Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 225 of 325
Found at i:70012497 original size:21 final size:21
Alignment explanation
Indices: 70012456--70012497 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
70012446 TCCTTTTCTT
* *
70012456 TTTCTTTCCCTTTTTTCTTTC
1 TTTCTTTCCCTATTCTCTTTC
*
70012477 TTTCTTTCCCTATTCTGTTTC
1 TTTCTTTCCCTATTCTCTTTC
70012498 GTTTTTCATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.02, C:0.29, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTCTTTCCCTATTCTCTTTC
Found at i:70012516 original size:13 final size:13
Alignment explanation
Indices: 70012506--70012557 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
70012496 TCGTTTTTCA
*
70012506 TTCTTTCTTTTAT
1 TTCTTTATTTTAT
70012519 TTCTTTATTTTAT
1 TTCTTTATTTTAT
*
70012532 TTCTTT-TATTCA-
1 TTCTTTAT-TTTAT
70012544 TTCTTTATTTTAT
1 TTCTTTATTTTAT
70012557 T
1 T
70012558 ATATTATTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
12 10 0.30
13 23 0.70
ACGTcount: A:0.13, C:0.12, G:0.00, T:0.75
Consensus pattern (13 bp):
TTCTTTATTTTAT
Found at i:70012564 original size:8 final size:8
Alignment explanation
Indices: 70012548--70012580 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
70012538 TATTCATTCT
*
70012548 TTATTTTA
1 TTATATTA
70012556 TTATATTA
1 TTATATTA
70012564 TTATATTA
1 TTATATTA
70012572 TTATATTA
1 TTATATTA
70012580 T
1 T
70012581 ATTTAGTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (8 bp):
TTATATTA
Found at i:70012565 original size:38 final size:37
Alignment explanation
Indices: 70012494--70012570 Score: 93
Period size: 38 Copynumber: 2.1 Consensus size: 37
70012484 CCCTATTCTG
* * *
70012494 TTTCGTTTTTCATTCTTTCTTTTATTTCTTTATTTTA
1 TTTCGTTTTTCATTCTTTATTTTATTTCATTATTATA
*
70012531 TTTCTTTTATTCATTCTTTATTTTATTAT-ATTATTATA
1 TTTCGTTT-TTCATTCTTTATTTTATT-TCATTATTATA
70012569 TT
1 TT
70012571 ATTATATTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
37 7 0.21
38 26 0.76
39 1 0.03
ACGTcount: A:0.17, C:0.10, G:0.01, T:0.71
Consensus pattern (37 bp):
TTTCGTTTTTCATTCTTTATTTTATTTCATTATTATA
Found at i:70015046 original size:2 final size:2
Alignment explanation
Indices: 70015039--70015068 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
70015029 GCCCTTGCAC
70015039 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70015069 GTTTGCACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:70015840 original size:40 final size:40
Alignment explanation
Indices: 70015783--70016008 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
70015773 TCGAATGATG
*
70015783 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTGACTAAA
* * *
70015823 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTGACTAAA
* * *
70015863 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAAA
* * * * *
70015903 TCCGGGTTAAGTCCCGAAGGCATTTGTTCGACTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAAA
* * * *
70015943 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTA-AA
* *
70015984 -CCGGGCCATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70016009 AATGAGTAGC
Statistics
Matches: 167, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 156 0.93
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAAA
Found at i:70015920 original size:80 final size:80
Alignment explanation
Indices: 70015783--70016008 Score: 305
Period size: 80 Copynumber: 2.8 Consensus size: 80
70015773 TCGAATGATG
* * * * *
70015783 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
*
70015846 TTGTGCGAGTTACTAAA
64 TTGTGCGACTTACTAAA
*
70015863 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
70015928 GTTCGACTTACTAAA
66 GTGCGACTTACTAAA
* * *
70015943 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAA-CCGGGCCATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
70016007 TG
65 TG
70016009 AATGAGTAGC
Statistics
Matches: 131, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 1 0.01
80 121 0.92
81 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGACTTACTAAA
Found at i:70015997 original size:120 final size:120
Alignment explanation
Indices: 70015783--70016008 Score: 296
Period size: 120 Copynumber: 1.9 Consensus size: 120
70015773 TCGAATGATG
* * *
70015783 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAACTGACTAAATCCGGACTAAGATCCGAAGGCATTG
**
70015848 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGTTACTAAATCCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * * **
70015903 TCCGGGTTAAGTCCCGAAGGCATTTGTTC-GACTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAACTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
*
70015966 TGGTGCGAGTTACTATAA-CCGGGCCATGTCCCGAAGGCATTTG
64 TGGTGCGAGTTACTA-AATCCGGGCCAAGTCCCGAAGGCATTTG
70016009 AATGAGTAGC
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
119 1 0.01
120 82 0.90
121 8 0.09
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAACTGACTAAATCCGGACTAAGATCCGAAGGCATTG
GTGCGAGTTACTAAATCCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70016970 original size:110 final size:110
Alignment explanation
Indices: 70016777--70016996 Score: 431
Period size: 110 Copynumber: 2.0 Consensus size: 110
70016767 ATGTGAAAAA
70016777 TCACTAAAAATAGTAGGAATGGAATTAAATAGTGAATAAATTATGTAAACGAACCTTGACGAGTC
1 TCACTAAAAATAGTAGGAATGGAATTAAATAGTGAATAAATTATGTAAACGAACCTTGACGAGTC
70016842 TATTTTCATAGGGAAGTAACGAAACAATCATATGAACAGTATGTT
66 TATTTTCATAGGGAAGTAACGAAACAATCATATGAACAGTATGTT
70016887 TCACTAAAAATAGTAGGAATGGAATTAAATAGTGAATAAATTATGTAAACGAACCTTGACGAGTC
1 TCACTAAAAATAGTAGGAATGGAATTAAATAGTGAATAAATTATGTAAACGAACCTTGACGAGTC
*
70016952 TATTTTCATAGGGAAGTAACGAAACGATCATATGAACAGTATGTT
66 TATTTTCATAGGGAAGTAACGAAACAATCATATGAACAGTATGTT
70016997 AAGAGATATT
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 109 1.00
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (110 bp):
TCACTAAAAATAGTAGGAATGGAATTAAATAGTGAATAAATTATGTAAACGAACCTTGACGAGTC
TATTTTCATAGGGAAGTAACGAAACAATCATATGAACAGTATGTT
Found at i:70025903 original size:25 final size:26
Alignment explanation
Indices: 70025852--70025903 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
70025842 TCTACACCTA
*
70025852 AGGGTATTTTGGTCATTTTTTCCCTT
1 AGGGTATTTTGGTCATATTTTCCCTT
70025878 AGGGTCATTTTGGT-A-ATTTTCCCTT
1 AGGGT-ATTTTGGTCATATTTTCCCTT
70025903 A
1 A
70025904 ATTACGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 10 0.42
26 6 0.25
27 8 0.33
ACGTcount: A:0.15, C:0.15, G:0.19, T:0.50
Consensus pattern (26 bp):
AGGGTATTTTGGTCATATTTTCCCTT
Found at i:70026229 original size:28 final size:29
Alignment explanation
Indices: 70026187--70026300 Score: 130
Period size: 29 Copynumber: 4.0 Consensus size: 29
70026177 TACCTGTATC
* *
70026187 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
70026215 TGGCCCATTAGGCCCAAATCA-ACTGT-ATA
1 TGGCCCATTAGGCCCAAATCACA-T-TCATA
*
70026244 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
70026273 TGG-CCAGTTAGGCCC-AGTCACATTCATA
1 TGGCCCA-TTAGGCCCAAATCACATTCATA
70026301 ATCATGCTCA
Statistics
Matches: 77, Mismatches: 3, Indels: 12
0.84 0.03 0.13
Matches are distributed among these distances:
28 30 0.39
29 45 0.58
30 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:70026288 original size:58 final size:57
Alignment explanation
Indices: 70026180--70026288 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 57
70026170 TTTCACATAC
* *
70026180 CTGTATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATCAA
1 CTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCAA
* *
70026237 CTGTATATGGCCCATTAGGCCCAAATCACATTTATATGG-CCAGTTAGGCCCA
1 CTGTATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCA-TTAGGCCCA
70026289 GTCACATTCA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
57 23 0.50
58 23 0.50
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (57 bp):
CTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCAA
Found at i:70038462 original size:30 final size:30
Alignment explanation
Indices: 70038426--70038485 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
70038416 TTTAACAGCC
70038426 TGATCCATCAACATTATCACAAATTGAGCT
1 TGATCCATCAACATTATCACAAATTGAGCT
* *
70038456 TGATCCATCAATATTATCAGAAATTGAGCT
1 TGATCCATCAACATTATCACAAATTGAGCT
70038486 CTTTCTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.32
Consensus pattern (30 bp):
TGATCCATCAACATTATCACAAATTGAGCT
Found at i:70043040 original size:24 final size:24
Alignment explanation
Indices: 70043013--70043170 Score: 237
Period size: 24 Copynumber: 6.6 Consensus size: 24
70043003 CTTATTATGT
* * *
70043013 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
70043037 TCGCACACGTAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
70043061 TCGCACACTTAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
70043085 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
70043109 TCGCACACATAGTGCCATAGT-AA
1 TCGCACACATAGTGCCATAGTAAA
*
70043132 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
70043156 TCGCACACATAGTGC
1 TCGCACACATAGTGC
70043171 ATTTGAGATA
Statistics
Matches: 126, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
23 23 0.18
24 103 0.82
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:70043050 original size:48 final size:46
Alignment explanation
Indices: 70042991--70043170 Score: 177
Period size: 48 Copynumber: 3.8 Consensus size: 46
70042981 ACCGAATGTG
* * *
70042991 GCACACATAGTGCTTATTATGTTCGCACACATAGAGCTATAGCAAATC
1 GCACACATAGTGCTTA-TATGATCGCACACATAGTGCCATAG-AAATC
* * *
70043039 GCACACGTAGTGC-TATAGTAAATCGCACACTTAGTGCCATAGTAAATC
1 GCACACATAGTGCTTATA-T-GATCGCACACATAGTGCCATAG-AAATC
* *
70043087 GCACACATAGTGC-CATAGTGAATCGCACACATAGTGCCATAGTAATC
1 GCACACATAGTGCTTATA-TG-ATCGCACACATAGTGCCATAGAAATC
*
70043134 GCACACATAGTGC-CATAGTGAATCGCACACATAGTGC
1 GCACACATAGTGCTTATA-TG-ATCGCACACATAGTGC
70043171 ATTTGAGATA
Statistics
Matches: 117, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
46 2 0.02
47 44 0.38
48 71 0.61
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.23
Consensus pattern (46 bp):
GCACACATAGTGCTTATATGATCGCACACATAGTGCCATAGAAATC
Found at i:70050731 original size:24 final size:24
Alignment explanation
Indices: 70050704--70050862 Score: 237
Period size: 24 Copynumber: 6.6 Consensus size: 24
70050694 CTTATTATGT
* * *
70050704 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
70050728 TCGCACACGTAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
70050752 TCGCACACTTAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
70050776 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
70050800 TCGCACACATAGTGCCATAGTAAG
1 TCGCACACATAGTGCCATAGTAAA
*
70050824 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
70050848 TCGCACACATAGTGC
1 TCGCACACATAGTGC
70050863 ATTTGAGATA
Statistics
Matches: 124, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 124 1.00
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:70050741 original size:48 final size:47
Alignment explanation
Indices: 70050682--70050862 Score: 188
Period size: 48 Copynumber: 3.8 Consensus size: 47
70050672 ACCGAATGTG
* * * *
70050682 GCACACATAGTGCTTATTATGTTCGCACACATAGAGCTATAGCAAATC
1 GCACACATAGTGCTTA-TATGATCGCACACATAGTGCCATAGTAAATC
* * *
70050730 GCACACGTAGTGC-TATAGTAAATCGCACACTTAGTGCCATAGTAAATC
1 GCACACATAGTGCTTATA-T-GATCGCACACATAGTGCCATAGTAAATC
* *
70050778 GCACACATAGTGC-CATAGTGAATCGCACACATAGTGCCATAGTAAGTC
1 GCACACATAGTGCTTATA-TG-ATCGCACACATAGTGCCATAGTAAATC
*
70050826 GCACACATAGTGC-CATAGTGAATCGCACACATAGTGC
1 GCACACATAGTGCTTATA-TG-ATCGCACACATAGTGC
70050863 ATTTGAGATA
Statistics
Matches: 118, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
46 2 0.02
47 3 0.03
48 113 0.96
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.23
Consensus pattern (47 bp):
GCACACATAGTGCTTATATGATCGCACACATAGTGCCATAGTAAATC
Found at i:70054209 original size:43 final size:43
Alignment explanation
Indices: 70054039--70054210 Score: 163
Period size: 43 Copynumber: 4.0 Consensus size: 43
70054029 CATAGGATTC
*
70054039 CGATATGTG-TTATCATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGATATTTGATTA-CATGTAAGACCACGTCTAGGACGTTGGCAT
* * *
70054082 CGACT-TCTGACTTACGTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGA-TATTTGA-TTACATGTAAGACCACGTCTAGGACGTTGGCAT
* * * * **
70054126 CG-TATTTGATTTCTTGCAAAACC-CTGTCTAGGACAATGGCAT
1 CGATATTTGATTACATGTAAGACCAC-GTCTAGGACGTTGGCAT
* * *
70054168 CGATATTTGATTACATGTAAGACCACATCTGGGAGGTTGGCAT
1 CGATATTTGATTACATGTAAGACCACGTCTAGGACGTTGGCAT
70054211 TGTACGAGCT
Statistics
Matches: 102, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
41 1 0.01
42 27 0.26
43 39 0.38
44 32 0.31
45 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.30
Consensus pattern (43 bp):
CGATATTTGATTACATGTAAGACCACGTCTAGGACGTTGGCAT
Found at i:70054224 original size:85 final size:86
Alignment explanation
Indices: 70054065--70054224 Score: 198
Period size: 85 Copynumber: 1.9 Consensus size: 86
70054055 GTAAGACCAC
** * *
70054065 GTCTAGGACGTTGGCATCGACTTCTGACTTACGTGTAAGACCACGTCTGGGACGTTGGCATCGTA
1 GTCTAGGACAATGGCATCGACTTCTGACTTACATGTAAGACCACATCTGGGACGTTGGCATCGTA
***
70054130 TTTGATTTCTTGCAAAACCCT
66 CGAGATTTCTTGCAAAACCCT
* * *
70054151 GTCTAGGACAATGGCATCGA-TATTTGA-TTACATGTAAGACCACATCTGGGAGGTTGGCATTGT
1 GTCTAGGACAATGGCATCGACT-TCTGACTTACATGTAAGACCACATCTGGGACGTTGGCATCGT
*
70054214 ACGAGCTTTCT
65 ACGAGATTTCT
70054225 GAGCTATCCG
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
85 40 0.65
86 22 0.35
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (86 bp):
GTCTAGGACAATGGCATCGACTTCTGACTTACATGTAAGACCACATCTGGGACGTTGGCATCGTA
CGAGATTTCTTGCAAAACCCT
Found at i:70058604 original size:40 final size:40
Alignment explanation
Indices: 70058542--70058798 Score: 205
Period size: 40 Copynumber: 6.5 Consensus size: 40
70058532 CGGATGATAA
70058542 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGT-GCTAATAT
* * *
70058582 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TGCTAATAT
* * *
70058622 CCGGGCTAAGTCTCGAAGGCGTTT--G-TACGAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTA-GTGCTA--ATAT
* * *
70058662 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGCTAATAT
* * * *
70058700 ACCGGGCTAAGTCCCGAAGGCACTTGTGCAAGT--TACCATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGCTA--ATAT
70058741 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGT-GCTAATAT
**
70058781 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70058799 TACTTGGTTT
Statistics
Matches: 177, Mismatches: 24, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
37 3 0.02
38 5 0.03
39 48 0.27
40 112 0.63
41 5 0.03
42 2 0.01
43 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGCTAATAT
Found at i:70058750 original size:79 final size:80
Alignment explanation
Indices: 70058582--70058804 Score: 254
Period size: 79 Copynumber: 2.8 Consensus size: 80
70058572 GTGGCTAATT
* * **
70058582 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGCTACTATATCCGGGCTAAGTCTCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCACTTG
* ** *
70058647 TACGAGCTATTATAT
66 TACAAGCTACCATAA
* * *
70058662 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCACTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCACTTG
* *
70058726 TGCAAGTTACCATAA
66 TACAAGCTACCATAA
* * ** *
70058741 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TGGCTATATCC-GGCTAAACCCCGAAGGTACTT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGCT-ACTATATCCGGGCTAAGTCCCGAAGGCACTT
70058804 G
65 G
70058805 GTTTGAGAAC
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
78 1 0.01
79 83 0.69
80 37 0.31
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCACTTG
TACAAGCTACCATAA
Found at i:70058784 original size:119 final size:120
Alignment explanation
Indices: 70058542--70058765 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
70058532 CGGATGATAA
* * *
70058542 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAG-GCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTC
* * * * * *
70058606 GAGCGAGCTACTATATCCGGGCTAAGTCTCGAAGGCGTTTGTACGAGCTATTATAT
65 GAGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATAT
* * *
70058662 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-TATTATACCGGGCTAAGTCCCGAAGGCACTT-
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCA-TTC
* *
70058725 GTGCAAGTTACCATAACCGGGCTAAGTCCCGAAGGCATTTG
65 GAGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTTG
70058766 AGCTAGTGGC
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 58 0.65
120 29 0.33
121 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
AGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATAT
Found at i:70063920 original size:13 final size:13
Alignment explanation
Indices: 70063902--70063934 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
70063892 AGTATGTGTG
70063902 AAAATTTTGTACA
1 AAAATTTTGTACA
70063915 AAAATTTTGTACA
1 AAAATTTTGTACA
70063928 AAAATTT
1 AAAATTT
70063935 GATCGTTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (13 bp):
AAAATTTTGTACA
Found at i:70064742 original size:21 final size:21
Alignment explanation
Indices: 70064705--70064747 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
70064695 GATTTGAATG
*
70064705 AATTTGAAAGTGAATAAGTTA
1 AATTTGAAAGTGAATAAATTA
*
70064726 AATTTG-AATTGATATAAATTA
1 AATTTGAAAGTGA-ATAAATTA
70064747 A
1 A
70064748 GAACCAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (21 bp):
AATTTGAAAGTGAATAAATTA
Found at i:70065505 original size:14 final size:13
Alignment explanation
Indices: 70065482--70065513 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
70065472 GGAATATCAA
70065482 AACAATAATTAAG
1 AACAATAATTAAG
70065495 AACACATAATTAAG
1 AACA-ATAATTAAG
70065509 AACAA
1 AACAA
70065514 GTCAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:70065885 original size:13 final size:13
Alignment explanation
Indices: 70065867--70065893 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70065857 ACTCGGCAGG
70065867 GACACGCTCGTGT
1 GACACGCTCGTGT
70065880 GACACGCTCGTGT
1 GACACGCTCGTGT
70065893 G
1 G
70065894 CATCGTGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.22
Consensus pattern (13 bp):
GACACGCTCGTGT
Found at i:70066234 original size:40 final size:40
Alignment explanation
Indices: 70066174--70066253 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
70066164 ACTTAAGCAT
70066174 TTGCTTGTCCTCAAGAAAAAATCCTCAACTCATAATCAAA
1 TTGCTTGTCCTCAAGAAAAAATCCTCAACTCATAATCAAA
* *
70066214 TTGCTTGTCCTCAAGCAAAAATCCTCAACTCGTAATCAAA
1 TTGCTTGTCCTCAAGAAAAAATCCTCAACTCATAATCAAA
70066254 ATAAATTCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.38, C:0.26, G:0.09, T:0.28
Consensus pattern (40 bp):
TTGCTTGTCCTCAAGAAAAAATCCTCAACTCATAATCAAA
Found at i:70071855 original size:18 final size:18
Alignment explanation
Indices: 70071832--70071875 Score: 72
Period size: 17 Copynumber: 2.5 Consensus size: 18
70071822 TATTGATATA
70071832 AGGATTGTTTTGAGATCG
1 AGGATTGTTTTGAGATCG
70071850 AGGATTG-TTTGAGATCG
1 AGGATTGTTTTGAGATCG
*
70071867 AGGACTGTT
1 AGGATTGTT
70071876 ACCCATGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 16 0.67
18 8 0.33
ACGTcount: A:0.23, C:0.07, G:0.34, T:0.36
Consensus pattern (18 bp):
AGGATTGTTTTGAGATCG
Found at i:70072993 original size:19 final size:19
Alignment explanation
Indices: 70072956--70072993 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
70072946 ACCTGTCAGA
*
70072956 AGAAAAAAAATGAAGAATT
1 AGAAAAAAAATGAAAAATT
70072975 AGAAAAGAAAAT-AAAAATT
1 AGAAAA-AAAATGAAAAATT
70072994 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.71, C:0.00, G:0.13, T:0.16
Consensus pattern (19 bp):
AGAAAAAAAATGAAAAATT
Found at i:70076737 original size:14 final size:14
Alignment explanation
Indices: 70076709--70076766 Score: 66
Period size: 14 Copynumber: 4.1 Consensus size: 14
70076699 TTTTTTTTAG
70076709 TTATTTTACTT-AAT
1 TTATTTTA-TTCAAT
70076723 TTATTTTATTCAAT
1 TTATTTTATTCAAT
*
70076737 TACATTTT-TTACAAT
1 T-TATTTTATT-CAAT
70076752 TTATTTTATTCAAT
1 TTATTTTATTCAAT
70076766 T
1 T
70076767 ACATTTTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
13 2 0.05
14 24 0.63
15 12 0.32
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (14 bp):
TTATTTTATTCAAT
Found at i:70076751 original size:15 final size:15
Alignment explanation
Indices: 70076733--70076777 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
70076723 TTATTTTATT
70076733 CAATTACATTTTTTA
1 CAATTACATTTTTTA
*
70076748 CAATT-TATTTTATT-
1 CAATTACATTTT-TTA
70076762 CAATTACATTTTTTA
1 CAATTACATTTTTTA
70076777 C
1 C
70076778 CTTAACCTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.31, C:0.13, G:0.00, T:0.56
Consensus pattern (15 bp):
CAATTACATTTTTTA
Found at i:70076777 original size:29 final size:29
Alignment explanation
Indices: 70076720--70076777 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
70076710 TATTTTACTT
70076720 AATTTATTTTATTCAATTACATTTTTTAC
1 AATTTATTTTATTCAATTACATTTTTTAC
70076749 AATTTATTTTATTCAATTACATTTTTTAC
1 AATTTATTTTATTCAATTACATTTTTTAC
70076778 CTTAACCTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.59
Consensus pattern (29 bp):
AATTTATTTTATTCAATTACATTTTTTAC
Found at i:70081650 original size:15 final size:15
Alignment explanation
Indices: 70081620--70081669 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
70081610 CAAAGATAAC
*
70081620 AAGAAAACCA-AATA
1 AAGAAATCCAGAATA
70081634 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
70081649 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
70081664 AAGAAA
1 AAGAAA
70081670 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 9 0.29
15 22 0.71
ACGTcount: A:0.62, C:0.12, G:0.16, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:70081678 original size:15 final size:15
Alignment explanation
Indices: 70081620--70081678 Score: 59
Period size: 15 Copynumber: 4.0 Consensus size: 15
70081610 CAAAGATAAC
*
70081620 AAGAAAACCAA-ATA
1 AAGAAATCCAAGATA
70081634 AAGAAATCC-AGAATA
1 AAGAAATCCAAG-ATA
* *
70081649 AAGAGATCCAGGATA
1 AAGAAATCCAAGATA
*
70081664 AAGAAACCCAAGATA
1 AAGAAATCCAAGATA
70081679 CGATACTATG
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
13 1 0.03
14 8 0.22
15 26 0.72
16 1 0.03
ACGTcount: A:0.59, C:0.15, G:0.15, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:70088935 original size:39 final size:39
Alignment explanation
Indices: 70088887--70088965 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
70088877 GAAAAATCTC
70088887 TAATAAACCATTGGTAAAACCCCCGCATGTCCTAAAAAA
1 TAATAAACCATTGGTAAAACCCCCGCATGTCCTAAAAAA
70088926 TAATAAACCATTGGTAAAACCCCCGCATGTCCTAAAAAA
1 TAATAAACCATTGGTAAAACCCCCGCATGTCCTAAAAAA
70088965 T
1 T
70088966 TGCGAATACC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.43, C:0.25, G:0.10, T:0.22
Consensus pattern (39 bp):
TAATAAACCATTGGTAAAACCCCCGCATGTCCTAAAAAA
Found at i:70091546 original size:33 final size:33
Alignment explanation
Indices: 70091504--70091606 Score: 197
Period size: 33 Copynumber: 3.1 Consensus size: 33
70091494 CGTGCAAAGT
70091504 TGTTGTAAGAATTTCCATAAGAATTGTTACAAA
1 TGTTGTAAGAATTTCCATAAGAATTGTTACAAA
70091537 TGTTGTAAGAATTTCCATAAGAATTGTTACAAA
1 TGTTGTAAGAATTTCCATAAGAATTGTTACAAA
*
70091570 TGTTGTAAGAATTTCCATAAGAATTGTTGCAAA
1 TGTTGTAAGAATTTCCATAAGAATTGTTACAAA
70091603 TGTT
1 TGTT
70091607 ACTAAACAGA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
33 69 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.38
Consensus pattern (33 bp):
TGTTGTAAGAATTTCCATAAGAATTGTTACAAA
Found at i:70097593 original size:15 final size:17
Alignment explanation
Indices: 70097563--70097594 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
70097553 TTGATACTTG
70097563 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
70097580 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
70097595 AAATTATGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:70106196 original size:19 final size:19
Alignment explanation
Indices: 70106172--70106211 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
70106162 TTTATTTTAC
70106172 TTAGTTAAAAATCCTAGTT
1 TTAGTTAAAAATCCTAGTT
70106191 TTAGTTAAAAATCCTAGTT
1 TTAGTTAAAAATCCTAGTT
70106210 TT
1 TT
70106212 CAATCACCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (19 bp):
TTAGTTAAAAATCCTAGTT
Found at i:70110412 original size:16 final size:16
Alignment explanation
Indices: 70110391--70110421 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70110381 TTTTATTTGG
*
70110391 TAAAGTATTGATACTT
1 TAAAGTATCGATACTT
70110407 TAAAGTATCGATACT
1 TAAAGTATCGATACT
70110422 AATTACAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.39
Consensus pattern (16 bp):
TAAAGTATCGATACTT
Found at i:70119658 original size:31 final size:29
Alignment explanation
Indices: 70119555--70119637 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
70119545 GTGACGAGAT
70119555 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
70119584 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
70119613 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
70119638 AAAATACGGC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:70119678 original size:60 final size:58
Alignment explanation
Indices: 70119551--70119687 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 58
70119541 TACGGTGACG
* * *
70119551 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
70119608 ATATATGGCACTAAGTGTGCATGCTGGAAAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGG--AAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
70119668 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
70119688 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
57 3 0.05
58 22 0.33
60 40 0.61
61 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:70127710 original size:31 final size:29
Alignment explanation
Indices: 70127637--70127702 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 29
70127627 TGACGAGATT
* *
70127637 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAC
70127666 GGCACTAAGTGTGCATGCTGGAAAAAAATAC
1 GGCACTAAGTGTGCATGCTGG--AAAAATAC
70127697 GGCACT
1 GGCACT
70127703 GGGTGTGCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 21 0.64
31 12 0.36
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAC
Found at i:70135375 original size:49 final size:49
Alignment explanation
Indices: 70135260--70135433 Score: 258
Period size: 49 Copynumber: 3.5 Consensus size: 49
70135250 TGAGGTCGCA
* * **
70135260 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
70135310 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* * * *
70135359 TGTGTACTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
70135408 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
70135434 TGCGTACCAG
Statistics
Matches: 114, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
49 76 0.67
50 38 0.33
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:70138457 original size:15 final size:16
Alignment explanation
Indices: 70138434--70138481 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
70138424 TAGTATCGTA
70138434 TCTTGGGTTTCTTTAT
1 TCTTGGGTTTCTTTAT
70138450 TC-TGGGTTT-TTCTA-
1 TCTTGGGTTTCTT-TAT
*
70138464 TCTTGGATTTCTTTAT
1 TCTTGGGTTTCTTTAT
70138480 TC
1 TC
70138482 GATTTTCTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
14 4 0.15
15 17 0.63
16 6 0.22
ACGTcount: A:0.08, C:0.15, G:0.17, T:0.60
Consensus pattern (16 bp):
TCTTGGGTTTCTTTAT
Found at i:70140783 original size:49 final size:49
Alignment explanation
Indices: 70140617--70140840 Score: 315
Period size: 49 Copynumber: 4.5 Consensus size: 49
70140607 TGAGGTCGCA
* * * *
70140617 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAATTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTG-G-TCACG
* **
70140668 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
*
70140718 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* *
70140767 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
*
70140816 TGTGTAGTACTATGTGCA-GCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
70140841 TGCATACCAG
Statistics
Matches: 157, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
48 7 0.04
49 70 0.45
50 43 0.27
51 36 0.23
52 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:70140804 original size:99 final size:100
Alignment explanation
Indices: 70140610--70140840 Score: 333
Period size: 99 Copynumber: 2.3 Consensus size: 100
70140600 TCTATTGTGA
* *
70140610 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAATTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAATTGTGATCACGTGTGTAG
* **
70140675 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
70140710 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTG-G-TCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAATTGTGATCACGTGTGTA
70140773 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
70140809 GGTCGCATGTGTAGTACTATGTGCA-GCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
70140841 TGCATACCAG
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
97 7 0.06
98 22 0.19
99 44 0.37
100 1 0.01
101 44 0.37
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAATTGTGATCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:70144505 original size:49 final size:49
Alignment explanation
Indices: 70144438--70144735 Score: 515
Period size: 49 Copynumber: 6.1 Consensus size: 49
70144428 TTTACCACAT
* *
70144438 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* * *
70144487 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
70144536 ATATGTATATAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
70144585 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
70144634 ATATGTATACATTTTCACATTCATCACGTCGGCCTTTAGGCCTTATCAC
1 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
70144683 ATAGGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
70144732 ATAT
1 ATAT
70144736 ATTATTATGT
Statistics
Matches: 236, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 236 1.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (49 bp):
ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:70150298 original size:19 final size:19
Alignment explanation
Indices: 70150270--70150307 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
70150260 CAGATGCCCA
*
70150270 TAAGAACTAATCCAACCAT
1 TAAGAACTAAACCAACCAT
*
70150289 TAAGAGCTAAACCAACCAT
1 TAAGAACTAAACCAACCAT
70150308 CACACCAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.47, C:0.26, G:0.08, T:0.18
Consensus pattern (19 bp):
TAAGAACTAAACCAACCAT
Found at i:70150331 original size:33 final size:33
Alignment explanation
Indices: 70150289--70150447 Score: 248
Period size: 33 Copynumber: 4.8 Consensus size: 33
70150279 ATCCAACCAT
*
70150289 TAAGAGCTAAACCAACCATCACACCAATGCTCA
1 TAAGAGCTAAACCAACCAGCACACCAATGCTCA
*
70150322 TAAGAGCTAATCCAACCAGCACACCAATGCTCA
1 TAAGAGCTAAACCAACCAGCACACCAATGCTCA
*
70150355 TAAGAGCTAAACCAACCATCACACCAATGCTCA
1 TAAGAGCTAAACCAACCAGCACACCAATGCTCA
70150388 TAAGAGC-AAATCCAACCAGCACACCAATGCTCA
1 TAAGAGCTAAA-CCAACCAGCACACCAATGCTCA
* * *
70150421 TAAGACCTTATCCAACCAGCACACCAA
1 TAAGAGCTAAACCAACCAGCACACCAA
70150448 AGAGAGAGTA
Statistics
Matches: 116, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
32 3 0.03
33 112 0.97
34 1 0.01
ACGTcount: A:0.42, C:0.34, G:0.10, T:0.14
Consensus pattern (33 bp):
TAAGAGCTAAACCAACCAGCACACCAATGCTCA
Found at i:70150366 original size:66 final size:66
Alignment explanation
Indices: 70150289--70150447 Score: 273
Period size: 66 Copynumber: 2.4 Consensus size: 66
70150279 ATCCAACCAT
*
70150289 TAAGAGCTAAACCAACCATCACACCAATGCTCATAAGAGCTAATCCAACCAGCACACCAATGCTC
1 TAAGAGCTAAACCAACCATCACACCAATGCTCATAAGAGCAAATCCAACCAGCACACCAATGCTC
70150354 A
66 A
70150355 TAAGAGCTAAACCAACCATCACACCAATGCTCATAAGAGCAAATCCAACCAGCACACCAATGCTC
1 TAAGAGCTAAACCAACCATCACACCAATGCTCATAAGAGCAAATCCAACCAGCACACCAATGCTC
70150420 A
66 A
* * * *
70150421 TAAGACCTTATCCAACCAGCACACCAA
1 TAAGAGCTAAACCAACCATCACACCAA
70150448 AGAGAGAGTA
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 88 1.00
ACGTcount: A:0.42, C:0.34, G:0.10, T:0.14
Consensus pattern (66 bp):
TAAGAGCTAAACCAACCATCACACCAATGCTCATAAGAGCAAATCCAACCAGCACACCAATGCTC
A
Found at i:70152583 original size:39 final size:39
Alignment explanation
Indices: 70152528--70152816 Score: 285
Period size: 39 Copynumber: 7.4 Consensus size: 39
70152518 CACAACACAA
* *
70152528 AAGTGCTATCAGGGGTACTGAAGTACAACAGGGGCACGT
1 AAGTGCGATCAAGGGTACTGAAGTACAACAGGGGCACGT
* * *
70152567 AAGTGCGATCAAGGGTACCGAAATACAATAGGGGCACGT
1 AAGTGCGATCAAGGGTACTGAAGTACAACAGGGGCACGT
* * * *
70152606 ATGTGTGATC-AGGGATACCGAAGTACAACAGGGGCATGT
1 AAGTGCGATCAAGGG-TACTGAAGTACAACAGGGGCACGT
* * * * * * *
70152645 AAGAGTGATCAGGGGTACTAAAGTACAAAAGGGGGTACAT
1 AAGTGCGATCAAGGGTACTGAAGTACAACA-GGGGCACGT
* * * * *
70152685 ATGTGCGATCAAGGGTACCGAAGGACAACAGAGGCACTT
1 AAGTGCGATCAAGGGTACTGAAGTACAACAGGGGCACGT
*
70152724 AAGTGCGATCAAGGGTACTAAAGTACAACAGGGGCACGT
1 AAGTGCGATCAAGGGTACTGAAGTACAACAGGGGCACGT
* * * * *
70152763 ATGTGGGATTAGGGGTACTGAAGTACAACAGAGGCACGT
1 AAGTGCGATCAAGGGTACTGAAGTACAACAGGGGCACGT
* *
70152802 ATGTGTGATC-AGGGT
1 AAGTGCGATCAAGGGT
70152817 TACAATTATA
Statistics
Matches: 202, Mismatches: 45, Indels: 7
0.80 0.18 0.03
Matches are distributed among these distances:
38 8 0.04
39 163 0.81
40 31 0.15
ACGTcount: A:0.33, C:0.16, G:0.33, T:0.18
Consensus pattern (39 bp):
AAGTGCGATCAAGGGTACTGAAGTACAACAGGGGCACGT
Found at i:70152640 original size:78 final size:78
Alignment explanation
Indices: 70152530--70152816 Score: 335
Period size: 78 Copynumber: 3.7 Consensus size: 78
70152520 CAACACAAAA
* * * *
70152530 GTGCTATCAGGGGTACTGAAGTACAACAGGGGCACGTAAGTGCGATCAAGGGTACCGAAA-TACA
1 GTGCGATCAGGGGTACCGAAGTACAACAGAGGCACGTAAGTGCGATCAAGGGTA-CTAAAGTACA
*
70152594 ATAGGGGCACGTAT
65 AAAGGGGCACGTAT
* * * * * * *
70152608 GTGTGATCAGGGATACCGAAGTACAACAGGGGCATGTAAGAGTGATCAGGGGTACTAAAGTACAA
1 GTGCGATCAGGGGTACCGAAGTACAACAGAGGCACGTAAGTGCGATCAAGGGTACTAAAGTACAA
* *
70152673 AAGGGGGTACATAT
66 AA-GGGGCACGTAT
* * *
70152687 GTGCGATCAAGGGTACCGAAGGACAACAGAGGCACTTAAGTGCGATCAAGGGTACTAAAGTACAA
1 GTGCGATCAGGGGTACCGAAGTACAACAGAGGCACGTAAGTGCGATCAAGGGTACTAAAGTACAA
*
70152752 CAGGGGCACGTAT
66 AAGGGGCACGTAT
* * * * *
70152765 GTGGGATTAGGGGTACTGAAGTACAACAGAGGCACGTATGTGTGATC-AGGGT
1 GTGCGATCAGGGGTACCGAAGTACAACAGAGGCACGTAAGTGCGATCAAGGGT
70152817 TACAATTATA
Statistics
Matches: 174, Mismatches: 33, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
77 9 0.05
78 100 0.57
79 65 0.37
ACGTcount: A:0.33, C:0.16, G:0.33, T:0.18
Consensus pattern (78 bp):
GTGCGATCAGGGGTACCGAAGTACAACAGAGGCACGTAAGTGCGATCAAGGGTACTAAAGTACAA
AAGGGGCACGTAT
Found at i:70152748 original size:118 final size:117
Alignment explanation
Indices: 70152535--70152816 Score: 316
Period size: 118 Copynumber: 2.4 Consensus size: 117
70152525 CAAAAGTGCT
* * * * *
70152535 ATCAGGGGTACTGAAGTACAACAGGGGCACGTAAGTGCGATCAAGGGTACCGAAATACAATAGGG
1 ATCAGGGGTACTGAAGTACAAAAGGGGCACATAAGTGCGATCAAGGGTACCGAAAGACAACAGAG
* * * * *
70152600 GCACGTATGTGTGATCAGGGATACCGAAGTACAACAGGGGCATGTAAGAGTG
66 GCACGTAAGTGCGATCAGGGATACCAAAGTACAACAGGGGCACGTAAGAGGG
* * * *
70152652 ATCAGGGGTACTAAAGTACAAAAGGGGGTACATATGTGCGATCAAGGGTACCGAAGGACAACAGA
1 ATCAGGGGTACTGAAGTACAAAA-GGGGCACATAAGTGCGATCAAGGGTACCGAAAGACAACAGA
* * * *
70152717 GGCACTTAAGTGCGATCAAGGG-TACTAAAGTACAACAGGGGCACGTATGTGGG
65 GGCACGTAAGTGCGATC-AGGGATACCAAAGTACAACAGGGGCACGTAAGAGGG
* * * * * *
70152770 ATTAGGGGTACTGAAGTACAACAGAGGCACGTATGTGTGATC-AGGGT
1 ATCAGGGGTACTGAAGTACAAAAGGGGCACATAAGTGCGATCAAGGGT
70152817 TACAATTATA
Statistics
Matches: 138, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
116 5 0.04
117 36 0.26
118 93 0.67
119 4 0.03
ACGTcount: A:0.33, C:0.16, G:0.33, T:0.18
Consensus pattern (117 bp):
ATCAGGGGTACTGAAGTACAAAAGGGGCACATAAGTGCGATCAAGGGTACCGAAAGACAACAGAG
GCACGTAAGTGCGATCAGGGATACCAAAGTACAACAGGGGCACGTAAGAGGG
Found at i:70161710 original size:20 final size:20
Alignment explanation
Indices: 70161685--70161722 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
70161675 ATATGCCGAC
*
70161685 AAAAATCACTTTTTCACTAT
1 AAAAATCAATTTTTCACTAT
70161705 AAAAATCAATTTTTCACT
1 AAAAATCAATTTTTCACT
70161723 TTGGCATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAAATCAATTTTTCACTAT
Found at i:70166524 original size:28 final size:28
Alignment explanation
Indices: 70166493--70166562 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
70166483 ATATTTTCCT
*
70166493 TCGCACACTTAGTGCTCGA-TAATCAAAC
1 TCGCACACTTAGTGCTC-ATTAACCAAAC
70166521 TCGCACACTTAGTGCTCATTAACCAAAC
1 TCGCACACTTAGTGCTCATTAACCAAAC
**
70166549 TCGCATGCTTAGTG
1 TCGCACACTTAGTG
70166563 AAATTTTCAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 1 0.03
28 37 0.97
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
TCGCACACTTAGTGCTCATTAACCAAAC
Found at i:70175285 original size:10 final size:10
Alignment explanation
Indices: 70175270--70175294 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
70175260 CTTACTTCAT
70175270 CATTTCTATC
1 CATTTCTATC
70175280 CATTTCTATC
1 CATTTCTATC
70175290 CATTT
1 CATTT
70175295 GGTTCTACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.28, G:0.00, T:0.52
Consensus pattern (10 bp):
CATTTCTATC
Found at i:70178451 original size:964 final size:964
Alignment explanation
Indices: 70176189--70178950 Score: 5249
Period size: 966 Copynumber: 2.9 Consensus size: 964
70176179 GTGTTGAAAC
70176189 ATTGTAACACCCCGAACCCGAGACCATCGCCGGTGTCGGACACGAGGGGTTAACAAGCCAAGTTC
1 ATTGTAACACCCCGAACCCGAGACCATCGCCGGTGTCGGACACGAGGGGTTAACAAGCCAAGTTC
*
70176254 ACATGTTTTGCCCACCAATTTGACATTTCCAGTCAGGCTGGAAAACTGCGTCACCGTTGCCTTAA
66 ACATGTTTTGCCCACCAATTTGACATTTCCAGTCAGGCTGGAAAACTGCGTCACCGTCGCCTTAA
70176319 AAATCATATCTCGAGTTTCAAAACTCGGAAACTGGTTTCGTAAATTTTCCCTGAATTTAGACTCA
131 AAATCATATCTCGAGTTTCAAAACTCGGAAACTGGTTTCGTAAATTTTCCCTGAATTTAGACTCA
70176384 TATATCCATCCATGGATTTATTTCTAGAATTTTTGGTCAGGCCAATTGGTACAGTTTATTAGTTA
196 TATATCCATCCATGGATTTATTTCTAGAATTTTTGGTCAGGCCAATTGGTACAGTTTATTAGTTA
* ** *
70176449 AAGTCACCCATGTTACAGGGATCGACTGCTCTGACCTTCACGCGTTATCACTTGAATATCTCTCT
261 AAGTCACCCATGTTACAGGGATCGACTGCTCTGACTTTTGCGCGTTATAACTTGAATATCTCTCT
*
70176514 GTACAGGGCTTTAATACTGGTGCCGTTTGTTTCTAATGAAACTAGACTCAAAATGGAATCTGTAC
326 GTACAGGGCTTTAATACTGGTGCCGTTTGTTTCTAATGAAACTAGACTCAAAATTGAATCTGTAC
*
70176579 ATATAAGGTACGACTCCTAATTCTTTCTGGATAATTTATAGTAAATTTTTAAAGTTGCGACAGGG
391 ATATAAGGTAAGACTCCTAATTCTTTCTGGATAATTTATAGTAAATTTTTAAAGTTGCGACAGGG
70176644 GACCCAGAAACCGTTCTGGCCCTGTCTCACAATAGCTTTAATATCTCTTAACATGTAACTCCTAT
456 GACCCAGAAACCGTTCTGGCCCTGTCTCACAATAGCTTTAATATCTCTTAACATGTAACTCCTAT
70176709 GACCATTTCGTTTCTTCCATATGAAAATAGACTCATCAAGGTTCATTTACATAGCTTATTCACTA
521 GACCATTTCGTTTCTTCCATATGAAAATAGACTCATCAAGGTTCATTTACATAGCTTATTCACTA
70176774 TTTAATACCATTCCTACAAATTTTGGTGATTTTTCACATTCACGTCACTGCAGCTGGCAGCATCT
586 TTTAATACCATTCCTACAAATTTTGGTGATTTTTCACATTCACGTCACTGCAGCTGGCAGCATCT
* *
70176839 GTTTTTAAGGTAGGTCTTACCTATTTGGTAGTCTCCATGAACCAACCAGTCTTGCCATACATAGG
651 GTTTTTAAGGTAGGTCTTACCTATTTTGTAGTCTCCATGAACCAACTAGTCTTGCCATACATAGG
* * *
70176904 TTCATATATGATCATTTTAACCATGCCAATGGCTGATCATGTGACCAACATTCCCATTTACAATC
716 TTCATATATGATCATTTTAACCATACCAATGGCTGATCATGTGACCAACACTCCCATTTCCAATC
** * **
70176969 CATGGTCACATCATGACACCAAATATATACATATACAAACCGCAAATAGTCTAAGTCGATACTAT
781 CATAATCACATCATGACACCATATATATAC--ATACAAACCAAAAATAGTCTAAGTCGATACTAT
70177034 AAAGTCAAATTGTCAGAAATCACCACACTATAGAGTCATCATTTAATGGCATGTATAGCTAGACC
844 AAAGTCAAATTGTCAGAAATCACCACACTATAGAGTCATCATTTAATGGCATGTATAGCTAGACC
*
70177099 CCAAATACATCACGGTAGTCCTAGAATCGACTAAACCTGGCTCTGATACCAATAAA
909 CCAAACACATCACGGTAGTCCTAGAATCGACTAAACCTGGCTCTGATACCAATAAA
70177155 ATTGTAACACCCCGAACCCGAGACCATCGCCGGTGTCGGACACGAGGGGTTAACAAGCCAAGTTC
1 ATTGTAACACCCCGAACCCGAGACCATCGCCGGTGTCGGACACGAGGGGTTAACAAGCCAAGTTC
70177220 ACATGTTTTGCCCACCAATTTGACATTTCCAGTCAGGCTGGAAAACTGCGTCACCGTCGCCTTAA
66 ACATGTTTTGCCCACCAATTTGACATTTCCAGTCAGGCTGGAAAACTGCGTCACCGTCGCCTTAA
* *
70177285 AAATCATATCTCGAGTTTCAAAACTCCGAAACTGGTTTTGTAAATTTTCCCTGAATTTAGACTCA
131 AAATCATATCTCGAGTTTCAAAACTCGGAAACTGGTTTCGTAAATTTTCCCTGAATTTAGACTCA
*
70177350 TATATCCATCCATGGATTTATTTCTAGAATTTTTGGTCTGGCCAATTGGTACAGTTTATTAGTTA
196 TATATCCATCCATGGATTTATTTCTAGAATTTTTGGTCAGGCCAATTGGTACAGTTTATTAGTTA
70177415 AAGTCACCCATGTTACAGGGATCGACTGCTCTGACTTTTGCGCGTTATAACTTGAATATCTCTCT
261 AAGTCACCCATGTTACAGGGATCGACTGCTCTGACTTTTGCGCGTTATAACTTGAATATCTCTCT
*
70177480 GTACAGGGATTTAATACTGGTGCCGTTTGTTTCTAATGAAACTAGACTCAAAATTGAATCTGTAC
326 GTACAGGGCTTTAATACTGGTGCCGTTTGTTTCTAATGAAACTAGACTCAAAATTGAATCTGTAC
70177545 ATATAAGGTAAGACTCCTAATTCTTTCTGGATAATTTATAGTAAATTTTTAAAGTTGCGACAGGG
391 ATATAAGGTAAGACTCCTAATTCTTTCTGGATAATTTATAGTAAATTTTTAAAGTTGCGACAGGG
*
70177610 GACCAAGAAACCGTTCTGGCCCTGTCTCACAATAGCTTTAATATCTCTTAACATGTAACTCCTAT
456 GACCCAGAAACCGTTCTGGCCCTGTCTCACAATAGCTTTAATATCTCTTAACATGTAACTCCTAT
70177675 GACCATTTCGTTTCTTCCATATGAAAATAGACTCATCAAGGTTCATTTACATAGCTTATTCACTA
521 GACCATTTCGTTTCTTCCATATGAAAATAGACTCATCAAGGTTCATTTACATAGCTTATTCACTA
*
70177740 TTTAATACCATTCCTAAAAATTTTGGTGATTTTTCACATTCACGTCACTGCAGCTGGCAGCATCT
586 TTTAATACCATTCCTACAAATTTTGGTGATTTTTCACATTCACGTCACTGCAGCTGGCAGCATCT
70177805 GTTTTTAAGGTAGGTCTTACCTATTTTGTAGTCTCCATGAACCAACTAGTCTTGCCATACATAGG
651 GTTTTTAAGGTAGGTCTTACCTATTTTGTAGTCTCCATGAACCAACTAGTCTTGCCATACATAGG
70177870 TTCATATATGATCATTTTAACCATACCAATGGCTGATCATGTGACCAACACTCCCATTTCCAATC
716 TTCATATATGATCATTTTAACCATACCAATGGCTGATCATGTGACCAACACTCCCATTTCCAATC
*
70177935 CATAATCACATCATGAAACCATATATATACATACAAACCAAAAATAGTCTAAGTCGATACTATAA
781 CATAATCACATCATGACACCATATATATACATACAAACCAAAAATAGTCTAAGTCGATACTATAA
70178000 AGTCAAATTGTCAGAAATCACCACACTATAGAGTCATCATTTAATGGCATGTATAGCTAGACCCC
846 AGTCAAATTGTCAGAAATCACCACACTATAGAGTCATCATTTAATGGCATGTATAGCTAGACCCC
70178065 AAACACATCACGGTAGTCCTAGAATCGACTAAACCTGGCTCTGATACCAATAAA
911 AAACACATCACGGTAGTCCTAGAATCGACTAAACCTGGCTCTGATACCAATAAA
70178119 ATTGTAACACCCCGAACCCGAGACCATCGCCGGTGTCGGACACGAGGGGTTAACAAGCCAAGTTC
1 ATTGTAACACCCCGAACCCGAGACCATCGCCGGTGTCGGACACGAGGGGTTAACAAGCCAAGTTC
70178184 ACATGTTTTGCCCACCAATTTGACATTTCCAGTCAGGCTGGAAAACTGCGTCACCGTCGCCTTAA
66 ACATGTTTTGCCCACCAATTTGACATTTCCAGTCAGGCTGGAAAACTGCGTCACCGTCGCCTTAA
70178249 AAATCATATCTCGAGTTTCAAAACTCGGAAACTGGTTTCGTAAATTTTCCCTGAATTTAGACTCA
131 AAATCATATCTCGAGTTTCAAAACTCGGAAACTGGTTTCGTAAATTTTCCCTGAATTTAGACTCA
*
70178314 TATATCCATCCATGGATTTATTTCTAGAATTTTTGGCCAGGCCAATTGGTACAGTTTATTAGTTA
196 TATATCCATCCATGGATTTATTTCTAGAATTTTTGGTCAGGCCAATTGGTACAGTTTATTAGTTA
70178379 AAGTCACCCATGTTACAGGGATCGACTGCTCTGACTTTTGCGCGTTATAACTTGAATATCTCTCT
261 AAGTCACCCATGTTACAGGGATCGACTGCTCTGACTTTTGCGCGTTATAACTTGAATATCTCTCT
70178444 GTACAGGGCTTTAATACTGGTGCCGTTTGTTTCTAATGAAACTAGACTCAAAA-TGAATCTGTAC
326 GTACAGGGCTTTAATACTGGTGCCGTTTGTTTCTAATGAAACTAGACTCAAAATTGAATCTGTAC
70178508 ATATAAGGTAAGACTCCTAATTCTTTCTGGATAATTTATAGTAAATTTTTAAAGTTGCGACAGGG
391 ATATAAGGTAAGACTCCTAATTCTTTCTGGATAATTTATAGTAAATTTTTAAAGTTGCGACAGGG
70178573 GACCCAGAAACCGTTCTGGCCCTGTCTCACAATAGCTTTAATATCTCTTAACATGTAACTCCTAT
456 GACCCAGAAACCGTTCTGGCCCTGTCTCACAATAGCTTTAATATCTCTTAACATGTAACTCCTAT
70178638 GACCATTTCGTTTCTTCCATATGAAAATAGACTCATCAAGGTTCATTTACATAGCTTATTCACTA
521 GACCATTTCGTTTCTTCCATATGAAAATAGACTCATCAAGGTTCATTTACATAGCTTATTCACTA
70178703 TTTAATACCATTCCTACAAATTTTGGTGATTTTTCACATTCACGTCACTGCAGCTGGCAGCATCT
586 TTTAATACCATTCCTACAAATTTTGGTGATTTTTCACATTCACGTCACTGCAGCTGGCAGCATCT
70178768 GTTTTTAAGGTAGGTCTTACCTATTTTGTAGTCTCCATGAACCAACTAGTCTTGCCATACATAGG
651 GTTTTTAAGGTAGGTCTTACCTATTTTGTAGTCTCCATGAACCAACTAGTCTTGCCATACATAGG
70178833 TTCATATATGATCA-TTTAACCATACCAATGGCTGATCATGTGACCAACACTCCCATTTCCAATC
716 TTCATATATGATCATTTTAACCATACCAATGGCTGATCATGTGACCAACACTCCCATTTCCAATC
*
70178897 CATAATCACATCATGACACCATATATATACATACAAACCAAAAATAGTCCAAGT
781 CATAATCACATCATGACACCATATATATACATACAAACCAAAAATAGTCTAAGT
70178951 TCATGCTTCC
Statistics
Matches: 1762, Mismatches: 34, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
962 102 0.06
963 348 0.20
964 524 0.30
966 788 0.45
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.32
Consensus pattern (964 bp):
ATTGTAACACCCCGAACCCGAGACCATCGCCGGTGTCGGACACGAGGGGTTAACAAGCCAAGTTC
ACATGTTTTGCCCACCAATTTGACATTTCCAGTCAGGCTGGAAAACTGCGTCACCGTCGCCTTAA
AAATCATATCTCGAGTTTCAAAACTCGGAAACTGGTTTCGTAAATTTTCCCTGAATTTAGACTCA
TATATCCATCCATGGATTTATTTCTAGAATTTTTGGTCAGGCCAATTGGTACAGTTTATTAGTTA
AAGTCACCCATGTTACAGGGATCGACTGCTCTGACTTTTGCGCGTTATAACTTGAATATCTCTCT
GTACAGGGCTTTAATACTGGTGCCGTTTGTTTCTAATGAAACTAGACTCAAAATTGAATCTGTAC
ATATAAGGTAAGACTCCTAATTCTTTCTGGATAATTTATAGTAAATTTTTAAAGTTGCGACAGGG
GACCCAGAAACCGTTCTGGCCCTGTCTCACAATAGCTTTAATATCTCTTAACATGTAACTCCTAT
GACCATTTCGTTTCTTCCATATGAAAATAGACTCATCAAGGTTCATTTACATAGCTTATTCACTA
TTTAATACCATTCCTACAAATTTTGGTGATTTTTCACATTCACGTCACTGCAGCTGGCAGCATCT
GTTTTTAAGGTAGGTCTTACCTATTTTGTAGTCTCCATGAACCAACTAGTCTTGCCATACATAGG
TTCATATATGATCATTTTAACCATACCAATGGCTGATCATGTGACCAACACTCCCATTTCCAATC
CATAATCACATCATGACACCATATATATACATACAAACCAAAAATAGTCTAAGTCGATACTATAA
AGTCAAATTGTCAGAAATCACCACACTATAGAGTCATCATTTAATGGCATGTATAGCTAGACCCC
AAACACATCACGGTAGTCCTAGAATCGACTAAACCTGGCTCTGATACCAATAAA
Found at i:70179527 original size:40 final size:40
Alignment explanation
Indices: 70179482--70179611 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
70179472 CGGAATATAA
70179482 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
70179522 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
70179562 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
70179602 CCGGATATAA
1 CCGGATATAA
70179612 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:70179626 original size:40 final size:40
Alignment explanation
Indices: 70179498--70179648 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
70179488 ATAAGCATGT
* * *
70179498 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
70179538 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
70179578 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* *
70179618 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
70179649 CATTCAATTT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 15 0.16
40 76 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:70179632 original size:80 final size:79
Alignment explanation
Indices: 70179498--70179648 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
70179488 ATAAGCATGT
*
70179498 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
70179563 CGGATATAGCCGCTA
65 CGGATATAGCCGCTA
* * ** * *
70179578 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
70179641 CCGGATAT
64 CCGGATAT
70179649 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCGCTA
Found at i:70187509 original size:40 final size:40
Alignment explanation
Indices: 70187464--70187631 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
70187454 CGGAATATAA
*
70187464 CCGGATATAAGCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * *
70187504 CCGGATAGAATG-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
70187544 CCGGATAT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
70187584 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
70187624 CCGGATAT
1 CCGGATAT
70187632 CATTCAATTT
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 102 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70187614 original size:80 final size:80
Alignment explanation
Indices: 70187480--70187631 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
70187470 ATAAGCATGT
* *
70187480 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
70187545 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
70187560 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
70187623 CCCGGATAT
64 CCCGGATAT
70187632 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:70190359 original size:13 final size:13
Alignment explanation
Indices: 70190341--70190365 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70190331 GAAGAAGGGG
70190341 TAATATTTATATT
1 TAATATTTATATT
70190354 TAATATTTATAT
1 TAATATTTATAT
70190366 ACTAAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TAATATTTATATT
Found at i:70195182 original size:30 final size:30
Alignment explanation
Indices: 70195133--70195191 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
70195123 TGAAAAAAAG
* *
70195133 GAACTTCTAATCGTTTATGTTCTTTGAAAT
1 GAACTTCTAACCGTGTATGTTCTTTGAAAT
*
70195163 GAACTTTTAACCGTGTATGTTCTTTGAAA
1 GAACTTCTAACCGTGTATGTTCTTTGAAA
70195192 GTTTTAGCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (30 bp):
GAACTTCTAACCGTGTATGTTCTTTGAAAT
Found at i:70197271 original size:39 final size:39
Alignment explanation
Indices: 70197191--70197458 Score: 466
Period size: 39 Copynumber: 6.9 Consensus size: 39
70197181 TACCAGTACA
** * *
70197191 AAGCCTGCGGGACTTTAACCC-GATACATTTCCCGCAAG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
70197229 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
*
70197268 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
70197307 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
70197346 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
*
70197385 AAGCCTGCGGGACTTTGGCCCGGATATATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
*
70197424 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAG
70197459 TGTCTTGCAT
Statistics
Matches: 220, Mismatches: 9, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
38 19 0.09
39 201 0.91
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.21
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
Found at i:70203591 original size:39 final size:39
Alignment explanation
Indices: 70203547--70203737 Score: 337
Period size: 39 Copynumber: 4.9 Consensus size: 39
70203537 TACCAGTACA
** *
70203547 AAGCCTGCGGGACTTTAACCCGGATACATTTCCCGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
70203586 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
70203625 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
*
70203664 AAGCCTGCGGGACTTTGGCCCGGATATATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
*
70203703 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAG
70203738 TGTCTTGCAT
Statistics
Matches: 146, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 146 1.00
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.21
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
Found at i:70208442 original size:40 final size:40
Alignment explanation
Indices: 70208398--70208507 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
70208388 TTCACAATTT
* *
70208398 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
70208438 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
70208478 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
70208508 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:70216497 original size:40 final size:40
Alignment explanation
Indices: 70216453--70216562 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
70216443 TTCACAATTT
* *
70216453 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
70216493 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
70216533 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
70216563 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:70221389 original size:2 final size:2
Alignment explanation
Indices: 70221382--70221410 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
70221372 ATATGCGTGC
70221382 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
70221411 AATTATTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:70223756 original size:10 final size:11
Alignment explanation
Indices: 70223740--70223769 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
70223730 TATTATTGAG
70223740 AAAAATAAAAT
1 AAAAATAAAAT
70223751 -AAAATAAAAT
1 AAAAATAAAAT
70223761 AAAAATAAA
1 AAAAATAAA
70223770 GAACACACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:70228190 original size:10 final size:11
Alignment explanation
Indices: 70228174--70228203 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
70228164 CAATTTGAGA
70228174 AAAAATAAAAT
1 AAAAATAAAAT
70228185 -AAAATAAAAT
1 AAAAATAAAAT
70228195 AAAAATAAA
1 AAAAATAAA
70228204 GAACACACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:70230422 original size:46 final size:46
Alignment explanation
Indices: 70230370--70230551 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
70230360 AGTGTGCTCT
* *
70230370 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
70230416 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
70230462 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
70230508 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGATACTATGGCA
1 CTGACATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
70230552 TCATGTCAAA
Statistics
Matches: 125, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
45 1 0.01
46 124 0.99
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:70236298 original size:6 final size:6
Alignment explanation
Indices: 70236287--70236327 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
70236277 AAAATAGTGT
70236287 TAATTA TAATTA TAATTA -AATTA -AATTA -AATTTA TAATTA T
1 TAATTA TAATTA TAATTA TAATTA TAATTA TAA-TTA TAATTA T
70236328 TAGTTAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 12 0.36
6 19 0.58
7 2 0.06
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
TAATTA
Found at i:70238467 original size:50 final size:48
Alignment explanation
Indices: 70238346--70238470 Score: 151
Period size: 48 Copynumber: 2.6 Consensus size: 48
70238336 GAGATGTGTC
* * * *
70238346 AGTGTAAGACCATGTCTGGGACATGGCATCGGTACGTATAAAGGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATAAAGGAGCT
* * **
70238394 AGTGTAAGACCATGTTTGAGACATGGCATCGGCACGGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATA-AAG-GAGCT
*
70238444 AGTGTAAGACTATGTCTGGGACATGGC
1 AGTGTAAGACCATGTCTGGGACATGGC
70238471 GCTGGCCTCG
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 36 0.56
49 1 0.02
50 27 0.42
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATAAAGGAGCT
Found at i:70240968 original size:56 final size:56
Alignment explanation
Indices: 70240907--70241054 Score: 242
Period size: 56 Copynumber: 2.6 Consensus size: 56
70240897 AGACAGGGTT
* ** *
70240907 TTACTCGCACACATATATCAGAATCATTTTTCGATGCCAACGTATAAAACATGGAC
1 TTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATAAAACATGGAC
*
70240963 TTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATAAACCATGGAC
1 TTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATAAAACATGGAC
*
70241019 TTACTGGCACACATATATCGGAATCACATATCGATG
1 TTACTCGCACACATATATCGGAATCACATATCGATG
70241055 TCATGGTCTT
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 86 1.00
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.26
Consensus pattern (56 bp):
TTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATAAAACATGGAC
Found at i:70241066 original size:44 final size:45
Alignment explanation
Indices: 70241012--70241100 Score: 135
Period size: 45 Copynumber: 2.0 Consensus size: 45
70241002 ACGTATAAAC
* * *
70241012 CATGGACTTACTGGCACA-CATATATCGGAATCACATATCGATGT
1 CATGGACTTACTCGCACATCACATATCGAAATCACATATCGATGT
*
70241056 CATGGTCTTACTCGCACATCACATATCGAAATCACATATCGATGT
1 CATGGACTTACTCGCACATCACATATCGAAATCACATATCGATGT
70241101 TAACGTATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (45 bp):
CATGGACTTACTCGCACATCACATATCGAAATCACATATCGATGT
Found at i:70241091 original size:13 final size:13
Alignment explanation
Indices: 70241073--70241097 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70241063 TTACTCGCAC
70241073 ATCACATATCGAA
1 ATCACATATCGAA
70241086 ATCACATATCGA
1 ATCACATATCGA
70241098 TGTTAACGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.24
Consensus pattern (13 bp):
ATCACATATCGAA
Found at i:70241136 original size:101 final size:101
Alignment explanation
Indices: 70240956--70241203 Score: 320
Period size: 101 Copynumber: 2.5 Consensus size: 101
70240946 ACGTATAAAA
* * *
70240956 CATGGACTTACTCGCACA-CATATATCGGAATCACATATCGATGCCAACGTATAAACCATGGACT
1 CATGGTCTTACTCGCACATCACATATCGAAATCACATATCGATGCCAACGTATAAACCATGGACT
* * * *
70241020 TACTGGCACACATATATCGGAATCACATATCGATGT
66 TACTCGCACACATATATAGGAATCACACATCGATGC
** * *
70241056 CATGGTCTTACTCGCACATCACATATCGAAATCACATATCGATGTTAACGTATTAAA-CGTGGTC
1 CATGGTCTTACTCGCACATCACATATCGAAATCACATATCGATGCCAACGTA-TAAACCATGGAC
* * *
70241120 TTACTCGCGCATATATATAGGAATCACCCATCGATGC
65 TTACTCGCACACATATATAGGAATCACACATCGATGC
* *
70241157 CATGGTCTTACTCGCACATCACATATCGGAATTCACATGTCGATGCC
1 CATGGTCTTACTCGCACATCACATATC-GAAATCACATATCGATGCC
70241204 TCATATACAT
Statistics
Matches: 127, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
100 17 0.13
101 91 0.72
102 19 0.15
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (101 bp):
CATGGTCTTACTCGCACATCACATATCGAAATCACATATCGATGCCAACGTATAAACCATGGACT
TACTCGCACACATATATAGGAATCACACATCGATGC
Found at i:70247509 original size:44 final size:45
Alignment explanation
Indices: 70247417--70247523 Score: 103
Period size: 44 Copynumber: 2.4 Consensus size: 45
70247407 ATTCCGCTAG
* *
70247417 AACTTAAAGGAGATAAGAATTGGTAACTTCAACTTGCTCCACTAC
1 AACTTAAAGAAGATAAGAATTGGTAACTTCAACTTGCCCCACTAC
* * * * *
70247462 AACTTCAAGAAGATAAG-GTTGGTAGCTTCAA-TCTGCCCCGCTTC
1 AACTTAAAGAAGATAAGAATTGGTAACTTCAACT-TGCCCCACTAC
*
70247506 AACTT-TAGAGAGATAAGA
1 AACTTAAAGA-AGATAAGA
70247524 TTTGCCATGA
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
43 4 0.08
44 32 0.63
45 15 0.29
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26
Consensus pattern (45 bp):
AACTTAAAGAAGATAAGAATTGGTAACTTCAACTTGCCCCACTAC
Found at i:70247830 original size:190 final size:190
Alignment explanation
Indices: 70247536--70247962 Score: 464
Period size: 190 Copynumber: 2.3 Consensus size: 190
70247526 TGCCATGATG
* * *
70247536 ACTTCCATCCGTCCCAATGCAACTTCAGTGTTATAGGATTTGTGACTTGTGGCTTAAATCTGTTC
1 ACTTCAATCCGTCCCAATGCAACTTCAGTGGTATAGGATTTGTGACTTGTGGCTTAAATCTATTC
* * * *** * * *
70247601 CTCTGCAACTTCAGGGAAATAAGATTTTCTATTTTTAGTCTGCTCCACTGCAATTTCAGGGAAAT
66 CACTGCAACATAAGGGAAATAAGATCCACTATCTTTAGTCTGCTCCACTACAACTTCAGGGAAAT
* *
70247666 AAGACTTGTGGCTTGAATCTGCTCCACTACAACTTCAAGGAGACGAGATTCACCATGGTA
131 AAGACTTGTGGCTTCAATCTGCTCCACTAAAACTTCAAGGAGACGAGATTCACCATGGTA
* * * * **
70247726 ACTTCAATCCGTCCCACTGCAACTTTAG-GAGTATAGGATTTGTGATTTGTTGCTTTGATCTATT
1 ACTTCAATCCGTCCCAATGCAACTTCAGTG-GTATAGGATTTGTGACTTGTGGCTTAAATCTATT
* * * * *
70247790 CCACTGTAACATAAGGGAAGTAAGATCCACTATCTTTAGTCTGTTCCGCTACAACTTCAGGGAGA
65 CCACTGCAACATAAGGGAAATAAGATCCACTATCTTTAGTCTGCTCCACTACAACTTCAGGGAAA
* * * ** * *
70247855 TGAGACTTGTGGCTTCAATCTGCTCCACTAAAATTTCATGGAGATAAGATGCTA-CATGGTG
130 TAAGACTTGTGGCTTCAATCTGCTCCACTAAAACTTCAAGGAGACGAGATTC-ACCATGGTA
** * * * * *
70247916 ACTT-AATCCAACCTATTGCAACTTCAGAGGTACATGATTTGTGACTT
1 ACTTCAATCCGTCCCAATGCAACTTCAGTGGTATAGGATTTGTGACTT
70247963 CACTGGTCTG
Statistics
Matches: 194, Mismatches: 40, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
189 34 0.18
190 159 0.82
191 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (190 bp):
ACTTCAATCCGTCCCAATGCAACTTCAGTGGTATAGGATTTGTGACTTGTGGCTTAAATCTATTC
CACTGCAACATAAGGGAAATAAGATCCACTATCTTTAGTCTGCTCCACTACAACTTCAGGGAAAT
AAGACTTGTGGCTTCAATCTGCTCCACTAAAACTTCAAGGAGACGAGATTCACCATGGTA
Found at i:70250834 original size:40 final size:40
Alignment explanation
Indices: 70250779--70250943 Score: 172
Period size: 40 Copynumber: 4.1 Consensus size: 40
70250769 TGAATGATAC
* * * *
70250779 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
*
70250819 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAATTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGC-AAGTGATTATAT
* ** *
70250859 CCGGGCTAAAGACCCGAAGGCAATTGTGCAAGTCACCAAAT
1 CCGGGCT-AAGACCCGAAGGCAATTGTGCAAGTGATTATAT
* ** *
70250900 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
70250940 CCGG
1 CCGG
70250944 TTGAATCCCG
Statistics
Matches: 102, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
39 2 0.02
40 68 0.67
41 29 0.28
42 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
Found at i:70256441 original size:19 final size:19
Alignment explanation
Indices: 70256408--70256456 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 19
70256398 TAAAAATTTC
*
70256408 AAATTTTATA-TTTTTAAA
1 AAATTTTAAATTTTTTAAA
70256426 AAATTTATAAATTTTTTAAA
1 AAATTT-TAAATTTTTTAAA
*
70256446 AAATTCTAAAT
1 AAATTTTAAAT
70256457 ATAAAGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 6 0.22
19 8 0.30
20 13 0.48
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
AAATTTTAAATTTTTTAAA
Found at i:70257243 original size:2 final size:2
Alignment explanation
Indices: 70257236--70257271 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
70257226 AAGAAATACG
70257236 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70257272 CTTGGGGACC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:70260261 original size:46 final size:46
Alignment explanation
Indices: 70260194--70260371 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
70260184 TGTAACCCGC
* *
70260194 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * *
70260240 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * * **
70260286 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
*
70260333 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
70260372 CCCAAATATC
Statistics
Matches: 106, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
46 72 0.68
47 34 0.32
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:70260313 original size:93 final size:93
Alignment explanation
Indices: 70260201--70260373 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
70260191 CGCCCATAAG
****
70260201 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70260266 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
70260294 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
70260359 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
70260374 CAAATATCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:70263997 original size:29 final size:27
Alignment explanation
Indices: 70263963--70264065 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
70263953 TACTCAATCA
*
70263963 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
70263992 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
* *
70264021 CACACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
70264050 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
70264066 ATCTCGTCCC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:70265969 original size:29 final size:29
Alignment explanation
Indices: 70265932--70265989 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
70265922 AACGTATAAT
70265932 GGTCGCTCACTTGGGGACATAAAAATGGA
1 GGTCGCTCACTTGGGGACATAAAAATGGA
70265961 GGTCGCTCACTTGGGGACATAAAAATGGA
1 GGTCGCTCACTTGGGGACATAAAAATGGA
70265990 AGCCATCACC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.21
Consensus pattern (29 bp):
GGTCGCTCACTTGGGGACATAAAAATGGA
Found at i:70268957 original size:18 final size:18
Alignment explanation
Indices: 70268934--70268969 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
70268924 TTAAGCAATA
*
70268934 AAAATTGGAAATTTTGTG
1 AAAATTGGAAAATTTGTG
70268952 AAAATTGGAAAATTTGTG
1 AAAATTGGAAAATTTGTG
70268970 TCTATTTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.22, T:0.36
Consensus pattern (18 bp):
AAAATTGGAAAATTTGTG
Found at i:70269710 original size:20 final size:22
Alignment explanation
Indices: 70269673--70269717 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
70269663 TTTAATTCTT
* *
70269673 TTTTTTAGAGTTAGGGGTTTGG
1 TTTTTTAAAGTTAGGGGTTAGG
70269695 TTTTTTAAAG-TA-GGGTTAGG
1 TTTTTTAAAGTTAGGGGTTAGG
70269715 TTT
1 TTT
70269718 ATGGTTTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 10 0.48
21 2 0.10
22 9 0.43
ACGTcount: A:0.18, C:0.00, G:0.31, T:0.51
Consensus pattern (22 bp):
TTTTTTAAAGTTAGGGGTTAGG
Found at i:70269876 original size:22 final size:21
Alignment explanation
Indices: 70269830--70269874 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
70269820 TAAAGTTGAT
* *
70269830 AATTATTTAATTTTATATTCA
1 AATTATTTAATTTAAAATTCA
70269851 AATTATTTGAATTGTAAAATTCA
1 AATTATTT-AATT-TAAAATTCA
70269874 A
1 A
70269875 TTCGATTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 4 0.20
23 8 0.40
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.49
Consensus pattern (21 bp):
AATTATTTAATTTAAAATTCA
Found at i:70270044 original size:34 final size:33
Alignment explanation
Indices: 70269997--70270066 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 33
70269987 GGTCGATTAG
70269997 ATTTTTAGTGCATTATTTTCGAACTTTCAGAGC
1 ATTTTTAGTGCATTATTTTCGAACTTTCAGAGC
* * *
70270030 ATTTTTCGATGCATTATTTTTGAACTTTCAGTGC
1 ATTTTTAG-TGCATTATTTTCGAACTTTCAGAGC
70270064 ATT
1 ATT
70270067 ATGAAAATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 7 0.21
34 26 0.79
ACGTcount: A:0.23, C:0.14, G:0.14, T:0.49
Consensus pattern (33 bp):
ATTTTTAGTGCATTATTTTCGAACTTTCAGAGC
Found at i:70271025 original size:17 final size:17
Alignment explanation
Indices: 70271003--70271041 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
70270993 TTGCTCGGTT
70271003 TTTTTATAATTTTTACG
1 TTTTTATAATTTTTACG
70271020 TTTTTATAATTTTTACG
1 TTTTTATAATTTTTACG
70271037 TTTTT
1 TTTTT
70271042 GAGATCATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTTTATAATTTTTACG
Found at i:70272778 original size:35 final size:35
Alignment explanation
Indices: 70272732--70272808 Score: 136
Period size: 35 Copynumber: 2.2 Consensus size: 35
70272722 TTGAATGAGT
*
70272732 AAGTTTTATGTATAGTTCAGGACGGATGTGGTATG
1 AAGTTTTATGTATAGTTCAAGACGGATGTGGTATG
70272767 AAGTTTTATGTATAGTTCAAGACGGATGTGGTATG
1 AAGTTTTATGTATAGTTCAAGACGGATGTGGTATG
*
70272802 AACTTTT
1 AAGTTTT
70272809 GGAGGCTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.27, C:0.06, G:0.27, T:0.39
Consensus pattern (35 bp):
AAGTTTTATGTATAGTTCAAGACGGATGTGGTATG
Found at i:70275383 original size:40 final size:40
Alignment explanation
Indices: 70275338--70275504 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
70275328 CGGAATATAA
70275338 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
70275378 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** *
70275418 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTT-GAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAG-C
** * * * *
70275458 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
70275497 CCGGATAT
1 CCGGATAT
70275505 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70280314 original size:17 final size:18
Alignment explanation
Indices: 70280276--70280319 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
70280266 TGATGATTGG
*
70280276 CTAAAAATATAGTTTTTA
1 CTAAAAATAAAGTTTTTA
70280294 CTAAAAATAAA-TGTTTT-
1 CTAAAAATAAAGT-TTTTA
70280311 CTAAAAATA
1 CTAAAAATA
70280320 CGAACGAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.39
Consensus pattern (18 bp):
CTAAAAATAAAGTTTTTA
Found at i:70290951 original size:46 final size:46
Alignment explanation
Indices: 70290870--70290979 Score: 145
Period size: 46 Copynumber: 2.4 Consensus size: 46
70290860 TGCCATGTAT
**
70290870 CAGACATGGTCTTACACTAAC--ACATCTCGTAGCCGATACATGTCC
1 CAGACAT-GTCTTACACTGGCTTACATCTCGTAGCCGATACATGTCC
* *
70290915 TAGACATGTCTTACACTGGCTTACATCTCG-AGGCCGATGCATGTCC
1 CAGACATGTCTTACACTGGCTTACATCTCGTA-GCCGATACATGTCC
70290961 CAGACATGTCTTACACTGG
1 CAGACATGTCTTACACTGG
70290980 AACACAAATA
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
44 11 0.19
45 7 0.12
46 39 0.68
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (46 bp):
CAGACATGTCTTACACTGGCTTACATCTCGTAGCCGATACATGTCC
Found at i:70297221 original size:21 final size:18
Alignment explanation
Indices: 70297180--70297217 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
70297170 TACGAAAACT
70297180 AAGAAAATTTCACTCAAC
1 AAGAAAATTTCACTCAAC
70297198 AAGAAAATTTCACTCAAC
1 AAGAAAATTTCACTCAAC
70297216 AA
1 AA
70297218 CAAGTCTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.21, G:0.05, T:0.21
Consensus pattern (18 bp):
AAGAAAATTTCACTCAAC
Found at i:70308526 original size:19 final size:20
Alignment explanation
Indices: 70308488--70308526 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
70308478 CATGCCTTAA
*
70308488 TTTTTGAAGTTGTTAATGAT
1 TTTTTGAAGTTGTCAATGAT
*
70308508 TTTTTGAAG-TGTCATTGAT
1 TTTTTGAAGTTGTCAATGAT
70308527 GACTTCTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.23, C:0.03, G:0.21, T:0.54
Consensus pattern (20 bp):
TTTTTGAAGTTGTCAATGAT
Found at i:70312106 original size:40 final size:39
Alignment explanation
Indices: 70312008--70312148 Score: 133
Period size: 40 Copynumber: 3.5 Consensus size: 39
70311998 TGAATGATAC
* * * * * *
70312008 CCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCT-GAGACTACAT
* *
70312048 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGAGGCTACAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCT-GAGACTACAT
* *
70312088 CCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTGAGAC-TAC-AT
70312128 CCGGGCTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
70312149 TTCGTGCACG
Statistics
Matches: 85, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
38 4 0.05
39 5 0.06
40 76 0.89
ACGTcount: A:0.28, C:0.26, G:0.28, T:0.19
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTGAGACTACAT
Found at i:70312169 original size:40 final size:40
Alignment explanation
Indices: 70312042--70312171 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
70312032 ATGCTGGAAA
* * *
70312042 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGAGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
70312082 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
70312122 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
70312162 TTATATCCGG
1 TTATATCCGG
70312172 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.05
40 71 0.95
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:70316687 original size:66 final size:68
Alignment explanation
Indices: 70316609--70316795 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
70316599 TAGTACCACT
*
70316609 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
70316671 CACG
65 CACG
70316675 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
70316740 ATCACG
63 ATCACG
70316746 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
70316796 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:70316720 original size:71 final size:71
Alignment explanation
Indices: 70316632--70316795 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
70316622 CGATTTGTCT
70316632 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70316697 CTTTCA
66 CTTTCA
70316703 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70316768 CTTTCA
66 CTTTCA
70316774 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
70316796 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:70316833 original size:71 final size:70
Alignment explanation
Indices: 70316632--70316829 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
70316622 CGATTTGTCT
* * * *
70316632 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70316697 CTTTCA
65 CTTTCA
* * * *
70316703 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70316768 CTTTCA
65 CTTTCA
* *
70316774 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
70316830 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:70324224 original size:66 final size:68
Alignment explanation
Indices: 70324146--70324332 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
70324136 TAGTACCACT
*
70324146 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
70324208 CACG
65 CACG
70324212 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
70324277 ATCACG
63 ATCACG
70324283 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
70324333 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:70324257 original size:71 final size:71
Alignment explanation
Indices: 70324169--70324332 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
70324159 CGATTTGTCT
70324169 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70324234 CTTTCA
66 CTTTCA
70324240 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70324305 CTTTCA
66 CTTTCA
70324311 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
70324333 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:70324370 original size:71 final size:70
Alignment explanation
Indices: 70324169--70324366 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
70324159 CGATTTGTCT
* * * *
70324169 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70324234 CTTTCA
65 CTTTCA
* * * *
70324240 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70324305 CTTTCA
65 CTTTCA
* *
70324311 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
70324367 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:70336080 original size:6 final size:5
Alignment explanation
Indices: 70336046--70336102 Score: 53
Period size: 6 Copynumber: 10.6 Consensus size: 5
70336036 AAGAAAATTG
*
70336046 AAATGA AAATAA AAATCA AAAGAA AAATA AGAATA AAAT- AAATA AAATA
1 AAAT-A AAAT-A AAAT-A AAA-TA AAATA A-AATA AAATA AAATA AAATA
70336095 AAATA AAA
1 AAATA AAA
70336103 AAATAGGAGG
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
4 4 0.09
5 18 0.41
6 22 0.50
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (5 bp):
AAATA
Found at i:70336096 original size:14 final size:14
Alignment explanation
Indices: 70336070--70336107 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
70336060 ATCAAAAGAA
70336070 AAATAAGAATAAAAT
1 AAATAA-AATAAAAT
70336085 AAATAAAATAAAAT
1 AAATAAAATAAAAT
70336099 AAA-AAAATA
1 AAATAAAATA
70336108 GGAGGATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 6 0.26
14 11 0.48
15 6 0.26
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:70341429 original size:13 final size:13
Alignment explanation
Indices: 70341407--70341439 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
70341397 AAGGGTTTGT
70341407 TTAT-TAAACTAA
1 TTATCTAAACTAA
70341419 TTATCTAAACTAA
1 TTATCTAAACTAA
*
70341432 TTAACTAA
1 TTATCTAA
70341440 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:70342856 original size:15 final size:17
Alignment explanation
Indices: 70342838--70342869 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
70342828 TATTATAATT
70342838 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
70342853 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
70342870 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:70355351 original size:40 final size:41
Alignment explanation
Indices: 70355306--70355435 Score: 160
Period size: 40 Copynumber: 3.2 Consensus size: 41
70355296 CGGAATATAA
70355306 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTGTGCACAAATGCCTTCGGGTCTTAGC
* ** *
70355346 CCGGATAGAATGACTCGT--ACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-GTGCACAAATGCCTTCGGGTCTTAGC
* * *
70355386 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTGTGCACAAATGCCTTCGGGTCTTAGC
70355426 CCGGATATAA
1 CCGGATATAA
70355436 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 12, Indels: 8
0.79 0.13 0.09
Matches are distributed among these distances:
38 1 0.01
40 70 0.95
41 1 0.01
42 2 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (41 bp):
CCGGATATAACCACTGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:70355450 original size:40 final size:40
Alignment explanation
Indices: 70355306--70355472 Score: 142
Period size: 40 Copynumber: 4.2 Consensus size: 40
70355296 CGGAATATAA
*** *
70355306 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
* ** *
70355346 CCGGATAGAATGACTC-GTACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** *
70355386 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
*** * *
70355426 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
70355465 CCGGATAT
1 CCGGATAT
70355473 CATTCAATTT
Statistics
Matches: 101, Mismatches: 22, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
39 15 0.15
40 84 0.83
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:70355456 original size:80 final size:79
Alignment explanation
Indices: 70355306--70355472 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
70355296 CGGAATATAA
* *
70355306 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGTACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
70355371 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
70355386 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
70355448 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
70355465 CCGGATAT
1 CCGGATAT
70355473 CATTCAATTT
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
79 17 0.23
80 57 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:70358125 original size:13 final size:13
Alignment explanation
Indices: 70358107--70358134 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
70358097 TAAGGACTAT
70358107 AAGGGTGTTGTTC
1 AAGGGTGTTGTTC
70358120 AAGGGTGTTGTTC
1 AAGGGTGTTGTTC
70358133 AA
1 AA
70358135 TTCAAAATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.36, T:0.36
Consensus pattern (13 bp):
AAGGGTGTTGTTC
Found at i:70360848 original size:93 final size:93
Alignment explanation
Indices: 70360667--70360912 Score: 280
Period size: 93 Copynumber: 2.7 Consensus size: 93
70360657 TATATATGTA
** * * * * * * * *
70360667 TACGTAGCATGGCCAACGTACATACGGTATAGTTCAATGCGGT-AAACTGCTTTACCAGTAATTT
1 TACGTAGCATAACTAACGTACGTACTGTATAATGCGATGCGGTAAAACTGCTATACCGGTAATTT
* * * * *
70360731 GCAGTTTAATTGCTAGATCAGATAATGG
66 ACAGATCAACTGCCAGATCAGATAATGG
* * *
70360759 TACGTAGCATAGCTAACGTACGTA-TGATATAATGCGGTGCGGTAAAACTGCTATACTGGTAATT
1 TACGTAGCATAACTAACGTACGTACTG-TATAATGCGATGCGGTAAAACTGCTATACCGGTAATT
70360823 TACAGATCAACTGCCAGATCAGATAATGG
65 TACAGATCAACTGCCAGATCAGATAATGG
* * *
70360852 TACGTAGCATAACTAACGTACGTACTGTATAGTGCGATGTGGTAAAATTGCTATACCGGTA
1 TACGTAGCATAACTAACGTACGTACTGTATAATGCGATGCGGTAAAACTGCTATACCGGTA
70360913 TATTATAGTT
Statistics
Matches: 129, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
91 1 0.01
92 33 0.26
93 93 0.72
94 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (93 bp):
TACGTAGCATAACTAACGTACGTACTGTATAATGCGATGCGGTAAAACTGCTATACCGGTAATTT
ACAGATCAACTGCCAGATCAGATAATGG
Found at i:70360928 original size:93 final size:93
Alignment explanation
Indices: 70360703--70360941 Score: 295
Period size: 93 Copynumber: 2.6 Consensus size: 93
70360693 GTATAGTTCA
* * * * *
70360703 ATGCGGT-AAACTGCTTTACCAGTAATTTGCAGTTTAATTGCTAGATCAGATAATGGTACGTAGC
1 ATGCGGTAAAACTGCTATACCGGTAATTTACAGTTTAACTGCCAGATCAGATAATGGTACGTAGC
*
70360767 ATAGCTAACGTACGTATGATATAATGCG
66 ATAACTAACGTACGTATGATATAATGCG
* * * *
70360795 GTGCGGTAAAACTGCTATACTGGTAATTTACAGATCAACTGCCAGATCAGATAATGGTACGTAGC
1 ATGCGGTAAAACTGCTATACCGGTAATTTACAGTTTAACTGCCAGATCAGATAATGGTACGTAGC
*
70360860 ATAACTAACGTACGTACTG-TATAGTGCG
66 ATAACTAACGTACGTA-TGATATAATGCG
* * * * *
70360888 ATGTGGTAAAATTGCTATACCGGT-ATATTATAGTTTAACTGTCAGATCAAATAA
1 ATGCGGTAAAACTGCTATACCGGTAAT-TTACAGTTTAACTGCCAGATCAGATAA
70360942 ATATACGCAG
Statistics
Matches: 124, Mismatches: 20, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
92 8 0.06
93 114 0.92
94 2 0.02
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (93 bp):
ATGCGGTAAAACTGCTATACCGGTAATTTACAGTTTAACTGCCAGATCAGATAATGGTACGTAGC
ATAACTAACGTACGTATGATATAATGCG
Found at i:70362842 original size:21 final size:21
Alignment explanation
Indices: 70362803--70362842 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
70362793 TGTCAAATTT
* *
70362803 AGGTATCAGTAACATTTATCA
1 AGGTATCAGTAAAAGTTATCA
*
70362824 AGGTATCTGTAAAAGTTAT
1 AGGTATCAGTAAAAGTTAT
70362843 AGAGTATCAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (21 bp):
AGGTATCAGTAAAAGTTATCA
Found at i:70365519 original size:55 final size:54
Alignment explanation
Indices: 70365432--70365616 Score: 216
Period size: 55 Copynumber: 3.4 Consensus size: 54
70365422 ATTAGGGTTT
*
70365432 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGGAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGGAAGGTTTCTAAGGC
* ** * * *
70365487 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGATACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGGAAGGT-TTCTAAGGC
* *
70365542 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTG-A-G-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGG-GAAGGTTTC-TAAGGC
70365595 AAGGATACCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
70365617 TCGACACATG
Statistics
Matches: 109, Mismatches: 16, Indels: 12
0.80 0.12 0.09
Matches are distributed among these distances:
52 5 0.05
53 22 0.20
54 8 0.07
55 70 0.64
56 4 0.04
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGGAAGGTTTCTAAGGC
Found at i:70367480 original size:43 final size:43
Alignment explanation
Indices: 70367395--70367505 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 43
70367385 ACCGGCACGA
* * *
70367395 AGCCTGCTAGACTTGAAGCCCGATATCATTTCATCGGTATTAT
1 AGCCTGCTAGGCTCGAAGCCCGATATCATTTCATCGGCATTAT
*
70367438 AGCCTGCTAGGCTCGAAGCCCGATATTATCTT-A-CTGGCATTAT
1 AGCCTGCTAGGCTCGAAGCCCGATATCAT-TTCATC-GGCATTAT
* * *
70367481 AACTTGCTAGGCCCGAAGCCCGATA
1 AGCCTGCTAGGCTCGAAGCCCGATA
70367506 ATATTATTCA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 1 0.02
43 56 0.95
44 2 0.03
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (43 bp):
AGCCTGCTAGGCTCGAAGCCCGATATCATTTCATCGGCATTAT
Found at i:70377453 original size:29 final size:30
Alignment explanation
Indices: 70377419--70377479 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
70377409 TTTGATTTAA
*
70377419 TATGTAATGT-GATACAT-AAACTTTAATTT
1 TATGTAAT-TAGATACATAAAAATTTAATTT
*
70377448 TATGTAATTATATACATAAAAATTTAATTT
1 TATGTAATTAGATACATAAAAATTTAATTT
70377478 TA
1 TA
70377480 CTAATATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 1 0.04
29 14 0.50
30 13 0.46
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.46
Consensus pattern (30 bp):
TATGTAATTAGATACATAAAAATTTAATTT
Done.