAATTT
127 TTAATAGTTACTAAAAAAAACTACTTATTATGACAACGCATACAATAATTT
69672915 TATCACATAA
Statistics
Matches: 163, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
204 15 0.09
205 72 0.44
206 37 0.23
208 39 0.24
ACGTcount: A:0.33, C:0.31, G:0.09, T:0.27
Consensus pattern (204 bp):
AGTTCCCCCACTCACCCATTCACTCATTCACAAAGAAAACACCCCACCACACTCAGAGACAGCGT
CGCTACTCATTTGTCTCCAACATTCAACCTTCAGCTCATCGCACATTGTAATAACAACTAGTTAA
TAGTTACTAAAAAAAACTACTTATTATGACAACGCATACAATAATTTCCCACCTGACACACTTTC
ACCAACCTT
Found at i:69673869 original size:211 final size:208
Alignment explanation
Indices: 69673393--69674023 Score: 949
Period size: 210 Copynumber: 3.0 Consensus size: 208
69673383 GCAAATCCTG
* * * * *
69673393 CAACCTCAGTTCCCCCACTCACCCATTCACTCATTCACAAAGATAACAACCCCACCAAGCTTAGA
1 CAACCTCAGTT-CCCCACTAACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGA
* ** *
69673458 GACCTCCAGCGTCGCTGTTCATTTGTCTCCAACAATCAGCCTTCAATCTCATCGCACATTGTAAT
65 GACCTCTAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAATCTCATCGCACATTGTAAT
*
69673523 AACAACTAGTTAGTAGTTACTATAAAAACTACATATTATGATAATGCATACAATAATTTTACCAC
130 AACAACTAGTTAGTAGTTACTAAAAAAACTAC-TATTATGATAATGCATACAATAATTTTACCAC
*
69673588 CCGACACACTTTCAC
194 CTGACACACTTTCAC
* * * * * *
69673603 CAACATCAGTTTTCCCACTCAA-CAATTCACTCATTCATAAAGACAACACCCCCACCACGATCAA
1 CAACCTCAG-TTCCCCACT-AACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAG
69673667 AGACCTCTAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAATCTCATCGCACATTGTAA
64 AGACCTCTAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAATCTCATCGCACATTGTAA
*
69673732 TAACAACTAGTTAGCAGTTACTAAGAAAAACTACTCATTATGATAATGCATACAATAATTTTACC
129 TAACAACTAGTTAGTAGTTACTAA-AAAAACTACT-ATTATGATAATGCATACAATAATTTTACC
69673797 ACCTGACACACTTTCAC
192 ACCTGACACACTTTCAC
*
69673814 CAACCTCAGTTCCCCTACTAACCCATTCACTCAGTCACAAAGACAACACCCCCACCACGCTCAGA
1 CAACCTCAGTTCCCC-ACTAACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGA
* * * *
69673879 GACCTTTAACGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGTACATTGTAAT
65 GACCTCTAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAATCTCATCGCACATTGTAAT
* *
69673944 AACAACTAGTTAGTAGTTACTAAAATAACTACTTATTATGATAATTCATACAATAATTTTACCAC
130 AACAACTAGTTAGTAGTTACTAAAAAAACTAC-TATTATGATAATGCATACAATAATTTTACCAC
*
69674009 CTAACACACTTTCAC
194 CTGACACACTTTCAC
69674024 TGCCAACAAT
Statistics
Matches: 381, Mismatches: 33, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
210 191 0.50
211 190 0.50
ACGTcount: A:0.34, C:0.30, G:0.09, T:0.27
Consensus pattern (208 bp):
CAACCTCAGTTCCCCACTAACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAG
ACCTCTAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAATCTCATCGCACATTGTAATA
ACAACTAGTTAGTAGTTACTAAAAAAACTACTATTATGATAATGCATACAATAATTTTACCACCT
GACACACTTTCAC
Found at i:69674951 original size:211 final size:209
Alignment explanation
Indices: 69674481--69675108 Score: 931
Period size: 211 Copynumber: 3.0 Consensus size: 209
69674471 CAAATTCTGC
* * * * * *
69674481 AACCTCAGTTCCCCCACTCACCTATTCACTAATTCATAAAGAGAACACCCT-ACCACGCCTAGAG
1 AACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCTCACCACGCTTAGAG
* *
69674545 AACTCCAGCGTCGCTACTCATTTCTCTCCAACATTCAGCTTTCAGTCTCATCGCACATTGTAATA
66 -ACTCCAGCATCGCTACTCATTTCTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATA
69674610 ACAACTAGTTAGTAGTTACTAAAATAC-CTACTTATTATGATAAAT-CATACAATAATTTTACCA
130 ACAACTAGTTAGTAGTTACTAAAA-ACACTACTTATTATGAT-AATGCATACAATAATTTTACCA
*
69674673 CCTGACACACTTTCACC
193 CCTGACACACTTTCACA
* * *
69674690 AGCCTCAGTTCCCTTACTTACCCATTCACTCATTCACAAAGACAACACCCTCACCACGCTTAGAG
1 AACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCTCACCACGCTTAGAG
* *
69674755 ACTTCCAGCATCGCTACTCATTTCTCTCCAACATTTATCCTTCAGTCTCATCGCACATTGTAATA
66 AC-TCCAGCATCGCTACTCATTTCTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATA
*
69674820 ACAATTAGTTAGTAGTTACTAAAAACAACTACTTATTATGATAATGCATACAATAATTTTACCAC
130 ACAACTAGTTAGTAGTTACTAAAAAC-ACTACTTATTATGATAATGCATACAATAATTTTACCAC
*
69674885 CTGACACACTGTCACA
194 CTGACACACTTTCACA
* * *
69674901 AACCTAAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACTACACCCTCACCACGCTGAGAG
1 AACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCTCACCACGCTTAGAG
* ** * * * *
69674966 ACCTCCAGTATCATTACTCATTTGTCTACAATATTCAGCCTTCAGTCTCATCGTACATTGTAATA
66 A-CTCCAGCATCGCTACTCATTTCTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATA
*
69675031 ACAACTAGTTAGTAGTTACT-AAAAGACTACTTATTATGATAATGCATACAATAATTTTACCACC
130 ACAACTAGTTAGTAGTTACTAAAAACACTACTTATTATGATAATGCATACAATAATTTTACCACC
69675095 TGACACACTTTCAC
195 TGACACACTTTCAC
69675109 TGCTAATAAT
Statistics
Matches: 379, Mismatches: 34, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
209 99 0.26
210 100 0.26
211 179 0.47
212 1 0.00
ACGTcount: A:0.32, C:0.29, G:0.09, T:0.29
Consensus pattern (209 bp):
AACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCTCACCACGCTTAGAG
ACTCCAGCATCGCTACTCATTTCTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAA
CAACTAGTTAGTAGTTACTAAAAACACTACTTATTATGATAATGCATACAATAATTTTACCACCT
GACACACTTTCACA
Found at i:69675925 original size:210 final size:210
Alignment explanation
Indices: 69675563--69676204 Score: 885
Period size: 210 Copynumber: 3.0 Consensus size: 210
69675553 ACAAATTCTG
* * *
69675563 CAACCTCAGTTCCCCCATTCACCCATTCACT-ATTTCACAAAGACAACACCCCTACCATGCTCAA
1 CAACCTCAGTTCCCCCACTCACCCATTCACTCATTT-ACAAAGACAACACCCCCACCATGCTCAG
* * * *
69675627 AGACCTCCAGCGTCGCTG-CTCAATTGTCTCCAACATTTAGCCTTTAGTCTTATCGCACATTGTA
65 AGACCTCCAGCGTCGC-GACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTA
*
69675691 ATAACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATACATACAATAATTTTACC
129 ATAACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAATTTTACC
69675756 ACCTGACACACTTTCAC
194 ACCTGACACACTTTCAC
* *
69675773 CAACCTCAGTTCCCCCACTCAACCATTCACTCATTTACAAACACAACACCCCCACCATGCTCAGA
1 CAACCTCAGTTCCCCCACTCACCCATTCACTCATTTACAAAGACAACACCCCCACCATGCTCAGA
* * *
69675838 GACCTCTAGCGTCGCGACTCATTTGTCTCCAACATTCAGCCTTCACTCCCATCGCACATTGTAAT
66 GACCTCCAGCGTCGCGACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAAT
* * * *
69675903 AACAACTAGTTAGTAGTTACTAAACACAATTAGTTATTATCATAATGCATACAATAATTTTACCA
131 AACAACTAGTTAGTAGTTACTAAA-AAAACTACTTATTATGATAATGCATACAATAATTTTACCA
69675968 CCTGACACACTTTCGAAAAC
195 CCTGACACACTTTC----AC
* *
69675988 CTAAGTTCCCTACTAAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCA
1 C-AA----CCT-C--AGTTCCCCCACTCACCCATTCACTCATTTACAAAGACAACACCCCCACCA
* * * * ** * *
69676053 CGCTGAGAGACCTCCAGCATTGTTACTCATTTGTCTACAACATTCATCCTTCAGTCTCATCGCAC
58 TGCTCAGAGACCTCCAGCGTCGCGACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCAC
69676118 ATTGTAATAACAACTAGTTAGTAGTTACT-AAAAAACTACTTATTATGATAATGCATACAATAAT
123 ATTGTAATAACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAAT
69676182 TTTACCACCTGACACACTTTCAC
188 TTTACCACCTGACACACTTTCAC
69676205 TACAATAATC
Statistics
Matches: 381, Mismatches: 36, Indels: 23
0.87 0.08 0.05
Matches are distributed among these distances:
209 1 0.00
210 135 0.35
211 53 0.14
215 3 0.01
216 2 0.01
217 2 0.01
220 3 0.01
221 51 0.13
222 2 0.01
223 129 0.34
ACGTcount: A:0.33, C:0.31, G:0.09, T:0.28
Consensus pattern (210 bp):
CAACCTCAGTTCCCCCACTCACCCATTCACTCATTTACAAAGACAACACCCCCACCATGCTCAGA
GACCTCCAGCGTCGCGACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAAT
AACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCAC
CTGACACACTTTCAC
Found at i:69677032 original size:210 final size:209
Alignment explanation
Indices: 69676674--69677081 Score: 654
Period size: 210 Copynumber: 1.9 Consensus size: 209
69676664 AACTCAGTTC
* *
69676674 CCCCTCTCACCCATTCACTAATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAGCAT
1 CCCCTCTCAACCATTCACTAATTCACAAACACAACACCCCCACCACGCTCAGAGACCTCCAGCAT
* ** * *
69676739 CGCTACTCATTTGTCTCCAACATTCGGCCTTTAGTTTCATCGTACATTGTAATAACAGCTAGTTA
66 CGCTACTCATTTGTCTCCAACATTCAGCCTTTAGTCCCATCGCACATTGTAATAACAACTAGTTA
*
69676804 GTAGTTACTAAAAAAACTACTTACTATGATAATAAATACAATAATTTTACCACCTGACACACTTT
131 GTAGTTACAAAAAAAACTACTTACTATGATAATAAATACAATAATTTTACCACCTGACACACTTT
69676869 CACCAACCTTTGTT
196 CACCAACCTTTGTT
* * **
69676883 CCCCTACTCAACCATTCACTCATTCACAAACACAACACCCCCACCACGCTCAGAGACCTCTAGTG
1 CCCCT-CTCAACCATTCACTAATTCACAAACACAACACCCCCACCACGCTCAGAGACCTCCAGCA
*
69676948 TCGCTACTCATTTGTCTCCAACATTTAGCCTTTAGTCCCATCGCACATTGTAATAACAACTAGTT
65 TCGCTACTCATTTGTCTCCAACATTCAGCCTTTAGTCCCATCGCACATTGTAATAACAACTAGTT
* * **
69677013 AGTAGTTACAAAAAAAACTACTTATTTTGATAATGCATACAATAATTTTACCACCTGACACACTT
130 AGTAGTTACAAAAAAAACTACTTACTATGATAATAAATACAATAATTTTACCACCTGACACACTT
69677078 TCAC
195 TCAC
69677082 TGCCAATTCT
Statistics
Matches: 181, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
209 5 0.03
210 176 0.97
ACGTcount: A:0.32, C:0.30, G:0.09, T:0.28
Consensus pattern (209 bp):
CCCCTCTCAACCATTCACTAATTCACAAACACAACACCCCCACCACGCTCAGAGACCTCCAGCAT
CGCTACTCATTTGTCTCCAACATTCAGCCTTTAGTCCCATCGCACATTGTAATAACAACTAGTTA
GTAGTTACAAAAAAAACTACTTACTATGATAATAAATACAATAATTTTACCACCTGACACACTTT
CACCAACCTTTGTT
Found at i:69677695 original size:874 final size:875
Alignment explanation
Indices: 69675773--69677952 Score: 3025
Period size: 874 Copynumber: 2.5 Consensus size: 875
69675763 ACACTTTCAC
* * *
69675773 CAACCTCAGTTCCCCCACTCAACCATTCACTCATTTACAAACACAACACCCCCACCATGCTCAGA
1 CAACCTCAGTTCCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCATGCTCAGA
* * * **
69675838 GACCTCTAGCGTCGC-GACTCATTTGTCTCCAACATTC-AGCCTTCACTCCCATCGCACATTGTA
66 GACCTCCAGCATCGCTG-CTCATTTGTCTCCAACATTCGA-CCTTCAGTCTTATCGCACATTGTA
* * * *
69675901 ATAACAACTAGTTAGTAGTTACTAAACACAATTAGTTATTATCATAATGCATACAATAATTTTAC
129 ATAACAACTAGTTAGTAGTTACTAAA-A-AACTACTTATTATGATAATACATACAATAATTTTAC
*
69675966 CACCTGACACACTTTCGAAAACCTAAGTTCCCTACTAAGTTCCCCTACTCACCCATTCACTCATT
192 CACCTGACACACTTTC----ACC-AA----CCT--T-AGTTCCCCTACTCAACCATTCACTCATT
* * * * * *
69676031 CACAAAGACAACACCCCCACCACGCTGAGAGACCTCCAGCATTGTTACTCATTTGTCTACAACAT
245 CACAAAGACAACACCCCCACCACGCTCAGAGACCTCTAGCGTCGCTACTCATTTGTCTCCAACAT
* *
69676096 TCATCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAGTAGTTAC-TAAAAAACTACTTA
310 TCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAGTAGTTACAAAAAAAACTACTTA
69676160 TTATGATAATGCATACAATAATTTTACCACCTGACACACTTTCACTACAATAATCTTTACTGTGG
375 TTATGATAATGCATACAATAATTTTACCACCTGACACACTTTCACTACAAT-ATCTTTACTGTGG
* *
69676225 AATATAAAATGATCTCATTTTTCTTGGTTTTATAGAATTTTTTTTCATAGAGAGTTATTATATTT
439 AATATAAAATGATCTCATTTTTCTTGGTTTTATAGAATTTTTTTTCATAGAGAATTATTATATGT
* * * *
69676290 ATTGTACTACCAGTCTGATTTAAAAATGGGTCAGGCTTCGAGCAAGGAATTTTCAACCCAAGTCC
504 AATGTACTACCAGTCTCATTTAAAAATGGGTCAAGCTTCGAGCAAGGAATTTTCAACCCAAGCCC
* *
69676355 AGCAAGATTTTATTAACCTAAAAGTTTTATCCTTGCTCCCATTTCCCAGCAGACCCAATCTTGAT
569 AGCAAGATTTTATTAACCTAAAAGTTTTACCCTTGCTCCCACTTCCCAGCAGACCCAATCTTGAT
* * * *
69676420 ATCCCCCTTTCCGTTTCCAATCCCTATTTTCCCTTCCTTAATCCCTAATCCTTAAATTTTTCCTT
634 ATACCCCTTTCCCTTTCCAATCCCCATTTTCCCTTCCTCAATCCCTAATCCTTAAATTTTTCCTT
* * * *
69676485 ATTTATTGCTTCTTTGGTGTTGCCACCAATGATTCTTTTCTACCTTTAGCTGCCTTTCATTTGTT
699 ATTTACTGCTTCTTTGGTGCTGCCACCAATGATTCTTCTCTACCTTTAGCTGCCTTTCATTTCTT
* * *
69676550 TTGTTGTCATTACTGCCATTGTTGCTTTTTTACCTTCTGTTTAGTTTCTGCTTCTTCACCAGTCG
764 TCGTTGTCATTACTGCCATTGTTGCTTTTTTACCTTCTGTTCAGTTTCTGATTCTTCACCAGTCG
* ** * * *
69676615 TTAGTCGTCGTTGCTACTTATCGTTTCTCTACCTTCTGCAAATTCTG
829 TTAGTCGCCACTGCTACTTATCGCTTCTCTACCGTCTGCAAATTCTA
* * * *
69676662 CAAACTCAGTTCCCCCTCTCACCCATTCACTAATTCACAAAGACAACACCCCCACCACGCTCAGA
1 CAACCTCAGTTCCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCATGCTCAGA
* * * *
69676727 GACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCGGCCTTTAGT-TTCATCGTACATTGTAA
66 GACCTCCAGCATCGCTGCTCATTTGTCTCCAACATTCGACCTTCAGTCTT-ATCGCACATTGTAA
* * *
69676791 TAACAGCTAGTTAGTAGTTACTAAAAAAACTACTTACTATGATAATAAATACAATAATTTTACCA
130 TAACAACTAGTTAGTAGTTACT-AAAAAACTACTTATTATGATAATACATACAATAATTTTACCA
* *
69676856 CCTGACACACTTTCACCAACCTTTGTTCCCCTACTCAACCATTCACTCATTCACAAACACAACAC
194 CCTGACACACTTTCACCAACCTTAGTTCCCCTACTCAACCATTCACTCATTCACAAAGACAACAC
* * * *
69676921 CCCCACCACGCTCAGAGACCTCTAGTGTCGCTACTCATTTGTCTCCAACATTTAGCCTTTAGTCC
259 CCCCACCACGCTCAGAGACCTCTAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCT
*
69676986 CATCGCACATTGTAATAACAACTAGTTAGTAGTTACAAAAAAAACTACTTATTTTGATAATGCAT
324 CATCGCACATTGTAATAACAACTAGTTAGTAGTTACAAAAAAAACTACTTATTATGATAATGCAT
*
69677051 ACAATAATTTTACCACCTGACACACTTTCACTGCCAAT-TCTTTACTGTGGAATATAAAATGATC
389 ACAATAATTTTACCACCTGACACACTTTCACT-ACAATATCTTTACTGTGGAATATAAAATGATC
*
69677115 TCATTTTTCTTGGTTTTATAGAA-TTTTTTTCATAGAGAATTATTGTATGTAATGTACTACCAGT
453 TCATTTTTCTTGGTTTTATAGAATTTTTTTTCATAGAGAATTATTATATGTAATGTACTACCAGT
* ** * *
69677179 C-CATTTTAAAAATGGGTTAAGCTTCGAGTGAGGATTTTTCAACCCAAGCCCAGACCA-ATTTTA
518 CTCA-TTTAAAAATGGGTCAAGCTTCGAGCAAGGAATTTTCAACCCAAGCCCAG-CAAGATTTTA
* * * * *
69677242 TTAACCTAAAAGTTTTACCCTTGTTCCCACTTCCTAGTAGACCCAGTCTTGATATACCTCTTTCC
581 TTAACCTAAAAGTTTTACCCTTGCTCCCACTTCCCAGCAGACCCAATCTTGATATACCCCTTTCC
69677307 CTTTCCAATCCCCATTTTCCCTTCCTCAATCCCTAATCCTTAAATTTTTCCTTATTTACTGCTTC
646 CTTTCCAATCCCCATTTTCCCTTCCTCAATCCCTAATCCTTAAATTTTTCCTTATTTACTGCTTC
* * * * * *
69677372 TTTGGTGCTGTCACCATTG-TTGCTTCTCTGCC-TTCGCTGCTTTTCGTTTCTTTCGTTGTCATT
711 TTTGGTGCTGCCACCAATGATT-CTTCTCTACCTTTAGCTGCCTTTCATTTCTTTCGTTGTCATT
* *
69677435 ACTGTCATTGTTGCTTTTTTACCTTCTGTTCAGTTTCTGATTCTTCGCCAGTCGTTAGTCGCCAC
775 ACTGCCATTGTTGCTTTTTTACCTTCTGTTCAGTTTCTGATTCTTCACCAGTCGTTAGTCGCCAC
*
69677500 TGCTATTTATCGCTTCTCTACCGTCTGCAAATTCTA
840 TGCTACTTATCGCTTCTCTACCGTCTGCAAATTCTA
* * *
69677536 CAACCACAGTTCCCCCAGTCACCCATTCACTCATTCACAAAGACAACAACCCCACCATGCTCAGA
1 CAACCTCAGTTCCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCATGCTCAGA
* * * * *
69677601 GACCACCAGCATCGCTGTTCATTTGTCTCCAACAATCGAACTTCAGTCTTATCCCACATTGTAAT
66 GACCTCCAGCATCGCTGCTCATTTGTCTCCAACATTCGACCTTCAGTCTTATCGCACATTGTAAT
* * * * *
69677666 AACAACTAGCTAGTTGTTACTATAAAAACTACTTATTATGATAATTCATACAATACTTTTATCAC
131 AACAACTAGTTAGTAGTTACTA-AAAAACTACTTATTATGATAATACATACAATAATTTTACCAC
* ** * * *
69677731 TTGACATGCTTTCACCGACCATAGTTTCCCCT-CTCAACCATTAACTCATTCACAAAGACAACAC
195 CTGACACACTTTCACCAACCTTAG-TTCCCCTACTCAACCATTCACTCATTCACAAAGACAACAC
* * *
69677795 CCCTACCACGATCAGAGACCTCTAGCGTCGCTACTTATTTGTCTCCAACATTCAGCGC-TCAGTC
259 CCCCACCACGCTCAGAGACCTCTAGCGTCGCTACTCATTTGTCTCCAACATTCAGC-CTTCAGTC
* * * * *
69677859 TTATCGCACATTGTAATAATAGCTAGTTAGTAGTTACTAAGAAAAACTACTCATTATGATAATGC
323 TCATCGCACATTGTAATAACAACTAGTTAGTAGTTAC-AAAAAAAACTACTTATTATGATAATGC
69677924 ATACAATAATTTTACCACCTGACACACTT
387 ATACAATAATTTTACCACCTGACACACTT
69677953 ACACCAACCT
Statistics
Matches: 1147, Mismatches: 130, Indels: 42
0.87 0.10 0.03
Matches are distributed among these distances:
873 1 0.00
874 422 0.37
875 292 0.25
876 180 0.16
877 59 0.05
878 4 0.00
879 3 0.00
883 2 0.00
884 3 0.00
888 46 0.04
889 132 0.12
890 3 0.00
ACGTcount: A:0.28, C:0.27, G:0.11, T:0.34
Consensus pattern (875 bp):
CAACCTCAGTTCCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCATGCTCAGA
GACCTCCAGCATCGCTGCTCATTTGTCTCCAACATTCGACCTTCAGTCTTATCGCACATTGTAAT
AACAACTAGTTAGTAGTTACTAAAAAACTACTTATTATGATAATACATACAATAATTTTACCACC
TGACACACTTTCACCAACCTTAGTTCCCCTACTCAACCATTCACTCATTCACAAAGACAACACCC
CCACCACGCTCAGAGACCTCTAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCA
TCGCACATTGTAATAACAACTAGTTAGTAGTTACAAAAAAAACTACTTATTATGATAATGCATAC
AATAATTTTACCACCTGACACACTTTCACTACAATATCTTTACTGTGGAATATAAAATGATCTCA
TTTTTCTTGGTTTTATAGAATTTTTTTTCATAGAGAATTATTATATGTAATGTACTACCAGTCTC
ATTTAAAAATGGGTCAAGCTTCGAGCAAGGAATTTTCAACCCAAGCCCAGCAAGATTTTATTAAC
CTAAAAGTTTTACCCTTGCTCCCACTTCCCAGCAGACCCAATCTTGATATACCCCTTTCCCTTTC
CAATCCCCATTTTCCCTTCCTCAATCCCTAATCCTTAAATTTTTCCTTATTTACTGCTTCTTTGG
TGCTGCCACCAATGATTCTTCTCTACCTTTAGCTGCCTTTCATTTCTTTCGTTGTCATTACTGCC
ATTGTTGCTTTTTTACCTTCTGTTCAGTTTCTGATTCTTCACCAGTCGTTAGTCGCCACTGCTAC
TTATCGCTTCTCTACCGTCTGCAAATTCTA
Found at i:69678052 original size:203 final size:208
Alignment explanation
Indices: 69677562--69678163 Score: 707
Period size: 203 Copynumber: 2.9 Consensus size: 208
69677552 AGTCACCCAT
* * * **
69677562 TCACTCATTCACAAAGACAACAACCCCACCATGCTCAGAGACCACCAGCATCGCTGTTCATTTGT
1 TCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAGCATCGCTACTCATTTGT
* * * * * * *
69677627 CTCCAACAATCGAACTTCAGTCTTATCCCACATTGTAATAACAACTAGCTAGTTGTTACT-ATAA
66 CTCCAACATTC-AGCCTCAGTCTTATCGCACATTGTAATAACAACTAGTTAGTAGTTACTAAAAA
* * * * ** * *
69677691 AAACTACTTATTATGATAATTCATACAATACTTTTATCACTTGACATGCTTTCACCGACCATAGT
130 AAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTACACCAACCATAGT
69677756 TTCCCCTCTCAACCA
195 TT-CCCTCTCAACCA
* * * * * *
69677771 TTAACTCATTCACAAAGACAACACCCCTACCACGATCAGAGACCTCTAGCGTCGCTACTTATTTG
1 -TCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAGCATCGCTACTCATTTG
* * *
69677836 TCTCCAACATTCAGCGCTCAGTCTTATCGCACATTGTAATAATAGCTAGTTAGTAGTTACTAAGA
65 TCTCCAACATTCAGC-CTCAGTCTTATCGCACATTGTAATAACAACTAGTTAGTAGTTACTAAAA
*
69677901 AAAACTACTCATTATGATAATGCATACAATAATTTTACCACCTGACACACTTACACCAACC-TCA
129 AAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTACACCAACCAT-A
69677965 G-TT-CC-C-CAA-C-
193 GTTTCCCTCTCAACCA
* *
69677975 TCACCCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAGCATCGCTACTCATTTTT
1 TCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAGCATCGCTACTCATTTGT
* *
69678040 CTCCAGCATTCAGCCTTCAGTCTTATCGCACATTCTAATAACAACTAGTTAGTAGTTACTAAAAT
66 CTCCAACATTCAGCC-TCAGTCTTATCGCACATTGTAATAACAACTAGTTAGTAGTTAC-----T
*
69678105 AACTAAAATAACTACTTATTATGATAATGCATACAATAATTTTACCACCTAACACACTT
125 AA--AAAA-AACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTT
69678164 TCAATACCAA
Statistics
Matches: 336, Mismatches: 44, Indels: 23
0.83 0.11 0.06
Matches are distributed among these distances:
202 1 0.00
203 110 0.33
205 1 0.00
206 3 0.01
207 1 0.00
208 5 0.01
209 2 0.01
210 109 0.32
211 104 0.31
ACGTcount: A:0.33, C:0.29, G:0.09, T:0.28
Consensus pattern (208 bp):
TCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAGCATCGCTACTCATTTGT
CTCCAACATTCAGCCTCAGTCTTATCGCACATTGTAATAACAACTAGTTAGTAGTTACTAAAAAA
AACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTACACCAACCATAGTT
TCCCTCTCAACCA
Found at i:69679622 original size:875 final size:872
Alignment explanation
Indices: 69677768--69682513 Score: 5932
Period size: 877 Copynumber: 5.4 Consensus size: 872
69677758 CCCCTCTCAA
* * * * * * *
69677768 CCATTAACTCATTCACAAAGACAACACCCCTACCACGATCAGAGACCTCTAGCGTCGCTACTTAT
1 CCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAACGTCGCTGCTCAT
* * *
69677833 TTGTCTCCAACATTCAGCGC-TCAGTCTTATCGCACATTGTAATAATAGCTAGTTAGTAGTTACT
66 TTGTCTCCAACATTCAGC-CTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAGTAGTTACT
* *
69677897 AAGAAAAACTACTCATTATGATAATGCATACAATAATTTTACCACCTGACACACTTACACCAACC
130 AA-AAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTTCACCAACC
*
69677962 TCAGTTCCCCA---A--C--TCACCCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTC
194 TCAGTTCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTC
* * * * *
69678020 CAGCATCGCTACTCATTTTTCTCCAGCATTCAGCCTTCAGTCTTATCGCACATTCTAATAACAAC
259 CAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAAC
69678085 TAGTTAGTAGTTACTAAAATAACTAAAATAACTACTTATTATGATAATGCATACAATAATTTTAC
324 TAGTTAGTAG----T----T-ACTAAAA-AACTACTTATTATGATAATGCATACAATAATTTTAC
* * * *
69678150 CACCTAACACACTTTCAATACCAATAATCTTTACTGTGGAATATAAAATAATCTCATTTTTCTTG
379 CACCTGACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAAATGATCTCATTTTTCTTG
* * **
69678215 GTTTTATAGAATTTTTTTCATAGAGATTAATTGTATATATTGCACTACAAGTCTGTTTTAAAAAT
444 GTTTTATAGAATTTTTTTCATAGAGATTTATTGTATATATTGCACTACCAGTCCATTTTAAAAAT
* * * * * *
69678280 GGTTCGGCCTTCGATCAAGGATTTTTCAACCTCGA-CCCAGCTCAATTTTATTAACCTAGAAA-T
509 GGGTCGGGCTTCGAGCAAGGATTTTTCAACC-CAAGCCCAGCCCGATTTTATTAACCTA-AAAGT
* **
69678343 CTTACCCTTGTTCCCACTTCCCAATAGACCCAGTGC-TGATATTCCTCTTT-CCTTTCCAATCCC
572 TTTACCCTTGTTCCCACTTCCCAGCAGACCCAGT-CTTGATATTCC-CTTTCCCTTTCCAATCCC
* ** * * *
69678406 TATTCTCCCTTCCACAAT-CCTCAATTCTTAAAATTTTCCTTATTTACTGCTTCTTTGGTGTTGC
635 TATTTTCCCTTCCTTAATCCCT-AATCCTTAAATTTTTCCTTATTTATTGCTTCTTTGGTGTTGC
* * * *
69678470 CACCATTGTTTCTTCTCTTACTTTTGCTGCTTTTCGTTCGTTTCGTTGTCATTGCCACCATTGTT
699 CACCATTGTTGCTTCTCTTCCTTTTGCTGCTTTTCGTT-GTTTCGTTGTCATTACCGCCATTGTT
* * * * * *
69678535 GCTCTTTTACCTTCTACTTAGTTTC-AGTTTCTTCCCCTGTTGTTAACTGTCACTGCTACTTTTC
763 GCTTTTTTACCTTCTACTTATTTTCTAG-TTCTTCGCCAGTCGTT-AGTGTCACTGCTACTTTTC
* *
69678599 ACTTCTCTACCTTC-AGTAAATTATGCAACCTCAATTCC-CTCACTCAA-
826 ACTTCTCTACCTTCTA-CAAATTCTGCAACCTCAATTCCTC-CACT-AAC
* * *
69678646 CCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAGCATCGCTACTCAT
1 CCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAACGTCGCTGCTCAT
* *
69678711 TTGTCTCCAACATTCACCCTTCAATCTCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTT
66 TTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAGTAGTTAC-T
* * * *
69678776 AAAAAAACTACTTATAATGATAATGCATACAATAGTTTTACCACCTGACATACTTTCACCAGCCT
130 AAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTTCACCAACCT
69678841 CAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTC
195 CAGTTCCCC-ACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTC
* * * *
69678906 CAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTTATCGTACATTATAATAACAGC
259 CAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAAC
* *
69678971 TAGTTAGTAGTTACTAAAATAACTACTTATTATGATAATGCATAGAATAATTTTATCACCTGACA
324 TAGTTAGTAGTTACTAAAA-AACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACA
* * *
69679036 CACTTTCATTCCCAATAATCTTTACTGTGGAATATAAAATGATCTCATTTTTCTTGGTTTGATAG
388 CACTTTCACTGCCAATAATCTTTACTGTGGAATATAAAATGATCTCATTTTTCTTGGTTTTATAG
* * * **
69679101 AA-TTTTTTCATAGAGATTTATTCTATATATTGCACTACCAGTCCATTTTAAAAATAGGTAGACC
453 AATTTTTTTCATAGAGATTTATTGTATATATTGCACTACCAGTCCATTTTAAAAATGGGTCGGGC
* *
69679165 TTCGAGCAAGGATTTTTCAACCCAGGCCCAGCCCGATTTTATTAACCTAAAAGGTTTACCCTTGT
518 TTCGAGCAAGGATTTTTCAACCCAAGCCCAGCCCGATTTTATTAACCTAAAAGTTTTACCCTTGT
* * *
69679230 TCCCACTTGCCAGCAGGCCCAGTCTTAATATTCCCATTTCCCTTTCCAATCCCTATTTTCCCTTC
583 TCCCACTTCCCAGCAGACCCAGTCTTGATATTCCC-TTTCCCTTTCCAATCCCTATTTTCCCTTC
* *
69679295 CTTAATCCCTAATCCTTAAATTTTCCCTTATTTATT-CTTTTTTGGTGTTGCCACCATTGTTGCT
647 CTTAATCCCTAATCCTTAAATTTTTCCTTATTTATTGCTTCTTTGGTGTTGCCACCATTGTTGCT
* * * * * *
69679359 ACTCTTCTTTTTACTGGTTTTCAGTT-TTTCGTTGTTATTACCGCCATTGTTACTTTTTTACCTT
712 TCTCTTCCTTTTGCTGCTTTTC-GTTGTTTCGTTGTCATTACCGCCATTGTTGCTTTTTTACCTT
* ** * * *
69679423 CTGCTTATTTTCTAGTTCTTTTCTAGTCGTTAGTGGTCACTGCTACTTTTCACTTCTCCATCTTC
776 CTACTTATTTTCTAGTTCTTCGCCAGTCGTTAGT-GTCACTGCTACTTTTCACTTCTCTACCTTC
69679488 TACAAATTCTGCAACCTCAATTCCTCCACTAAC
840 TACAAATTCTGCAACCTCAATTCCTCCACTAAC
* * * **
69679521 CCATTCACTCATTCACAGAGACAACACCCCCACCACGCTCTGAGACCTCCAATGTTACTGCTCAT
1 CCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAACGTCGCTGCTCAT
* * **
69679586 TTG-CATCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAGCAATTAGTTCTTAGTTACT
66 TTGTC-TCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAGTAGTTACT
* * * *
69679650 AAAACAGACTACTTATTATGATAATGAATACAATAAATTTACCACCTGACACACTTTCAACAACC
130 AAAA-AAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTTCACCAACC
* * *
69679715 TCAGCTCCCCTACTCACCCATTTACTCATTCACAAAGACAACACCCCCACCATGC-CGAGAGACC
194 TCAGTTCCCC-ACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTC-AGAGACC
* * * *
69679779 TCCAGCATCGTTACTCATTTGTCTACAACATTCAGCCTTCAGTCTCATCGTACATTGTAATAACA
257 TCCAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACA
* * * *
69679844 AGTAGTTAGTAGTTACTAAAAGACTACTTACTATGATAATGCATATAATAATTTTACCACCTGAC
322 ACTAGTTAGTAGTTACTAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGAC
*
69679909 ACACTTTCACTGCGAATAATCTTTACTGTGGAATATAAAATGATCTCATTTTTCTTGGTTTTATA
387 ACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAAATGATCTCATTTTTCTTGGTTTTATA
* * * * *
69679974 AAATTTTTTTCATAGAGAATTATTGTATGTATTGCACCACCAGTCCGTTTTAAAAATGGGTCGGG
452 GAATTTTTTTCATAGAGATTTATTGTATATATTGCACTACCAGTCCATTTTAAAAATGGGTCGGG
* * * *
69680039 CTTCGAGCAAGGATTTTTCAACCCAAGTCCAACTCGATTTTATTAACCTAAAATTTTTACCCTTG
517 CTTCGAGCAAGGATTTTTCAACCCAAGCCCAGCCCGATTTTATTAACCTAAAAGTTTTACCCTTG
* * * *
69680104 TTCCCACATCCCAGCAGGCCCAGTCTTGATATCCCCTTTTCCATTTCCAATCCCTATTTTCCCTT
582 TTCCCACTTCCCAGCAGACCCAGTCTTGATATTCCC-TTTCCCTTTCCAATCCCTATTTTCCCTT
**
69680169 CCTTAATCCCTAATCCTTAAATTTTTCCTTATTTATTGCTTCTTTGGTGTTGCCACCACCGTTGC
646 CCTTAATCCCTAATCCTTAAATTTTTCCTTATTTATTGCTTCTTTGGTGTTGCCACCATTGTTGC
* * ** * *
69680234 TTATCTACCTTTTGCTGCTTTTTATTTGTTTCGTTGTCATTGCAGCCATTGTTGCTTTTTTACCT
711 TTCTCTTCCTTTTGCTGC-TTTTCGTTGTTTCGTTGTCATTACCGCCATTGTTGCTTTTTTACCT
* * * * ** * *
69680299 TCTACTTATTTT-TTGCTTCTTCGCCAGTTGTTAGCTGCCACTGCTAATTTTTGCTTTTCTGCCT
775 TCTACTTATTTTCTAG-TTCTTCGCCAGTCGTTAG-TGTCACTGCTACTTTTCACTTCTCTACCT
* *
69680363 TCTACAAATTCTACAACCTCAATT-CTCCCACTCAC
838 TCTACAAATTCTGCAACCTCAATTCCT-CCACTAAC
* * * *
69680398 CCATTCACTCATTCACAAAAATAGA-ACCCCCACCACGCTCAAAGAACTCCAACGTCGCTGCTCA
1 CCATTCACTCATTCACAAAGACA-ACACCCCCACCACGCTCAGAGACCTCCAACGTCGCTGCTCA
* * * *
69680462 TTTCTCTCCAACATTCAGCTTTCAGT-TACATCGCACATTGTAATAACGACTAGTTAGTAGCTAC
65 TTTGTCTCCAACATTCAGCCTTCAGTCT-CATCGCACATTGTAATAACAACTAGTTAGTAGTTAC
* * * *
69680526 TAGAAAGAAACTACTTACTATGATAATGCATGCAATAATTTTCCCACCTGACACACTTTCACCAG
129 TA-AAA-AAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTTCACCAA
* * * *
69680591 CCTTAGTTCCCCTACTCATCCATTCACTCATTCACAAAGACATCACCCCCACCACGCTTAGAGAC
192 CCTCAGTTCCCC-ACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGAC
* *
69680656 CTCCAGTGTCGCTACTCATTTGTCTCCAACATTCAGCCTACAG--TCATCGCACATTGTAATAAC
256 CTCCAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAAC
* * * * *
69680719 AACTAGTTAATAATTACTTAAAAAACTACTTATTATGATAATGCATAAAATAAGTTTACCACCTA
321 AACTAGTTAGTAGTTAC-TAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTG
* * * * * *
69680784 ACACACTTTTACTGCCAATAATCTTTACTGTTGAATGTCAACTGATCCCATTTTTCTTGGTTTTA
385 ACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAAATGATCTCATTTTTCTTGGTTTTA
69680849 TAGAATTTTTTTCATAGAGATTTATTGTATATATTGCACTACCAGTCCATTTTAAAAATGGGTCG
450 TAGAATTTTTTTCATAGAGATTTATTGTATATATTGCACTACCAGTCCATTTTAAAAATGGGTCG
* * * * * *
69680914 GGCATCGAGTAAGGATTTTTCAACCCAAGCCTAACCCGACTTTATTAACCTAAAAGTTTTACACT
515 GGCTTCGAGCAAGGATTTTTCAACCCAAGCCCAGCCCGATTTTATTAACCTAAAAGTTTTACCCT
* * * *
69680979 TGTTCTCGCTTCCTAGCAGACCCAGTTTTGATATTCCTCTTTCCCTTTCCAATCCCTATTTTCCC
580 TGTTCCCACTTCCCAGCAGACCCAGTCTTGATATTCC-CTTTCCCTTTCCAATCCCTATTTTCCC
* * * *
69681044 TTCTTTAATCCCTAATCCTTAAATTTTTCCTTATTTATTGCATCTTTGGAGTTGCCACCGTTGTT
644 TTCCTTAATCCCTAATCCTTAAATTTTTCCTTATTTATTGCTTCTTTGGTGTTGCCACCATTGTT
* * *
69681109 GCTTTTCTTCCTTTTGCTGCTTATCGTTTGTTTCATTGTCATT-CTCGCCATTGTTGCTTTTTTA
709 GCTTCTCTTCCTTTTGCTGCTTTTCG-TTGTTTCGTTGTCATTAC-CGCCATTGTTGCTTTTTTA
* * * * *
69681173 CCTTCTACTTAGTTTT-TACTACTTCGCAAGTCGTTA--G--AC-G---C----CGC-T-GCTA-
772 CCTTCTACTTA-TTTTCTAGTTCTTCGCCAGTCGTTAGTGTCACTGCTACTTTTCACTTCTCTAC
**
69681222 ---CT-----TT-T-C-ACCTC---T-CT--ACTCTC
836 CTTCTACAAATTCTGCAACCTCAATTCCTCCACTAAC
* * * *
69681242 CCATTCACTCATTCACAAAGACAACACCCCCACCACGATCAAAGACCTCCAGCGTCGCCGCTCAT
1 CCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAACGTCGCTGCTCAT
* *
69681307 TTGTCTCCAACATACAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTATTAGTTACTA
66 TTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTA
* *
69681372 AAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGGCACACTTTCACCAACATC
131 AAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTTCACCAACCTC
* * * *
69681437 AGTTCCCCACTCAACCATTCACTCATTCACAAACACAACACCCCCACCACGCTTAGAGACCTCTA
196 AGTTCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCA
69681502 GCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTA
261 GCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTA
* * * * *
69681567 GTTTGTAGTTACTAAAAAAACTACTTATTTTGATAATGTATACAATAATTTTACCACTTGATACA
326 GTTAGTAGTTACT-AAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACA
* * *
69681632 CTTTCACTGCCAATAATCTTTATTGTGGAATAAAAAATTATCTCATTTTTCTTGGTTTTATAGAA
390 CTTTCACTGCCAATAATCTTTACTGTGGAATATAAAATGATCTCATTTTTCTTGGTTTTATAGAA
* * * *
69681697 TTTTTTTCATACAGAATTATTGTATGTATTGCACTACCAGTCCATTTTAAAAATGGGTCAGGCTT
455 TTTTTTTCATAGAGATTTATTGTATATATTGCACTACCAGTCCATTTTAAAAATGGGTCGGGCTT
* * *
69681762 CGAGCGAGGATTTTTCAACCCAAGCCCAGACCAATTTTATTAACCTAAAAGTTTTACCCTTGTTC
520 CGAGCAAGGATTTTTCAACCCAAGCCCAGCCCGATTTTATTAACCTAAAAGTTTTACCCTTGTTC
* * * * *
69681827 CCACTTCCCAGTAGACCTAGTCTTGATATACCCCTTTTCCATTTCCAATCCCCATTTTCCCTTCC
585 CCACTTCCCAGCAGACCCAGTCTTGATAT-TCCC-TTTCCCTTTCCAATCCCTATTTTCCCTTCC
* * * * * **
69681892 TTAGTCCCAAATCCTTCAATTTTTCCTTATTTATTGCTTCTTTAGTGTTTCCACTGTTGTTGCTT
648 TTAATCCCTAATCCTTAAATTTTTCCTTATTTATTGCTTCTTTGGTGTTGCCACCATTGTTGCTT
* * * * * **
69681957 TTCTGCATTTTGCTGCTTTTCGATTGTTTCATTGTCATTACCGCCATTATTGCTTCCTTACCTTC
713 CTCTTCCTTTTGCTGCTTTTCG-TTGTTTCGTTGTCATTACCGCCATTGTTGCTTTTTTACCTTC
** * * * * *
69682022 TA-TTGAGCTTCTACTTCTTCACCAGTCATTAGTCGTCGCTGCTA-TTTATCGCTTCTCTACCTT
777 TACTT-ATTTTCTAGTTCTTCGCCAGTCGTTAGT-GTCACTGCTACTTT-TCACTTCTCTACCTT
** * * *
69682085 CTACAAATTCTGCAATGTCAGTTCCCCCACTCAC
839 CTACAAATTCTGCAACCTCAATTCCTCCACTAAC
* * ** * * * * *
69682119 CCATTCACTCATTCACAAAGACAACAACCGCACCATACTCAGAGACCTCCAGCATCGTTGTTTAT
1 CCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAACGTCGCTGCTCAT
* *
69682184 TTGTCTCCAACAATCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAGTAGGTACTA
66 TTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTA
* * * *
69682249 TAAAAACTACTTATTATGATAATGCATACAATAATTTTACAACTTGACACACTTTCACCAACCTT
131 AAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTTCACCAACCTC
*
69682314 AGTTTCCCCACTCAGCCATTCACTCATTCACAAAGACAACACCCCCACCACGAC-CAGAGACCTC
196 AG-TTCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACG-CTCAGAGACCTC
* * * *
69682378 TAGCGTCGCTACTCATTTGTCTCCAACATTTAGCCTTCAGTCTCATCGCACATTGTAATAATAGC
259 CAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAAC
* * * *
69682443 TAGTTAGTAATTACTAACAAAAACTACTCAATATGATAATGCATTCAATAATTTTACCACCTGAC
324 TAGTTAGTAGTTACT-A-AAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGAC
69682508 ACACTT
387 ACACTT
69682514 ACACCAACCT
Statistics
Matches: 3374, Mismatches: 405, Indels: 177
0.85 0.10 0.04
Matches are distributed among these distances:
841 89 0.03
842 64 0.02
843 283 0.08
844 280 0.08
845 2 0.00
847 4 0.00
849 1 0.00
850 6 0.00
851 1 0.00
852 1 0.00
853 2 0.00
857 3 0.00
858 3 0.00
859 3 0.00
862 2 0.00
863 3 0.00
864 2 0.00
868 2 0.00
869 1 0.00
870 1 0.00
871 4 0.00
872 2 0.00
874 116 0.03
875 621 0.18
876 262 0.08
877 974 0.29
878 475 0.14
879 51 0.02
882 2 0.00
884 1 0.00
886 113 0.03
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.35
Consensus pattern (872 bp):
CCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAACGTCGCTGCTCAT
TTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTA
AAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTTCACCAACCTC
AGTTCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCA
GCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTA
GTTAGTAGTTACTAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACAC
TTTCACTGCCAATAATCTTTACTGTGGAATATAAAATGATCTCATTTTTCTTGGTTTTATAGAAT
TTTTTTCATAGAGATTTATTGTATATATTGCACTACCAGTCCATTTTAAAAATGGGTCGGGCTTC
GAGCAAGGATTTTTCAACCCAAGCCCAGCCCGATTTTATTAACCTAAAAGTTTTACCCTTGTTCC
CACTTCCCAGCAGACCCAGTCTTGATATTCCCTTTCCCTTTCCAATCCCTATTTTCCCTTCCTTA
ATCCCTAATCCTTAAATTTTTCCTTATTTATTGCTTCTTTGGTGTTGCCACCATTGTTGCTTCTC
TTCCTTTTGCTGCTTTTCGTTGTTTCGTTGTCATTACCGCCATTGTTGCTTTTTTACCTTCTACT
TATTTTCTAGTTCTTCGCCAGTCGTTAGTGTCACTGCTACTTTTCACTTCTCTACCTTCTACAAA
TTCTGCAACCTCAATTCCTCCACTAAC
Found at i:69679863 original size:211 final size:207
Alignment explanation
Indices: 69679519--69679917 Score: 570
Period size: 211 Copynumber: 1.9 Consensus size: 207
69679509 TCCTCCACTA
* *
69679519 ACCCATTCACTCATTCACAGAGACAACACCCCCACCACGCTCTGAGACCTCCAATGTTACTGCTC
1 ACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAATGTTAC--CTC
* * * **
69679584 ATTTGCATCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAGCAATTAGTTCTTAGTTAC
64 ATTTGCATACAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAAGTAGTTAGTAGTTAC
*
69679649 TAAAACAGACTACTTATTATGATAATGAATACAATAAATTTACCACCTGACACACTTTCAACAAC
129 T-AAA-AGACTACTTACTATGATAATGAATACAATAAATTTACCACCTGACACACTTTCAACAAC
69679714 CTCAGCTCCCCTACTC
192 CTCAGCTCCCCTACTC
* *
69679730 ACCCATTTACTCATTCACAAAGACAACACCCCCACCATGC-CGAGAGACCTCCAGCATCGTTA-C
1 ACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTC-AGAGACCTCCA--AT-GTTACC
*
69679793 TCATTTGTC-TACAACATTCAGCCTTCAGTCTCATCGTACATTGTAATAACAAGTAGTTAGTAGT
62 TCATTTG-CATACAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAAGTAGTTAGTAGT
* * *
69679857 TACTAAAAGACTACTTACTATGATAATGCATATAATAATTTTACCACCTGACACACTTTCA
126 TACTAAAAGACTACTTACTATGATAATGAATACAATAAATTTACCACCTGACACACTTTCA
69679918 CTGCGAATAA
Statistics
Matches: 169, Mismatches: 14, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
209 50 0.30
210 4 0.02
211 108 0.64
212 1 0.01
213 2 0.01
214 4 0.02
ACGTcount: A:0.33, C:0.29, G:0.10, T:0.28
Consensus pattern (207 bp):
ACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAATGTTACCTCAT
TTGCATACAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAAGTAGTTAGTAGTTACTA
AAAGACTACTTACTATGATAATGAATACAATAAATTTACCACCTGACACACTTTCAACAACCTCA
GCTCCCCTACTC
Found at i:69681603 original size:209 final size:209
Alignment explanation
Indices: 69681242--69681638 Score: 661
Period size: 209 Copynumber: 1.9 Consensus size: 209
69681232 CTCTACTCTC
* *
69681242 CCATTCACTCATTCACAAAGACAACACCCCCACCACGATCAAAGACCTCCAGCGTCGCCGCTCAT
1 CCATTCACTCATTCACAAACACAACACCCCCACCACGATCAAAGACCTCCAGCGTCGCCACTCAT
69681307 TTGTCTCCAACATACAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTATTAGTTACTA
66 TTGTCTCCAACATACAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTATTAGTTACTA
*
69681372 AAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGGCACACTTTCACCAACATC
131 AAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTTCACCAACATC
69681437 AGTTCCCCACTCAA
196 AGTTCCCCACTCAA
* * * * *
69681451 CCATTCACTCATTCACAAACACAACACCCCCACCACGCTTAGAGACCTCTAGCGTCGCTACTCAT
1 CCATTCACTCATTCACAAACACAACACCCCCACCACGATCAAAGACCTCCAGCGTCGCCACTCAT
*
69681516 TTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTT-TGTAGTTACT
66 TTGTCTCCAACATACAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAT-TAGTTACT
* * * *
69681580 AAAAAAACTACTTATTTTGATAATGTATACAATAATTTTACCACTTGATACACTTTCAC
130 AAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTTCAC
69681639 TGCCAATAAT
Statistics
Matches: 174, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
208 1 0.01
209 173 0.99
ACGTcount: A:0.33, C:0.30, G:0.09, T:0.28
Consensus pattern (209 bp):
CCATTCACTCATTCACAAACACAACACCCCCACCACGATCAAAGACCTCCAGCGTCGCCACTCAT
TTGTCTCCAACATACAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTATTAGTTACTA
AAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTTCACCAACATC
AGTTCCCCACTCAA
Found at i:69682564 original size:211 final size:210
Alignment explanation
Indices: 69682102--69682723 Score: 872
Period size: 211 Copynumber: 3.0 Consensus size: 210
69682092 TTCTGCAATG
* * *
69682102 TCAGTTCCCCCACTCACCCATTCACTCATTCACAAAGACAACAACCGCACCA-TACTCAGAGACC
1 TCAGTT-CCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGACTCAGAGACC
* * ** * * *
69682166 TCCAGCATCGTTGTTTATTTGTCTCCAACAATCAGCCTTCAGTCTCATCGCACATTGTAATAACA
65 TCCAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAATA
* * * *
69682231 ACTAGTTAGTAGGTACTATAAAAACTACTTATTATGATAATGCATACAATAATTTTACAACTTGA
130 ACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGA
*
69682296 CACACTTTCACCAACC
195 CACACTTACACCAACC
* *
69682312 TTAGTTTCCCCACTCAGCCATTCACTCATTCACAAAGACAACACCCCCACCACGAC-CAGAGACC
1 TCAG-TTCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGACTCAGAGACC
* *
69682376 TCTAGCGTCGCTACTCATTTGTCTCCAACATTTAGCCTTCAGTCTCATCGCACATTGTAATAATA
65 TCCAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAATA
* * * * *
69682441 GCTAGTTAGTAATTACTAACAAAAACTACTCAATATGATAATGCATTCAATAATTTTACCACCTG
130 ACTAGTTAGTAGTTACTAA-AAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTG
69682506 ACACACTTACACCAACC
194 ACACACTTACACCAACC
* *
69682523 TCAGTTCCCCTACTCACCCATTCATTCATTCACAAAGACAACACCCCCACCACG-CTCAAAGACC
1 TCAGTTCCCC-ACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGACTCAGAGACC
* * * *
69682587 TCCAGCGTCACTACTCATTTGTCACCAACATTCAACATTCAGTCTCATCGCACATTGTAATAATA
65 TCCAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAATA
* ** * *
69682652 ACTAGTTAGTAGTTACTAAAATAACTACTTATTACAATAATGCCTACAATAATTTTACCACCTAA
130 ACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGA
69682717 CACACTT
195 CACACTT
69682724 TCAATGCCAA
Statistics
Matches: 363, Mismatches: 44, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
210 176 0.48
211 187 0.52
ACGTcount: A:0.33, C:0.30, G:0.09, T:0.28
Consensus pattern (210 bp):
TCAGTTCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGACTCAGAGACCT
CCAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAATAA
CTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGAC
ACACTTACACCAACC
Found at i:69683694 original size:210 final size:210
Alignment explanation
Indices: 69683185--69683815 Score: 1028
Period size: 210 Copynumber: 3.0 Consensus size: 210
69683175 TTAAATTCTG
* * *
69683185 CAACCTCAATTCCCCCACTCAACCATTCACTCATTCACAAAGACAACACCCCCATCACGCTCAGA
1 CAACCTCACTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCATCACGCTCAGA
69683250 GACCTCCAGCATCGCTGCTCATTTATCTCCAACATTCACCCTACAGTCTAATCACACATTGTAAT
66 GACCTCCAGCATCGCTGCTCATTTATCTCCAACATTCACCCTACAGTCTAATCACACATTGTAAT
69683315 AACAACTAGTTAGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATACAATAGTTGTACCA
131 AACAACTAGTTAGTAGTTACT-AAAAAAACTACTTATTATGATAATGCATACAATAGTTGTACCA
69683380 CCTGACATACTTTCAC
195 CCTGACATACTTTCAC
69683396 CAACCTCACTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCATCACGCTCAGA
1 CAACCTCACTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCATCACGCTCAGA
69683461 GACCTCCAGCATCGCTGCTCATTTATCTCCAACATTCACCCTACAGTCTAATCACACATTGTAAT
66 GACCTCCAGCATCGCTGCTCATTTATCTCCAACATTCACCCTACAGTCTAATCACACATTGTAAT
**
69683526 AACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATATATACAATAGTTGTACCAC
131 AACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAGTTGTACCAC
69683591 CTGACATACTTTCAC
196 CTGACATACTTTCAC
* *
69683606 CAACCTCACTTCCCCTACTCACCCATTCACTCATTCATAAAGACAACACCCCCACCACGCTCAGA
1 CAACCTCACTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCATCACGCTCAGA
** * * * * * * * * **
69683671 GACCTCCAGTGTCACTACTCATTTGTCTCTAACTTTCAGCCTTCAGTCTCATCGTACATTGTAAT
66 GACCTCCAGCATCGCTGCTCATTTATCTCCAACATTCACCCTACAGTCTAATCACACATTGTAAT
* * * * *
69683736 AAAAACTAGTTAATAGTTACTAAAATAACTACTTATTATGATAATGCATACAATAATTTTACCAC
131 AACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAGTTGTACCAC
*
69683801 CTGACACACTTTCAC
196 CTGACATACTTTCAC
69683816 TACTAATAAT
Statistics
Matches: 393, Mismatches: 27, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
210 245 0.62
211 148 0.38
ACGTcount: A:0.34, C:0.31, G:0.08, T:0.28
Consensus pattern (210 bp):
CAACCTCACTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCATCACGCTCAGA
GACCTCCAGCATCGCTGCTCATTTATCTCCAACATTCACCCTACAGTCTAATCACACATTGTAAT
AACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAGTTGTACCAC
CTGACATACTTTCAC
Found at i:69684060 original size:19 final size:20
Alignment explanation
Indices: 69684036--69684075 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
69684026 GATATTCCCC
*
69684036 TTTTCCGTTCC-AATCCCTA
1 TTTTCCCTTCCTAATCCCTA
69684055 TTTTCCCTTCCTTAATCCCTA
1 TTTTCCCTTCC-TAATCCCTA
69684076 ATCCTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
21 8 0.44
ACGTcount: A:0.15, C:0.38, G:0.03, T:0.45
Consensus pattern (20 bp):
TTTTCCCTTCCTAATCCCTA
Found at i:69684657 original size:210 final size:210
Alignment explanation
Indices: 69684287--69684690 Score: 643
Period size: 211 Copynumber: 1.9 Consensus size: 210
69684277 CAATTCCTTC
* * *
69684287 ACTCACCCATTCAGTCATTCACAGAGACAACACCCCTCCACGCTCAGAGACCTCCAATGTCACTA
1 ACTCACCCATTCACTCATTCACAAAGACAACACCCCACCACGCTCAGAGACCTCCAATGTCACTA
*
69684352 CTCATTTGTATCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTCGTAGT
66 CTCATTTGTATCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAGTAGT
* *
69684417 TACTAAAAAAAACTACTTATTATGATAATGCATGCAATAAATTTACCACCTGACACACTTTCACC
131 TACTAAAAAAAACTACTTATTATGATAATGCATACAATAAATTTACCACCTGACACAATTTCACC
69684482 AACCTCAGCCCCCCT
196 AACCTCAGCCCCCCT
*
69684497 ACTCACCCATTCACTCATTCACAAAGACAACACGCCCACCACGCTCAGAGACCTCCAGCAT-T-G
1 ACTCACCCATTCACTCATTCACAAAGACAACAC-CCCACCACGCTCAGAGACCTCCA--ATGTCA
* **
69684560 CTACTCATTTGTCTCCAACATTTGGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAGT
63 CTACTCATTTGTATCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAGT
* * *
69684625 AGTTACT-AATAAAACTACTTATTTTGATAATGCATACAATAATTTTACCACCTGACACAATTTC
128 AGTTACTAAAAAAAACTACTTATTATGATAATGCATACAATAAATTTACCACCTGACACAATTTC
69684689 AC
193 AC
69684691 TGCCAATAAT
Statistics
Matches: 178, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
210 85 0.48
211 90 0.51
212 1 0.01
213 2 0.01
ACGTcount: A:0.32, C:0.30, G:0.10, T:0.27
Consensus pattern (210 bp):
ACTCACCCATTCACTCATTCACAAAGACAACACCCCACCACGCTCAGAGACCTCCAATGTCACTA
CTCATTTGTATCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAGTAGT
TACTAAAAAAAACTACTTATTATGATAATGCATACAATAAATTTACCACCTGACACAATTTCACC
AACCTCAGCCCCCCT
Found at i:69685482 original size:876 final size:873
Alignment explanation
Indices: 69683396--69685828 Score: 3354
Period size: 876 Copynumber: 2.8 Consensus size: 873
69683386 ATACTTTCAC
* * * *
69683396 CAACCTCACTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCATCACGCTCAGA
1 CAACCTCAATTCCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCTACCACGCTCAGA
** * * * * *
69683461 GACCTCCAGCATCGCTGCTCATTTATCTCCAACATTCACCCTACAGTCTAATCACACATTGTAAT
66 GACCTCCAGTGTCGCTGCTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAAT
** * * *
69683526 AACAACTAGTTAGTAGTTACT-AAAAAAACTACTTATTATGATAATATATACAATAGTTGTACCA
131 AACAACTAGTTAGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATGCAATAATTTTACCA
* * *
69683590 CCTGACATACTTTCACCAACCTCACTTCCCCTACTCACCCATTCACTCATTCATAAAGACAACAC
196 CCTGACACACTTTCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACAC
* * *
69683655 CCCCACCACGCTCAGAGACCTCCAGTGTCACTACTCATTTGTCTCTAACTTTCAGCCTTCAGTC-
261 CCCCACCACGCTCAGAGACCTCCAGCGTCACTACTCATTTGTCTCCAACATTCAGCCTTCAGTCA
*
69683719 TCATCGTACATTGTAATAAAAACTAGTTAATAGTTACTAA-AATAACTACTTATTATGATAATGC
326 TCA-C--ACATTGTAATAACAACTAGTTAATAGTTACTAATAA-AACTACTTATTATGATAATGC
* * *
69683783 ATACAATAATTTTACCACCTGACACACTTTCACTACTAATAATCTTTACTGTGGAATATAAAATG
387 ATACAATAATTTTACCACCTGACACACTTTCACTGCCAATAATCTTTACTGTGGAATAT-AAATA
* * *
69683848 ATCTCATTTTTATTGGTTTTATAG-CTTTTTTCATAGAGATTTATTCTATATATTGCACTACCAG
451 ATCTCATTTTTCTTGGTTTTATAGAATTTTTTCATAGAGATTTATTGTATATATTGCACTACCAG
* * * * *
69683912 TCCGTTTTAAAAATAGGTCGAGCTTCGAGCAAGGATTTTTCAACCCAGGCCCAGCCCGATTTTAT
516 TCCGTTTTAAAAATGGGTCG-GCTTCGAACTAGGATTTTTCAACCCAAGCCCAGCCTGATTTTAT
* *
69683977 TAACCTAAAAGGTTTACCCTTGTTCCCACTTCCCACTAGACCCAGTCTTGATATTCCCCTTT-TC
580 TAACCTAAAAGTTTTACCCTTGTTCCCACTTCCCACTAGACCCAGTCTTTATATTCCCCTTTCT-
* * *
69684041 CGTT-CCAATCCCTATTTTCCCTTCCTTAATCCCTAATCCTTAAATTTTTACTTATTTATTGCTT
644 C-TTCCCAATCCCTATTTTCCCTTCCTTAATCCCTGATCCTTAAATTTTTACCTATTTATTACTT
* * ** *
69684105 CTTTGGTGTTGCCACCATTGTTGTTTCTCTTCTTTTTACTGGTTTTCAGTTGTTTCATTATTATT
708 CTTTAGTGTTGCCACCATTATTGTTTCTCTTCTTTTTACTACTTTTCAGTTGTTTCATTATCATT
* * * *
69684170 GCCGTCATTGTTGCTTTTTTACCTTCTGCTAAGTTTCTACTTCTTCGCTAGTCATTAGTTGCCAC
773 GCAGCCATTGTTGCTTTTTTACCTTCTGCTAAGTTTCTACTTATTCGCTAGTCATTAGATGCCAC
*
69684235 TGCTACTTTTCGCTTCTCCACCTTCTGCAAATTCTG
838 TGCTACTTTTCGCTTCTCCACCTTCTGCAAATTCTA
** * *
69684271 CAACCTCAATTCCTTCACTCACCCATTCAGTCATTCACAGAGACAACACCCCT-CCACGCTCAGA
1 CAACCTCAATTCCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCTACCACGCTCAGA
* * * *
69684335 GACCTCCAATGTCACTACTCATTTGTATCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAAT
66 GACCTCCAGTGTCGCTGCTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAAT
* *
69684400 AACAACTAGTTCGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATGCAATAAATTTACCA
131 AACAACTAGTTAGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATGCAATAATTTTACCA
**
69684465 CCTGACACACTTTCACCAACCTCAGCCCCCCTACTCACCCATTCACTCATTCACAAAGACAACAC
196 CCTGACACACTTTCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACAC
* * ** **
69684530 GCCCACCACGCTCAGAGACCTCCAGCATTGCTACTCATTTGTCTCCAACATTTGGCCTTCAGTCT
261 CCCCACCACGCTCAGAGACCTCCAGCGTCACTACTCATTTGTCTCCAACATTCAGCCTTCAG--T
* * *
69684595 CATCGCACATTGTAATAACAACTAGTTAGTAGTTACTAATAAAACTACTTATTTTGATAATGCAT
324 CATCACACATTGTAATAACAACTAGTTAATAGTTACTAATAAAACTACTTATTATGATAATGCAT
* * *
69684660 ACAATAATTTTACCACCTGACACAATTTCACTGCCAATAATCTTTACTGTTGAATATAAATTATC
389 ACAATAATTTTACCACCTGACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAATAATC
* * *
69684725 TCATTTTTCTTGGTTTTATAGAATTTTTATCATAAAGAATTATTGTATGTATTGCACTACCAGTC
454 TCATTTTTCTTGGTTTTATAGAATTTTT-TCATAGAGATTTATTGTATATATTGCACTACCAGTC
* *
69684790 CATTTTAAAAATGGGTCAGGCTTCGAACTAGGATTTTTCATCCCAAGCCCAGCCTGATTTTATTA
518 CGTTTTAAAAATGGGTC-GGCTTCGAACTAGGATTTTTCAACCCAAGCCCAGCCTGATTTTATTA
* * * * * *
69684855 ATCTAAAAGTTTTTCCCTTGTTCCCTCTACCCAGCTA-ACCTAGTCTTTATATTCTCCTTTCTCT
582 ACCTAAAAGTTTTACCCTTGTTCCCACTTCCCA-CTAGACCCAGTCTTTATATTCCCCTTTCTCT
* * * *
69684919 TCCCAATCCCTATTTTTCCTTCCTCAATCCCTGATCCTTAATTTTTTCCCTATTTATTACTTCTT
646 TCCCAATCCCTATTTTCCCTTCCTTAATCCCTGATCCTTAAATTTTTACCTATTTATTACTTCTT
* * *
69684984 TAGTGTTGCCACCATTATT-TCTTCTCTGTC-TTTTGCTACTTTTC-GTTTGTTTCGTTGTCATT
711 TAGTGTTGCCACCATTATTGT-TTCTCT-TCTTTTTACTACTTTTCAG-TTGTTTCATTATCATT
* * * ** *
69685046 GCAGCCATTGTTTCTTTTTTACCTTCTGC-ATAGTTTTTGCTTATTCGCTAGTTGTTAGATGCCG
773 GCAGCCATTGTTGCTTTTTTACCTTCTGCTA-AGTTTCTACTTATTCGCTAGTCATTAGATGCCA
*
69685110 CTGCTACTTTTCGCTTCTCTACCTTCTGCAAATTCTA
837 CTGCTACTTTTCGCTTCTCCACCTTCTGCAAATTCTA
* * *
69685147 CAACCTCAATTCCCCCACTCTCCCATTCACTCATTCACAAAGACAGCACCCCTACCACGCTCAAA
1 CAACCTCAATTCCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCTACCACGCTCAGA
* * * *
69685212 GACCTCTAGTGTCGCTGCTCATTTGTCTCCAACATTCAGCTTTCAGTTTCATCGTACATTGTAAT
66 GACCTCCAGTGTCGCTGCTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAAT
* *
69685277 AACGACTAGTTAGTAGTTACTAAAAAGAAACTACTTACTATGATAATGCATGCAATAATTTTACC
131 AACAACTAGTTAGTAGTTACTAAAAA-AAACTACTTATTATGATAATGCATGCAATAATTTTACC
* * * * *
69685342 ACCTGACACACTTTCACCAGCCTCAGTTCCCCTACTTATCCATTCACTCATTCACAAAGATATCA
195 ACCTGACACACTTTCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACA
* *
69685407 CCCCCACCATGCTTAGAGACCTCCAGCGTCACTACTCATTTGTCTCCAACATTCAGCCTTCAGTC
260 CCCCCACCACGCTCAGAGACCTCCAGCGTCACTACTCATTTGTCTCCAACATTCAGCCTTCAGTC
*
69685472 ATCACACATTGTAATAACAACTAGTTAATAGTTACT-ATAAAAACTACTTACTATGATAATGCAT
325 ATCACACATTGTAATAACAACTAGTTAATAGTTACTAAT-AAAACTACTTATTATGATAATGCAT
* * *
69685536 AAAATAATTTTACCACCTGACACACTTTTACTGCCAATAATCTTTACTGTGGAATGTAAACTAAT
389 ACAATAATTTTACCACCTGACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAA-TAAT
* * *
69685601 GTCATTTTTCTTAGTTTTATAGAATATTTTTCATAGAGATTTATTGTATATATTGCACTACTAGT
453 CTCATTTTTCTTGGTTTTATAGAAT-TTTTTCATAGAGATTTATTGTATATATTGCACTACCAGT
* * * *
69685666 CCGTTTTACAAATGGGTCGGGTTTCG-AGTAAGGATTTTTCAACCCAAGCCCCA-CTTGATTTTA
517 CCGTTTTAAAAATGGGTC-GGCTTCGAACT-AGGATTTTTCAACCCAAG-CCCAGCCTGATTTTA
*
69685729 TTAACCTAAAAGTTTTACCCTTGTTCCCGCTTCCCAAC-AGACCCAGT-TTTGATATTCCCCTTT
579 TTAACCTAAAAGTTTTACCCTTGTTCCCACTTCCC-ACTAGACCCAGTCTTT-ATATTCCCCTTT
*
69685792 C-CCTCTCCAATCCCTATTTTCCCTTCCTTAATCCCTG
642 CTCTTC-CCAATCCCTATTTTCCCTTCCTTAATCCCTG
69685829 TATGGCCCAA
Statistics
Matches: 1369, Mismatches: 163, Indels: 50
0.87 0.10 0.03
Matches are distributed among these distances:
874 111 0.08
875 314 0.23
876 499 0.36
877 285 0.21
878 160 0.12
ACGTcount: A:0.27, C:0.27, G:0.10, T:0.36
Consensus pattern (873 bp):
CAACCTCAATTCCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCTACCACGCTCAGA
GACCTCCAGTGTCGCTGCTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAAT
AACAACTAGTTAGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATGCAATAATTTTACCA
CCTGACACACTTTCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACAC
CCCCACCACGCTCAGAGACCTCCAGCGTCACTACTCATTTGTCTCCAACATTCAGCCTTCAGTCA
TCACACATTGTAATAACAACTAGTTAATAGTTACTAATAAAACTACTTATTATGATAATGCATAC
AATAATTTTACCACCTGACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAATAATCTC
ATTTTTCTTGGTTTTATAGAATTTTTTCATAGAGATTTATTGTATATATTGCACTACCAGTCCGT
TTTAAAAATGGGTCGGCTTCGAACTAGGATTTTTCAACCCAAGCCCAGCCTGATTTTATTAACCT
AAAAGTTTTACCCTTGTTCCCACTTCCCACTAGACCCAGTCTTTATATTCCCCTTTCTCTTCCCA
ATCCCTATTTTCCCTTCCTTAATCCCTGATCCTTAAATTTTTACCTATTTATTACTTCTTTAGTG
TTGCCACCATTATTGTTTCTCTTCTTTTTACTACTTTTCAGTTGTTTCATTATCATTGCAGCCAT
TGTTGCTTTTTTACCTTCTGCTAAGTTTCTACTTATTCGCTAGTCATTAGATGCCACTGCTACTT
TTCGCTTCTCCACCTTCTGCAAATTCTA
Found at i:69685921 original size:12 final size:12
Alignment explanation
Indices: 69685904--69685929 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
69685894 ACAACCTCCA
69685904 AAGCCCAAACCT
1 AAGCCCAAACCT
69685916 AAGCCCAAACCT
1 AAGCCCAAACCT
69685928 AA
1 AA
69685930 ATGCACCTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.38, G:0.08, T:0.08
Consensus pattern (12 bp):
AAGCCCAAACCT
Found at i:69686020 original size:13 final size:13
Alignment explanation
Indices: 69686002--69686110 Score: 90
Period size: 13 Copynumber: 8.6 Consensus size: 13
69685992 AAATATCTTT
69686002 ACTCCACTAAACC
1 ACTCCACTAAACC
69686015 ACT-C-C--AACC
1 ACTCCACTAAACC
69686024 ACTCCACTAAACC
1 ACTCCACTAAACC
*
69686037 ACTCCAACCACTGTAACC
1 ACT----CCACT-AAACC
*
69686055 ACTCCACTAAGCC
1 ACTCCACTAAACC
*
69686068 ACTACACTAAACC
1 ACTCCACTAAACC
69686081 ACTCCACTAAACC
1 ACTCCACTAAACC
69686094 AC-CC-C--AACC
1 ACTCCACTAAACC
69686103 ACTCCACT
1 ACTCCACT
69686111 TGCCTACAAA
Statistics
Matches: 78, Mismatches: 6, Indels: 25
0.72 0.06 0.23
Matches are distributed among these distances:
9 13 0.17
10 3 0.04
11 4 0.05
12 3 0.04
13 38 0.49
14 5 0.06
17 5 0.06
18 7 0.09
ACGTcount: A:0.36, C:0.48, G:0.02, T:0.15
Consensus pattern (13 bp):
ACTCCACTAAACC
Found at i:69686027 original size:22 final size:22
Alignment explanation
Indices: 69686002--69686048 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
69685992 AAATATCTTT
69686002 ACTCCACTAAACCACTCCAACC
1 ACTCCACTAAACCACTCCAACC
69686024 ACTCCACTAAACCACTCCAACC
1 ACTCCACTAAACCACTCCAACC
69686046 ACT
1 ACT
69686049 GTAACCACTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.49, G:0.00, T:0.15
Consensus pattern (22 bp):
ACTCCACTAAACCACTCCAACC
Found at i:69686047 original size:31 final size:31
Alignment explanation
Indices: 69686011--69686108 Score: 116
Period size: 31 Copynumber: 3.3 Consensus size: 31
69686001 TACTCCACTA
69686011 AACCACTCCAACCACTCCACTAAACCACTCC
1 AACCACTCCAACCACTCCACTAAACCACTCC
** *
69686042 AACCACTGTAACCACTCCACTAAGCCACT--
1 AACCACTCCAACCACTCCACTAAACCACTCC
* *
69686071 -A-CACT-AAACCACTCCACTAAACCACCCC
1 AACCACTCCAACCACTCCACTAAACCACTCC
69686099 AACCACTCCA
1 AACCACTCCA
69686109 CTTGCCTACA
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
26 18 0.33
27 4 0.07
28 1 0.02
29 1 0.02
30 4 0.07
31 27 0.49
ACGTcount: A:0.37, C:0.48, G:0.02, T:0.13
Consensus pattern (31 bp):
AACCACTCCAACCACTCCACTAAACCACTCC
Found at i:69689395 original size:19 final size:19
Alignment explanation
Indices: 69689373--69689419 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
69689363 ATTCCTTTCT
*
69689373 TTTGCATT-CATTCCACACA
1 TTTGCATTACATTACA-ACA
69689392 TTTGCATTACATTACAACA
1 TTTGCATTACATTACAACA
69689411 TTTGCATTA
1 TTTGCATTA
69689420 AACTTTACTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.30, C:0.23, G:0.06, T:0.40
Consensus pattern (19 bp):
TTTGCATTACATTACAACA
Found at i:69692690 original size:20 final size:19
Alignment explanation
Indices: 69692642--69692692 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
69692632 AAAGAGAGCC
*
69692642 CTAAAAAAACACAAAAAAA
1 CTAAAAAAAAACAAAAAAA
* *
69692661 CAAAACAAAAAACAAAAAATT
1 CTAAA-AAAAAACAAAAAA-A
69692682 CTAAAAAAAAA
1 CTAAAAAAAAA
69692693 GCGGAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 4 0.15
20 18 0.69
21 4 0.15
ACGTcount: A:0.78, C:0.14, G:0.00, T:0.08
Consensus pattern (19 bp):
CTAAAAAAAAACAAAAAAA
Found at i:69694585 original size:205 final size:205
Alignment explanation
Indices: 69694082--69694564 Score: 786
Period size: 205 Copynumber: 2.4 Consensus size: 205
69694072 CGGAAAGTAG
*
69694082 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACATTGAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
* *
69694147 TCTCTGTATTGTTAGAGAACAAATCGAAGTCTAGCATCTCCACTTCGACGGAAGGCAGACACATA
66 TCTCTGTATTGTCAGAGAACAAATTGAAGTCTAGCATCTCCACTTCGACGGAAGGCAGACACATA
* * * *
69694212 GCAGATCCAACCTTCAGATGTTTATACTGAAATAGATCCAAGATGGTTTGGCATCCTTGTGCTTA
131 GCAGATCCAACCTTCAAATATTTATACTGAAACAGATCCAAGATGGTTTGCCATCCTTGTGCTTA
*
69694277 CAAGGAGCAA
196 CAAGAAGCAA
* *
69694287 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTAAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
* * * *
69694352 TCTCTGTATTGTCAGAGAACAAATTGAAGTCTGGCATCTCCACTTCGATGGAGGGTAGACACATA
66 TCTCTGTATTGTCAGAGAACAAATTGAAGTCTAGCATCTCCACTTCGACGGAAGGCAGACACATA
* *
69694417 GCAGATCCAACCTTCAAATATTTATACTGAAGCAGATCTAAGATGGTTTGCCATCCTTGTGCTTA
131 GCAGATCCAACCTTCAAATATTTATACTGAAACAGATCCAAGATGGTTTGCCATCCTTGTGCTTA
69694482 CAAGAAGCAA
196 CAAGAAGCAA
* * * *
69694492 ATTGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCCAAGATAATTTGGCG
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
69694557 TCTCTGTA
66 TCTCTGTA
69694565 GCTGCGGAGA
Statistics
Matches: 256, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
205 256 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (205 bp):
ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAACAAATTGAAGTCTAGCATCTCCACTTCGACGGAAGGCAGACACATA
GCAGATCCAACCTTCAAATATTTATACTGAAACAGATCCAAGATGGTTTGCCATCCTTGTGCTTA
CAAGAAGCAA
Found at i:69694624 original size:44 final size:44
Alignment explanation
Indices: 69694576--69695340 Score: 646
Period size: 44 Copynumber: 17.4 Consensus size: 44
69694566 CTGCGGAGAG
* * *
69694576 CAGATTGAAGATTGCAGATTTGGCATCCCTGTGTTTATAGGGAA
1 CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * * * *
69694620 CAGATCGAAGATAGTAGATCTGACATTCCTGTGCTTACAGTGAAA
1 CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAG-GGAA
* ** *
69694665 CAGATCGAAAATTTCAGCA--TGGCATCCCTATGCTTATAGGGAA
1 CAGATCGAAGATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAA
* * *
69694708 CA-AGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CAGA-TCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * * *
69694752 CAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAA
1 CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
** **
69694796 GCAGATCGAA-ATTTCA-ACATGGCATCCCTGTGCTTATAGGGAA
1 -CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
* * *
69694839 CA-AGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CAGA-TCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * * *
69694883 CAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAA
1 CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
**
69694927 GCAGATCGAAGATTTCAGCA--TGGCATCCCTGTGCTTATAGGGAA
1 -CAGATCGAAGATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAA
*
69694971 CACG-TTGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CA-GATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * * * * *
69695015 CAGATTGAAGATAGTAGATCTGACATTCCTGTGCTTACAGTGAA
1 CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
** ** * *
69695059 GCAGATCGAAGATTTCA-ACATGGTATCCCTGTGTTTATAGGGAA
1 -CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
* * *
69695103 CA-AGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CAGA-TCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * * *
69695147 CAGATCGAAGGTAGCAGATCTGACATTCCTGTGCTTA-CGGTGAA
1 CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGG-GAA
* ** *
69695191 GTAGATCGAAGATTTCAGCA--TGGAATCCCTGTGCTTATAGGGAA
1 -CAGATCGAAGATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAA
* * * *
69695235 CA-AGTTGAAGATAGCAGATTCGGCATCCCTATGTTTATAGGGAA
1 CAGA-TCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * * *
69695279 CA-AGTTGAAGACAGCAGATTTGGCATCTCTGTGTTTATGGGGAA
1 CAGA-TCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
69695323 CAGATCGAAGA-AGCAGAT
1 CAGATCGAAGATAGCAGAT
69695341 CAAGAACTCA
Statistics
Matches: 573, Mismatches: 119, Indels: 59
0.76 0.16 0.08
Matches are distributed among these distances:
41 1 0.00
42 12 0.02
43 80 0.14
44 406 0.71
45 71 0.12
46 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (44 bp):
CAGATCGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
Found at i:69695311 original size:132 final size:132
Alignment explanation
Indices: 69694589--69695297 Score: 1170
Period size: 132 Copynumber: 5.4 Consensus size: 132
69694579 ATTGAAGATT
* *
69694589 GCAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGTAGATCTGACATTCCTGTGC
1 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
* * *
69694654 TTACAGTGAAACAGATCGAAAATTTCAGCATGGCATCCCTATGCTTATAGGGAACAAGTTGAAAA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
69694719 CA
131 CA
69694721 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
1 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
*
69694786 TTACAGTGAAGCAGATCGAA-ATTTCAACATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
69694850 CA
131 CA
69694852 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
1 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
* *
69694917 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACACGTTGAAGA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
*
69694982 TA
131 CA
* *
69694984 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATTGAAGATAGTAGATCTGACATTCCTGTGC
1 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
* * *
69695049 TTACAGTGAAGCAGATCGAAGATTTCAACATGGTATCCCTGTGTTTATAGGGAACAAGTTGAAAA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
69695114 CA
131 CA
*
69695116 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGGTAGCAGATCTGACATTCCTGTGC
1 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
* * * *
69695181 TTACGGTGAAGTAGATCGAAGATTTCAGCATGGAATCCCTGTGCTTATAGGGAACAAGTTGAAGA
66 TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
*
69695246 TA
131 CA
* * * * *
69695248 GCAGATTCGGCATCCCTATGTTTATAGGGAACA-AGTTGAAGACAGCAGAT
1 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGA-TCGAAGATAGCAGAT
69695298 TTGGCATCTC
Statistics
Matches: 542, Mismatches: 33, Indels: 4
0.94 0.06 0.01
Matches are distributed among these distances:
131 130 0.24
132 412 0.76
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (132 bp):
GCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGC
TTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
CA
Found at i:69695615 original size:13 final size:13
Alignment explanation
Indices: 69695597--69695681 Score: 87
Period size: 13 Copynumber: 7.2 Consensus size: 13
69695587 AAATATCTTT
69695597 ACTCCACTAAACC
1 ACTCCACTAAACC
69695610 ACT-C-C--AACC
1 ACTCCACTAAACC
69695619 ACTCCACTAAACC
1 ACTCCACTAAACC
*
69695632 TCT-C-C--AACC
1 ACTCCACTAAACC
*
69695641 ACTCTACTAAACC
1 ACTCCACTAAACC
*
69695654 ACTACACTAAACC
1 ACTCCACTAAACC
69695667 ACTCCACTAAACC
1 ACTCCACTAAACC
69695680 AC
1 AC
69695682 CCCAACTGTG
Statistics
Matches: 58, Mismatches: 6, Indels: 16
0.73 0.08 0.20
Matches are distributed among these distances:
9 13 0.22
10 1 0.02
11 4 0.07
12 2 0.03
13 38 0.66
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.16
Consensus pattern (13 bp):
ACTCCACTAAACC
Found at i:69695622 original size:22 final size:22
Alignment explanation
Indices: 69695597--69695687 Score: 119
Period size: 22 Copynumber: 4.0 Consensus size: 22
69695587 AAATATCTTT
69695597 ACTCCACTAAACCACTCCAACC
1 ACTCCACTAAACCACTCCAACC
*
69695619 ACTCCACTAAACCTCTCCAACC
1 ACTCCACTAAACCACTCCAACC
*
69695641 ACTCTACTAAACCACTACACTAAACC
1 ACTCCACTAAACCACT-C-C--AACC
*
69695667 ACTCCACTAAACCACCCCAAC
1 ACTCCACTAAACCACTCCAAC
69695688 TGTGACATCC
Statistics
Matches: 60, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
22 38 0.63
23 1 0.02
24 2 0.03
25 1 0.02
26 18 0.30
ACGTcount: A:0.37, C:0.47, G:0.00, T:0.15
Consensus pattern (22 bp):
ACTCCACTAAACCACTCCAACC
Found at i:69697518 original size:31 final size:29
Alignment explanation
Indices: 69697415--69697497 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
69697405 GTGACGAGAT
69697415 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
69697444 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
69697473 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
69697498 AAAATACGGC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:69697538 original size:60 final size:58
Alignment explanation
Indices: 69697411--69697547 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 58
69697401 TACGGTGACG
* * *
69697411 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
69697468 ATATATGGCACTAAGTGTGCATGCTGGAAAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGG--AAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
69697528 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
69697548 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
57 3 0.05
58 22 0.33
60 40 0.61
61 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:69705618 original size:31 final size:29
Alignment explanation
Indices: 69705515--69705597 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
69705505 GTGACGAGAT
69705515 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
69705544 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
69705573 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
69705598 AAAATACGGC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:69705638 original size:60 final size:58
Alignment explanation
Indices: 69705511--69705647 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 58
69705501 TACGGTGACG
* * *
69705511 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
69705568 ATATATGGCACTAAGTGTGCATGCTGGAAAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGG--AAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
69705628 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
69705648 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
57 3 0.05
58 22 0.33
60 40 0.61
61 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:69707524 original size:19 final size:18
Alignment explanation
Indices: 69707487--69707528 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
69707477 GGAGAGAGTG
*
69707487 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
69707505 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
69707524 TTATT
1 TTATT
69707529 ACTAATACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:69707587 original size:33 final size:39
Alignment explanation
Indices: 69707513--69707594 Score: 104
Period size: 33 Copynumber: 2.3 Consensus size: 39
69707503 TATTATTTTC
*
69707513 TATTATTATTATTATTACTAATACCACTATTATCATCAT
1 TATTACTATTATTATTACTAATACCACTATTATCATCAT
*
69707552 TATTACTATTA-TATTA-TAATA-C-CT-TT-TCATTAT
1 TATTACTATTATTATTACTAATACCACTATTATCATCAT
69707585 TATTACTATT
1 TATTACTATT
69707595 GTGTTTTTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 2 0.05
36 1 0.02
37 5 0.12
38 5 0.12
39 10 0.24
ACGTcount: A:0.34, C:0.13, G:0.00, T:0.52
Consensus pattern (39 bp):
TATTACTATTATTATTACTAATACCACTATTATCATCAT
Found at i:69707716 original size:17 final size:16
Alignment explanation
Indices: 69707685--69707728 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
69707675 TTAATAAATA
69707685 TATTTTTTAACATATT
1 TATTTTTTAACATATT
*
69707701 TATTTTATTTACATATCAT
1 TATTTT-TTAACATAT--T
69707720 TATTTTTTA
1 TATTTTTTA
69707729 TTATTATTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 6 0.26
17 8 0.35
18 2 0.09
19 7 0.30
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.64
Consensus pattern (16 bp):
TATTTTTTAACATATT
Found at i:69710991 original size:40 final size:40
Alignment explanation
Indices: 69710946--69711113 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
69710936 CGGAATATAA
*
69710946 CCGGATATAAGCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * *
69710986 CCGGATAGAATG-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
69711026 CCGGATAT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
69711066 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
69711106 CCGGATAT
1 CCGGATAT
69711114 CATTCAATTT
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 102 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69711096 original size:80 final size:80
Alignment explanation
Indices: 69710962--69711113 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
69710952 ATAAGCATGT
* *
69710962 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
69711027 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
69711042 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
69711105 CCCGGATAT
64 CCCGGATAT
69711114 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:69712788 original size:23 final size:23
Alignment explanation
Indices: 69712762--69712808 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
69712752 CATCCCGACT
69712762 AGGGTCAATTTTG-GGCTGTCACA
1 AGGGTC-ATTTTGAGGCTGTCACA
*
69712785 AGGGTCGTTTTGAGGCTGTCACA
1 AGGGTCATTTTGAGGCTGTCACA
69712808 A
1 A
69712809 TTCACGTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.30
Consensus pattern (23 bp):
AGGGTCATTTTGAGGCTGTCACA
Found at i:69716191 original size:15 final size:15
Alignment explanation
Indices: 69716152--69716231 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
69716142 GTATCTTGGG
*
69716152 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
69716167 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
69716182 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
69716197 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
69716212 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
69716226 TTTCTT
1 TTTCTT
69716232 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:69716221 original size:30 final size:30
Alignment explanation
Indices: 69716143--69716230 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
69716133 CATAGTATCG
* * *
69716143 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
69716173 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
69716203 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
69716231 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:69723810 original size:41 final size:43
Alignment explanation
Indices: 69723711--69723857 Score: 113
Period size: 41 Copynumber: 3.4 Consensus size: 43
69723701 CAATGCAAAC
* * * * *
69723711 GTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCACT
1 GTCCCAGACATGGTCTTAAATGTAATCAAATATCAATGCCACG
* *
69723754 GTCCCAGATAGGGTCTTAAATG-AATCAAATA-CAATGCCGA-G
1 GTCCCAGACATGGTCTTAAATGTAATCAAATATCAATGCC-ACG
* * * *
69723795 GTCCCAGACATGGTCTTACACGTAAGCATATATATCGATGCCAAC-
1 GTCCCAGACATGGTCTTAAATGTAATCA-A-ATATCAATGCC-ACG
**
69723840 GTCCCAGATGTGGTCTTA
1 GTCCCAGACATGGTCTTA
69723858 CACGAGAACA
Statistics
Matches: 82, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
41 24 0.29
42 13 0.16
43 19 0.23
44 3 0.04
45 23 0.28
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.26
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTAAATGTAATCAAATATCAATGCCACG
Found at i:69730452 original size:21 final size:21
Alignment explanation
Indices: 69730428--69730469 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
69730418 TGATATTCTC
*
69730428 AACTTAGTCATTTAGCATTCA
1 AACTTAGTCATCTAGCATTCA
69730449 AACTTAGTCATCTAGCATTCA
1 AACTTAGTCATCTAGCATTCA
69730470 TAGTCATGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (21 bp):
AACTTAGTCATCTAGCATTCA
Found at i:69732098 original size:48 final size:47
Alignment explanation
Indices: 69732058--69732339 Score: 314
Period size: 48 Copynumber: 5.9 Consensus size: 47
69732048 CACGAAGTCT
* *
69732058 CATATCAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACA
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACAC-GGCACA
*
69732106 CATATC-ATCCCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
1 CATATCAAT-GCCGATGCCATGTCCCAGACATGGTCTTACAC-GGCACA
** * *
69732154 CATATCAACCCCGATGCCATGTCCTAGACATGGTCTTACATTGGCACA
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACA-CGGCACA
* * * *
69732202 CATATCAATGTCGATGTCATGTCCTAGACATGGTCTTACATTGGCACA
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACA-CGGCACA
* * * * *
69732250 CATATCAACGCTGATGCCATGTCGCAGACATGGTCTTACACTGGCTCT
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACAC-GGCACA
* * * *
69732298 CATCTCGGATGCCGATGCCATGTCCTAGTCATGGTCTTACAC
1 CATATC-AATGCCGATGCCATGTCCCAGACATGGTCTTACAC
69732340 AGGATCTCAT
Statistics
Matches: 203, Mismatches: 26, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
47 1 0.00
48 172 0.85
49 30 0.15
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACGGCACA
Found at i:69732168 original size:96 final size:96
Alignment explanation
Indices: 69732068--69732339 Score: 375
Period size: 96 Copynumber: 2.8 Consensus size: 96
69732058 CATATCAGTG
* * *
69732068 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATC-ATCCCCGATGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCGAT-GCCGATGCCATGTCCTA
69732132 GACATGGTCTTACACTGGCACACATATCAACC
65 GACATGGTCTTACACTGGCACACATATCAACC
* * * * *
69732164 CCGATGCCATGTCCTAGACATGGTCTTACATTGGCACACATATCAATGTCGATGTCATGTCCTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCGATGCCGATGCCATGTCCTAG
* *
69732229 ACATGGTCTTACATTGGCACACATATCAACG
66 ACATGGTCTTACACTGGCACACATATCAACC
* * * * *
69732260 CTGATGCCATGTCGCAGACATGGTCTTACACTGGCTCTCATCTCGGATGCCGATGCCATGTCCTA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATC-GATGCCGATGCCATGTCCTA
*
69732325 GTCATGGTCTTACAC
65 GACATGGTCTTACAC
69732340 AGGATCTCAT
Statistics
Matches: 153, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
96 121 0.79
97 32 0.21
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (96 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCGATGCCGATGCCATGTCCTAG
ACATGGTCTTACACTGGCACACATATCAACC
Found at i:69732239 original size:144 final size:145
Alignment explanation
Indices: 69732058--69732338 Score: 402
Period size: 144 Copynumber: 1.9 Consensus size: 145
69732048 CACGAAGTCT
* *
69732058 CATATCAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCATCCCCGATGC
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACCCCGATGC
69732123 CATGTCCCAGACATGGTCTTACACTGGCACACATATC-AACCCCGATGCCATGTCCTAGACATGG
66 CATGTCCCAGACATGGTCTTACACTGGCACACATATCGAACCCCGATGCCATGTCCTAGACATGG
69732187 TCTTACATTGGCACA
131 TCTTACATTGGCACA
* * * * * * *
69732202 CATATCAATGTCGATGTCATGTCCTAGACATGGTCTTACATTGGCACACATATCAACGCTGATGC
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACCCCGATGC
* * * * * ** *
69732267 CATGTCGCAGACATGGTCTTACACTGGCTCTCATCTCGGATGCCGATGCCATGTCCTAGTCATGG
66 CATGTCCCAGACATGGTCTTACACTGGCACACATATCGAACCCCGATGCCATGTCCTAGACATGG
69732332 TCTTACA
131 TCTTACA
69732339 CAGGATCTCA
Statistics
Matches: 119, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
144 89 0.75
145 30 0.25
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (145 bp):
CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACCCCGATGC
CATGTCCCAGACATGGTCTTACACTGGCACACATATCGAACCCCGATGCCATGTCCTAGACATGG
TCTTACATTGGCACA
Found at i:69734795 original size:40 final size:40
Alignment explanation
Indices: 69734728--69734899 Score: 224
Period size: 40 Copynumber: 4.3 Consensus size: 40
69734718 ACCCAAGTAT
*
69734728 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
69734767 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
69734807 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * *
69734847 CTTCGGGACATAGCCCGGATATAGCAACTCGGACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
69734887 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
69734900 TCTGGTTATC
Statistics
Matches: 115, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 99 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:69741879 original size:39 final size:40
Alignment explanation
Indices: 69741826--69741960 Score: 177
Period size: 40 Copynumber: 3.4 Consensus size: 40
69741816 ACCCAAGTAT
*
69741826 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGT
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
*
69741865 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
69741905 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACAAATGC
* *
69741945 CTTCGGGACATAGCCC
1 CTTCGGGTCTTAGCCC
69741961 AAGTATCTTC
Statistics
Matches: 86, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 11 0.13
40 73 0.85
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:69742004 original size:61 final size:62
Alignment explanation
Indices: 69741905--69742021 Score: 159
Period size: 61 Copynumber: 1.9 Consensus size: 62
69741895 GCACAAATGC
*
69741905 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCAAGTAT
1 CTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACATAGCCCAAGTAT
* * *
69741967 CTTCGGGAT-TTAG-CCGGATATAA-CAACTTGCACAAATGCCTTCGGGTCTTAGCCC
1 CTTCGGG-TCTTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGACATAGCCC
69742022 GGATATAATC
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
60 1 0.02
61 36 0.73
62 11 0.22
63 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (62 bp):
CTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACATAGCCCAAGTAT
Found at i:69742040 original size:101 final size:102
Alignment explanation
Indices: 69741864--69742059 Score: 351
Period size: 101 Copynumber: 1.9 Consensus size: 102
69741854 CGCACAAATG
*
69741864 TCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
1 TCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
69741929 TCACTAGCATAAATGCCTTCGGGACATAGCCCAAGTA
66 TCACTAGCATAAATGCCTTCGGGACATAGCCCAAGTA
*
69741966 TCTTCGGGAT-TTAG-CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 TCTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
69742029 ATCACTAGCATAAATGCCTTCGGGACATAGC
65 ATCACTAGCATAAATGCCTTCGGGACATAGC
69742060 TCGGATATAG
Statistics
Matches: 91, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
101 78 0.86
102 12 0.13
103 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (102 bp):
TCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
TCACTAGCATAAATGCCTTCGGGACATAGCCCAAGTA
Found at i:69742044 original size:40 final size:40
Alignment explanation
Indices: 69741967--69742103 Score: 136
Period size: 40 Copynumber: 3.5 Consensus size: 40
69741957 GCCCAAGTAT
*
69741967 CTTCGGGAT-TTAG-CCGGATATAACAACTTGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTAGCACAAATGC
*
69742006 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTAGCACAAATGC
* * * * * * *
69742046 CTTCGGGACATAGCTCGGATATAGCAACTCGTACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAATGC
* *
69742086 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
69742104 TTATCATCCG
Statistics
Matches: 79, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
38 1 0.01
39 12 0.15
40 65 0.82
41 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAATGC
Found at i:69742085 original size:141 final size:141
Alignment explanation
Indices: 69741817--69742091 Score: 401
Period size: 141 Copynumber: 2.0 Consensus size: 141
69741807 CACTTCCAAA
*
69741817 CCCAAGTATCTTCGGGATTTAGCCGGATATAACAACTCGCACAAATGTCTTCGGGTCTTAGCCCG
1 CCCAAGTATCTTCGGGATTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
* * * * *
69741882 GATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCT
66 GATATAGCAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAAGCACTAGCACAAATGCCT
69741947 TCGGGACATAG
131 TCGGGACATAG
*
69741958 CCCAAGTATCTTCGGGATTTAGCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGCCCG
1 CCCAAGTATCTTCGGGATTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
* * * * * *
69742023 GATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCTCGGATAT-AGCAACTCGTACGAATGC
66 GATAT-AGCAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAAGC-ACTAGCACAAATGC
69742086 CTTCGG
129 CTTCGG
69742092 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 13, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
140 2 0.02
141 115 0.97
142 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (141 bp):
CCCAAGTATCTTCGGGATTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCG
GATATAGCAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAAGCACTAGCACAAATGCCT
TCGGGACATAG
Done.